RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ITGB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000290

Ensembl transcript IDs: ENSMUST00000000299.14, ENSMUST00000153541.2, ENSMUST00000156644.8

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GACCCAAAGCCGATGCGGCCAGACTCGGTGATCTCGTTGAGGGCCTaGAGCAAGTCCCCGCCCAGCTTCTTGACGTTGTTGAGGTCATCA +
Preference number: 1 (lower is better)
Translates to: DPKPMRPDSVISLRA*SKSPPSFLTLLRSS
Trigger: TGATGACCTCAACAACGTCAAGAAGCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTCTGGCCGCATCGGCTTTGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 90 bp GGGGTCCATGATATCATCGGCTGGACAACCCTTCAGCAGCAGCTGTaGCCGTGTGTCACAGCGCAAGGAGTCAGGTTCTCCTGGTCCAGT +
Preference number: 1 (lower is better)
Translates to: GVHDIIGWTTLQQQL*PCVTAQGVRFSWSS
Trigger: ACTGGACCAGGAGAACCTGACTCCTTGCGCTGTGACACACGGGCACAGCTGCTGCTGAAGGGTTGTCCAGCCGATGATATCATGGACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 90 bp TGGTGGACCTCTGACACTGGCAGGCCGAGCCCTCGTAACCGGGCTTaGAACTACATTTGCCACAGTTGCAGGAACCCCGATCGGGTTGTT +
Preference number: 1 (lower is better)
Translates to: WWTSDTGRPSPRNRA*NYICHSCRNPDRVV
Trigger: AACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAGCCCGGTTACGAGGGCTCGGCCTGCCAGTGTCAGAGGTCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 90 bp GGAGGACACCAATCAGTACGACACCTACCACGGTGCCCCCTACGATaGCAGCCACATTGGGGCCCTTCACACACTCTAGACTGTCCTCCA +
Preference number: 1 (lower is better)
Translates to: GGHQSVRHLPRCPLR*QPHWGPSHTLDCPP
Trigger: TGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGATTGGTGTCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 90 bp ACTCGGCACAAGAGGTGTGGTTGTCCCTGCAGTGCGAGCCACAGCTaGGACAATCCTCACACATCGGTGGCTGGTAGCCTTCGTCACATA +
Preference number: 1 (lower is better)
Translates to: TRHKRCGCPCSASHS*DNPHTSVAGSLRHI
Trigger: TATGTGACGAAGGCTACCAGCCACCGATGTGTGAGGATTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCACACCTCTTGTGCCGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR TCA 90 bp GCTTGCCGACCTCTGTCTGAAACTGGTTGGAGTTGTCGGTTAACTTaGGCACGTGCCGAAAGGCAAATGGGGGCTGGCAGGCCTTCTCCT +
Preference number: 1 (lower is better)
Translates to: ACRPLSETGWSCRLT*ARAERQMGAGRPSP
Trigger: AGGAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCACGTGCTCAAGTTAACCGACAACTCCAACCAGTTTCAGACAGAGGTCGGCAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 90 bp CCTTATCAAACTTCAGGCACTCGGCACAAGAGGTGTGGTTGTCCCTaGAGTGCGAGCCACAGCTGGGACAATCCTCACACATCGGTGGCT +
Preference number: 1 (lower is better)
Translates to: PYQTSGTRHKRCGCP*SASHSWDNPHTSVA
Trigger: AGCCACCGATGTGTGAGGATTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCACACCTCTTGTGCCGAGTGCCTGAAGTTTGATAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 90 bp TCAGTACGACACCTACCACGGTGCCCCCTACGATGGCAGCCACATTaGGGCCCTTCACACACTCTAGACTGTCCTCCACATGGATGTTGT +
Preference number: 1 (lower is better)
Translates to: SVRHLPRCPLRWQPH*GPSHTLDCPPHGCC
Trigger: ACAACATCCATGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 90 bp GAACTCAGGATTAGCGATGCTCCTGGGGTCCATGATATCATCGGCTaGACAACCCTTCAGCAGCAGCTGTGCCCGTGTGTCACAGCGCAA +
Preference number: 1 (lower is better)
Translates to: ELRISDAPGVHDIIG*TTLQQQLCPCVTAQ
Trigger: TTGCGCTGTGACACACGGGCACAGCTGCTGCTGAAGGGTTGTCCAGCCGATGATATCATGGACCCCAGGAGCATCGCTAATCCTGAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 90 bp GAGTTGTCGGTTAACTTGAGCACGTGCCGAAAGGCAAATGGGGGCTaGCAGGCCTTCTCCTTGTTGGGACATGGGTTCCTCAGCTTCTCA +
Preference number: 1 (lower is better)
Translates to: ELSVNLSTCRKANGG*QAFSLLGHGFLSFS
Trigger: TGAGAAGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCACGTGCTCAAGTTAACCGACAACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR TCA 90 bp GGGGCGTCCAGGTTTCCGGAAATCAGTTGCTTGCCGACCTCTGTCTaGAACTGGTTGGAGTTGTCGGTTAACTTGAGCACGTGCCGAAAG +
Preference number: 1 (lower is better)
Translates to: GASRFPEISCLPTSV*NWLELSVNLSTCRK
Trigger: CTTTCGGCACGTGCTCAAGTTAACCGACAACTCCAACCAGTTTCAGACAGAGGTCGGCAAGCAACTGATTTCCGGAAACCTGGACGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 90 bp TGTCACCGCAAAGATGGGCTGGATGTTGCTCTCGGAAAGTTTGTGTaGCAGCTGACCCACGGATGGGTAGTCGAACTCATTGCTCCTCTT +
Preference number: 1 (lower is better)
Translates to: CHRKDGLDVALGKFV*QLTHGWVVELIAPL
Trigger: AAGAGGAGCAATGAGTTCGACTACCCATCCGTGGGTCAGCTGGCACACAAACTTTCCGAGAGCAACATCCAGCCCATCTTTGCGGTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR TCA 90 bp TTGCAACTACATTTGCCACAGTTGCAGGAACCCCGATCGGGTTGTTaGTCTGTACGCCATCACAGTCCCCACGGGATTTGCCTATACTCG +
Preference number: 1 (lower is better)
Translates to: LQLHLPQLQEPRSGC*SVRHHSPHGICLYS
Trigger: CGAGTATAGGCAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 90 bp CCTGGCAGACTTGATATAATGGCGGAAAGAAACCGAGCAGGCTTTTaGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTT +
Preference number: 1 (lower is better)
Translates to: PGRLDIMAERNRAGF*ILGSTGVSCKPRCV
Trigger: AACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCATTATATCAAGTCTGCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR TCA 90 bp AGTACAGATCAATGGGGTATCCCTTGGCCCGCCGGAAAGTCACATTaGATGCGGCAGCCTGTCCTGGTCGCAAGTAAAGTGTCACTTTTT +
Preference number: 1 (lower is better)
Translates to: STDQWGIPWPAGKSH*MRQPVLVASKVSLF
Trigger: AAAAAGTGACACTTTACTTGCGACCAGGACAGGCTGCCGCATTCAATGTGACTTTCCGGCGGGCCAAGGGATACCCCATTGATCTGTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 90 bp GATCTGTACGCCATCACAGTCCCCACGGGATTTGCCTATACTCGATaGTCCATTACTGCAGAAGGAGTCATAGGTGACTTTCAGGGTGTC +
Preference number: 1 (lower is better)
Translates to: DLYAITVPTGFAYTR*SITAEGVIGDFQGV
Trigger: GACACCCTGAAAGTCACCTATGACTCCTTCTGCAGTAATGGAGCATCGAGTATAGGCAAATCCCGTGGGGACTGTGATGGCGTACAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 90 bp CTGGATGTTGCTCTCGGAAAGTTTGTGTGCCAGCTGACCCACGGATaGGTAGTCGAACTCATTGCTCCTCTTGTACATGTTATCCTCCAG +
Preference number: 1 (lower is better)
Translates to: LDVALGKFVCQLTHG*VVELIAPLVHVILQ
Trigger: CTGGAGGATAACATGTACAAGAGGAGCAATGAGTTCGACTACCCATCCGTGGGTCAGCTGGCACACAAACTTTCCGAGAGCAACATCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 90 bp ACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTaGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAA +
Preference number: 1 (lower is better)
Translates to: TFTETAVFLYARKCG*NLLGLGTILRALRQ
Trigger: TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp GCGGCCAGACTCGGTGATCTCGTTGAGGGCCTGCAGCAAGTCCCCGCCCAGCTTGGAGTCAGGTTCTCCTaGTCCAGTGAAGTTCTAGGC +
Preference number: 2 (lower is better)
Translates to: AARLGDLVEGLQQVPAQLGVRFS*SSEVLG
Trigger: GCCTAGAACTTCACTGGACCAGGAGAACCTGACTCC...AAGCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTCTGGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 90 bp TCCACAAACGACCCAAAGCCGATGCGGCCAGACTCGGTGATCTCGTaGAGGGCCTGCAGCAAGTCCCCGCCCAGCTTCTTGACGTTGTTG +
Preference number: 2 (lower is better)
Translates to: STNDPKPMRPDSVIS*RACSKSPPSFLTLL
Trigger: CAACAACGTCAAGAAGCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTCTGGCCGCATCGGCTTTGGGTCGTTTGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp AGCCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGAAGCCACGTTGTGTTTaGAGAGGGGAGGAGGCGTGG +
Preference number: 2 (lower is better)
Translates to: SHVVFAEGRRRGLRGSHLKPRCV*RGEEAW
Trigger: CCACGCCTCCTCCCCTCTGCAAACACAACGTGGCTT...CAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAGGTGTGGTTGTCCCTaGAGTGCGAGCCACAGCTGG +
Preference number: 2 (lower is better)
Translates to: AERNRAGFWILGSTGVSCRCGCP*SASHSW
Trigger: CCAGCTGTGGCTCGCACTGCAGGGACAACCACACCT...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CAA 90 bp ACACATCGGTGGCTGGTAGCCTTCGTCACATATGCACCTGTTGCATaGGCAGTGGCCACGGCCACTGCACTCTACCAGCCGTGCATTCAG +
Preference number: 2 (lower is better)
Translates to: THRWLVAFVTYAPVA*AVATATALYQPCIQ
Trigger: CTGAATGCACGGCTGGTAGAGTGCAGTGGCCGTGGCCACTGCCAATGCAACAGGTGCATATGTGACGAAGGCTACCAGCCACCGATGTGT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp CTTGCATTATGGCATCCAGCCCACCCTCAGGGGCGTCCAGGTTTCCGGAAATCAATGCACCTGTTGCATTaGCAGTGGCCACGGCCACTG +
Preference number: 2 (lower is better)
Translates to: LALWHPAHPQGRPGFRKSMHLLH*QWPRPL
Trigger: CAGTGGCCGTGGCCACTGCCAATGCAACAGGTGCAT...TGATTTCCGGAAACCTGGACGCCCCTGAGGGTGGGCTGGATGCCATAATGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp AGCCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTCCTTGTTGGGACATaGGTTCCTCAGCTTCTCAGG +
Preference number: 2 (lower is better)
Translates to: SHVVFAEGRRRGLRGSHLLLVGT*VPQLLR
Trigger: CCTGAGAAGCTGAGGAACCCATGTCCCAACAAGGAG...CAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 90 bp ATCAGTACGACACCTACCACGGTGCCCCCTACGATGGCAGCCACATaGGGGCCCTTCACACACTCTAGACTGTCCTCCACATGGATGTTG +
Preference number: 2 (lower is better)
Translates to: ISTTPTTVPPTMAAT*GPFTHSRLSSTWML
Trigger: CAACATCCATGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTTTGGCAGCACTGGGGTaGGCTGTAAGCCACGTTGTG +
Preference number: 2 (lower is better)
Translates to: GWNLLGLGTILRALRQDCLAALG*AVSHVV
Trigger: CACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAA...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTAAGCCACGTTGTGTTTaGAGAGGGGAGGAGGCGTGG +
Preference number: 2 (lower is better)
Translates to: GWNLLGLGTILRALRQDCKPRCV*RGEEAW
Trigger: CCACGCCTCCTCCCCTCTGCAAACACAACGTGGCTT...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTCTGTTGCATTGGCAGTaGCCACGGCCACTGCACTCT +
Preference number: 2 (lower is better)
Translates to: GWNLLGLGTILRALRQDCLLHWQ*PRPLHS
Trigger: AGAGTGCAGTGGCCGTGGCCACTGCCAATGCAACAG...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CAA 90 bp AAAGGGCCCTTATCAAACTTCAGGCACTCGGCACAAGAGGTGTGGTaGTCCCTGCAGTGCGAGCCACAGCTGGGACAATCCTCACACATC +
Preference number: 2 (lower is better)
Translates to: KGPLSNFRHSAQEVW*SLQCEPQLGQSSHI
Trigger: GATGTGTGAGGATTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCACACCTCTTGTGCCGAGTGCCTGAAGTTTGATAAGGGCCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CAA 90 bp TTGAGCACGTGCCGAAAGGCAAATGGGGGCTGGCAGGCCTTCTCCTaGTTGGGACATGGGTTCCTCAGCTTCTCAGGATGGGTGTTAACA +
Preference number: 2 (lower is better)
Translates to: LSTCRKANGGWQAFS*LGHGFLSFSGWVLT
Trigger: TGTTAACACCCATCCTGAGAAGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCACGTGCTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp AATCAGTACGACACCTACCACGGTGCCCCCTACGATGGCAGCCACATTGGGGCCTTCAAAGGGATAGTCTaGAGCGTCATACCAGCACAC +
Preference number: 2 (lower is better)
Translates to: NQYDTYHGAPYDGSHIGAFKGIV*SVIPAH
Trigger: GTGTGCTGGTATGACGCTGCAGACTATCCCTTTGAA...GGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp ATGACCAGGAGGAGGACACCAATCAGTACGACACCTACCACGGTGCCCCCTACGGCTTGCAACTACATTTaGCACAGTTGCAGGAACCCC +
Preference number: 2 (lower is better)
Translates to: MTRRRTPISTTPTTVPPTACNYI*HSCRNP
Trigger: GGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAGC...CGTAGGGGGCACCGTGGTAGGTGTCGTACTGATTGGTGTCCTCCTCCTGGTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp TGCAACTACATTTGCCACAGTTGCAGGAACCCCGATCGGGTTGTTGATCTGTACGGCAGCGGCCATCATTaGGGGTCAGGATGGCACCCA +
Preference number: 2 (lower is better)
Translates to: CNYICHSCRNPDRVVDLYGSGHH*GSGWHP
Trigger: TGGGTGCCATCCTGACCCCCAATGATGGCCGCTGCC...GTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGTAGTTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 90 bp TTCCTCAGCTTCTCAGGATGGGTGTTAACAAAAGGCAGCACCGTCTaGTCCACAAACGACCCAAAGCCGATGCGGCCAGACTCGGTGATC +
Preference number: 2 (lower is better)
Translates to: FLSFSGWVLTKGSTV*STNDPKPMRPDSVI
Trigger: GATCACCGAGTCTGGCCGCATCGGCTTTGGGTCGTTTGTGGACAAGACGGTGCTGCCTTTTGTTAACACCCATCCTGAGAAGCTGAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp AAAGTTTGTGTGCCAGCTGACCCACGGATGGGTAGTCGAACTCATTGCTCCTCTTTGGCAGCACTGGGGTaGGCTGTAAGCCACGTTGTG +
Preference number: 2 (lower is better)
Translates to: KVCVPADPRMGSRTHCSSLAALG*AVSHVV
Trigger: CACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAA...AGAGGAGCAATGAGTTCGACTACCCATCCGTGGGTCAGCTGGCACACAAACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp CGTCACATATGCACCTGTTGCATTGGCAGTGGCCACGGCCACTGCACTCTACCACAATTCTTAGGGCTCTaGGGCAAGATTGTGCAGGTC +
Preference number: 2 (lower is better)
Translates to: RHICTCCIGSGHGHCTLPQFLGL*GKIVQV
Trigger: GACCTGCACAATCTTGCCGCAGAGCCCTAAGAATTG...TGGTAGAGTGCAGTGGCCGTGGCCACTGCCAATGCAACAGGTGCATATGTGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp CACGGATGGGTAGTCGAACTCATTGCTCCTCTTGTACATGTTATCCTCCAGGTGGTGCCGAAAGGCAAATaGGGGCTGGCAGGCCTTCTC +
Preference number: 2 (lower is better)
Translates to: HGWVVELIAPLVHVILQVVPKGK*GLAGLL
Trigger: GAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCAC...CACCTGGAGGATAACATGTACAAGAGGAGCAATGAGTTCGACTACCCATCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 90 bp GGGCTTGCAACTACATTTGCCACAGTTGCAGGAACCCCGATCGGGTaGTTGATCTGTACGCCATCACAGTCCCCACGGGATTTGCCTATA +
Preference number: 2 (lower is better)
Translates to: GLATTFATVAGTPIG*LICTPSQSPRDLPI
Trigger: TATAGGCAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGATCAGGGCCTTCCAGATaGCCAGGAGGAGGACACCAA +
Preference number: 2 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERSGPSR*PGGGHQ
Trigger: TTGGTGTCCTCCTCCTGGTCATCTGGAAGGCCCTGA...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGATGGTTGTCCCTGCAGTaGGAGCCACAGCTGGGACAA +
Preference number: 2 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERWLSLQ*EPQLGQ
Trigger: TTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCA...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CAA 90 bp CTTGCAACTACATTTGCCACAGTTGCAGGAACCCCGATCGGGTTGTaGATCTGTACGCCATCACAGTCCCCACGGGATTTGCCTATACTC +
Preference number: 2 (lower is better)
Translates to: LATTFATVAGTPIGL*ICTPSQSPRDLPIL
Trigger: GAGTATAGGCAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGTGGGGCCACCTTTACTaGGACTGCTGTCTTCCTTTA +
Preference number: 2 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKWGHLY*DCCLPL
Trigger: TAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCA...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp ATCCAACAGCCTTCCGAGTCCCTCTCCTTGCAGGGCTTTTTCTTCAAAGGGATAGTTCTCCTGGTCCAGTaGAGTTCTAGGCCAGTGGGA +
Preference number: 2 (lower is better)
Translates to: IQQPSESLSLQGFFFKGIVLLVQ*SSRPVG
Trigger: TCCCACTGGCCTAGAACTTCACTGGACCAGGAGAAC...TATCCCTTTGAAGAAAAAGCCCTGCAAGGAGAGGGACTCGGAAGGCTGTTGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp GTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGTGTACTGAGGTCAGTCAGGTaGGTCAGGGCCTTCCAGATG +
Preference number: 2 (lower is better)
Translates to: VLHMDVVNVPSVLLLQSVLRSVR*VRAFQM
Trigger: CATCTGGAAGGCCCTGACCCACCTGACTGACCTCAG...TACACTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp CTAGACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCATGCGGCAGCCTGTCCTaGTCGCAAGTAAAGTGTCAC +
Preference number: 2 (lower is better)
Translates to: LDCPPHGCCKCSFRPSAACGSLS*SQVKCH
Trigger: GTGACACTTTACTTGCGACCAGGACAGGCTGCCGCA...TGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 90 bp GAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTaGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTGCA +
Preference number: 2 (lower is better)
Translates to: ETAVFLYARKCGWNL*GLGTILRALRQDCA
Trigger: TGCACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp CTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTGCCGACCTCTGTCTaGAACTGGTTGGAGTTGTCG +
Preference number: 2 (lower is better)
Translates to: LSSFMQENVGGTSWDSGQLPTSV*NWLELS
Trigger: CGACAACTCCAACCAGTTTCAGACAGAGGTCGGCAA...TTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp GACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGCAGCAACTTGCATTATaGCATCCAGCCCACCCTCAG +
Preference number: 2 (lower is better)
Translates to: DCPPHGCCKCSFRPSAAKQQLAL*HPAHPQ
Trigger: CTGAGGGTGGGCTGGATGCCATAATGCAAGTTGCTG...CTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp GGCCCTTCACACACTCTAGACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCAATTCTTAGGGCTCTaGGGCAAGATTGTGCAGGTC +
Preference number: 2 (lower is better)
Translates to: GPSHTLDCPPHGCCKCSFQFLGL*GKIVQV
Trigger: GACCTGCACAATCTTGCCGCAGAGCCCTAAGAATTG...GAAGGAACATTTACAACATCCATGTGGAGGACAGTCTAGAGTGTGTGAAGGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp GGGGGTCACATCTGCTTGATTATGATAACTCATGCTCTAGCTTTCAGCAAACTTTGGTTGTCCCTGCAGTaGGAGCCACAGCTGGGACAA +
Preference number: 2 (lower is better)
Translates to: GGHICLIMITHALAFSKLWLSLQ*EPQLGQ
Trigger: TTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCA...AAGTTTGCTGAAAGCTAGAGCATGAGTTATCATAATCAAGCAGATGTGACCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp CTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACCCGAGTCCCTCTCCTTaGAGGGCTTTTTCTTCAAAG +
Preference number: 2 (lower is better)
Translates to: LRLLSSFMQENVGGTSWDPSPSP*RAFSSK
Trigger: CTTTGAAGAAAAAGCCCTGCAAGGAGAGGGACTCGG...GTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp TTCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTCTCAGCTTCTCAGGATaGGTGTTAACAAAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: FSKLGVHDRCRSTLEEGVLSFSG*VLTKGS
Trigger: GCTGCCTTTTGTTAACACCCATCCTGAGAAGCTGAG...AACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp GGGGGTCACATCTGCTTGATTATGATAACTCATGCTCTAGCTTTCAGCAAACTTTGCTCCTGGGGTCCATaGTATCATCGGCTGGACAAC +
Preference number: 2 (lower is better)
Translates to: GGHICLIMITHALAFSKLCSWGP*YHRLDN
Trigger: GTTGTCCAGCCGATGATATCATGGACCCCAGGAGCA...AAGTTTGCTGAAAGCTAGAGCATGAGTTATCATAATCAAGCAGATGTGACCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp GGGGGTCACATCTGCTTGATTATGATAACTCATGCTCTAGCTTTCAGCAAACTTAGGCCTTCTCCTTGTTaGGACATGGGTTCCTCAGCT +
Preference number: 2 (lower is better)
Translates to: GGHICLIMITHALAFSKLRPSPC*DMGSSA
Trigger: AGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCT...AAGTTTGCTGAAAGCTAGAGCATGAGTTATCATAATCAAGCAGATGTGACCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR TCA 90 bp ACTGAACACTACAGTTCTTCTCAAAAGGGCCCTTATCAAACTTCAGGCACTCGGAAACCCTGGCAGACTTaGTATAATGGCGGAAAGAAA +
Preference number: 2 (lower is better)
Translates to: TEHYSSSQKGPYQTSGTRKPWQT*YNGGKK
Trigger: TTTCTTTCCGCCATTATATCAAGTCTGCCAGGGTTT...CCGAGTGCCTGAAGTTTGATAAGGGCCCTTTTGAGAAGAACTGTAGTGTTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR GCA 90 bp CTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTGCTGTCTTCCTTTATaGAAGAAAATGTGGGTGGAA +
Preference number: 2 (lower is better)
Translates to: LRLLSSFMQENVGGTSWDCCLPL*KKMWVE
Trigger: TTCCACCCACATTTTCTTGCATAAAGGAAGACAGCA...GTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp ACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGTTTATGCAAGAAAATGTaGGTGGAACCTCTTGGGACT +
Preference number: 2 (lower is better)
Translates to: TVLHMDVVNVPSVLLLQSLCKKM*VEPLGT
Trigger: AGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAA...ACTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CCA 90 bp CACAAAGCTTACCTTCCATGGACAGCATGGATGGAAGCTTTATTATTTTTCATAGCAAGAAAATGTGGGTaGAACCTCTTGGGACTCGGG +
Preference number: 2 (lower is better)
Translates to: HKAYLPWTAWMEALLFFIARKCG*NLLGLG
Trigger: CCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGC...TATGAAAAATAATAAAGCTTCCATCCATGCTGTCCATGGAAGGTAAGCTTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
3UTR-3UTR CCA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGACATGGACAGCATGGATaGAAGCTTTATTATTTTTCA +
Preference number: 2 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERHGQHG*KLYYFS
Trigger: TGAAAAATAATAAAGCTTCCATCCATGCTGTCCATG...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
3UTR-3UTR CCA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGCATGGACAGCATGGATaGAAGCTTTATTATTTTTCA +
Preference number: 2 (lower is better)
Translates to: VGATFTETAVFLYARKCGHGQHG*KLYYFS
Trigger: TGAAAAATAATAAAGCTTCCATCCATGCTGTCCATG...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
3UTR-3UTR CAA 90 bp GACTTTCAGGGTGTCCGGGAGGGTGCTGTGGTCCAGGAAGACTCTAGAGGAGAGTGGCAGCGGCCATCATaGGGGGTCAGGATGGCACCC +
Preference number: 3 (lower is better)
Translates to: DFQGVREGAVVQEDSRGEWQRPS*GVRMAP
Trigger: GGGTGCCATCCTGACCCCCAATGATGGCCGCTGCCA...CTCTCCTCTAGAGTCTTCCTGGACCACAGCACCCTCCCGGACACCCTGAAAGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp CCGATGCGGCCAGACTCGGTGATCTCGTTGAGGGCCTaGAGCAAGTCCCCGCCCAGCTTCTTGACGTTGTTG +
Preference number: 3 (lower is better)
Translates to: PMRPDSVISLRA*SKSPPSFLTLL
Trigger: CAACAACGTCAAGAAGCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTCTGGCCGCATCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp AGCCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGGCACAAGAGGTGTGGTaGTCCCTGCAGTGCGAGCCA +
Preference number: 3 (lower is better)
Translates to: SHVVFAEGRRRGLRGSHLAQEVW*SLQCEP
Trigger: TGGCTCGCACTGCAGGGACAACCACACCTCTTGTGC...CAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR GCA 72 bp AGGCACTCGGCACAAGAGGTGTGGTTGTCCCTGCAGTaGGAGCCACAGCTGGGACAATCCTCACACATCGGT +
Preference number: 3 (lower is better)
Translates to: RHSAQEVWLSLQ*EPQLGQSSHIG
Trigger: ACCGATGTGTGAGGATTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCACACCTCTTGTGCCGAGTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR GCA 72 bp TTGCGCCAGCCAATTTCCTCCGGACATGCAGCAACTTaGATTATGGCATCCAGCCCACCCTCAGGGGCGTCC +
Preference number: 3 (lower is better)
Translates to: LRQPISSGHAAT*IMASSPPSGAS
Trigger: GGACGCCCCTGAGGGTGGGCTGGATGCCATAATGCAAGTTGCTGCATGTCCGGAGGAAATTGGCTGGCGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp CACCTACCACGGTGCCCCCTACGATGGCAGCCACATTaGGGCCCTTCACACACTCTAGACTGTCCTCCACAT +
Preference number: 3 (lower is better)
Translates to: HLPRCPLRWQPH*GPSHTLDCPPH
Trigger: ATGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp GCCACAGTTGCAGGAACCCCGATCGGGTTGTTGATCTGTACGCCATCACAGTCCGCACAAGAGGTGTGGTaGTCCCTGCAGTGCGAGCCA +
Preference number: 3 (lower is better)
Translates to: ATVAGTPIGLLICTPSQSAQEVW*SLQCEP
Trigger: TGGCTCGCACTGCAGGGACAACCACACCTCTTGTGC...GGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp ATGACCAGGAGGAGGACACCAATCAGTACGACACCTACCACGGTGCCCCCTACGTGGCAGGCCTTCTCCTaGTTGGGACATGGGTTCCTC +
Preference number: 3 (lower is better)
Translates to: MTRRRTPISTTPTTVPPTWQAFS*LGHGFL
Trigger: GAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCA...CGTAGGGGGCACCGTGGTAGGTGTCGTACTGATTGGTGTCCTCCTCCTGGTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp GCCACAGTTGCAGGAACCCCGATCGGGTTGTTGATCTGTACGCCATCACAGTCCTCAATGGGGTATCCCTaGGCCCGCCGGAAAGTCACA +
Preference number: 3 (lower is better)
Translates to: ATVAGTPIGLLICTPSQSSMGYP*ARRKVT
Trigger: TGTGACTTTCCGGCGGGCCAAGGGATACCCCATTGA...GGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp TCGGTGGCTGGTAGCCTTCGTCACATATGCACCTGTTaGATTGGCAGTGGCCACGGCCACTGCACTCTACCA +
Preference number: 3 (lower is better)
Translates to: SVAGSLRHICTC*IGSGHGHCTLP
Trigger: TGGTAGAGTGCAGTGGCCGTGGCCACTGCCAATGCAACAGGTGCATATGTGACGAAGGCTACCAGCCACCGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR GCA 72 bp GATATCATCGGCTGGACAACCCTTCAGCAGCAGCTGTaGCCGTGTGTCACAGCGCAAGGAGTCAGGTTCTCC +
Preference number: 3 (lower is better)
Translates to: DIIGWTTLQQQL*PCVTAQGVRFS
Trigger: GGAGAACCTGACTCCTTGCGCTGTGACACACGGGCACAGCTGCTGCTGAAGGGTTGTCCAGCCGATGATATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp GGGGTATCCCTTGGCCCGCCGGAAAGTCACATTGAATaGGGCAGCCTGTCCTGGTCGCAAGTAAAGTGTCAC +
Preference number: 3 (lower is better)
Translates to: GVSLGPPESHIE*GSLSWSQVKCH
Trigger: GTGACACTTTACTTGCGACCAGGACAGGCTGCCGCATTCAATGTGACTTTCCGGCGGGCCAAGGGATACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp AAGAGGTGTGGTTGTCCCTGCAGTGCGAGCCACAGCTaGGACAATCCTCACACATCGGTGGCTGGTAGCCTT +
Preference number: 3 (lower is better)
Translates to: KRCGCPCSASHS*DNPHTSVAGSL
Trigger: AAGGCTACCAGCCACCGATGTGTGAGGATTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCACACCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 72 bp CAATCAGTACGACACCTACCACGGTGCCCCCTACGATaGCAGCCACATTGGGGCCCTTCACACACTCTAGAC +
Preference number: 3 (lower is better)
Translates to: QSVRHLPRCPLR*QPHWGPSHTLD
Trigger: GTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 72 bp TGCCCGTGTGTCACAGCGCAAGGAGTCAGGTTCTCCTaGTCCAGTGAAGTTCTAGGCCAGTGGGAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: CPCVTAQGVRFS*SSEVLGQWEGR
Trigger: CCTTCCTTCCCACTGGCCTAGAACTTCACTGGACCAGGAGAACCTGACTCCTTGCGCTGTGACACACGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR TCA 72 bp CAATGGGGTATCCCTTGGCCCGCCGGAAAGTCACATTaGATGCGGCAGCCTGTCCTGGTCGCAAGTAAAGTG +
Preference number: 3 (lower is better)
Translates to: QWGIPWPAGKSH*MRQPVLVASKV
Trigger: CACTTTACTTGCGACCAGGACAGGCTGCCGCATTCAATGTGACTTTCCGGCGGGCCAAGGGATACCCCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp CCTCAGGGGCGTCCAGGTTTCCGGAAATCAGTTGCTTaGCGACCTCTGTCTGAAACTGGTTGGAGTTGTCGG +
Preference number: 3 (lower is better)
Translates to: PQGRPGFRKSVA*RPLSETGWSCR
Trigger: CCGACAACTCCAACCAGTTTCAGACAGAGGTCGGCAAGCAACTGATTTCCGGAAACCTGGACGCCCCTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp ATTAGCGATGCTCCTGGGGTCCATGATATCATCGGCTaGACAACCCTTCAGCAGCAGCTGTGCCCGTGTGTC +
Preference number: 3 (lower is better)
Translates to: ISDAPGVHDIIG*TTLQQQLCPCV
Trigger: GACACACGGGCACAGCTGCTGCTGAAGGGTTGTCCAGCCGATGATATCATGGACCCCAGGAGCATCGCTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp GAAAGGCAAATGGGGGCTGGCAGGCCTTCTCCTTGTTaGGACATGGGTTCCTCAGCTTCTCAGGATGGGTGT +
Preference number: 3 (lower is better)
Translates to: ERQMGAGRPSPC*DMGSSASQDGC
Trigger: ACACCCATCCTGAGAAGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp GTTAACTTGAGCACGTGCCGAAAGGCAAATGGGGGCTaGCAGGCCTTCTCCTTGTTGGGACATGGGTTCCTC +
Preference number: 3 (lower is better)
Translates to: VNLSTCRKANGG*QAFSLLGHGFL
Trigger: GAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCACGTGCTCAAGTTAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR TCA 72 bp CCTCTGTCTGAAACTGGTTGGAGTTGTCGGTTAACTTaGGCACGTGCCGAAAGGCAAATGGGGGCTGGCAGG +
Preference number: 3 (lower is better)
Translates to: PLSETGWSCRLT*ARAERQMGAGR
Trigger: CCTGCCAGCCCCCATTTGCCTTTCGGCACGTGCTCAAGTTAACCGACAACTCCAACCAGTTTCAGACAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR TCA 72 bp CATTTGCCACAGTTGCAGGAACCCCGATCGGGTTGTTaGTCTGTACGCCATCACAGTCCCCACGGGATTTGC +
Preference number: 3 (lower is better)
Translates to: HLPQLQEPRSGC*SVRHHSPHGIC
Trigger: GCAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp GTGCCAGCTGACCCACGGATGGGTAGTCGAACTCATTaGTCCTCTTGTACATGTTATCCTCCAGGTGGCAGC +
Preference number: 3 (lower is better)
Translates to: VPADPRMGSRTH*SSCTCYPPGGS
Trigger: GCTGCCACCTGGAGGATAACATGTACAAGAGGAGCAATGAGTTCGACTACCCATCCGTGGGTCAGCTGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp TCGTCAGACAGTTCCCCCACTGCTGACTTGGGGATGATCTCCGTGAGTTTCTCATCCCCGCCCAGCTTCTaGACGTTGTTGAGGTCATCA +
Preference number: 3 (lower is better)
Translates to: SSDSSPTADLGMISVSFSSPPSF*TLLRSS
Trigger: TGATGACCTCAACAACGTCAAGAAGCTGGGCGGGGA...TGAGAAACTCACGGAGATCATCCCCAAGTCAGCAGTGGGGGAACTGTCTGACGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp TTCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTGACTCGGTGATCTCGTaGAGGGCCTGCAGCAAGTCC +
Preference number: 3 (lower is better)
Translates to: FSKLGVHDRCRSTLEEGVDSVIS*RACSKS
Trigger: GGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTC...AACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp AGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTGTCCAGGCCTTCTCCTTGTaGGGACATGGGTTCCTCAGC +
Preference number: 3 (lower is better)
Translates to: SKLGVHDRCRSTLEEGVVQAFSL*GHGFLS
Trigger: GCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTG...GACAACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp CCATCTTCTTTGTCACCGCAAAGATGGGCTGGATGTTaGTCTCGGAAAGTTTGTGTGCCAGCTGACCCACGG +
Preference number: 3 (lower is better)
Translates to: PSSLSPQRWAGC*SRKVCVPADPR
Trigger: CCGTGGGTCAGCTGGCACACAAACTTTCCGAGAGCAACATCCAGCCCATCTTTGCGGTGACAAAGAAGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp TGTCACCGCAAAGATGGGCTGGATGTTGCTCTCGGAAAGTTTGTGTGCCAGCTGAGCTTCTTGACGTTGTaGAGGTCATCAAGCATGGAG +
Preference number: 3 (lower is better)
Translates to: CHRKDGLDVALGKFVCQLSFLTL*RSSSME
Trigger: CTCCATGCTTGATGACCTCAACAACGTCAAGAAGCT...CAGCTGGCACACAAACTTTCCGAGAGCAACATCCAGCCCATCTTTGCGGTGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp AAAGATGGGCTGGATGTTGCTCTCGGAAAGTTTGTGTaGCAGCTGACCCACGGATGGGTAGTCGAACTCATT +
Preference number: 3 (lower is better)
Translates to: KDGLDVALGKFV*QLTHGWVVELI
Trigger: AATGAGTTCGACTACCCATCCGTGGGTCAGCTGGCACACAAACTTTCCGAGAGCAACATCCAGCCCATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp CTTGATATAATGGCGGAAAGAAACCGAGCAGGCTTTTaGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCA +
Preference number: 3 (lower is better)
Translates to: LDIMAERNRAGF*ILGSTGVSCKP
Trigger: TGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCATTATATCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 72 bp GCTCTCGGAAAGTTTGTGTGCCAGCTGACCCACGGATaGGTAGTCGAACTCATTGCTCCTCTTGTACATGTT +
Preference number: 3 (lower is better)
Translates to: ALGKFVCQLTHG*VVELIAPLVHV
Trigger: AACATGTACAAGAGGAGCAATGAGTTCGACTACCCATCCGTGGGTCAGCTGGCACACAAACTTTCCGAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR TCA 72 bp AGGTTTCCGGAAATCAGTTGCTTGCCGACCTCTGTCTaGAACTGGTTGGAGTTGTCGGTTAACTTGAGCACG +
Preference number: 3 (lower is better)
Translates to: RFPEISCLPTSV*NWLELSVNLST
Trigger: CGTGCTCAAGTTAACCGACAACTCCAACCAGTTTCAGACAGAGGTCGGCAAGCAACTGATTTCCGGAAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR GCA 72 bp GCCATCACAGTCCCCACGGGATTTGCCTATACTCGATaGTCCATTACTGCAGAAGGAGTCATAGGTGACTTT +
Preference number: 3 (lower is better)
Translates to: AITVPTGFAYTR*SITAEGVIGDF
Trigger: AAAGTCACCTATGACTCCTTCTGCAGTAATGGAGCATCGAGTATAGGCAAATCCCGTGGGGACTGTGATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp TCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTaGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAG +
Preference number: 3 (lower is better)
Translates to: SSFMQENVGGTS*DSGQFLGLCGK
Trigger: CTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR-3UTR CAA 90 bp CTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACCCCAGCTTCTTGACGTaGTTGAGGTCATCAAGCATG +
Preference number: 3 (lower is better)
Translates to: LRLLSSFMQENVGGTSWDPSFLT*LRSSSM
Trigger: CATGCTTGATGACCTCAACAACGTCAAGAAGCTGGG...GTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CCA 72 bp GAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTaGAACCTCTTGGGACTCGGGACAATTCTTAGGGCT +
Preference number: 3 (lower is better)
Translates to: ETAVFLYARKCG*NLLGLGTILRA
Trigger: AGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CCA 72 bp CATACGTTTTCACCATCTTCTTTGTCACCGCAAAGATaGGCTGGATGTTGCTCTCGGAAAGTTTGTGTGCCA +
Preference number: 3 (lower is better)
Translates to: HTFSPSSLSPQR*AGCCSRKVCVP
Trigger: TGGCACACAAACTTTCCGAGAGCAACATCCAGCCCATCTTTGCGGTGACAAAGAAGATGGTGAAAACGTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 72 bp GACCCAAAGCCGATGCGGCCAGACTCGGTGATCTCGTaGAGGGCCTGCAGCAAGTCCCCGCCCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: DPKPMRPDSVIS*RACSKSPPSFL
Trigger: CAAGAAGCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTCTGGCCGCATCGGCTTTGGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS-3UTR GCA 90 bp AGCCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGGGGTGTCCGGGAGGGTaGTGTGGTCCAGGAAGACTC +
Preference number: 4 (lower is better)
Translates to: SHVVFAEGRRRGLRGSHLGCPGG*CGPGRL
Trigger: GAGTCTTCCTGGACCACAGCACCCTCCCGGACACCC...CAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp TGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGATCTCGTTGAGGGCCTaGAGCAAGTCCCCGCCCAGC +
Preference number: 4 (lower is better)
Translates to: WILGSTGVSCKPRCVCRGISLRA*SKSPPS
Trigger: GCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGAT...CCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp ATGGCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCATCTCGTTGAGGGCCTaGAGCAAGTCCCCGCCCAGC +
Preference number: 4 (lower is better)
Translates to: MAERNRAGFWILGSTGVSISLRA*SKSPPS
Trigger: GCTGGGCGGGGACTTGCTGCAGGCCCTCAACGAGAT...GCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp TGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGGGGTGTCCGGGAGGGTaGTGTGGTCCAGGAAGACTC +
Preference number: 4 (lower is better)
Translates to: WILGSTGVSCKPRCVCRGGCPGG*CGPGRL
Trigger: GAGTCTTCCTGGACCACAGCACCCTCCCGGACACCC...CCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp CCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTTGGTTGTCCCTGCAGTaGGAGCCACAGCTGGGACAA +
Preference number: 4 (lower is better)
Translates to: PRCVCRGEEAWSEGVTSAWLSLQ*EPQLGQ
Trigger: TTGTCCCAGCTGTGGCTCGCACTGCAGGGACAACCA...AGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
3UTR CAA 72 bp ACACCTACCACGGTGCCCCCTACGATGGCAGCCACATaGGGGCCCTTCACACACTCTAGACTGTCCTCCACA +
Preference number: 4 (lower is better)
Translates to: TPTTVPPTMAAT*GPFTHSRLSST
Trigger: TGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
CDS-3UTR TCA 90 bp AAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAACTCTGGTCCCGGCACTaGCACTCACACTGGGGACGG +
Preference number: 4 (lower is better)
Translates to: KCGWNLLGLGTILRALRQLWSRH*HSHWGR
Trigger: CCGTCCCCAGTGTGAGTGTCAGTGCCGGGACCAGAG...TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AGCCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGAAGGCAAATGGGGGCTaGCAGGCCTTCTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: SHVVFAEGRRRGLRGSHLKANGG*QAFSLL
Trigger: CAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTT...CAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AATCAGTACGACACCTACCACGGTGCCCCCTACGATGGCAGCCACATTGGGGCCCATTGGGGGTCAGGATaGCACCCAGTTTGCCATCAC +
Preference number: 4 (lower is better)
Translates to: NQYDTYHGAPYDGSHIGAHWGSG*HPVCHH
Trigger: GTGATGGCAAACTGGGTGCCATCCTGACCCCCAATG...GGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCGGCAGCGGCCATCATTaGGGGTCAGGATGGCACCCA +
Preference number: 4 (lower is better)
Translates to: ENVGGTSWDSGQFLGLCGGSGHH*GSGWHP
Trigger: TGGGTGCCATCCTGACCCCCAATGATGGCCGCTGCC...GCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTATGTTATCCTCCAGGTaGCAGCGGCCATCATTGGGG +
Preference number: 4 (lower is better)
Translates to: PRCVCRGEEAWSEGVTSAMLSSR*QRPSLG
Trigger: CCCCAATGATGGCCGCTGCCACCTGGAGGATAACAT...AGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp TGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGAACCCAGTGCCCGGATaGCAAAGGACTGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: WILGSTGVSCKPRCVCRGNPVPG*QRTAPG
Trigger: TCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTT...CCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGTCTCCAGCTCCTGGCTaGTCCGACCCTGAGTCTGGC +
Preference number: 4 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKSPAPG*SDPESG
Trigger: GCCAGACTCAGGGTCGGAGCAGCCAGGAGCTGGAGA...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTGGAAGCCATCGTCTGTaGCAAACACCAGCAGCCTCG +
Preference number: 4 (lower is better)
Translates to: AERNRAGFWILGSTGVSCGSHRL*QTPAAS
Trigger: CGAGGCTGCTGGTGTTTGCCACAGACGATGGCTTCC...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp ATCAAACTTCAGGCACTCGGCACAAGAGGTGTGGTTGTCCCTGCAGTGCGAGCCGGAAGCCATCGTCTGTaGCAAACACCAGCAGCCTCG +
Preference number: 4 (lower is better)
Translates to: IKLQALGTRGVVVPAVRAGSHRL*QTPAAS
Trigger: CGAGGCTGCTGGTGTTTGCCACAGACGATGGCTTCC...GGCTCGCACTGCAGGGACAACCACACCTCTTGTGCCGAGTGCCTGAAGTTTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTCCATCACCAGCAAAGTaGAAGCCATCGTCTGTGGCA +
Preference number: 4 (lower is better)
Translates to: PRCVCRGEEAWSEGVTSAPSPAK*KPSSVA
Trigger: TGCCACAGACGATGGCTTCCACTTTGCTGGTGATGG...AGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTTCCGGGAGGGTGCTGTaGTCCAGGAAGACTCTAGAG +
Preference number: 4 (lower is better)
Translates to: AERNRAGFWILGSTGVSCSGRVL*SRKTLE
Trigger: CTCTAGAGTCTTCCTGGACCACAGCACCCTCCCGGA...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTATGCACCTGTTGCATTaGCAGTGGCCACGGCCACTG +
Preference number: 4 (lower is better)
Translates to: AERNRAGFWILGSTGVSCMHLLH*QWPRPL
Trigger: CAGTGGCCGTGGCCACTGCCAATGCAACAGGTGCAT...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp ATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGGAGCTGAGGTCAGTCAGGTaGGTCAGGGCCTTCCAGATG +
Preference number: 4 (lower is better)
Translates to: ILGSTGVSCKPRCVCRGELRSVR*VRAFQM
Trigger: CATCTGGAAGGCCCTGACCCACCTGACTGACCTCAG...CTCCCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
3UTR CAA 72 bp TGCCGAAAGGCAAATGGGGGCTGGCAGGCCTTCTCCTaGTTGGGACATGGGTTCCTCAGCTTCTCAGGATGG +
Preference number: 4 (lower is better)
Translates to: CRKANGGWQAFS*LGHGFLSFSGW
Trigger: CCATCCTGAGAAGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS-3UTR TCA 90 bp AGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCATGGCTGCTCCGACCCTaGGTCTGGCACTCACAGTTT +
Preference number: 4 (lower is better)
Translates to: RNRAGFWILGSTGVSCKPWLLRP*VWHSQF
Trigger: AAACTGTGAGTGCCAGACTCAGGGTCGGAGCAGCCA...TGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR GCA 90 bp ATGACCAGGAGGAGGACACCAATCAGTACGACACCTACCACGGTGCCCCCTACGGAAAGTCACATTGAATaGGGCAGCCTGTCCTGGTCG +
Preference number: 4 (lower is better)
Translates to: MTRRRTPISTTPTTVPPTESHIE*GSLSWS
Trigger: CGACCAGGACAGGCTGCCGCATTCAATGTGACTTTC...CGTAGGGGGCACCGTGGTAGGTGTCGTACTGATTGGTGTCCTCCTCCTGGTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp CCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTCGGATGACAAAGGACTaGTCCTGGATACACTCGGAA +
Preference number: 4 (lower is better)
Translates to: PRCVCRGEEAWSEGVTSARMTKD*SWIHSE
Trigger: TTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCG...AGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp TGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGGTGAAGTTCAGCTTCTaGCACCAGGAACAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: WILGSTGVSCKPRCVCRGVKFSF*HQEQPG
Trigger: GCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCAC...CCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp TATGCACCTGTTGCATTGGCAGTGGCCACGGCCACTGCACTCTACCAGCCGTGCGGAGTCAGGTTCTCCTaGTCCAGTGAAGTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: YAPVALAVATATALYQPCGVRFS*SSEVQL
Trigger: AAGCTGAACTTCACTGGACCAGGAGAACCTGACTCC...GCACGGCTGGTAGAGTGCAGTGGCCGTGGCCACTGCCAATGCAACAGGTGCATA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTTGCGGCAGCCTGTCCTaGTCGCAAGTAAAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: AERNRAGFWILGSTGVSCCGSLS*SQVKCH
Trigger: GTGACACTTTACTTGCGACCAGGACAGGCTGCCGCA...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp TGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGCAATGGGGTATCCCTTaGCCCGCCGGAAAGTCACAT +
Preference number: 4 (lower is better)
Translates to: WILGSTGVSCKPRCVCRGQWGIP*PAGKSH
Trigger: ATGTGACTTTCCGGCGGGCCAAGGGATACCCCATTG...CCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp ATGGCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCGGTAGTACAGATCAATaGGGTATCCCTTGGCCCGCC +
Preference number: 4 (lower is better)
Translates to: MAERNRAGFWILGSTGVSGSTDQ*GIPWPA
Trigger: GGCGGGCCAAGGGATACCCCATTGATCTGTACTACC...GCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTCATTGGGGGTCAGGATaGCACCCAGTTTGCCATCAC +
Preference number: 4 (lower is better)
Translates to: AERNRAGFWILGSTGVSCHWGSG*HPVCHH
Trigger: GTGATGGCAAACTGGGTGCCATCCTGACCCCCAATG...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTGCTGCACCACGTTGCTaGAGTCGTCAGACAGTTCCC +
Preference number: 4 (lower is better)
Translates to: GWNLLGLGTILRALRQDCAAPRC*SRQTVP
Trigger: GGGAACTGTCTGACGACTCCAGCAACGTGGTGCAGC...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
3UTR CAA 72 bp CCCACCCTCAGGGGCGTCCAGGTTTCCGGAAATCAGTaGCTTGCCGACCTCTGTCTGAAACTGGTTGGAGTT +
Preference number: 4 (lower is better)
Translates to: PTLRGVQVSGNQ*LADLCLKLVGV
Trigger: AACTCCAACCAGTTTCAGACAGAGGTCGGCAAGCAACTGATTTCCGGAAACCTGGACGCCCCTGAGGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS-3UTR TCA 90 bp AGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGGCCGGAAAGTCACATTaGATGCGGCAGCCTGTCCTG +
Preference number: 4 (lower is better)
Translates to: RKCGWNLLGLGTILRALRAGKSH*MRQPVL
Trigger: CAGGACAGGCTGCCGCATTCAATGTGACTTTCCGGC...CCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp AGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGAACCCAGTGCCCGGATaGCAAAGGACTGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: RKCGWNLLGLGTILRALRNPVPG*QRTAPG
Trigger: TCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTT...CCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp CTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACCTCTGGTCCCGGCACTaGCACTCACACTGGGGACGG +
Preference number: 4 (lower is better)
Translates to: LRLLSSFMQENVGGTSWDLWSRH*HSHWGR
Trigger: CCGTCCCCAGTGTGAGTGTCAGTGCCGGGACCAGAG...GTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp CAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCAGCGCCTGTACTCCCTaGGGTCAGTCAGGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: QENVGGTSWDSGQFLGLCSACTP*GQSGGS
Trigger: TGACCCACCTGACTGACCTCAGGGAGTACAGGCGCT...GCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp GAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCGGTAGTACAGATCAATaGGGTATCCCTTGGCCCGCC +
Preference number: 4 (lower is better)
Translates to: ENVGGTSWDSGQFLGLCGGSTDQ*GIPWPA
Trigger: GGCGGGCCAAGGGATACCCCATTGATCTGTACTACC...GCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAATCCGGGAGGGTGCTGTaGTCCAGGAAGACTCTAGAG +
Preference number: 4 (lower is better)
Translates to: KCGWNLLGLGTILRALRQSGRVL*SRKTLE
Trigger: CTCTAGAGTCTTCCTGGACCACAGCACCCTCCCGGA...TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CCTACGATGGCAGCCACATTGGGGCCCTTCACACACTCTAGACTGTCCTCCACAGCCATGACCTTTACCTaGAAGGTGACCGGGTTGTTG +
Preference number: 4 (lower is better)
Translates to: PTMAATLGPFTHSRLSSTAMTFT*KVTGLL
Trigger: CAACAACCCGGTCACCTTCCAGGTAAAGGTCATGGC...TGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp ATGGCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTTGGGGACGTCACTaGTATGGCATACACACTGCC +
Preference number: 4 (lower is better)
Translates to: MAERNRAGFWILGSTGVSCWGRH*YGIHTA
Trigger: GGCAGTGTGTATGCCATACCAGTGACGTCCCCAACA...GCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR TCA 90 bp AGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCAAGAAGGAGTCATAGGTaGCTTTCAGGGTGTCCGGGA +
Preference number: 4 (lower is better)
Translates to: RNRAGFWILGSTGVSCKPRRSHR*LSGCPG
Trigger: TCCCGGACACCCTGAAAGTCACCTATGACTCCTTCT...TGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp GTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTTGATTATAGATACCACACTCCATaGCTCCCTTGCCTCCACAGA +
Preference number: 4 (lower is better)
Translates to: VFAEGRRRGLRGSHLLDYRYHTP*LPCLHR
Trigger: TCTGTGGAGGCAAGGGAGTCATGGAGTGTGGTATCT...ATAATCAAGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTATCCGTGAAACCCAGTaGCCGGATGACAAAGGACTG +
Preference number: 4 (lower is better)
Translates to: GWNLLGLGTILRALRQDCIRETQ*PDDKGL
Trigger: CAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGAT...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp ATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGGAGGCTTGCAACTACATTTaGCACAGTTGCAGGAACCCC +
Preference number: 4 (lower is better)
Translates to: ILGSTGVSCKPRCVCRGEACNYI*HSCRNP
Trigger: GGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAGC...CTCCCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR GCA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTCCGAGTCCCTCTCCTTaGAGGGCTTTTTCTTCAAAG +
Preference number: 4 (lower is better)
Translates to: AERNRAGFWILGSTGVSCPSPSP*RAFSSK
Trigger: CTTTGAAGAAAAAGCCCTGCAAGGAGAGGGACTCGG...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp AAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGTGAAGTTCAGCTTCTaGCACCAGGAACAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: KCGWNLLGLGTILRALRQVKFSF*HQEQPG
Trigger: GCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCAC...TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTTGATTATAGGCCTTCTCCTTGTTaGGACATGGGTTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: VFAEGRRRGLRGSHLLDYRPSPC*DMGSSA
Trigger: AGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCT...ATAATCAAGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACGGCAGCGGCCATCATTaGGGGTCAGGATGGCACCCA +
Preference number: 4 (lower is better)
Translates to: LRLLSSFMQENVGGTSWDGSGHH*GSGWHP
Trigger: TGGGTGCCATCCTGACCCCCAATGATGGCCGCTGCC...GTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp TCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTGGCTGCACCACGTTGCTaGAGTCGTCAGACAGTTCCC +
Preference number: 4 (lower is better)
Translates to: SANLGFMTVVVALLKRGLAAPRC*SRQTVP
Trigger: GGGAACTGTCTGACGACTCCAGCAACGTGGTGCAGC...CAACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
3UTR CAA 72 bp TTCTCAGGATGGGTGTTAACAAAAGGCAGCACCGTCTaGTCCACAAACGACCCAAAGCCGATGCGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: FSGWVLTKGSTV*STNDPKPMRPD
Trigger: GTCTGGCCGCATCGGCTTTGGGTCGTTTGTGGACAAGACGGTGCTGCCTTTTGTTAACACCCATCCTGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 72 bp ACATTTGCCACAGTTGCAGGAACCCCGATCGGGTTGTaGATCTGTACGCCATCACAGTCCCCACGGGATTTG +
Preference number: 4 (lower is better)
Translates to: TFATVAGTPIGL*ICTPSQSPRDL
Trigger: CAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
3UTR CAA 72 bp ACTACATTTGCCACAGTTGCAGGAACCCCGATCGGGTaGTTGATCTGTACGCCATCACAGTCCCCACGGGAT +
Preference number: 4 (lower is better)
Translates to: TTFATVAGTPIG*LICTPSQSPRD
Trigger: ATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGATCGGGGTTCCTGCAACTGTGGCAAATGTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS-3UTR TCA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGTTGCCGACCTCTGTCTaGAACTGGTTGGAGTTGTCG +
Preference number: 4 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKLPTSV*NWLELS
Trigger: CGACAACTCCAACCAGTTTCAGACAGAGGTCGGCAA...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp TTCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTCAGTTCCCCCACTGCTaGCTTGGGGATGATCTCCGT +
Preference number: 4 (lower is better)
Translates to: FSKLGVHDRCRSTLEEGVQFPHC*LGDDLR
Trigger: ACGGAGATCATCCCCAAGTCAGCAGTGGGGGAACTG...AACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGGGATGGCACCCAGTTTaGCATCACCAGCAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKGWHPV*HHQQSG
Trigger: TCCACTTTGCTGGTGATGGCAAACTGGGTGCCATCC...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp CTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAACACACTGCCCACAGATaGAGTCCCCAAGCCCTGAGC +
Preference number: 4 (lower is better)
Translates to: LSSFMQENVGGTSWDSGQHTAHR*SPQALS
Trigger: GCTCAGGGCTTGGGGACTGCATCTGTGGGCAGTGTG...TTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR GCA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGAGGTGTGGTTGTCCCTaGAGTGCGAGCCACAGCTGG +
Preference number: 4 (lower is better)
Translates to: VGATFTETAVFLYARKCGRCGCP*SASHSW
Trigger: CCAGCTGTGGCTCGCACTGCAGGGACAACCACACCT...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR GCA 90 bp TGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGCCACGTTGTGTTTGCAGAGGGTTCAAAGGGATAGTCTaGAGCGTCATACCAGCACAC +
Preference number: 4 (lower is better)
Translates to: WILGSTGVSCKPRCVCRGFKGIV*SVIPAH
Trigger: GTGTGCTGGTATGACGCTGCAGACTATCCCTTTGAA...CCCTCTGCAAACACAACGTGGCTTACAGCTCACCCCAGTGCTGCCAAGGATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp GAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCGGAGTCAGGTTCTCCTaGTCCAGTGAAGTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: ENVGGTSWDSGQFLGLCGGVRFS*SSEVQL
Trigger: AAGCTGAACTTCACTGGACCAGGAGAACCTGACTCC...GCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAAGTGCCGAAAGGCAAATaGGGGCTGGCAGGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: LSSFMQENVGGTSWDSGQVPKGK*GLAGLL
Trigger: GAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCAC...TTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAACAGCAACTTGCATTATaGCATCCAGCCCACCCTCAG +
Preference number: 4 (lower is better)
Translates to: KCGWNLLGLGTILRALRQQQLAL*HPAHPQ
Trigger: CTGAGGGTGGGCTGGATGCCATAATGCAAGTTGCTG...TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGGCCCTGAGCACACGATaGAACTATTGTCCTTCCGAC +
Preference number: 4 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKALSTR*NYCPSD
Trigger: GTCGGAAGGACAATAGTTCCATCGTGTGCTCAGGGC...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR TCA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGGCCGGAAAGTCACATTaGATGCGGCAGCCTGTCCTG +
Preference number: 4 (lower is better)
Translates to: VGATFTETAVFLYARKCGAGKSH*MRQPVL
Trigger: CAGGACAGGCTGCCGCATTCAATGTGACTTTCCGGC...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGAATGTTATCCTCCAGGTaGCAGCGGCCATCATTGGGG +
Preference number: 4 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERMLSSR*QRPSLG
Trigger: CCCCAATGATGGCCGCTGCCACCTGGAGGATAACAT...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp AAGATTGTGCAGGTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATATGCTCCTGGGGTCCATaGTATCATCGGCTGGACAAC +
Preference number: 4 (lower is better)
Translates to: KIVQVGRQVPGNPGRLDICSWGP*YHRLDN
Trigger: GTTGTCCAGCCGATGATATCATGGACCCCAGGAGCA...TATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGACCTGCACAATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp GACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGTGCTCCTGGGGTCCATaGTATCATCGGCTGGACAAC +
Preference number: 4 (lower is better)
Translates to: DCPPHGCCKCSFRPSAAKCSWGP*YHRLDN
Trigger: GTTGTCCAGCCGATGATATCATGGACCCCAGGAGCA...CTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp TGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATCAGTTCCCCCACTGCTaGCTTGGGGATGATCTCCGT +
Preference number: 4 (lower is better)
Translates to: CLPLCKKMWVEPLGTRDNQFPHC*LGDDLR
Trigger: ACGGAGATCATCCCCAAGTCAGCAGTGGGGGAACTG...ATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp TTCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTAGAAGGAGTCATAGGTaGCTTTCAGGGTGTCCGGGA +
Preference number: 4 (lower is better)
Translates to: FSKLGVHDRCRSTLEEGVRRSHR*LSGCPG
Trigger: TCCCGGACACCCTGAAAGTCACCTATGACTCCTTCT...AACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGGCAGTCCCCAAGCCCTaGGCACACGATGGAACTATT +
Preference number: 4 (lower is better)
Translates to: VGATFTETAVFLYARKCGAVPKP*AHDGTI
Trigger: AATAGTTCCATCGTGTGCTCAGGGCTTGGGGACTGC...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR GCA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGAGTATGGCATACACACTaGCCACAGATGCAGTCCCCA +
Preference number: 4 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERVWHTH*PQMQSP
Trigger: TGGGGACTGCATCTGTGGGCAGTGTGTATGCCATAC...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp AAGATTGTGCAGGTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATACAATGGGGTATCCCTTaGCCCGCCGGAAAGTCACAT +
Preference number: 4 (lower is better)
Translates to: KIVQVGRQVPGNPGRLDIQWGIP*PAGKSH
Trigger: ATGTGACTTTCCGGCGGGCCAAGGGATACCCCATTG...TATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGACCTGCACAATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGAAGGCCTTCTCCTTGTTaGGACATGGGTTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERRPSPC*DMGSSA
Trigger: AGCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCT...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CTTTTTCTTCAAAGGGATAGTCTGCAGCGTCATACCAGCACACTGAACACTACAGTGCCGAAAGGCAAATaGGGGCTGGCAGGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: LFLQRDSLQRHTSTLNTTVPKGK*GLAGLL
Trigger: GAGAAGGCCTGCCAGCCCCCATTTGCCTTTCGGCAC...TGTAGTGTTCAGTGTGCTGGTATGACGCTGCAGACTATCCCTTTGAAGAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp TTCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTTTGTCACCGCAAAGATaGGCTGGATGTTGCTCTCGG +
Preference number: 4 (lower is better)
Translates to: FSKLGVHDRCRSTLEEGVLSPQR*AGCCSR
Trigger: CCGAGAGCAACATCCAGCCCATCTTTGCGGTGACAA...AACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp GACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGAGATACCACACTCCATaGCTCCCTTGCCTCCACAGA +
Preference number: 4 (lower is better)
Translates to: DCPPHGCCKCSFRPSAAKRYHTP*LPCLHR
Trigger: TCTGTGGAGGCAAGGGAGTCATGGAGTGTGGTATCT...CTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR TCA 90 bp TTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTTCAGGGCCTTCCAGATaGCCAGGAGGAGGACACCAA +
Preference number: 4 (lower is better)
Translates to: FLYARKCGWNLLGLGTILSGPSR*PGGGHQ
Trigger: TTGGTGTCCTCCTCCTGGTCATCTGGAAGGCCCTGA...AAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR GCA 90 bp AGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGAAAGTCACATTGAATaGGGCAGCCTGTCCTGGTCG +
Preference number: 4 (lower is better)
Translates to: RLLSSFMQENVGGTSWDSESHIE*GSLSWS
Trigger: CGACCAGGACAGGCTGCCGCATTCAATGTGACTTTC...CGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp CAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCCTCAGCTTCTCAGGATaGGTGTTAACAAAAGGCAGC +
Preference number: 4 (lower is better)
Translates to: QENVGGTSWDSGQFLGLCLSFSG*VLTKGS
Trigger: GCTGCCTTTTGTTAACACCCATCCTGAGAAGCTGAG...GCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AAGATTGTGCAGGTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATACTCCTTGTTGGGACATaGGTTCCTCAGCTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: KIVQVGRQVPGNPGRLDILLVGT*VPQLLR
Trigger: CCTGAGAAGCTGAGGAACCCATGTCCCAACAAGGAG...TATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGACCTGCACAATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp ACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGTAAGGCAAATGGGGGCTaGCAGGCCTTCTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: TVLHMDVVNVPSVLLLQSKANGG*QAFSLL
Trigger: CAACAAGGAGAAGGCCTGCCAGCCCCCATTTGCCTT...ACTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGCCATCACCAGCAAAGTaGAAGCCATCGTCTGTGGCA +
Preference number: 4 (lower is better)
Translates to: RLLSSFMQENVGGTSWDSPSPAK*KPSSVA
Trigger: TGCCACAGACGATGGCTTCCACTTTGCTGGTGATGG...CGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGTTGTCACCGCAAAGATaGGCTGGATGTTGCTCTCGG +
Preference number: 4 (lower is better)
Translates to: RLLSSFMQENVGGTSWDSLSPQR*AGCCSR
Trigger: CCGAGAGCAACATCCAGCCCATCTTTGCGGTGACAA...CGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGGCCATGACCTTTACCTaGAAGGTGACCGGGTTGTTG +
Preference number: 4 (lower is better)
Translates to: VGATFTETAVFLYARKCGAMTFT*KVTGLL
Trigger: CAACAACCCGGTCACCTTCCAGGTAAAGGTCATGGC...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
3UTR CAA 72 bp GTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTaGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAA +
Preference number: 4 (lower is better)
Translates to: VFLYARKCGWNL*GLGTILRALRQ
Trigger: TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CAA 72 bp GCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTaGAAGAGGGGGTTGTCATTGTTCCATTGGGACTTG +
Preference number: 4 (lower is better)
Translates to: ANLGFMTVVVAL*KRGLSLFHWDL
Trigger: CAAGTCCCAATGGAACAATGACAACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
3UTR CAA 72 bp TTGTTGATCTGTACGCCATCACAGTCCCCACGGGATTaGCCTATACTCGATGCTCCATTACTGCAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: LLICTPSQSPRD*PILDAPLLQKE
Trigger: CTCCTTCTGCAGTAATGGAGCATCGAGTATAGGCAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS-3UTR GCA 90 bp CTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAACGGATGACAAAGGACTaGTCCTGGATACACTCGGAA +
Preference number: 4 (lower is better)
Translates to: LSSFMQENVGGTSWDSGQRMTKD*SWIHSE
Trigger: TTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCG...TTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp CAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCTCACACTCGCAGTATTaGCCAAAGATCTCTTTGTTG +
Preference number: 4 (lower is better)
Translates to: QENVGGTSWDSGQFLGLCSHSQY*PKISLL
Trigger: CAACAAAGAGATCTTTGGGCAATACTGCGAGTGTGA...GCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp TTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTCAGCAACTTGCATTATaGCATCCAGCCCACCCTCAG +
Preference number: 4 (lower is better)
Translates to: FLYARKCGWNLLGLGTILQQLAL*HPAHPQ
Trigger: CTGAGGGTGGGCTGGATGCCATAATGCAAGTTGCTG...AAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAATTGTCATTGTTCCATTaGGACTTGAGTTTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: KCGWNLLGLGTILRALRQLSLFH*DLSFSF
Trigger: GAAGGAGAAACTCAAGTCCCAATGGAACAATGACAA...TTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CCA 90 bp GGGGGTCACATCTGCTTGATTATGATAACTCATGCTCTAGCTTTCAGCAAACTTCTCCTTGTTGGGACATaGGTTCCTCAGCTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: GGHICLIMITHALAFSKLLLVGT*VPQLLR
Trigger: CCTGAGAAGCTGAGGAACCCATGTCCCAACAAGGAG...AAGTTTGCTGAAAGCTAGAGCATGAGTTATCATAATCAAGCAGATGTGACCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR GCA 90 bp AAGCTTACCTTCCATGGACAGCATGGATGGAAGCTTTATTATTTTTCATACATGATCCGTGAAACCCAGTaGCCGGATGACAAAGGACTG +
Preference number: 4 (lower is better)
Translates to: KLTFHGQHGWKLYYFSYMIRETQ*PDDKGL
Trigger: CAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGAT...CATGTATGAAAAATAATAAAGCTTCCATCCATGCTGTCCATGGAAGGTAAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CCA 90 bp AAGCTTACCTTCCATGGACAGCATGGATGGAAGCTTTATTATTTTTCATACATGCTCAGCTTCTCAGGATaGGTGTTAACAAAAGGCAGC +
Preference number: 4 (lower is better)
Translates to: KLTFHGQHGWKLYYFSYMLSFSG*VLTKGS
Trigger: GCTGCCTTTTGTTAACACCCATCCTGAGAAGCTGAG...CATGTATGAAAAATAATAAAGCTTCCATCCATGCTGTCCATGGAAGGTAAGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS TCA 90 bp CCCTTGCCTCCACAGAGACTCTGCTCCCGACTCTGGTCCCGGCACTaGCACTCACACTGGGGACGGACCTGCACGGTCACTGTATCCGTG +
Preference number: 5 (lower is better)
Translates to: PLPPQRLCSRLWSRH*HSHWGRTCTVTVSV
Trigger: CACGGATACAGTGACCGTGCAGGTCCGTCCCCAGTGTGAGTGTCAGTGCCGGGACCAGAGTCGGGAGCAGAGTCTCTGTGGAGGCAAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS TCA 90 bp GTGCCCGTGTGTCACAGCGCAAGGAGTCAGGTTCTCCTGGTCCAGTaGAGTTCAGCTTCTGGCACCAGGAACAGCCAGGCCCCGACTGGA +
Preference number: 5 (lower is better)
Translates to: VPVCHSARSQVLLVQ*SSASGTRNSQAPTG
Trigger: TCCAGTCGGGGCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCACTGGACCAGGAGAACCTGACTCCTTGCGCTGTGACACACGGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 90 bp CAGCAGCTGTGCCCGTGTGTCACAGCGCAAGGAGTCAGGTTCTCCTaGTCCAGTGAAGTTCAGCTTCTGGCACCAGGAACAGCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: QQLCPCVTAQGVRFS*SSEVQLLAPGTARP
Trigger: GGGCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCACTGGACCAGGAGAACCTGACTCCTTGCGCTGTGACACACGGGCACAGCTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GTACGACACCTACCACGGTGCCCCCTACGATGGCAGCCACATTGGGGCCCTTCATCCCCGCCCAGCTTCTaGACGTTGTTGAGGTCATCA +
Preference number: 5 (lower is better)
Translates to: VRHLPRCPLRWQPHWGPSSPPSF*TLLRSS
Trigger: TGATGACCTCAACAACGTCAAGAAGCTGGGCGGGGA...TGAAGGGCCCCAATGTGGCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTGACTCGGTGATCTCGTaGAGGGCCTGCAGCAAGTCC +
Preference number: 5 (lower is better)
Translates to: AERNRAGFWILGSTGVSCDSVIS*RACSKS
Trigger: GGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTC...ACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GAGGAGGACACCAATCAGTACGACACCTACCACGGTGCCCCCTACGATGGCAGCCGGACATGCAGCAACTaGCATTATGGCATCCAGCCC +
Preference number: 5 (lower is better)
Translates to: EEDTNQYDTYHGAPYDGSRTCSN*HYGIQP
Trigger: GGGCTGGATGCCATAATGCAAGTTGCTGCATGTCCG...GCTGCCATCGTAGGGGGCACCGTGGTAGGTGTCGTACTGATTGGTGTCCTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGTGGCAGCGGCCATCATaGGGGGTCAGGATGGCACCC +
Preference number: 5 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKWQRPS*GVRMAP
Trigger: GGGTGCCATCCTGACCCCCAATGATGGCCGCTGCCA...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp ATGGCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCGCACAAGAGGTGTGGTaGTCCCTGCAGTGCGAGCCA +
Preference number: 5 (lower is better)
Translates to: MAERNRAGFWILGSTGVSAQEVW*SLQCEP
Trigger: TGGCTCGCACTGCAGGGACAACCACACCTCTTGTGC...GCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS TCA 90 bp TTTGCCACAGTTGCAGGAACCCCGATCTGCAGATACCACACTCCATaGCTCCCTTGCCTCCACAGAGACTCTGCTCCCGACTCTGGTCCC +
Preference number: 5 (lower is better)
Translates to: FATVAGTPICRYHTP*LPCLHRDSAPDSGP
Trigger: GGGACCAGAGTCGGGAGCAGAGTCTCTGTGGAGGCAAGGGAGTCATGGAGTGTGGTATCTGCAGATCGGGGTTCCTGCAACTGTGGCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS GCA 90 bp ACACTGGGGACGGACCTGCACGGTCACTGTATCCGTGAAACCCAGTaGCCGGATGACAAAGGACTGCTCCTGGATACACTCGGAAGCCAT +
Preference number: 5 (lower is better)
Translates to: TLGTDLHGHCIRETQ*PDDKGLLLDTLGSH
Trigger: ATGGCTTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGATACAGTGACCGTGCAGGTCCGTCCCCAGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 90 bp GCAGCTCTTACCAGCTTCTGGCACCAGGAACAGCCAGGCCCCGACTaGATACAGTCCCGGCAACTGCTGACTTTGTACTTGGTGCATTCC +
Preference number: 5 (lower is better)
Translates to: AALTSFWHQEQPGPD*IQSRQLLTLYLVHS
Trigger: GGAATGCACCAAGTACAAAGTCAGCAGTTGCCGGGACTGTATCCAGTCGGGGCCTGGCTGTTCCTGGTGCCAGAAGCTGGTAAGAGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS-3UTR CAA 90 bp ATGGCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTCAATGGGGTATCCCTaGGCCCGCCGGAAAGTCACA +
Preference number: 5 (lower is better)
Translates to: MAERNRAGFWILGSTGVSSMGYP*ARRKVT
Trigger: TGTGACTTTCCGGCGGGCCAAGGGATACCCCATTGA...GCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp ATCAAACTTCAGGCACTCGGCACAAGAGGTGTGGTTGTCCCTGCAGTGCGAGCCTGGCAGGCCTTCTCCTaGTTGGGACATGGGTTCCTC +
Preference number: 5 (lower is better)
Translates to: IKLQALGTRGVVVPAVRAWQAFS*LGHGFL
Trigger: GAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCA...GGCTCGCACTGCAGGGACAACCACACCTCTTGTGCCGAGTGCCTGAAGTTTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS CCA 90 bp CCAGTGAAGTTCAGCTTCTGGCACCAGGAACAGCCAGGCCCCGACTaGATACAGTCCCGGCAACTGCTGACTTTGTACTTGGTGCATTCC +
Preference number: 5 (lower is better)
Translates to: PVKFSFWHQEQPGPD*IQSRQLLTLYLVHS
Trigger: GGAATGCACCAAGTACAAAGTCAGCAGTTGCCGGGACTGTATCCAGTCGGGGCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTCAGGCCTTCTCCTTGTaGGGACATGGGTTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: GWNLLGLGTILRALRQDCQAFSL*GHGFLS
Trigger: GCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTG...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp TGGCAGCCACATTGGGGCCCTTCACACACTCTAGACTGTCCTCCACATGGATGTCAGGCCTTCTCCTTGTaGGGACATGGGTTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: WQPHWGPSHTLDCPPHGCQAFSL*GHGFLS
Trigger: GCTGAGGAACCCATGTCCCAACAAGGAGAAGGCCTG...ACATCCATGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS CCA 90 bp ACTGTATCCGTGAAACCCAGTGCCCGGATGACAAAGGACTGCTCCTaGATACACTCGGAAGCCATGACCTTTACCTGGAAGGTGACCGGG +
Preference number: 5 (lower is better)
Translates to: TVSVKPSARMTKDCS*IHSEAMTFTWKVTG
Trigger: CCCGGTCACCTTCCAGGTAAAGGTCATGGCTTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGATACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CCACGTTGTGTTTGCAGAGGGGAGGAGGCGTGGTCTGAGGGGGTCACATCTGCTAGCTTCTTGACGTTGTaGAGGTCATCAAGCATGGAG +
Preference number: 5 (lower is better)
Translates to: PRCVCRGEEAWSEGVTSASFLTL*RSSSME
Trigger: CTCCATGCTTGATGACCTCAACAACGTCAAGAAGCT...AGCAGATGTGACCCCCTCAGACCACGCCTCCTCCCCTCTGCAAACACAACGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CTAGACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCATGGCAGCGGCCATCATaGGGGGTCAGGATGGCACCC +
Preference number: 5 (lower is better)
Translates to: LDCPPHGCCKCSFRPSAAWQRPS*GVRMAP
Trigger: GGGTGCCATCCTGACCCCCAATGATGGCCGCTGCCA...TGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGTCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS GCA 90 bp ACGGTCACTGTATCCGTGAAACCCAGTGCCCGGATGACAAAGGACTaGTCCTGGATACACTCGGAAGCCATGACCTTTACCTGGAAGGTG +
Preference number: 5 (lower is better)
Translates to: TVTVSVKPSARMTKD*SWIHSEAMTFTWKV
Trigger: CACCTTCCAGGTAAAGGTCATGGCTTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGATACAGTGACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS GCA 90 bp CTTTGTTGGGGACGTCACTGGTATGGCATACACACTGCCCACAGATaGAGTCCCCAAGCCCTGAGCACACGATGGAACTATTGTCCTTCC +
Preference number: 5 (lower is better)
Translates to: LCWGRHWYGIHTAHR*SPQALSTRWNYCPS
Trigger: GGAAGGACAATAGTTCCATCGTGTGCTCAGGGCTTGGGGACTGCATCTGTGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS CCA 90 bp TCGCAGTATTGCCCAAAGATCTCTTTGTTGGGGACGTCACTGGTATaGCATACACACTGCCCACAGATGCAGTCCCCAAGCCCTGAGCAC +
Preference number: 5 (lower is better)
Translates to: SQYCPKISLLGTSLV*HTHCPQMQSPSPEH
Trigger: GTGCTCAGGGCTTGGGGACTGCATCTGTGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGGGCAATACTGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS CCA 90 bp CACACTCGCAGTATTGCCCAAAGATCTCTTTGTTGGGGACGTCACTaGTATGGCATACACACTGCCCACAGATGCAGTCCCCAAGCCCTG +
Preference number: 5 (lower is better)
Translates to: HTRSIAQRSLCWGRH*YGIHTAHRCSPQAL
Trigger: CAGGGCTTGGGGACTGCATCTGTGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGGGCAATACTGCGAGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CAA 90 bp ATGGCGGAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCCTGCTGACTTTGTACTaGGTGCATTCCTGGGACACA +
Preference number: 5 (lower is better)
Translates to: MAERNRAGFWILGSTGVSLLTLY*VHSWDT
Trigger: TGTGTCCCAGGAATGCACCAAGTACAAAGTCAGCAG...GCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTCCGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
CDS-3UTR CAA 90 bp CCTACGATGGCAGCCACATTGGGGCCCTTCACACACTCTAGACTGTCCTCCACACCCAGCTTCTTGACGTaGTTGAGGTCATCAAGCATG +
Preference number: 5 (lower is better)
Translates to: PTMAATLGPFTHSRLSSTPSFLT*LRSSSM
Trigger: CATGCTTGATGACCTCAACAACGTCAAGAAGCTGGG...TGTGGAGGACAGTCTAGAGTGTGTGAAGGGCCCCAATGTGGCTGCCATCGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCTGGCAGGCCTTCTCCTaGTTGGGACATGGGTTCCTC +
Preference number: 5 (lower is better)
Translates to: QENVGGTSWDSGQFLGLCWQAFS*LGHGFL
Trigger: GAGGAACCCATGTCCCAACAAGGAGAAGGCCTGCCA...GCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCAAGATTGTGGCTTGCAACTACATTaGCCACAGTTGCAGGAACCC +
Preference number: 5 (lower is better)
Translates to: GWNLLGLGTILRALRQDCGLQLH*PQLQEP
Trigger: GGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAGCC...ACAATCTTGCCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS TCA 90 bp ACTGGTATGGCATACACACTGCCCACAGATGCAGTCCCCAAGCCCTaGGCACACGATGGAACTATTGTCCTTCCGACAGTTTCTCTCCAG +
Preference number: 5 (lower is better)
Translates to: TGMAYTLPTDAVPKP*AHDGTIVLPTVSLQ
Trigger: CTGGAGAGAAACTGTCGGAAGGACAATAGTTCCATCGTGTGCTCAGGGCTTGGGGACTGCATCTGTGGGCAGTGTGTATGCCATACCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS GCA 90 bp CCAAAGATCTCTTTGTTGGGGACGTCACTGGTATGGCATACACACTaGCCACAGATGCAGTCCCCAAGCCCTGAGCACACGATGGAACTA +
Preference number: 5 (lower is better)
Translates to: PKISLLGTSLVWHTH*PQMQSPSPEHTMEL
Trigger: TAGTTCCATCGTGTGCTCAGGGCTTGGGGACTGCATCTGTGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CAA 90 bp TTCAGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTTCAATGGGGTATCCCTaGGCCCGCCGGAAAGTCACA +
Preference number: 5 (lower is better)
Translates to: FSKLGVHDRCRSTLEEGVSMGYP*ARRKVT
Trigger: TGTGACTTTCCGGCGGGCCAAGGGATACCCCATTGA...AACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GAAAGAAACCGAGCAGGCTTTTGGATCCTTGGCAGCACTGGGGTGAGCTGTAAGAAAGGCAGCACCGTCTaGTCCACAAACGACCCAAAG +
Preference number: 5 (lower is better)
Translates to: ERNRAGFWILGSTGVSCKKGSTV*STNDPK
Trigger: CTTTGGGTCGTTTGTGGACAAGACGGTGCTGCCTTT...CTTACAGCTCACCCCAGTGCTGCCAAGGATCCAAAAGCCTGCTCGGTTTCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GTCGGAAGACAAGTCCCTGGAAACCCTGGCAGACTTGATATAATGGCGGAAAGACACTCCATGACTCCCTaGCCTCCACAGAGACTCTGC +
Preference number: 5 (lower is better)
Translates to: VGRQVPGNPGRLDIMAERHSMTP*PPQRLC
Trigger: GCAGAGTCTCTGTGGAGGCAAGGGAGTCATGGAGTG...TCTTTCCGCCATTATATCAAGTCTGCCAGGGTTTCCAGGGACTTGTCTTCCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp AGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGCCCAGCTTCTTGACGTaGTTGAGGTCATCAAGCATG +
Preference number: 5 (lower is better)
Translates to: RKCGWNLLGLGTILRALRPSFLT*LRSSSM
Trigger: CATGCTTGATGACCTCAACAACGTCAAGAAGCTGGG...CCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCAAAGTGTAGACTCGGTGATCTCGTaGAGGGCCTGCAGCAAGTCC +
Preference number: 5 (lower is better)
Translates to: VLHMDVVNVPSVLLLQSVDSVIS*RACSKS
Trigger: GGACTTGCTGCAGGCCCTCAACGAGATCACCGAGTC...TACACTTTGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp AGCAAACTTGGGGTTCATGACCGTTGTCGTAGCACTCTTGAAGAGGGGGTTGTCAAAGGCAGCACCGTCTaGTCCACAAACGACCCAAAG +
Preference number: 5 (lower is better)
Translates to: SKLGVHDRCRSTLEEGVVKGSTV*STNDPK
Trigger: CTTTGGGTCGTTTGTGGACAAGACGGTGCTGCCTTT...GACAACCCCCTCTTCAAGAGTGCTACGACAACGGTCATGAACCCCAAGTTTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp ATCCAACAGCCTTCCGAGTCCCTCTCCTTGCAGGGCTTTTTCTTCAAAGGGATAAGGATGGCACCCAGTTaGCCATCACCAGCAAAGTGG +
Preference number: 5 (lower is better)
Translates to: IQQPSESLSLQGFFFKGIRMAPS*PSPAKW
Trigger: CCACTTTGCTGGTGATGGCAAACTGGGTGCCATCCT...TATCCCTTTGAAGAAAAAGCCCTGCAAGGAGAGGGACTCGGAAGGCTGTTGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp AGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGTCCCCCACTGCTGACTaGGGGATGATCTCCGTGAGT +
Preference number: 5 (lower is better)
Translates to: RLLSSFMQENVGGTSWDSSPTAD*GMISVS
Trigger: ACTCACGGAGATCATCCCCAAGTCAGCAGTGGGGGA...CGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CTAGACTGTCCTCCACATGGATGTTGTAAATGTTCCTTCCGTCCTTCTGCTGCACACTCCATGACTCCCTaGCCTCCACAGAGACTCTGC +
Preference number: 5 (lower is better)
Translates to: LDCPPHGCCKCSFRPSAAHSMTP*PPQRLC
Trigger: GCAGAGTCTCTGTGGAGGCAAGGGAGTCATGGAGTG...TGCAGCAGAAGGACGGAAGGAACATTTACAACATCCATGTGGAGGACAGTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS TCA 90 bp ACCGGGCTTGCAACTACATTTGCCACAGTTGCAGGAACCCCGATCTaGGCCACCGCAGACTTGGCTGTTATATCTCTCACAGTTGACATT +
Preference number: 5 (lower is better)
Translates to: TGLATTFATVAGTPI*ATADLAVISLTVDI
Trigger: AATGTCAACTGTGAGAGATATAACAGCCAAGTCTGCGGTGGCTCAGATCGGGGTTCCTGCAACTGTGGCAAATGTAGTTGCAAGCCCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS-3UTR CAA 90 bp CTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATCCCCGCCCAGCTTCTaGACGTTGTTGAGGTCATCA +
Preference number: 5 (lower is better)
Translates to: LSSFMQENVGGTSWDSGQSPPSF*TLLRSS
Trigger: TGATGACCTCAACAACGTCAAGAAGCTGGGCGGGGA...TTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACCGGACATGCAGCAACTaGCATTATGGCATCCAGCCC +
Preference number: 5 (lower is better)
Translates to: LRLLSSFMQENVGGTSWDRTCSN*HYGIQP
Trigger: GGGCTGGATGCCATAATGCAAGTTGCTGCATGTCCG...GTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGAGGATGGCACCCAGTTaGCCATCACCAGCAAAGTGG +
Preference number: 5 (lower is better)
Translates to: VGATFTETAVFLYARKCGRMAPS*PSPAKW
Trigger: CCACTTTGCTGGTGATGGCAAACTGGGTGCCATCCT...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GTTCTTCTCAAAAGGGCCCTTATCAAACTTCAGGCACTCGGCACAAGAGGTGTGCTGCTGACTTTGTACTaGGTGCATTCCTGGGACACA +
Preference number: 5 (lower is better)
Translates to: VLLKRALIKLQALGTRGVLLTLY*VHSWDT
Trigger: TGTGTCCCAGGAATGCACCAAGTACAAAGTCAGCAG...CACACCTCTTGTGCCGAGTGCCTGAAGTTTGATAAGGGCCCTTTTGAGAAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000153541.2
ENSMUST00000156644.8
CDS-3UTR CAA 90 bp GTTGGGGCCACCTTTACTGAGACTGCTGTCTTCCTTTATGCAAGAAAATGTGGGGTTTCCGGAAATCAGTaGCTTGCCGACCTCTGTCTG +
Preference number: 5 (lower is better)
Translates to: VGATFTETAVFLYARKCGVSGNQ*LADLCL
Trigger: CAGACAGAGGTCGGCAAGCAACTGATTTCCGGAAAC...CCCACATTTTCTTGCATAAAGGAAGACAGCAGTCTCAGTAAAGGTGGCCCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp AGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAATTCTTAGGGCTCTGCGGAACTCATTGCTCCTCTaGTACATGTTATCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: RKCGWNLLGLGTILRALRNSLLL*YMLSSR
Trigger: CCTGGAGGATAACATGTACAAGAGGAGCAATGAGTT...CCGCAGAGCCCTAAGAATTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CTTTTTCTTCAAAGGGATAGTCTGCAGCGTCATACCAGCACACTGAACACTACATCCCCCACTGCTGACTaGGGGATGATCTCCGTGAGT +
Preference number: 5 (lower is better)
Translates to: LFLQRDSLQRHTSTLNTTSPTAD*GMISVS
Trigger: ACTCACGGAGATCATCCCCAAGTCAGCAGTGGGGGA...TGTAGTGTTCAGTGTGCTGGTATGACGCTGCAGACTATCCCTTTGAAGAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CTGTCTTCCTTTATGCAAGAAAATGTGGGTGGAACCTCTTGGGACTCGGGACAACTGCTGACTTTGTACTaGGTGCATTCCTGGGACACA +
Preference number: 5 (lower is better)
Translates to: LSSFMQENVGGTSWDSGQLLTLY*VHSWDT
Trigger: TGTGTCCCAGGAATGCACCAAGTACAAAGTCAGCAG...TTGTCCCGAGTCCCAAGAGGTTCCACCCACATTTTCTTGCATAAAGGAAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
CDS-3UTR CAA 90 bp ACTGAACACTACAGTTCTTCTCAAAAGGGCCCTTATCAAACTTCAGGCACTCGGGTTTCCGGAAATCAGTaGCTTGCCGACCTCTGTCTG +
Preference number: 5 (lower is better)
Translates to: TEHYSSSQKGPYQTSGTRVSGNQ*LADLCL
Trigger: CAGACAGAGGTCGGCAAGCAACTGATTTCCGGAAAC...CCGAGTGCCTGAAGTTTGATAAGGGCCCTTTTGAGAAGAACTGTAGTGTTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp GGGGGTCACATCTGCTTGATTATGATAACTCATGCTCTAGCTTTCAGCAAACTTAACTCATTGCTCCTCTaGTACATGTTATCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: GGHICLIMITHALAFSKLNSLLL*YMLSSR
Trigger: CCTGGAGGATAACATGTACAAGAGGAGCAATGAGTT...AAGTTTGCTGAAAGCTAGAGCATGAGTTATCATAATCAAGCAGATGTGACCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS-3UTR CAA 90 bp CACAAAGCTTACCTTCCATGGACAGCATGGATGGAAGCTTTATTATTTTTCATAAGCTTCTTGACGTTGTaGAGGTCATCAAGCATGGAG +
Preference number: 5 (lower is better)
Translates to: HKAYLPWTAWMEALLFFISFLTL*RSSSME
Trigger: CTCCATGCTTGATGACCTCAACAACGTCAAGAAGCT...TATGAAAAATAATAAAGCTTCCATCCATGCTGTCCATGGAAGGTAAGCTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS TCA 72 bp CCACAGAGACTCTGCTCCCGACTCTGGTCCCGGCACTaGCACTCACACTGGGGACGGACCTGCACGGTCACT +
Preference number: 6 (lower is better)
Translates to: PQRLCSRLWSRH*HSHWGRTCTVT
Trigger: AGTGACCGTGCAGGTCCGTCCCCAGTGTGAGTGTCAGTGCCGGGACCAGAGTCGGGAGCAGAGTCTCTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS TCA 72 bp TGTCACAGCGCAAGGAGTCAGGTTCTCCTGGTCCAGTaGAGTTCAGCTTCTGGCACCAGGAACAGCCAGGCC +
Preference number: 6 (lower is better)
Translates to: CHSARSQVLLVQ*SSASGTRNSQA
Trigger: GGCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCACTGGACCAGGAGAACCTGACTCCTTGCGCTGTGACA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS TCA 72 bp GTTGCAGGAACCCCGATCTGCAGATACCACACTCCATaGCTCCCTTGCCTCCACAGAGACTCTGCTCCCGAC +
Preference number: 6 (lower is better)
Translates to: VAGTPICRYHTP*LPCLHRDSAPD
Trigger: GTCGGGAGCAGAGTCTCTGTGGAGGCAAGGGAGTCATGGAGTGTGGTATCTGCAGATCGGGGTTCCTGCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153541.2
CDS CCA 72 bp GAGTCAGGTTCTCCTGGTCCAGTGAAGTTCAGCTTCTaGCACCAGGAACAGCCAGGCCCCGACTGGATACAG +
Preference number: 6 (lower is better)
Translates to: ESGSPGPVKFSF*HQEQPGPDWIQ
Trigger: CTGTATCCAGTCGGGGCCTGGCTGTTCCTGGTGCCAGAAGCTGAACTTCACTGGACCAGGAGAACCTGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 72 bp ACCAGCTTCTGGCACCAGGAACAGCCAGGCCCCGACTaGATACAGTCCCGGCAACTGCTGACTTTGTACTTG +
Preference number: 6 (lower is better)
Translates to: TSFWHQEQPGPD*IQSRQLLTLYL
Trigger: CAAGTACAAAGTCAGCAGTTGCCGGGACTGTATCCAGTCGGGGCCTGGCTGTTCCTGGTGCCAGAAGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156644.8
CDS CAA 90 bp CCAGGCCCCGACTGGATACAGTCCCGGCAACTGCTGACTTTGTACTaGGTGCATTCCTGGGACACAGCAGATCCCAGGAAGAACAGTCCA +
Preference number: 6 (lower is better)
Translates to: PGPDWIQSRQLLTLY*VHSWDTADPRKNSP
Trigger: TGGACTGTTCTTCCTGGGATCTGCTGTGTCCCAGGAATGCACCAAGTACAAAGTCAGCAGTTGCCGGGACTGTATCCAGTCGGGGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
CDS TCA 72 bp TGTAGCCAGACTCACACCTGCAGATACCACACTCCATaGCTCCCTTGCCTCCACAGAGACTCTGCTCCCGAC +
Preference number: 6 (lower is better)
Translates to: CSQTHTCRYHTP*LPCLHRDSAPD
Trigger: GTCGGGAGCAGAGTCTCTGTGGAGGCAAGGGAGTCATGGAGTGTGGTATCTGCAGGTGTGAGTCTGGCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS GCA 72 bp ACGGACCTGCACGGTCACTGTATCCGTGAAACCCAGTaGCCGGATGACAAAGGACTGCTCCTGGATACACTC +
Preference number: 6 (lower is better)
Translates to: TDLHGHCIRETQ*PDDKGLLLDTL
Trigger: GAGTGTATCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGATACAGTGACCGTGCAGGTCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 72 bp TTCAGCTTCTGGCACCAGGAACAGCCAGGCCCCGACTaGATACAGTCCCGGCAACTGCTGACTTTGTACTTG +
Preference number: 6 (lower is better)
Translates to: FSFWHQEQPGPD*IQSRQLLTLYL
Trigger: CAAGTACAAAGTCAGCAGTTGCCGGGACTGTATCCAGTCGGGGCCTGGCTGTTCCTGGTGCCAGAAGCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 72 bp TGCCCGTGTGTCACAGCGCAAGGAGTCAGGTTCTCCTaGTCCAGTGAAGTTCAGCTTCTGGCACCAGGAACA +
Preference number: 6 (lower is better)
Translates to: CPCVTAQGVRFS*SSEVQLLAPGT
Trigger: TGTTCCTGGTGCCAGAAGCTGAACTTCACTGGACCAGGAGAACCTGACTCCTTGCGCTGTGACACACGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 72 bp GCCCACAGATGCAGTCCCCAAGCCCTGAGCACACGATaGAACTATTGTCCTTCCGACAGTTTCTCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: AHRCSPQALSTR*NYCPSDSFSPA
Trigger: AGCTGGAGAGAAACTGTCGGAAGGACAATAGTTCCATCGTGTGCTCAGGGCTTGGGGACTGCATCTGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS CAA 72 bp TCGGAAGCCATGACCTTTACCTGGAAGGTGACCGGGTaGTTGATCTGTACGCCATCACAGTCCCCACGGGAT +
Preference number: 6 (lower is better)
Translates to: SEAMTFTWKVTG*LICTPSQSPRD
Trigger: ATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGGTCACCTTCCAGGTAAAGGTCATGGCTTCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS GCA 72 bp GTATCCGTGAAACCCAGTGCCCGGATGACAAAGGACTaGTCCTGGATACACTCGGAAGCCATGACCTTTACC +
Preference number: 6 (lower is better)
Translates to: VSVKPSARMTKD*SWIHSEAMTFT
Trigger: GGTAAAGGTCATGGCTTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTTTCACGGATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 72 bp GTGAAACCCAGTGCCCGGATGACAAAGGACTGCTCCTaGATACACTCGGAAGCCATGACCTTTACCTGGAAG +
Preference number: 6 (lower is better)
Translates to: VKPSARMTKDCS*IHSEAMTFTWK
Trigger: CTTCCAGGTAAAGGTCATGGCTTCCGAGTGTATCCAGGAGCAGTCCTTTGTCATCCGGGCACTGGGTTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CCA 72 bp TGCCCAAAGATCTCTTTGTTGGGGACGTCACTGGTATaGCATACACACTGCCCACAGATGCAGTCCCCAAGC +
Preference number: 6 (lower is better)
Translates to: CPKISLLGTSLV*HTHCPQMQSPS
Trigger: GCTTGGGGACTGCATCTGTGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS CAA 72 bp GACTGGATACAGTCCCGGCAACTGCTGACTTTGTACTaGGTGCATTCCTGGGACACAGCAGATCCCAGGAAG +
Preference number: 6 (lower is better)
Translates to: DWIQSRQLLTLY*VHSWDTADPRK
Trigger: CTTCCTGGGATCTGCTGTGTCCCAGGAATGCACCAAGTACAAAGTCAGCAGTTGCCGGGACTGTATCCAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
ENSMUST00000156644.8
CDS CAA 72 bp GAAGCCATGACCTTTACCTGGAAGGTGACCGGGTTGTaGATCTGTACGCCATCACAGTCCCCACGGGATTTG +
Preference number: 6 (lower is better)
Translates to: EAMTFTWKVTGL*ICTPSQSPRDL
Trigger: CAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGGTCACCTTCCAGGTAAAGGTCATGGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CAA 90 bp ATACACTCGGAAGCCATGACCTTTACCTGGAAGGTGACCGGGTTGTaGATCTGTACGCCATCACAGTCCCCACGGGATTTGCCTATACTC +
Preference number: 6 (lower is better)
Translates to: IHSEAMTFTWKVTGL*ICTPSQSPRDLPIL
Trigger: GAGTATAGGCAAATCCCGTGGGGACTGTGATGGCGTACAGATCAACAACCCGGTCACCTTCCAGGTAAAGGTCATGGCTTCCGAGTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000299.14
ENSMUST00000153541.2
CDS CAA 90 bp CAGTTGACATTGTCACACTCGCAGTATTGCCCAAAGATCTCTTTGTaGGGGACGTCACTGGTATGGCATACACACTGCCCACAGATGCAG +
Preference number: 6 (lower is better)
Translates to: QLTLSHSQYCPKISL*GTSLVWHTHCPQMQ
Trigger: CTGCATCTGTGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGGGCAATACTGCGAGTGTGACAATGTCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS CAA 72 bp TTGTCACACTCGCAGTATTGCCCAAAGATCTCTTTGTaGGGGACGTCACTGGTATGGCATACACACTGCCCA +
Preference number: 6 (lower is better)
Translates to: LSHSQYCPKISL*GTSLVWHTHCP
Trigger: TGGGCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGGGCAATACTGCGAGTGTGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14
CDS CAA 72 bp ACATTGTCACACTCGCAGTATTGCCCAAAGATCTCTTaGTTGGGGACGTCACTGGTATGGCATACACACTGC +
Preference number: 6 (lower is better)
Translates to: TLSHSQYCPKIS*LGTSLVWHTHC
Trigger: GCAGTGTGTATGCCATACCAGTGACGTCCCCAACAAAGAGATCTTTGGGCAATACTGCGAGTGTGACAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000299.14