RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ITGAE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005947

Ensembl transcript IDs: ENSMUST00000006101.4

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCATAGTGTGTGGCTATaGACAACACTCTACAGTTCT +
Preference number: 2 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNHSVWL*TTLYSS
Trigger: AGAACTGTAGAGTGTTGTTCATAGCCACACACTATG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
3UTR TCA 72 bp ATAGTGTGTGGCTATGAACAACACTCTACAGTTCTTTaGTGTTGCTTGATCGTCCTAAGGAGAGTAAGGGGC +
Preference number: 3 (lower is better)
Translates to: IVCGYEQHSTVL*CCLIVLRRVRG
Trigger: GCCCCTTACTCTCCTTAGGACGATCAAGCAACATCAAAGAACTGTAGAGTGTTGTTCATAGCCACACACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGCTGGCCCCGTCACCTaGCCCAAAACCCTCCAGAGG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFAGPVT*PKTLQR
Trigger: CCTCTGGAGGGTTTTGGGGCAGGTGACGGGGCCAGC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCCGGCGTCTCCTGGCTaGCTTCTTCTCCTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFPASPG*LLLLPC
Trigger: ACAGGGGAGGAGAAGAAGTCAGCCAGGAGACGCCGG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCCACACGCAGGCTCTTaGCTCTGGGTGCACTCAGTG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFPHAGS*LWVHSV
Trigger: CACTGAGTGCACCCAGAGTCAAGAGCCTGCGTGTGG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCCCCACGGAGCTTGTaGCTTGGAGCCCCTGCCACG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNAPRSL*LGAPAT
Trigger: CGTGGCAGGGGCTCCAAGGCACAAGCTCCGTGGGGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCCGGTGCACCTGGCTaGAGTGCTGTGACCCAGGCC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNAGAPG*SAVTQA
Trigger: GGCCTGGGTCACAGCACTCCAGCCAGGTGCACCGGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCTGTCCGGCGTCTCCTaGCTGACTTCTTCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFLSGVS*LTSSPP
Trigger: GGGAGGAGAAGAAGTCAGCCAGGAGACGCCGGACAG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCTGTCAGCCTTCAGCTaGGCCCTCCTTGTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFLSAFS*ALLVLS
Trigger: GGAGAGCACAAGGAGGGCCCAGCTGAAGGCTGACAG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCCCACCACCAGTTCCTaGTGGGAGATGTTGGTGGTC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFPTTSS*WEMLVV
Trigger: GACCACCAACATCTCCCAGCAGGAACTGGTGGTGGG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTCCTCCTTGGCTGTCTaGTTTAGGAAGCAGCCCCGG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSSLAV*FRKQPR
Trigger: CCGGGGCTGCTTCCTAAACCAGACAGCCAAGGAGGA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGGTCCAGGGTGGGGTTaGGGTAGTCCCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNGPGWG*GSPSFP
Trigger: GGGGAAGGAGGGACTACCCCAACCCCACCCTGGACC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCTGGCTGGAGTGCTGTaGCCCAGGCCCAGTCCACAT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNLAGVL*PRPSPH
Trigger: ATGTGGACTGGGCCTGGGTCACAGCACTCCAGCCAG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTTGTTGCTGGGGTCTTaGTGCAGAAGGGAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFLLLGS*CRRELS
Trigger: GCTCAGCTCCCTTCTGCATCAAGACCCCAGCAACAA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCTGAGCACAGCCGGTaGACCTGGCTGGAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNAEHSR*TWLECC
Trigger: ACAGCACTCCAGCCAGGTGCACCGGCTGTGCTCAGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATCACGGCCCCATACTaGACCAGGGCAAAGTTGCAC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFITAPY*TRAKLH
Trigger: GTGCAACTTTGCCCTGGTGCAGTATGGGGCCGTGAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCCCGGCCATTCTGTGTaGTGTAGAGCAGCGCACCCC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNPGHSV*CRAAHP
Trigger: GGGGTGCGCTGCTCTACAGCACACAGAATGGCCGGG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCTCGAGTCCTCACACTaGAGCCTCTGCCTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFLESSH*SLCLCL
Trigger: CAAGCAAAGGCAGAGGCTGCAGTGTGAGGACTCGAG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAAATTGAAGGCTCCCTaGGGCTTCAGGCTGGCCATG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFKLKAP*GFRLAM
Trigger: CATGGCCAGCCTGAAGCCCCAGGGAGCCTTCAATTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCATCACCCACCCCAATaGCAAAGCGCACAACACCCT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFHHPPQ*QSAQHP
Trigger: AGGGTGTTGTGCGCTTTGCCATTGGGGTGGGTGATG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGCCTCTGCCTTTGCTTaGTCACATCCACATCCACCG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFASAFA*SHPHPP
Trigger: CGGTGGATGTGGATGTGACCAAGCAAAGGCAGAGGC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTTCCGGGCCTGTACCTaGATGCACACCAAAACACCA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFFRACT*MHTKTP
Trigger: TGGTGTTTTGGTGTGCATTCAGGTACAGGCCCGGAA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGGCACCCGTGAGCTCTaGGTTGAGGCTGCGGAACTT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNGTREL*VEAAEL
Trigger: AAGTTCCGCAGCCTCAACTCAGAGCTCACGGGTGCC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGGGTTCAATGCTTCCTaGGCCATCCAGGACAATAGC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFGFNAS*AIQDNS
Trigger: GCTATTGTCCTGGATGGCTCAGGAAGCATTGAACCC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGGCAGGTCTGGTTGTTaGTGGGGTCTTGATGCAGAA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFGRSGC*WGLDAE
Trigger: TTCTGCATCAAGACCCCAGCAACAACCAGACCTGCC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTTGGTGAGCCCAGGGTaGCCACTCAGTGTGTGTGCC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNLVSPG*PLSVCA
Trigger: GGCACACACACTGAGTGGGCACCCTGGGCTCACCAA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAGGTCTGGTTGTTGCTaGGGTCTTGATGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFRSGCC*GLDAEG
Trigger: CCCTTCTGCATCAAGACCCCAGCAACAACCAGACCT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCTGGTACCTGCCCTTTaGCATACAGATGTGCTCCAC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFLVPAL*HTDVLH
Trigger: GTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCCCTTGTCCAGGATCTaGGCACTGAAACCAGTCTGT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFPLSRI*ALKPVC
Trigger: ACAGACTGGTTTCAGTGCCCAGATCCTGGACAAGGG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTGTAGTGGTCCAGGGTaGGGTTGGGGTAGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNCSGPG*GWGSPS
Trigger: GGAGGGACTACCCCAACCCCACCCTGGACCACTACA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAGGGCAGCTGGAAGATaGCAGAGGGTTCCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFRAAGR*QRVPCS
Trigger: ACTACAAGGAACCCTCTGCCATCTTCCAGCTGCCCT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGTGATCTTCGTCCTGTaGTTCTCTGCATTCAGCCCC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFVIFVL*FSAFSP
Trigger: GGGGCTGAATGCAGAGAACCACAGGACGAAGATCAC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAGTAGTTGGTCACCTTaGAAGTGTGGGCCTCTTTGG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSSWSP*KCGPLW
Trigger: CCAAAGAGGCCCACACTTTCAAGGTGACCAACTACT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAAGGCATGTCTGAATTaGAGGCTGCGTGTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFKACLN*RLRVSL
Trigger: CAGAGAGACACGCAGCCTTCAATTCAGACATGCCTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTTTGGCATACAGATGTaGTCCACTGGCTGGCAAGCA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFFGIQM*STGWQA
Trigger: TGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAAGCGCACAACACCCTaGATCTTTGGGGAGTTGATG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFKRTTP*IFGELM
Trigger: CATCAACTCCCCAAAGATGCAGGGTGTTGTGCGCTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCCTGGGGCTTCAGGCTaGCCATGCAGAGAAGGGTAT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNPGASG*PCREGY
Trigger: ATACCCTTCTCTGCATGGCCAGCCTGAAGCCCCAGG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTACCAATGTCACTCCCTaGTACCTGCCCTTTGGCATA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFTNVTP*YLPFGI
Trigger: TATGCCAAAGGGCAGGTACCAGGGAGTGACATTGGT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATGTTGGTGGTCAGCTaGATCTCAGCGATGCAGAAC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFMLVVS*ISAMQN
Trigger: GTTCTGCATCGCTGAGATCCAGCTGACCACCAACAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGGCCTCTTTGGGGTCTaGGGCAATCAGCTTCAGTTC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNGLFGV*GNQLQF
Trigger: GAACTGAAGCTGATTGCCTCAGACCCCAAAGAGGCC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCCAGGATCTGGGCACTaGAACCAGTCTGTGCGAGTT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNPGSGH*NQSVRV
Trigger: AACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGTTCATGTACATCACTaGGGGTCTGGAAAGAACTGC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFVHVHH*GSGKNC
Trigger: GCAGTTCTTTCCAGACCCTCAGTGATGTACATGAAC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCACTCAGTGTGGTCCTaGGTCTTTGTCAGATTCTTC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFHSVWS*VFVRFF
Trigger: GAAGAATCTGACAAAGACTCAGGACCACACTGAGTG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGGTACACATAGACTCTaGCTTCTTCTCCACGGATGT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFGTHRL*LLLHGC
Trigger: ACATCCGTGGAGAAGAAGGCAGAGTCTATGTGTACC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCTCTTGACTCTGGGTaGACTCAGTGTGGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNALDSG*TQCGPE
Trigger: CTCAGGACCACACTGAGTGCACCCAGAGTCAAGAGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATGTGCTCCACTGGCTaGCAAGCAATTTCATCTGGA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFMCSTG*QAISSG
Trigger: TCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAACACCCTGCATCTTTaGGGAGTTGATGACAGTCGT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFNTLHL*GVDDSR
Trigger: ACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAGTCCACATCCAAATTaGAGGCTCCCTGGGGCTTCA +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSPHPN*RLPGAS
Trigger: TGAAGCCCCAGGGAGCCTTCAATTTGGATGTGGACT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCAGCCCATCCAGAGCTaGGTAGTTGGTCACCTTGAA +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNQPIQS*VVGHLE
Trigger: TTCAAGGTGACCAACTACTCAGCTCTGGATGGGCTG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTCACAGATGATCTCTTaGGTATGGGGTGACCAATCT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSQMIS*VWGDQS
Trigger: AGATTGGTCACCCCATACTCAAGAGATCATCTGTGA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCTTCAGGCTGGCCATaGAGAGAAGGGTATGGAAGA +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNASGWP*REGYGR
Trigger: TCTTCCATACCCTTCTCTGCATGGCCAGCCTGAAGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTCTTCTCCTCCCCTGTaGTGCCTCCTTTGCTTCTAC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSSPPL*CLLCFY
Trigger: GTAGAAGCAAAGGAGGCAGCACAGGGGAGGAGAAGA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGTTGTTATTCTTGAATaGATCACCCACCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFVVILE*ITHPNG
Trigger: GCCATTGGGGTGGGTGATGCATTCAAGAATAACAAC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCCCACTCAGTGTGTGTaGCAAGGAGAAGGAAGCATC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNPTQCV*QGEGSI
Trigger: GATGCTTCCTTCTCCTTGGCACACACACTGAGTGGG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTCACACTGCAGCCTCTaGCTTTGCTTGGTCACATCC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSHCSL*LCLVTS
Trigger: GGATGTGACCAAGCAAAGGCAGAGGCTGCAGTGTGA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTGCCATTCTTTTACATaGTGCACAGGATCGCTTCCA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFCHSFT*CTGSLP
Trigger: TGGAAGCGATCCTGTGCAGCATGTAAAAGAATGGCA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGCACAGACCACTGAATaGCATTCTTTTACATGCTGC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFAQTTE*HSFTCC
Trigger: GCAGCATGTAAAAGAATGGCATTCAGTGGTCTGTGC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCTGGGCCCTCCTTGTaGTCTCCAAGTTCAGTTGTT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNAGPSL*SPSSVV
Trigger: AACAACTGAACTTGGAGAGCACAAGGAGGGCCCAGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTCACCTTGAAAGTGTaGGCCTCTTTGGGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNVTLKV*ASLGSE
Trigger: CTCAGACCCCAAAGAGGCCCACACTTTCAAGGTGAC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTCCTGGAGTCCTCCTTaGCTGTCTGGTTTAGGAAGC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSWSPP*LSGLGS
Trigger: GCTTCCTAAACCAGACAGCCAAGGAGGACTCCAGGA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCAGGACAGAAGCAACTaGCTTGGGGTCATCACACTG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNQDRSN*LGVITL
Trigger: CAGTGTGATGACCCCAAGCCAGTTGCTTCTGTCCTG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGGCTGCGTGTCTCTCTaGCCAAAGACTTCTCATTGG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNGCVSL*PKTSHW
Trigger: CCAATGAGAAGTCTTTGGCCAGAGAGACACGCAGCC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTGGTCAGAAGGGCTTTaGCTTGTGTTCATGTACATC +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFWSEGL*LVFMYI
Trigger: GATGTACATGAACACAAGCCAAAGCCCTTCTGACCA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAAGTGTTGTTATTCTTaGATGCATCACCCACCCCAA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFKCCYS*MHHPPQ
Trigger: TTGGGGTGGGTGATGCATTCAAGAATAACAACACTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAGTCTGAGGGTTCAATaGTTCCTGAGCCATCCAGGA +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSLRVQ*FLSHPG
Trigger: TCCTGGATGGCTCAGGAAGCATTGAACCCTCAGACT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATATATTGTCTAGGACATaGTGCATGGCTGAGGCGGTC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNILSRT*CMAEAV
Trigger: GACCGCCTCAGCCATGCAGCATGTCCTAGACAATAT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATGGGGACACAAATTTaGAACTGGAATACAGCTCCA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFMGTQI*NWNTAP
Trigger: TGGAGCTGTATTCCAGTTGCAAATTTGTGTCCCCAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGCAAGCAATTTCATCTaGACTGATGGATATAGCGCA +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFASNFI*TDGYSA
Trigger: TGCGCTATATCCATCAGTCCAGATGAAATTGCTTGC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAGATCAAACTCAGTCTaGATCACGGCCCCATACTGC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNRSNSV*ITAPYC
Trigger: GCAGTATGGGGCCGTGATCCAGACTGAGTTTGATCT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTGTACTGTACAGTCCTaGAGTCCTCCTTGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNCTVQS*SPPWLS
Trigger: AGACAGCCAAGGAGGACTCCAGGACTGTACAGTACA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTCTGTGAATTTGTCTTaGTTGATATCCCCCACAGCT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSVNLS*LISPTA
Trigger: AGCTGTGGGGGATATCAACCAAGACAAATTCACAGA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCCAAAGACTTCTCATTaGAATTGGAGATGGTCACAG +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFPKTSH*NWRWSQ
Trigger: CTGTGACCATCTCCAATTCCAATGAGAAGTCTTTGG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAGTTTCTGGGATAATTaGGAGCCATGTTTGTCATGT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSFWDN*EPCLSC
Trigger: ACATGACAAACATGGCTCTCAATTATCCCAGAAACT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCAATCTTGCAGTTCATaGCCAGGACAGAAGCAACTG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNQSCSS*PGQKQL
Trigger: CAGTTGCTTCTGTCCTGGTCATGAACTGCAAGATTG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGGGCCTGTACCTGAATaGACACCAAAACACCATTGT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNGPVPE*TPKHHC
Trigger: ACAATGGTGTTTTGGTGTGCATTCAGGTACAGGCCC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAAGAAGAATTCTTTGTaGTCAGAAGGGCTTTGGCTT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFKKNSL*SEGLWL
Trigger: AAGCCAAAGCCCTTCTGACCACAAAGAATTCTTCTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAGCCACGGCTTGGAATaGAGATATTGTCTAGGACAT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSHGLE*RYCLGH
Trigger: ATGTCCTAGACAATATCTTCATTCCAAGCCGTGGCT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGCACCAGGGCAAAGTTaGACTCAAAACACTTCTCAT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNAPGQS*TQNTSH
Trigger: ATGAGAAGTGTTTTGAGTGCAACTTTGCCCTGGTGC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATACTGAAACCAGTCTGTaGGAGTTGATATTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNTETSL*ELILKG
Trigger: GCCCTTCAATATCAACTCGCACAGACTGGTTTCAGT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCATTCTTTTACATGCTaGACAGGATCGCTTCCACAC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNHSFTC*TGSLPH
Trigger: GTGTGGAAGCGATCCTGTGCAGCATGTAAAAGAATG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATCACACTGAACATCTaGAGATACTGGCTTTTGTAT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFITLNI*RYWLLY
Trigger: ATACAAAAGCCAGTATCTCCAGATGTTCAGTGTGAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTCTCCCCATGCACATTaGAGAAGAATTCTTTGTGGT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSPHAH*RRILCG
Trigger: ACCACAAAGAATTCTTCTTCAATGTGCATGGGGAGA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR TCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGATAGCACAGACCACTaGATGCCATTCTTTTACATG +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNDSTDH*MPFFYM
Trigger: CATGTAAAAGAATGGCATTCAGTGGTCTGTGCTATC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGGTCACAGTGATATCTaGTGTCCTATTTGGAAAGAC +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNGHSDI*CPIWKD
Trigger: GTCTTTCCAAATAGGACAGCAGATATCACTGTGACC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR GCA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAAAAGATTCTCCCCATaGACATTGAAGAAGAATTCT +
Preference number: 4 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFKRFSP*TLKKNS
Trigger: AGAATTCTTCTTCAATGTGCATGGGGAGAATCTTTT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CCA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCCAGTAGAAAATCTGTaGTCCCATCCATGTCGATAT +
Preference number: 4 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNPVENL*SHPCRY
Trigger: ATATCGACATGGATGGGACCACAGATTTTCTACTGG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp GTTGTTGCTGGGGTCTTGATGCAGAAGGGAGCTGAGCACAGCCGGTaGACCTGGCTGGAGTGCTGTGACCCAGGCCCAGTCCACATCCAA +
Preference number: 5 (lower is better)
Translates to: VVAGVLMQKGAEHSR*TWLECCDPGPVHIQ
Trigger: TTGGATGTGGACTGGGCCTGGGTCACAGCACTCCAGCCAGGTGCACCGGCTGTGCTCAGCTCCCTTCTGCATCAAGACCCCAGCAACAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp GCTGGGGTCTTGATGCAGAAGGGAGCTGAGCACAGCCGGTGCACCTaGCTGGAGTGCTGTGACCCAGGCCCAGTCCACATCCAAATTGAA +
Preference number: 5 (lower is better)
Translates to: AGVLMQKGAEHSRCT*LECCDPGPVHIQIE
Trigger: TTCAATTTGGATGTGGACTGGGCCTGGGTCACAGCACTCCAGCCAGGTGCACCGGCTGTGCTCAGCTCCCTTCTGCATCAAGACCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp AGTGCTGTGACCCAGGCCCAGTCCACATCCAAATTGAAGGCTCCCTaGGGCTTCAGGCTGGCCATGCAGAGAAGGGTATGGAAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: SAVTQAQSTSKLKAP*GFRLAMQRRVWKSH
Trigger: GTGGCTCTTCCATACCCTTCTCTGCATGGCCAGCCTGAAGCCCCAGGGAGCCTTCAATTTGGATGTGGACTGGGCCTGGGTCACAGCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CCACTGTCCGGCGTCTCCTGGCTGACTTCTTCTCCTCCCCTGTGCTaGCTCCTTTGCTTCTACAGTAGTCACCAGAGTCCACATGTGCTC +
Preference number: 5 (lower is better)
Translates to: PLSGVSWLTSSPPLC*LLCFYSSHQSPHVL
Trigger: GAGCACATGTGGACTCTGGTGACTACTGTAGAAGCAAAGGAGGCAGCACAGGGGAGGAGAAGAAGTCAGCCAGGAGACGCCGGACAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CCTCCACTGTCCGGCGTCTCCTGGCTGACTTCTTCTCCTCCCCTGTaGTGCCTCCTTTGCTTCTACAGTAGTCACCAGAGTCCACATGTG +
Preference number: 5 (lower is better)
Translates to: PPLSGVSWLTSSPPL*CLLCFYSSHQSPHV
Trigger: CACATGTGGACTCTGGTGACTACTGTAGAAGCAAAGGAGGCAGCACAGGGGAGGAGAAGAAGTCAGCCAGGAGACGCCGGACAGTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp ACAGCTGCCATGGCAAAGCCAAAGCGGCTATTGGTGAGCCCAGGGTaGCCACTCAGTGTGTGTGCCAAGGAGAAGGAAGCATCCTGCTCA +
Preference number: 5 (lower is better)
Translates to: TAAMAKPKRLLVSPG*PLSVCAKEKEASCS
Trigger: TGAGCAGGATGCTTCCTTCTCCTTGGCACACACACTGAGTGGGCACCCTGGGCTCACCAATAGCCGCTTTGGCTTTGCCATGGCAGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp TGTTCACACAGAAAGGACCCTCCGTTCCACTTCCTGAGGCAGCTCTaGCAACCGCTCGAGTCCTCACACTGCAGCCTCTGCCTTTGCTTG +
Preference number: 5 (lower is better)
Translates to: CSHRKDPPFHFLRQL*QPLESSHCSLCLCL
Trigger: CAAGCAAAGGCAGAGGCTGCAGTGTGAGGACTCGAGCGGTTGTCAGAGCTGCCTCAGGAAGTGGAACGGAGGGTCCTTTCTGTGTGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp GTAGCACCGCAAGGGAGTAACCTAGGTAGCTGTACTGTACAGTCCTaGAGTCCTCCTTGGCTGTCTGGTTTAGGAAGCAGCCCCGGCCAT +
Preference number: 5 (lower is better)
Translates to: VAPQGSNLGSCTVQS*SPPWLSGLGSSPGH
Trigger: ATGGCCGGGGCTGCTTCCTAAACCAGACAGCCAAGGAGGACTCCAGGACTGTACAGTACAGCTACCTAGGTTACTCCCTTGCGGTGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CTGATGTTCATGGTCACCTCCTTTGTGACGCCCACCACCAGTTCCTaGTGGGAGATGTTGGTGGTCAGCTGGATCTCAGCGATGCAGAAC +
Preference number: 5 (lower is better)
Translates to: LMFMVTSFVTPTTSS*WEMLVVSWISAMQN
Trigger: GTTCTGCATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGGTGGTGGGCGTCACAAAGGAGGTGACCATGAACATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp GCAGCTTGCTCAGCAGCCCATCCAGAGCTGAGTAGTTGGTCACCTTaGAAGTGTGGGCCTCTTTGGGGTCTGAGGCAATCAGCTTCAGTT +
Preference number: 5 (lower is better)
Translates to: AACSAAHPELSSWSP*KCGPLWGLRQSASV
Trigger: AACTGAAGCTGATTGCCTCAGACCCCAAAGAGGCCCACACTTTCAAGGTGACCAACTACTCAGCTCTGGATGGGCTGCTGAGCAAGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp CCACAGTGCCAAGCAACACCTGCCCCTTGTCCAGGATCTGGGCACTaGAACCAGTCTGTGCGAGTTGATATTGAAGGGCATCTCCAACTG +
Preference number: 5 (lower is better)
Translates to: PQCQATPAPCPGSGH*NQSVRVDIEGHLQL
Trigger: CAGTTGGAGATGCCCTTCAATATCAACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGGACAAGGGGCAGGTGTTGCTTGGCACTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp AATGGCCACATCTGTGAATTTGTCTTGGTTGATATCCCCCACAGCTaGCATGGCAAAGCCAAAGCGGCTATTGGTGAGCCCAGGGTGCCC +
Preference number: 5 (lower is better)
Translates to: NGHICEFVLVDIPHS*HGKAKAAIGEPRVP
Trigger: GGGCACCCTGGGCTCACCAATAGCCGCTTTGGCTTTGCCATGGCAGCTGTGGGGGATATCAACCAAGACAAATTCACAGATGTGGCCATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CCAGTTCCTGCTGGGAGATGTTGGTGGTCAGCTGGATCTCAGCGATaGAGAACACTTTGTTCTTGCAGTCCTTCTCGTAGGGCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: PVPAGRCWWSAGSQR*RTLCSCSPSRRAAG
Trigger: TCCAGCTGCCCTACGAGAAGGACTGCAAGAACAAAGTGTTCTGCATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp AGAACACTTTGTTCTTGCAGTCCTTCTCGTAGGGCAGCTGGAAGATaGCAGAGGGTTCCTTGTAGTGGTCCAGGGTGGGGTTGGGGTAGT +
Preference number: 5 (lower is better)
Translates to: RTLCSCSPSRRAAGR*QRVPCSGPGWGWGS
Trigger: ACTACCCCAACCCCACCCTGGACCACTACAAGGAACCCTCTGCCATCTTCCAGCTGCCCTACGAGAAGGACTGCAAGAACAAAGTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp ATGTTCATGGTCACCTCCTTTGTGACGCCCACCACCAGTTCCTGCTaGGAGATGTTGGTGGTCAGCTGGATCTCAGCGATGCAGAACACT +
Preference number: 5 (lower is better)
Translates to: MFMVTSFVTPTTSSC*EMLVVSWISAMQNT
Trigger: AGTGTTCTGCATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGGTGGTGGGCGTCACAAAGGAGGTGACCATGAACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp TGTGCTGCCTCCTTTGCTTCTACAGTAGTCACCAGAGTCCACATGTaGTCCTGGATCCAGGAACCCTTCGAGGTCAGAGAAGTAGGCTTG +
Preference number: 5 (lower is better)
Translates to: CAASFASTVVTRVHM*SWIQEPFEVREVGL
Trigger: CAAGCCTACTTCTCTGACCTCGAAGGGTTCCTGGATCCAGGAGCACATGTGGACTCTGGTGACTACTGTAGAAGCAAAGGAGGCAGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CCAAAACACCATTGTGGTTCCCGACCAATGTCACTCCCTGGTACCTaGCCTTTGGCATACAGATGTGCTCCACTGGCTGGCAAGCAATTT +
Preference number: 5 (lower is better)
Translates to: PKHHCGSRPMSLPGT*PLAYRCAPLAGKQF
Trigger: AAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGACATTGGTCGGGAACCACAATGGTGTTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp AGGAGAAGGAAGCATCCTGCTCAGGCACCTGGTACACATAGACTCTaGCTTCTTCTCCACGGATGTGGTAAAATGGAGCAGCCACCAGTA +
Preference number: 5 (lower is better)
Translates to: RRRKHPAQAPGTHRL*LLLHGCGKMEQPPV
Trigger: TACTGGTGGCTGCTCCATTTTACCACATCCGTGGAGAAGAAGGCAGAGTCTATGTGTACCAGGTGCCTGAGCAGGATGCTTCCTTCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CATGCTGCACAGGATCGCTTCCACACGCAGGCTCTTGACTCTGGGTaGACTCAGTGTGGTCCTGAGTCTTTGTCAGATTCTTCACTCTTA +
Preference number: 5 (lower is better)
Translates to: HAAQDRFHTQALDSG*TQCGPESLSDSSLL
Trigger: TAAGAGTGAAGAATCTGACAAAGACTCAGGACCACACTGAGTGCACCCAGAGTCAAGAGCCTGCGTGTGGAAGCGATCCTGTGCAGCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp TGTCACTCCCTGGTACCTGCCCTTTGGCATACAGATGTGCTCCACTaGCTGGCAAGCAATTTCATCTGGACTGATGGATATAGCGCATCG +
Preference number: 5 (lower is better)
Translates to: CHSLVPALWHTDVLH*LASNFIWTDGYSAS
Trigger: CGATGCGCTATATCCATCAGTCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTACAGCCCCACGGAGCTaGTGCCTTGGAGCCCCTGCC +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFTAPRS*CLGAPA
Trigger: GGCAGGGGCTCCAAGGCACAAGCTCCGTGGGGCTGT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CCGACCAATGTCACTCCCTGGTACCTGCCCTTTGGCATACAGATGTaGTCCACTGGCTGGCAAGCAATTTCATCTGGACTGATGGATATA +
Preference number: 5 (lower is better)
Translates to: PTNVTPWYLPFGIQM*STGWQAISSGLMDI
Trigger: TATATCCATCAGTCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGACATTGGTCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp TTCTTGAATGCATCACCCACCCCAATGGCAAAGCGCACAACACCCTaGATCTTTGGGGAGTTGATGACAGTCGTAAGATTGAGAGGGTCC +
Preference number: 5 (lower is better)
Translates to: FLNASPTPMAKRTTP*IFGELMTVVRLRGS
Trigger: GGACCCTCTCAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTTGTGCGCTTTGCCATTGGGGTGGGTGATGCATTCAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp CAACACCTGCCCCTTGTCCAGGATCTGGGCACTGAAACCAGTCTGTaGGAGTTGATATTGAAGGGCATCTCCAACTGTACCTTCCATATG +
Preference number: 5 (lower is better)
Translates to: QHLPLVQDLGTETSL*ELILKGISNCTFHM
Trigger: CATATGGAAGGTACAGTTGGAGATGCCCTTCAATATCAACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGGACAAGGGGCAGGTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp ACTCCCTGGTACCTGCCCTTTGGCATACAGATGTGCTCCACTGGCTaGCAAGCAATTTCATCTGGACTGATGGATATAGCGCATCGATAC +
Preference number: 5 (lower is better)
Translates to: TPWYLPFGIQMCSTG*QAISSGLMDIAHRY
Trigger: GTATCGATGCGCTATATCCATCAGTCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp TGCATCACCCACCCCAATGGCAAAGCGCACAACACCCTGCATCTTTaGGGAGTTGATGACAGTCGTAAGATTGAGAGGGTCCCCAAATAT +
Preference number: 5 (lower is better)
Translates to: CITHPNGKAHNTLHL*GVDDSRKIERVPKY
Trigger: ATATTTGGGGACCCTCTCAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTTGTGCGCTTTGCCATTGGGGTGGGTGATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp GGTCTGAGGCAATCAGCTTCAGTTCTCTGTAAGTGTTGTTATTCTTaGATGCATCACCCACCCCAATGGCAAAGCGCACAACACCCTGCA +
Preference number: 5 (lower is better)
Translates to: GLRQSASVLCKCCYS*MHHPPQWQSAQHPA
Trigger: TGCAGGGTGTTGTGCGCTTTGCCATTGGGGTGGGTGATGCATTCAAGAATAACAACACTTACAGAGAACTGAAGCTGATTGCCTCAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp TGCCAAGTTACTGAGACATTCACAGATGATCTCTTGAGTATGGGGTaGCCAATCTTGCAGTTCATGACCAGGACAGAAGCAACTGGCTTG +
Preference number: 5 (lower is better)
Translates to: CQVTETFTDDLLSMG*PILQFMTRTEATGL
Trigger: CAAGCCAGTTGCTTCTGTCCTGGTCATGAACTGCAAGATTGGTCACCCCATACTCAAGAGATCATCTGTGAATGTCTCAGTAACTTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp ATCACTGAGGGTCTGGAAAGAACTGCAATGAAGGCATGTCTGAATTaGAGGCTGCGTGTCTCTCTGGCCAAAGACTTCTCATTGGAATTG +
Preference number: 5 (lower is better)
Translates to: ITEGLERTAMKACLN*RLRVSLAKDFSLEL
Trigger: CAATTCCAATGAGAAGTCTTTGGCCAGAGAGACACGCAGCCTTCAATTCAGACATGCCTTCATTGCAGTTCTTTCCAGACCCTCAGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGTTGTTGCTGGGGTCTaGATGCAGAAGGGAGCTGAG +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFVVAGV*MQKGAE
Trigger: CTCAGCTCCCTTCTGCATCAAGACCCCAGCAACAAC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTCCTGGTACCTGCCCTTaGGCATACAGATGTGCTCCA +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFPGTCP*AYRCAP
Trigger: TGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGG...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCCCGTGAGCTCTGAGTaGAGGCTGCGGAACTTCCGG +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNPVSSE*RLRNFR
Trigger: CCGGAAGTTCCGCAGCCTCAACTCAGAGCTCACGGG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAGCCTCTGCCTTTGCTaGGTCACATCCACATCCACC +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSLCLC*VTSTST
Trigger: GGTGGATGTGGATGTGACCAAGCAAAGGCAGAGGCT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTCCTGCTGGGAGATGTaGGTGGTCAGCTGGATCTCA +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFSCWEM*VVSWIS
Trigger: TGAGATCCAGCTGACCACCAACATCTCCCAGCAGGA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp TCCCCATGCACATTGAAGAAGAATTCTTTGTGGTCAGAAGGGCTTTaGCTTGTGTTCATGTACATCACTGAGGGTCTGGAAAGAACTGCA +
Preference number: 5 (lower is better)
Translates to: SPCTLKKNSLWSEGL*LVFMYITEGLERTA
Trigger: TGCAGTTCTTTCCAGACCCTCAGTGATGTACATGAACACAAGCCAAAGCCCTTCTGACCACAAAGAATTCTTCTTCAATGTGCATGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATGTGTTGTTGCAGCTaGCTCAGCAGCCCATCCAGA +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFMCCCS*LSSPSR
Trigger: TCTGGATGGGCTGCTGAGCAAGCTGCAACAACACAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATGAACGATGTGTTGTaGCAGCTTGCTCAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFMNDVL*QLAQQP
Trigger: GGGCTGCTGAGCAAGCTGCAACAACACATCGTTCAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAGCAACACCTGCCCCTaGTCCAGGATCTGGGCACTG +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSNTCP*SRIWAL
Trigger: CAGTGCCCAGATCCTGGACAAGGGGCAGGTGTTGCT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAAGCCAAAGCGGCTATaGGTGAGCCCAGGGTGCCCA +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNKPKRL*VSPGCP
Trigger: TGGGCACCCTGGGCTCACCAATAGCCGCTTTGGCTT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 90 bp ACAGTGATATCTGCTGTCCTATTTGGAAAGACACTCTCCTCTAGCTaGCAAGTTACTGAGACATTCACAGATGATCTCTTGAGTATGGGG +
Preference number: 5 (lower is better)
Translates to: TVISAVLFGKTLSSS*QVTETFTDDLLSMG
Trigger: CCCCATACTCAAGAGATCATCTGTGAATGTCTCAGTAACTTGGCAGCTAGAGGAGAGTGTCTTTCCAAATAGGACAGCAGATATCACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 90 bp GCTCCAAAAAGATTCTCCCCATGCACATTGAAGAAGAATTCTTTGTaGTCAGAAGGGCTTTGGCTTGTGTTCATGTACATCACTGAGGGT +
Preference number: 5 (lower is better)
Translates to: APKRFSPCTLKKNSL*SEGLWLVFMYITEG
Trigger: ACCCTCAGTGATGTACATGAACACAAGCCAAAGCCCTTCTGACCACAAAGAATTCTTCTTCAATGTGCATGGGGAGAATCTTTTTGGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGCGATGCAGAACACTTaGTTCTTGCAGTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFAMQNT*FLQSFS
Trigger: CGAGAAGGACTGCAAGAACAAAGTGTTCTGCATCGC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp AAAGTTGAGGAACATCTCTCTAAGGCCTGGCTCAGAAGCTACGCCTaGAGAGTCAACTTCAAAACACAGTTTTACATCCATCTTGCCTAT +
Preference number: 5 (lower is better)
Translates to: KVEEHLSKAWLRSYA*RVNFKTQFYIHLAY
Trigger: ATAGGCAAGATGGATGTAAAACTGTGTTTTGAAGTTGACTCTTCAGGCGTAGCTTCTGAGCCAGGCCTTAGAGAGATGTTCCTCAACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCAGTCCACATCCAAATaGAAGGCTCCCTGGGGCTTC +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNQSTSK*KAPWGF
Trigger: GAAGCCCCAGGGAGCCTTCAATTTGGATGTGGACTG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTCCCGGCTCTCTaGAAGATCAAACTCAGTCTG +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFNVPAL*KIKLSL
Trigger: CAGACTGAGTTTGATCTTCAAGAGAGCCGGGACATT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTCCTGGAGTCCTCCTaGGCTGTCTGGTTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNVLESS*AVWFRK
Trigger: CTTCCTAAACCAGACAGCCAAGGAGGACTCCAGGAC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATCTGCAGCCTCTGCCTTaGCTTGGTCACATCCACATC +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNLQPLP*LGHIHI
Trigger: GATGTGGATGTGACCAAGCAAAGGCAGAGGCTGCAG...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTCAGAGAAGTAGGCTaGGGCCTGGAGGTCCAAATT +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNVREVG*GLEVQI
Trigger: AATTTGGACCTCCAGGCCCAAGCCTACTTCTCTGAC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTATCTGTGAATTTGTCTaGGTTGATATCCCCCACAGC +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFICEFV*VDIPHS
Trigger: GCTGTGGGGGATATCAACCAAGACAAATTCACAGAT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTACATCCACCGTAAAGTaGAGGAACATCTCTCTAAGG +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFTSTVK*RNISLR
Trigger: CCTTAGAGAGATGTTCCTCAACTTTACGGTGGATGT...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGCCAAAGACTTCTCATaGGAATTGGAGATGGTCACA +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFAKDFS*ELEMVT
Trigger: TGTGACCATCTCCAATTCCAATGAGAAGTCTTTGGC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTGAATTTGTCTTGGTaGATATCCCCCACAGCTGCC +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNVNLSW*ISPTAA
Trigger: GGCAGCTGTGGGGGATATCAACCAAGACAAATTCAC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATACCTTGATGGTGATGTaGGAGAAGCAGTCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNTLMVM*EKQSSS
Trigger: TGAGGAGGACTGCTTCTCCAACATCACCATCAAGGT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTGACTTCTCATTGGAATaGGAGATGGTCACAGTGATA +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFDFSLE*EMVTVI
Trigger: TATCACTGTGACCATCTCCAATTCCAATGAGAAGTC...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGAAGGCATGTCTGAATaGAAGGCTGCGTGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNEGMSE*KAACLS
Trigger: AGAGAGACACGCAGCCTTCAATTCAGACATGCCTTC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTGTGGTCCTGAGTCTTaGTCAGATTCTTCACTCTTA +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFCGPES*SDSSLL
Trigger: TAAGAGTGAAGAATCTGACAAAGACTCAGGACCACA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTGCACCAGGGCAAAGTaGCACTCAAAACACTTCTCA +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNCTRAK*HSKHFS
Trigger: TGAGAAGTGTTTTGAGTGCAACTTTGCCCTGGTGCA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTGGTCAGAAGGGCTTaGGCTTGTGTTCATGTACAT +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNVVRRA*ACVHVH
Trigger: ATGTACATGAACACAAGCCAAAGCCCTTCTGACCAC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATAGTTTTACATCCATCTaGCCTATGAAGACCATGGGC +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNSFTSI*PMKTMG
Trigger: GCCCATGGTCTTCATAGGCAAGATGGATGTAAAACT...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp GGCAAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTTGGAAATCTTGTAATTaGATGGGGACACAAATTTGC +
Preference number: 5 (lower is better)
Translates to: GKLGTVLIKGTAVKVNVFWKSCN*MGTQIC
Trigger: GCAAATTTGTGTCCCCATCAAATTACAAGATTTCCA...AAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATGTAGAGATGAAATTTTaGGCCTTCTGGAAGTCTGAG +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNVEMKF*AFWKSE
Trigger: CTCAGACTTCCAGAAGGCCAAAAATTTCATCTCTAC...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTTGAAGAAGAATTCTTaGTGGTCAGAAGGGCTTTGG +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNLKKNS*WSEGLW
Trigger: CCAAAGCCCTTCTGACCACAAAGAATTCTTCTTCAA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS-3UTR CAA 90 bp AAACTGGGAACCGTGCTCATTAAAGGCACTGCTGTAAAAGTAAATGTATTTAATTTCTCCCCATGCACATaGAAGAAGAATTCTTTGTGG +
Preference number: 5 (lower is better)
Translates to: KLGTVLIKGTAVKVNVFNFSPCT*KKNSLW
Trigger: CCACAAAGAATTCTTCTTCAATGTGCATGGGGAGAA...ATTAAATACATTTACTTTTACAGCAGTGCCTTTAATGAGCACGGTTCCCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 90 bp TCTTTGTCAGATTCTTCACTCTTACAATCTGGAAATCTTGTAATTTaGTGGGGACACAAATTTGCAACTGGAATACAGCTCCAAAAAGAT +
Preference number: 5 (lower is better)
Translates to: SLSDSSLLQSGNLVI*WGHKFATGIQLQKD
Trigger: ATCTTTTTGGAGCTGTATTCCAGTTGCAAATTTGTGTCCCCATCAAATTACAAGATTTCCAGATTGTAAGAGTGAAGAATCTGACAAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp GCTGCGTCTGGCTACCAGGAGGCAGGTCTGGTTGTTGCTGGGGTCTaGATGCAGAAGGGAGCTGAGCACAGCCGGTGCACCTGGCTGGAG +
Preference number: 6 (lower is better)
Translates to: AASGYQEAGLVVAGV*MQKGAEHSRCTWLE
Trigger: CTCCAGCCAGGTGCACCGGCTGTGCTCAGCTCCCTTCTGCATCAAGACCCCAGCAACAACCAGACCTGCCTCCTGGTAGCCAGACGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp GGCTACCAGGAGGCAGGTCTGGTTGTTGCTGGGGTCTaGATGCAGAAGGGAGCTGAGCACAGCCGGTGCACC +
Preference number: 6 (lower is better)
Translates to: GYQEAGLVVAGV*MQKGAEHSRCT
Trigger: GGTGCACCGGCTGTGCTCAGCTCCCTTCTGCATCAAGACCCCAGCAACAACCAGACCTGCCTCCTGGTAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp GCACCTGGCTGGAGTGCTGTGACCCAGGCCCAGTCCACATCCAAATaGAAGGCTCCCTGGGGCTTCAGGCTGGCCATGCAGAGAAGGGTA +
Preference number: 6 (lower is better)
Translates to: APGWSAVTQAQSTSK*KAPWGFRLAMQRRV
Trigger: TACCCTTCTCTGCATGGCCAGCCTGAAGCCCCAGGGAGCCTTCAATTTGGATGTGGACTGGGCCTGGGTCACAGCACTCCAGCCAGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp AGAAAGGACCCTCCGTTCCACTTCCTGAGGCAGCTCTaGCAACCGCTCGAGTCCTCACACTGCAGCCTCTGC +
Preference number: 6 (lower is better)
Translates to: RKDPPFHFLRQL*QPLESSHCSLC
Trigger: GCAGAGGCTGCAGTGTGAGGACTCGAGCGGTTGTCAGAGCTGCCTCAGGAAGTGGAACGGAGGGTCCTTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp ACCCAGGCCCAGTCCACATCCAAATTGAAGGCTCCCTaGGGCTTCAGGCTGGCCATGCAGAGAAGGGTATGG +
Preference number: 6 (lower is better)
Translates to: TQAQSTSKLKAP*GFRLAMQRRVW
Trigger: CCATACCCTTCTCTGCATGGCCAGCCTGAAGCCCCAGGGAGCCTTCAATTTGGATGTGGACTGGGCCTGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp ATGGTCACCTCCTTTGTGACGCCCACCACCAGTTCCTaGTGGGAGATGTTGGTGGTCAGCTGGATCTCAGCG +
Preference number: 6 (lower is better)
Translates to: MVTSFVTPTTSS*WEMLVVSWISA
Trigger: CGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGGTGGTGGGCGTCACAAAGGAGGTGACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp GTCACCTCCTTTGTGACGCCCACCACCAGTTCCTGCTaGGAGATGTTGGTGGTCAGCTGGATCTCAGCGATG +
Preference number: 6 (lower is better)
Translates to: VTSFVTPTTSSC*EMLVVSWISAM
Trigger: CATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGGTGGTGGGCGTCACAAAGGAGGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp TTAAAGGCCCCCACAGTGCCAAGCAACACCTGCCCCTaGTCCAGGATCTGGGCACTGAAACCAGTCTGTGCG +
Preference number: 6 (lower is better)
Translates to: LKAPTVPSNTCP*SRIWALKPVCA
Trigger: CGCACAGACTGGTTTCAGTGCCCAGATCCTGGACAAGGGGCAGGTGTTGCTTGGCACTGTGGGGGCCTTTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp CTGTACTGTACAGTCCTGGAGTCCTCCTTGGCTGTCTaGTTTAGGAAGCAGCCCCGGCCATTCTGTGTGCTG +
Preference number: 6 (lower is better)
Translates to: LYCTVLESSLAV*FRKQPRPFCVL
Trigger: CAGCACACAGAATGGCCGGGGCTGCTTCCTAAACCAGACAGCCAAGGAGGACTCCAGGACTGTACAGTACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp TGTTCTTGCAGTCCTTCTCGTAGGGCAGCTGGAAGATaGCAGAGGGTTCCTTGTAGTGGTCCAGGGTGGGGT +
Preference number: 6 (lower is better)
Translates to: CSCSPSRRAAGR*QRVPCSGPGWG
Trigger: ACCCCACCCTGGACCACTACAAGGAACCCTCTGCCATCTTCCAGCTGCCCTACGAGAAGGACTGCAAGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp GGTTCCCGACCAATGTCACTCCCTGGTACCTGCCCTTaGGCATACAGATGTGCTCCACTGGCTGGCAAGCAA +
Preference number: 6 (lower is better)
Translates to: GSRPMSLPGTCP*AYRCAPLAGKQ
Trigger: TTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGACATTGGTCGGGAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp CAACCGCTCGAGTCCTCACACTGCAGCCTCTGCCTTTaGTTGGTCACATCCACATCCACCGTAAAGTTGAGG +
Preference number: 6 (lower is better)
Translates to: QPLESSHCSLCL*LVTSTSTVKLR
Trigger: CCTCAACTTTACGGTGGATGTGGATGTGACCAAGCAAAGGCAGAGGCTGCAGTGTGAGGACTCGAGCGGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp CTAGGTAGCTGTACTGTACAGTCCTGGAGTCCTCCTTaGCTGTCTGGTTTAGGAAGCAGCCCCGGCCATTCT +
Preference number: 6 (lower is better)
Translates to: LGSCTVQSWSPP*LSGLGSSPGHS
Trigger: AGAATGGCCGGGGCTGCTTCCTAAACCAGACAGCCAAGGAGGACTCCAGGACTGTACAGTACAGCTACCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp CCGCTCGAGTCCTCACACTGCAGCCTCTGCCTTTGCTaGGTCACATCCACATCCACCGTAAAGTTGAGGAAC +
Preference number: 6 (lower is better)
Translates to: PLESSHCSLCLC*VTSTSTVKLRN
Trigger: GTTCCTCAACTTTACGGTGGATGTGGATGTGACCAAGCAAAGGCAGAGGCTGCAGTGTGAGGACTCGAGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp GTCACCTCCTTTGTGACGCCCACCACCAGTTCCTGCTGGGAGATGTaGGTGGTCAGCTGGATCTCAGCGATGCAGAACACTTTGTTCTTG +
Preference number: 6 (lower is better)
Translates to: VTSFVTPTTSSCWEM*VVSWISAMQNTLFL
Trigger: CAAGAACAAAGTGTTCTGCATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGGTGGTGGGCGTCACAAAGGAGGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp TCAGCAGCCCATCCAGAGCTGAGTAGTTGGTCACCTTaGAAGTGTGGGCCTCTTTGGGGTCTGAGGCAATCA +
Preference number: 6 (lower is better)
Translates to: SAAHPELSSWSP*KCGPLWGLRQS
Trigger: TGATTGCCTCAGACCCCAAAGAGGCCCACACTTTCAAGGTGACCAACTACTCAGCTCTGGATGGGCTGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp GTCACTCCCTGGTACCTGCCCTTTGGCATACAGATGTaGTCCACTGGCTGGCAAGCAATTTCATCTGGACTG +
Preference number: 6 (lower is better)
Translates to: VTPWYLPFGIQM*STGWQAISSGL
Trigger: CAGTCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp CAGGATCGCTTCCACACGCAGGCTCTTGACTCTGGGTaGACTCAGTGTGGTCCTGAGTCTTTGTCAGATTCT +
Preference number: 6 (lower is better)
Translates to: QDRFHTQALDSG*TQCGPESLSDS
Trigger: AGAATCTGACAAAGACTCAGGACCACACTGAGTGCACCCAGAGTCAAGAGCCTGCGTGTGGAAGCGATCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp CCAAGGATCGGCAGTTCAGATACATCTCTTAGTAACTaGTTAGTGTGGCCCACGGAGATCTCTGCGGCCACG +
Preference number: 6 (lower is better)
Translates to: PRIGSSDTSLSN*LVWPTEISAAT
Trigger: CGTGGCCGCAGAGATCTCCGTGGGCCACACTAAGCAGTTACTAAGAGATGTATCTGAACTGCCGATCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp CGAGAGCCAACTGTGATATCGGCAAGGCCATCGCCATaGAAATCTAACCCACCGGACACAGACATGCCGAAG +
Preference number: 6 (lower is better)
Translates to: REPTVISARPSP*KSNPPDTDMPK
Trigger: CTTCGGCATGTCTGTGTCCGGTGGGTTAGATTTCAATGGCGATGGCCTTGCCGATATCACAGTTGGCTCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp CACCATTGTGGTTCCCGACCAATGTCACTCCCTGGTACCTGCCCTTaGGCATACAGATGTGCTCCACTGGCTGGCAAGCAATTTCATCTG +
Preference number: 6 (lower is better)
Translates to: HHCGSRPMSLPGTCP*AYRCAPLAGKQFHL
Trigger: CAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGACATTGGTCGGGAACCACAATGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp GATGCTCTGAACTTTGGCAAGGGAGGCGTTAATGTCCCGGCTCTCTaGAAGATCAAACTCAGTCTGGATCACGGCCCCATACTGCACCAG +
Preference number: 6 (lower is better)
Translates to: DALNFGKGGVNVPAL*KIKLSLDHGPILHQ
Trigger: CTGGTGCAGTATGGGGCCGTGATCCAGACTGAGTTTGATCTTCAAGAGAGCCGGGACATTAACGCCTCCCTTGCCAAAGTTCAGAGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp ACTTTGGCAAGGGAGGCGTTAATGTCCCGGCTCTCTTaGAGATCAAACTCAGTCTGGATCACGGCCCCATAC +
Preference number: 6 (lower is better)
Translates to: TLAREALMSRLS*RSNSVWITAPY
Trigger: GTATGGGGCCGTGATCCAGACTGAGTTTGATCTTCAAGAGAGCCGGGACATTAACGCCTCCCTTGCCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp GTGTTGTTGCAGCTTGCTCAGCAGCCCATCCAGAGCTaGGTAGTTGGTCACCTTGAAAGTGTGGGCCTCTTT +
Preference number: 6 (lower is better)
Translates to: VLLQLAQQPIQS*VVGHLESVGLF
Trigger: AAAGAGGCCCACACTTTCAAGGTGACCAACTACTCAGCTCTGGATGGGCTGCTGAGCAAGCTGCAACAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp AGAAGCAGTCCTCCTCACAAAGCTCCTCTGTGGAGATaGGCCAGAAGTGTTCACACAGAAAGGACCCTCCGT +
Preference number: 6 (lower is better)
Translates to: RSSPPHKAPLWR*ARSVHTERTLR
Trigger: ACGGAGGGTCCTTTCTGTGTGAACACTTCTGGCTCATCTCCACAGAGGAGCTTTGTGAGGAGGACTGCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp GCATCACCCACCCCAATGGCAAAGCGCACAACACCCTaGATCTTTGGGGAGTTGATGACAGTCGTAAGATTG +
Preference number: 6 (lower is better)
Translates to: ASPTPMAKRTTP*IFGELMTVVRL
Trigger: CAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTTGTGCGCTTTGCCATTGGGGTGGGTGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp CCCCTTGTCCAGGATCTGGGCACTGAAACCAGTCTGTaGGAGTTGATATTGAAGGGCATCTCCAACTGTACC +
Preference number: 6 (lower is better)
Translates to: PLVQDLGTETSL*ELILKGISNCT
Trigger: GGTACAGTTGGAGATGCCCTTCAATATCAACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGGACAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp GCTGGGAGATGTTGGTGGTCAGCTGGATCTCAGCGATaGAGAACACTTTGTTCTTGCAGTCCTTCTCGTAGG +
Preference number: 6 (lower is better)
Translates to: AGRCWWSAGSQR*RTLCSCSPSRR
Trigger: CCTACGAGAAGGACTGCAAGAACAAAGTGTTCTGCATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp CACCCCAATGGCAAAGCGCACAACACCCTGCATCTTTaGGGAGTTGATGACAGTCGTAAGATTGAGAGGGTC +
Preference number: 6 (lower is better)
Translates to: HPNGKAHNTLHL*GVDDSRKIERV
Trigger: GACCCTCTCAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTTGTGCGCTTTGCCATTGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp CAAGGGAGTAACCTAGGTAGCTGTACTGTACAGTCCTaGAGTCCTCCTTGGCTGTCTGGTTTAGGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: QGSNLGSCTVQS*SPPWLSGLGSS
Trigger: GCTGCTTCCTAAACCAGACAGCCAAGGAGGACTCCAGGACTGTACAGTACAGCTACCTAGGTTACTCCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp ACCACCAGTTCCTGCTGGGAGATGTTGGTGGTCAGCTaGATCTCAGCGATGCAGAACACTTTGTTCTTGCAG +
Preference number: 6 (lower is better)
Translates to: TTSSCWEMLVVS*ISAMQNTLFLQ
Trigger: CTGCAAGAACAAAGTGTTCTGCATCGCTGAGATCCAGCTGACCACCAACATCTCCCAGCAGGAACTGGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp TCCTTTGCTTCTACAGTAGTCACCAGAGTCCACATGTaGTCCTGGATCCAGGAACCCTTCGAGGTCAGAGAA +
Preference number: 6 (lower is better)
Translates to: SFASTVVTRVHM*SWIQEPFEVRE
Trigger: TTCTCTGACCTCGAAGGGTTCCTGGATCCAGGAGCACATGTGGACTCTGGTGACTACTGTAGAAGCAAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp GAGCCACGGCTTGGAATGAAGATATTGTCTAGGACATaGTGCATGGCTGAGGCGGTCTTAGTGACTTCCTTC +
Preference number: 6 (lower is better)
Translates to: EPRLGMKILSRT*CMAEAVLVTSF
Trigger: GAAGGAAGTCACTAAGACCGCCTCAGCCATGCAGCATGTCCTAGACAATATCTTCATTCCAAGCCGTGGCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp AAGCATCCTGCTCAGGCACCTGGTACACATAGACTCTaGCTTCTTCTCCACGGATGTGGTAAAATGGAGCAG +
Preference number: 6 (lower is better)
Translates to: KHPAQAPGTHRL*LLLHGCGKMEQ
Trigger: CTGCTCCATTTTACCACATCCGTGGAGAAGAAGGCAGAGTCTATGTGTACCAGGTGCCTGAGCAGGATGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp AAAACACCATTGTGGTTCCCGACCAATGTCACTCCCTaGTACCTGCCCTTTGGCATACAGATGTGCTCCACT +
Preference number: 6 (lower is better)
Translates to: KTPLWFPTNVTP*YLPFGIQMCST
Trigger: AGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAGGGAGTGACATTGGTCGGGAACCACAATGGTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp AACTTTGGCAAGGGAGGCGTTAATGTCCCGGCTCTCTaGAAGATCAAACTCAGTCTGGATCACGGCCCCATA +
Preference number: 6 (lower is better)
Translates to: NFGKGGVNVPAL*KIKLSLDHGPI
Trigger: TATGGGGCCGTGATCCAGACTGAGTTTGATCTTCAAGAGAGCCGGGACATTAACGCCTCCCTTGCCAAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp CTGCCCCTTGTCCAGGATCTGGGCACTGAAACCAGTCTGTGCGAGTaGATATTGAAGGGCATCTCCAACTGTACCTTCCATATGAACGAT +
Preference number: 6 (lower is better)
Translates to: LPLVQDLGTETSLCE*ILKGISNCTFHMND
Trigger: ATCGTTCATATGGAAGGTACAGTTGGAGATGCCCTTCAATATCAACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGGACAAGGGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp TACCTGCCCTTTGGCATACAGATGTGCTCCACTGGCTaGCAAGCAATTTCATCTGGACTGATGGATATAGCG +
Preference number: 6 (lower is better)
Translates to: YLPFGIQMCSTG*QAISSGLMDIA
Trigger: CGCTATATCCATCAGTCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp CTGGTACCTGCCCTTTGGCATACAGATGTGCTCCACTaGCTGGCAAGCAATTTCATCTGGACTGATGGATAT +
Preference number: 6 (lower is better)
Translates to: LVPALWHTDVLH*LASNFIWTDGY
Trigger: ATATCCATCAGTCCAGATGAAATTGCTTGCCAGCCAGTGGAGCACATCTGTATGCCAAAGGGCAGGTACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp GGCAGTTCAGATACATCTCTTAGTAACTGCTTAGTGTaGCCCACGGAGATCTCTGCGGCCACGGTTACATTT +
Preference number: 6 (lower is better)
Translates to: GSSDTSLSNCLV*PTEISAATVTF
Trigger: AAATGTAACCGTGGCCGCAGAGATCTCCGTGGGCCACACTAAGCAGTTACTAAGAGATGTATCTGAACTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp ATGGCAAAGCGCACAACACCCTGCATCTTTGGGGAGTaGATGACAGTCGTAAGATTGAGAGGGTCCCCAAAT +
Preference number: 6 (lower is better)
Translates to: MAKRTTPCIFGE*MTVVRLRGSPN
Trigger: ATTTGGGGACCCTCTCAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTTGTGCGCTTTGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp GTCCAGGATCTGGGCACTGAAACCAGTCTGTGCGAGTaGATATTGAAGGGCATCTCCAACTGTACCTTCCAT +
Preference number: 6 (lower is better)
Translates to: VQDLGTETSLCE*ILKGISNCTFH
Trigger: ATGGAAGGTACAGTTGGAGATGCCCTTCAATATCAACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp CGCACAACACCCTGCATCTTTGGGGAGTTGATGACAGTCGTAAGATaGAGAGGGTCCCCAAATATGTCACCATCAGTAAGTACCACCATG +
Preference number: 6 (lower is better)
Translates to: RTTPCIFGELMTVVR*RGSPNMSPSVSTTM
Trigger: CATGGTGGTACTTACTGATGGTGACATATTTGGGGACCCTCTCAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGGTGTTGTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp GGTCTGGAAAGAACTGCAATGAAGGCATGTCTGAATTaGAGGCTGCGTGTCTCTCTGGCCAAAGACTTCTCA +
Preference number: 6 (lower is better)
Translates to: GLERTAMKACLN*RLRVSLAKDFS
Trigger: TGAGAAGTCTTTGGCCAGAGAGACACGCAGCCTTCAATTCAGACATGCCTTCATTGCAGTTCTTTCCAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp CTTGTCCAGGATCTGGGCACTGAAACCAGTCTGTGCGAGTTGATATaGAAGGGCATCTCCAACTGTACCTTCCATATGAACGATGTGTTG +
Preference number: 6 (lower is better)
Translates to: LVQDLGTETSLCELI*KGISNCTFHMNDVL
Trigger: CAACACATCGTTCATATGGAAGGTACAGTTGGAGATGCCCTTCAATATCAACTCGCACAGACTGGTTTCAGTGCCCAGATCCTGGACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp GTCAGAAGGGCTTTGGCTTGTGTTCATGTACATCACTaGGGGTCTGGAAAGAACTGCAATGAAGGCATGTCT +
Preference number: 6 (lower is better)
Translates to: VRRALACVHVHH*GSGKNCNEGMS
Trigger: AGACATGCCTTCATTGCAGTTCTTTCCAGACCCTCAGTGATGTACATGAACACAAGCCAAAGCCCTTCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp CAGCTTCAGTTCTCTGTAAGTGTTGTTATTCTTGAATaGATCACCCACCCCAATGGCAAAGCGCACAACACC +
Preference number: 6 (lower is better)
Translates to: QLQFSVSVVILE*ITHPNGKAHNT
Trigger: GGTGTTGTGCGCTTTGCCATTGGGGTGGGTGATGCATTCAAGAATAACAACACTTACAGAGAACTGAAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp CCCTGCATCTTTGGGGAGTTGATGACAGTCGTAAGATaGAGAGGGTCCCCAAATATGTCACCATCAGTAAGT +
Preference number: 6 (lower is better)
Translates to: PCIFGELMTVVR*RGSPNMSPSVS
Trigger: ACTTACTGATGGTGACATATTTGGGGACCCTCTCAATCTTACGACTGTCATCAACTCCCCAAAGATGCAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp ACCAGGACAGAAGCAACTGGCTTGGGGTCATCACACTaGACATCTGGAGATACTGGCTTTTGTATCTTCTTA +
Preference number: 6 (lower is better)
Translates to: TRTEATGLGSSH*TSGDTGFCIFL
Trigger: TAAGAAGATACAAAAGCCAGTATCTCCAGATGTTCAGTGTGATGACCCCAAGCCAGTTGCTTCTGTCCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CCA 72 bp TTCCTCATCATGGTAGAGATGAAATTTTTGGCCTTCTaGAAGTCTGAGGGTTCAATGCTTCCTGAGCCATCC +
Preference number: 6 (lower is better)
Translates to: FLIMVEMKFLAF*KSEGSMLPEPS
Trigger: GGATGGCTCAGGAAGCATTGAACCCTCAGACTTCCAGAAGGCCAAAAATTTCATCTCTACCATGATGAGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp CAATCAGCTTCAGTTCTCTGTAAGTGTTGTTATTCTTaGATGCATCACCCACCCCAATGGCAAAGCGCACAA +
Preference number: 6 (lower is better)
Translates to: QSASVLCKCCYS*MHHPPQWQSAQ
Trigger: TTGTGCGCTTTGCCATTGGGGTGGGTGATGCATTCAAGAATAACAACACTTACAGAGAACTGAAGCTGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp GAACATCTCTCTAAGGCCTGGCTCAGAAGCTACGCCTaGAGAGTCAACTTCAAAACACAGTTTTACATCCAT +
Preference number: 6 (lower is better)
Translates to: EHLSKAWLRSYA*RVNFKTQFYIH
Trigger: ATGGATGTAAAACTGTGTTTTGAAGTTGACTCTTCAGGCGTAGCTTCTGAGCCAGGCCTTAGAGAGATGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp TCTGCTGTCCTATTTGGAAAGACACTCTCCTCTAGCTaGCAAGTTACTGAGACATTCACAGATGATCTCTTG +
Preference number: 6 (lower is better)
Translates to: SAVLFGKTLSSS*QVTETFTDDLL
Trigger: CAAGAGATCATCTGTGAATGTCTCAGTAACTTGGCAGCTAGAGGAGAGTGTCTTTCCAAATAGGACAGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS GCA 72 bp TTTTCTTTATTAGATGTGATAGCACAGACCACTGAATaGCATTCTTTTACATGCTGCACAGGATCGCTTCCA +
Preference number: 6 (lower is better)
Translates to: FSLLDVIAQTTE*HSFTCCTGSLP
Trigger: TGGAAGCGATCCTGTGCAGCATGTAAAAGAATGGCATTCAGTGGTCTGTGCTATCACATCTAATAAAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS TCA 72 bp GATTCTTCACTCTTACAATCTGGAAATCTTGTAATTTaGTGGGGACACAAATTTGCAACTGGAATACAGCTC +
Preference number: 6 (lower is better)
Translates to: DSSLLQSGNLVI*WGHKFATGIQL
Trigger: GAGCTGTATTCCAGTTGCAAATTTGTGTCCCCATCAAATTACAAGATTTCCAGATTGTAAGAGTGAAGAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 90 bp GTCTTTGTCAGATTCTTCACTCTTACAATCTGGAAATCTTGTAATTaGATGGGGACACAAATTTGCAACTGGAATACAGCTCCAAAAAGA +
Preference number: 6 (lower is better)
Translates to: VFVRFFTLTIWKSCN*MGTQICNWNTAPKR
Trigger: TCTTTTTGGAGCTGTATTCCAGTTGCAAATTTGTGTCCCCATCAAATTACAAGATTTCCAGATTGTAAGAGTGAAGAATCTGACAAAGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4
CDS CAA 72 bp AGATTCTTCACTCTTACAATCTGGAAATCTTGTAATTaGATGGGGACACAAATTTGCAACTGGAATACAGCT +
Preference number: 6 (lower is better)
Translates to: RFFTLTIWKSCN*MGTQICNWNTA
Trigger: AGCTGTATTCCAGTTGCAAATTTGTGTCCCCATCAAATTACAAGATTTCCAGATTGTAAGAGTGAAGAATCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006101.4