RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ITGA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001507

Ensembl transcript IDs: ENSMUST00000001548.14, ENSMUST00000107739.8, ENSMUST00000120375.8, ENSMUST00000145671.2

Found 442 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCTaGGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACC +
Preference number: 1 (lower is better)
Translates to: HTPRGLVGISRPCPG*GGQDGSEVSPLHPT
Trigger: GGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR GCA 90 bp CGTGCTCCCTGGAGGTGGGTAGCGGTCCTCCTCCCGGATACGCACTaGATGGTACTTGGGCATAATCCGGTAGTAGCGGGTCGGCTTAAA +
Preference number: 1 (lower is better)
Translates to: RAPWRWVAVLLPDTH*MVLGHNPVVAGRLK
Trigger: TTTAAGCCGACCCGCTACTACCGGATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAGGAGGACCGCTACCCACCTCCAGGGAGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR TCA 90 bp TCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTaGAGGATGCCGCCATGCTCCAGGTCAGTCCCAGCACAGTGTGTG +
Preference number: 1 (lower is better)
Translates to: SSSSYQCLLRQDPAL*RMPPCSRSVPAQCV
Trigger: CACACACTGTGCTGGGACTGACCTGGAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp TCCCCTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTaGGGATCTCCAGGCCTTGCCCAGGCTGAGGTGGTCAGGATGGAT +
Preference number: 1 (lower is better)
Translates to: SPAMLHSSITPHVVS*GSPGLAQAEVVRMD
Trigger: ATCCATCCTGACCACCTCAGCCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR GCA 90 bp CCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTaGTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCAGGGCCC +
Preference number: 1 (lower is better)
Translates to: PLAVGPVCVSTVQGL*WAQHCKVLKEIPGP
Trigger: GGGCCCTGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp AACATCCCCTGGGTAGCCTTTAGTGTAGCCCTGCGCTCCAGTGCCTaGCAGGAATTGCAGCTGAGCCTGACTGTCTCCTCCGCATCAGTA +
Preference number: 1 (lower is better)
Translates to: NIPWVAFSVALRSSA*QELQLSLTVSSASV
Trigger: TACTGATGCGGAGGAGACAGTCAGGCTCAGCTGCAATTCCTGCCAGGCACTGGAGCGCAGGGCTACACTAAAGGCTACCCAGGGGATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp TCTCGTGGGGATCTCCAGGCCTTGCCCAGGCTGAGGTGGTCAGGATaGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGC +
Preference number: 1 (lower is better)
Translates to: SRGDLQALPRLRWSG*IRSLSSSSYQCLLR
Trigger: GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTGGGCAAGGCCTGGAGATCCCCACGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp CCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCTGAGGTaGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGT +
Preference number: 1 (lower is better)
Translates to: PTWSRGDLQALPRLR*SGWIRSLSSSSYQC
Trigger: ACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR GCA 90 bp CAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTaGGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCCAGGT +
Preference number: 1 (lower is better)
Translates to: QDGSEVSPLHPTNVC*ARTLLSEGCRHAPG
Trigger: ACCTGGAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTaGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCC +
Preference number: 1 (lower is better)
Translates to: PTSGTFSSCLPVEAL*LGFGTDRDLDTAPS
Trigger: GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp AATCTCATCTCTGTGGTCAAGGGAGCAGAGTTAAGTCTGGCCAACTaGGGCAGGGGCTGGGCCCTCCCCTGCCATGCTACATTCAAGTAT +
Preference number: 1 (lower is better)
Translates to: NLISVVKGAELSLAN*GRGWALPCHATFKY
Trigger: ATACTTGAATGTAGCATGGCAGGGGAGGGCCCAGCCCCTGCCCCAGTTGGCCAGACTTAACTCTGCTCCCTTGACCACAGAGATGAGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp ATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTaGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGAT +
Preference number: 1 (lower is better)
Translates to: IRDLFLLSPSRGALA*FWHRQRLGYGTLHD
Trigger: ATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR TCA 90 bp TCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTaGCAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCC +
Preference number: 1 (lower is better)
Translates to: SSASVVLFWTVNSIH*QWLKGDSVWRSRVP
Trigger: GGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 90 bp GACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTaGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCA +
Preference number: 1 (lower is better)
Translates to: DLFLLSPSRGALAWF*HRQRLGYGTLHDIS
Trigger: TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGTCCCAGCACAGTGTGTaGGTCCAGGCTGCCCACGGT +
Preference number: 2 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWSQHSV*VQAAHG
Trigger: ACCGTGGGCAGCCTGGACGCACACACTGTGCTGGGA...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGTCTTGGTGGGTAGCGTaGTCCCTGGAGGTGGGTAGC +
Preference number: 2 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWSWWVA*SLEVGS
Trigger: GCTACCCACCTCCAGGGAGCACGCTACCCACCAAGA...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCTCCCAGCACAGTGTGTaGGTCCAGGCTGCCCACGGT +
Preference number: 2 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRSQHSV*VQAAHG
Trigger: ACCGTGGGCAGCCTGGACGCACACACTGTGCTGGGA...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR TCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAGAGGGATAGATGCCTaGGCCTGCTGGTGCCAGCCA +
Preference number: 2 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVRGIDA*ACWCQP
Trigger: TGGCTGGCACCAGCAGGCTCAGGCATCTATCCCTCT...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGAGCCCTGCGCTCCAGTaGCTGGCAGGAATTGCAGCT +
Preference number: 2 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRSPALQ*LAGIAA
Trigger: AGCTGCAATTCCTGCCAGGCACTGGAGCGCAGGGCT...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCTGCGCTCCAGTGCCTaGCAGGAATTGCAGCTGAGC +
Preference number: 2 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRLRSSA*QELQLS
Trigger: GCTCAGCTGCAATTCCTGCCAGGCACTGGAGCGCAG...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGACTGTGCAAGGGCTGTaGTGGGCTCAGCATTGCAAG +
Preference number: 2 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWTVQGL*WAQHCK
Trigger: CTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTTGTGTGTGTCCACTGTaGAAGGGCTGTGCTGGGCTC +
Preference number: 2 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFCVCPL*KGCAGL
Trigger: GAGCCCAGCACAGCCCTTGCACAGTGGACACACACA...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTGTGCAAGGGCTGTGCTaGGCTCAGCATTGCAAGGTC +
Preference number: 2 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFVQGLC*AQHCKV
Trigger: GACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCAC...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR TCA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAAGAGGGATAGATGCCTaGGCCTGCTGGTGCCAGCCA +
Preference number: 2 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTRGIDA*ACWCQP
Trigger: TGGCTGGCACCAGCAGGCTCAGGCATCTATCCCTCT...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGTATCGGTCCCGAATCTaGCAGCTGGTGACCCAGTGC +
Preference number: 2 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKEYRSRI*QLVTQC
Trigger: GCACTGGGTCACCAGCTGGCAGATTCGGGACCGATA...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGACTGTGCAAGGGCTGTaGTGGGCTCAGCATTGCAAG +
Preference number: 2 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRTVQGL*WAQHCK
Trigger: CTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCACTGTGCAAGGGCTGTaGTGGGCTCAGCATTGCAAG +
Preference number: 2 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVTVQGL*WAQHCK
Trigger: CTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGGGCCCTCCCCTGCCATaGTACATTCAAGTATCACAC +
Preference number: 2 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWGPPLP*YIQVSH
Trigger: GTGTGATACTTGAATGTAGCATGGCAGGGGAGGGCC...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp AGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAGTACCGTGGGGCGTGCTCCCTGGAGGTaGGTAGCGGTCCTCCTCCCG +
Preference number: 2 (lower is better)
Translates to: SPYTKKAQDRGSCYSTVGRAPWR*VAVLLP
Trigger: CGGGAGGAGGACCGCTACCCACCTCCAGGGAGCACG...CCCCACGGTACTATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR CCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGACCCAGTGCTTCTTGGTaGGTAGCGTGCTCCCTGGAG +
Preference number: 2 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGPSASW*VACSLE
Trigger: CTCCAGGGAGCACGCTACCCACCAAGAAGCACTGGG...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR CCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGTTGCCCAGGCTGAGGTaGTCAGGATGGATCAGAAGT +
Preference number: 2 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWLPRLR*SGWIRS
Trigger: ACTTCTGATCCATCCTGACCACCTCAGCCTGGGCAA...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR TCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGAGAATCTGCCAGCTGGTaGCCCAGTGCTTCTTGGTGG +
Preference number: 2 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGESASW*PSASWW
Trigger: CCACCAAGAAGCACTGGGTCACCAGCTGGCAGATTC...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTTCTTGGTGGGTAGCGTaGTCCCTGGAGGTGGGTAGC +
Preference number: 2 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPSWWVA*SLEVGS
Trigger: GCTACCCACCTCCAGGGAGCACGCTACCCACCAAGA...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGCTGAAGAGGGATAGATaGCTGAGCCTGCTGGTGCCA +
Preference number: 2 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKELKRDR*LSLLVP
Trigger: TGGCACCAGCAGGCTCAGGCATCTATCCCTCTTCAG...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCGTGCAAGGGCTGTGCTaGGCTCAGCATTGCAAGGTC +
Preference number: 2 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSVQGLC*AQHCKV
Trigger: GACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCAC...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACACTGAAGAGGGATAGATaGCTGAGCCTGCTGGTGCCA +
Preference number: 2 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTLKRDR*LSLLVP
Trigger: TGGCACCAGCAGGCTCAGGCATCTATCCCTCTTCAG...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCCCAGTGCTTCTTGGTaGGTAGCGTGCTCCCTGGAG +
Preference number: 2 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRPSASW*VACSLE
Trigger: CTCCAGGGAGCACGCTACCCACCAAGAAGCACTGGG...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR CCA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGGTGCAAGGGCTGTGCTaGGCTCAGCATTGCAAGGTC +
Preference number: 2 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTVQGLC*AQHCKV
Trigger: GACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCAC...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCGCTTTGGCTTGGTTTTaGCACAGACAGAGACTTGGA +
Preference number: 2 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLALAWF*HRQRLG
Trigger: TCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGC...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CAA 90 bp TGGGTAGCCTTTAGTGTAGCCCTGCGCTCCAGTGCCTGGCAGGAATaGCAGCTGAGCCTGACTGTCTCCTCCGCATCAGTAGTTTTATTC +
Preference number: 2 (lower is better)
Translates to: WVAFSVALRSSAWQE*QLSLTVSSASVVLF
Trigger: GAATAAAACTACTGATGCGGAGGAGACAGTCAGGCTCAGCTGCAATTCCTGCCAGGCACTGGAGCGCAGGGCTACACTAAAGGCTACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CAA 90 bp AGATGCACCCATAAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATaGCTCTTGCGTCTGAGCACGCAGGTCGTAAGAACATCCCCTGGG +
Preference number: 2 (lower is better)
Translates to: RCTHKAHSGDLLSSS*LLRLSTQVVRTSPG
Trigger: CCCAGGGGATGTTCTTACGACCTGCGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTTATGGGTGCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR GCA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCCTCCCGGATACGCACTaGATGGTACTTGGGCATAAT +
Preference number: 2 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSLPDTH*MVLGHN
Trigger: ATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAG...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp AAACTCCATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCAGCTGGTGACCCAGTaGTTCTTGGTGGGTAGCGTG +
Preference number: 2 (lower is better)
Translates to: KLHPLTMAQGGFSVEEPCQLVTQ*FLVGSV
Trigger: CACGCTACCCACCAAGAAGCACTGGGTCACCAGCTG...ACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTATCGGTCCCGAATCTaGCAGCTGGTGACCCAGTGC +
Preference number: 2 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMYRSRI*QLVTQC
Trigger: GCACTGGGTCACCAGCTGGCAGATTCGGGACCGATA...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCTCCCGGATACGCACTaGATGGTACTTGGGCATAAT +
Preference number: 2 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSLPDTH*MVLGHN
Trigger: ATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAG...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR GCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCTGAAGAGGGATAGATaGCTGAGCCTGCTGGTGCCA +
Preference number: 2 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRLKRDR*LSLLVP
Trigger: TGGCACCAGCAGGCTCAGGCATCTATCCCTCTTCAG...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACCGGATACGCACTGCATaGTACTTGGGCATAATCCGG +
Preference number: 2 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDRIRTA*YLGIIR
Trigger: CCGGATTATGCCCAAGTACCATGCAGTGCGTATCCG...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR CAA 90 bp CTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATaGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCC +
Preference number: 2 (lower is better)
Translates to: LLRISSFILDSKLHP*TMAQGGFSVEEPCP
Trigger: GGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTACGGATACGCACTGCATaGTACTTGGGCATAATCCGG +
Preference number: 2 (lower is better)
Translates to: LCSFGLRFLPALSVATILRIRTA*YLGIIR
Trigger: CCGGATTATGCCCAAGTACCATGCAGTGCGTATCCG...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR CCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGTCAGTAGTTTTATTCTaGACAGTAAACTCCATCCAT +
Preference number: 2 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWSVVLF*TVNSIH
Trigger: ATGGATGGAGTTTACTGTCCAGAATAAAACTACTGA...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR TCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACAAGCATTGCAAGGTCTTaGAGGAGATTCCAGGGCCCC +
Preference number: 2 (lower is better)
Translates to: CLLRISSFILDSKLHPLTSIARS*RRFQGP
Trigger: GGGGCCCTGGAATCTCCTTCAAGACCTTGCAATGCT...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGTCAGTAGTTTTATTCTaGACAGTAAACTCCATCCAT +
Preference number: 2 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTSVVLF*TVNSIH
Trigger: ATGGATGGAGTTTACTGTCCAGAATAAAACTACTGA...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCAGTAGTTTTATTCTaGACAGTAAACTCCATCCAT +
Preference number: 2 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMSVVLF*TVNSIH
Trigger: ATGGATGGAGTTTACTGTCCAGAATAAAACTACTGA...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGGGGGATCTCCAGGCCTaGCCCAGGCTGAGGTGGTCA +
Preference number: 3 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWGDLQA*PRLRWS
Trigger: TGACCACCTCAGCCTGGGCAAGGCCTGGAGATCCCC...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR TCA 72 bp TCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTaGAGGATGCCGCCATGCTCCAGGTCAGTCCCAGCA +
Preference number: 3 (lower is better)
Translates to: SYQCLLRQDPAL*RMPPCSRSVPA
Trigger: TGCTGGGACTGACCTGGAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp GGCTGGGCCCTCCCCTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGGCACAGACAGAGACTaGGATACGGCACCCTCCATG +
Preference number: 3 (lower is better)
Translates to: GWALPCHATFKYHTPRGLGTDRD*DTAPSM
Trigger: CATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCC...GAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAGGGGAGGGCCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR GCA 72 bp TGGAGGTGGGTAGCGGTCCTCCTCCCGGATACGCACTaGATGGTACTTGGGCATAATCCGGTAGTAGCGGGT +
Preference number: 3 (lower is better)
Translates to: WRWVAVLLPDTH*MVLGHNPVVAG
Trigger: ACCCGCTACTACCGGATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAGGAGGACCGCTACCCACCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR CCA 72 bp TGGGTAGCCTTTAGTGTAGCCCTGCGCTCCAGTGCCTaGCAGGAATTGCAGCTGAGCCTGACTGTCTCCTCC +
Preference number: 3 (lower is better)
Translates to: WVAFSVALRSSA*QELQLSLTVSS
Trigger: GGAGGAGACAGTCAGGCTCAGCTGCAATTCCTGCCAGGCACTGGAGCGCAGGGCTACACTAAAGGCTACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGCAGCATTGCAAGGTCTaGAAGGAGATTCCAGGGCCC +
Preference number: 3 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWQHCKV*KEIPGP
Trigger: GGGCCCTGGAATCTCCTTCAAGACCTTGCAATGCTG...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGGTGCTGGGCTCAGCATaGCAAGGTCTTGAAGGAGAT +
Preference number: 3 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWVLGSA*QGLEGD
Trigger: ATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCAC...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGGCACAGACAGAGACTaGGATACGGCACCCTCCATG +
Preference number: 3 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKGTDRD*DTAPSM
Trigger: CATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCC...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCGTGACCCAGTGCTTCTaGGTGGGTAGCGTGCTCCCT +
Preference number: 3 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRVTQCF*VGSVLP
Trigger: AGGGAGCACGCTACCCACCAAGAAGCACTGGGTCAC...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR GCA 72 bp GTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTaGTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATT +
Preference number: 3 (lower is better)
Translates to: VGPVCVSTVQGL*WAQHCKVLKEI
Trigger: AATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACACACACACAGGGCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 72 bp CTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTaGTTTTGGCACAGACAGAGACTTGGATACGGCACC +
Preference number: 3 (lower is better)
Translates to: LFLLSPSRGALA*FWHRQRLGYGT
Trigger: GGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CCA 72 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTaGCTTGGTTTTGGCACAGACAGAGACTTGGATACG +
Preference number: 3 (lower is better)
Translates to: GTFSSCLPVEAL*LGFGTDRDLDT
Trigger: CGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR-3UTR CAA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAGTGACCCAGTGCTTCTaGGTGGGTAGCGTGCTCCCT +
Preference number: 3 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISVTQCF*VGSVLP
Trigger: AGGGAGCACGCTACCCACCAAGAAGCACTGGGTCAC...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR-3UTR CAA 90 bp ATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATGGAGCGCCGGAAGGTTaGTCGGGGAGGGCATCAGTA +
Preference number: 3 (lower is better)
Translates to: ILVRSPYTKKAQDRGSCYGAPEG*SGRASV
Trigger: TACTGATGCCCTCCCCGACAAACCTTCCGGCGCTCC...ATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR TCA 72 bp TCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTaGCAATGGCTCAAGGGGGATTCAGTGTGGAGGAGC +
Preference number: 3 (lower is better)
Translates to: SVVLFWTVNSIH*QWLKGDSVWRS
Trigger: GCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCCCCCCTGGATCCAGTTaGCGCCGGCGGCGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLPPGSS*RRRRCG
Trigger: GCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGG...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGCGTGCTCCCTGGAGGTaGGTAGCGGTCCTCCTCCCG +
Preference number: 4 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWRAPWR*VAVLLP
Trigger: CGGGAGGAGGACCGCTACCCACCTCCAGGGAGCACG...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGACCCCCTGGATCCAGTTaGCGCCGGCGGCGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGPPGSS*RRRRCG
Trigger: GCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGG...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AATCCGGTAGTAGCGGGTCGGCTTAAAGAAGTCACACCGGGTGGGCCGGGGCAGCCCACCATGCGCCGCTaGTCTTCTAGCCCAGACCAC +
Preference number: 4 (lower is better)
Translates to: NPVVAGRLKEVTPGGPGQPTMRR*SSSPDH
Trigger: GTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGG...CTGCCCCGGCCCACCCGGTGTGACTTCTTTAAGCCGACCCGCTACTACCGGATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR GCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCACCCCCTGGATCCAGTTaGCGCCGGCGGCGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPPPGSS*RRRRCG
Trigger: GCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGG...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACCCGCTGGTGCCCAGCTaGCACATGCCGGTCTGCAAG +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHPLVPS*HMPVCK
Trigger: CTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGG...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGCCGCTGGTGCCCAGCTaGCACATGCCGGTCTGCAAG +
Preference number: 4 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKEPLVPS*HMPVCK
Trigger: CTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGG...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCCGCAGCAGCACGATGTaGTCCGACAGGCTCCCTACT +
Preference number: 4 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLRSSTM*SDRLPT
Trigger: AGTAGGGAGCCTGTCGGACCACATCGTGCTGCTGCG...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCCGTCCTTGTGGGCCGTaGGGGGACACAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSRPCGP*GDTGTQ
Trigger: CTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACG...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGGCCGTGGAAGACAGATaGCTGGCTGCGGGCAAATCG +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVAVEDR*LAAGKS
Trigger: CGATTTGCCCGCAGCCAGTCATCTGTCTTCCACGGC...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCGAGTGCGGGCTCGCTTaGAGAAGCCGCACTTCCACA +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRECGLA*RSRTST
Trigger: TGTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTC...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR GCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGAGACCAGGACTCTACCTaGAGGGCCCTGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGDQDST*RALAGH
Trigger: GTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTC...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGGCGCCCATATGTTGGTaGCGTGGGGCACCCGTCACA +
Preference number: 4 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKEAPICW*RGAPVT
Trigger: TGTGACGGGTGCCCCACGGCACCAACATATGGGCGC...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCTCTTGGTGGGTAGCGTaGTCCCTGGAGGTGGGTAGC +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVSWWVA*SLEVGS
Trigger: GCTACCCACCTCCAGGGAGCACGCTACCCACCAAGA...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGTCACAGTCGTCCTTGTaGGCCGTGAGGGGACACAGG +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVSQSSL*AVRGHR
Trigger: CCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGA...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AGGTGGGTAGCGGTCCTCCTCCCGGATACGCACTGCATGGTACTTGGGCATAATCCCACCATGCGCCGCTaGTCTTCTAGCCCAGACCAC +
Preference number: 4 (lower is better)
Translates to: RWVAVLLPDTHCMVLGHNPTMRR*SSSPDH
Trigger: GTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGG...ATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAGGAGGACCGCTACCCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGCAAAGGCAGAGCGGCTaGGGCCGTGAAGCAGGAGGG +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKQRQSG*GREAGG
Trigger: CCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTG...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGCGCAGCAGCACGATGTaGTCCGACAGGCTCCCTACT +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVRSSTM*SDRLPT
Trigger: AGTAGGGAGCCTGTCGGACCACATCGTGCTGCTGCG...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGCCAACACAGCTGGCCTaGCCACCAAGGTCCTATGGA +
Preference number: 4 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWPTQLA*PPRSYG
Trigger: TCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGG...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGCGGGTGGGTCAGCCTaGCTTTGCAAGCCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHAGGSA*LCKPPS
Trigger: GGAGGGAGGCTTGCAAAGCCAGGCTGACCCACCCGC...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS-3UTR TCA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCGTCCTTGTGGGCCGTaGGGGGACACAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSRPCGP*GDTGTQ
Trigger: CTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACG...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCGTGTGTAAGCCAGGGTaGTGTTCCGCCTGTAGTTGG +
Preference number: 4 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLVCKPG*CSACSW
Trigger: CCAACTACAGGCGGAACATCACCCTGGCTTACACAC...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTGCCGTGGAAGACAGATaGCTGGCTGCGGGCAAATCG +
Preference number: 4 (lower is better)
Translates to: PTSGTFSSCLPVEALWLGAVEDR*LAAGKS
Trigger: CGATTTGCCCGCAGCCAGTCATCTGTCTTCCACGGC...ACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGCTCGACGTGGACAGCTaGAGAAGTACTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVLDVDS*RSTGRS
Trigger: GGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAG...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCCTCGACGTGGACAGCTaGAGAAGTACTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVLDVDS*RSTGRS
Trigger: GGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAG...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGACCAGGACTCTACCTaGAGGGCCCTGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPDQDST*RALAGH
Trigger: GTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTC...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACAGCACTTGCCCACCATaGGCCGCTGGTCTTCTAGCC +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHSTCPP*AAGLLA
Trigger: GGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCT...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCAGCACTTGCCCACCATaGGCCGCTGGTCTTCTAGCC +
Preference number: 4 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSSTCPP*AAGLLA
Trigger: GGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCT...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTTCGTTGTGGTATGTCTaGCAGTCATCGCCGGGGTCG +
Preference number: 4 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFSLWYV*QSSPGS
Trigger: CGACCCCGGCGATGACTGGCAGACATACCACAACGA...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGCGCCCATATGTTGGTaGCGTGGGGCACCCGTCACA +
Preference number: 4 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTAPICW*RGAPVT
Trigger: TGTGACGGGTGCCCCACGGCACCAACATATGGGCGC...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGCGCCCATATGTTGGTaGCGTGGGGCACCCGTCACA +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHAPICW*RGAPVT
Trigger: TGTGACGGGTGCCCCACGGCACCAACATATGGGCGC...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGAAAGCGCCCACCTGCGTaGCCTTCAGCACCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGKRPPA*PSAPAS
Trigger: GGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTT...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCGACCTAGAACCAGTGTaGCCAAGGCTGCCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRDLEPV*PRLPAH
Trigger: ATGGGCTGGCAGCCTTGGGCACACTGGTTCTAGGTC...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp AATCCGGTAGTAGCGGGTCGGCTTAAAGAAGTCACACCGGGTGGGCCGGGGCAGGCTGTTCCACACCCGTaGTTTCACGGTCACATTGGT +
Preference number: 4 (lower is better)
Translates to: NPVVAGRLKEVTPGGPGQAVPHP*FHGHIG
Trigger: ACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGC...CTGCCCCGGCCCACCCGGTGTGACTTCTTTAAGCCGACCCGCTACTACCGGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGCCCACCATGCGCCGCTaGTCTTCTAGCCCAGACCAC +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKPTMRR*SSSPDH
Trigger: GTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGG...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGACAGCGCCCATATGTTaGTGCCGTGGGGCACCCGTC +
Preference number: 4 (lower is better)
Translates to: KSLLFILPMSAAPGPCSLTAPIC*CRGAPV
Trigger: GACGGGTGCCCCACGGCACCAACATATGGGCGCTGT...CAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGACAGCGCCCATATGTTaGTGCCGTGGGGCACCCGTC +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKTAPIC*CRGAPV
Trigger: GACGGGTGCCCCACGGCACCAACATATGGGCGCTGT...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTGCCCAAGCCCTCAAATaGGGCTCCCACAGCGATGTC +
Preference number: 4 (lower is better)
Translates to: PTSGTFSSCLPVEALWLGAQALK*GSHSDV
Trigger: GACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGC...ACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGGGGAGTAGCCGAAGGTaGCCAAGCCTGGCAGTCCGA +
Preference number: 4 (lower is better)
Translates to: KSLLFILPMSAAPGPCSLGSSRR*PSLAVR
Trigger: TCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCC...CAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACACAGGCGGGGAACTCTaGTCTCCCCCTGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHTGGEL*SPPGSS
Trigger: ACTGGATCCAGGGGGAGACCAGAGTTCCCCGCCTGT...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTCGCCCGCCTGGTTCATaGAGACATAGACGGCACCCC +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPRPPGS*RHRRHP
Trigger: GGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCG...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCAGCCTTTCTGTCTCTaGCGGCTGGCTCTTCATCTC +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRQPFCL*RLALHL
Trigger: GAGATGAAGAGCCAGCCGTCAGAGACAGAAAGGCTG...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR GCA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACACACGCACATAGCACTTaGCCACCATGCGCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTHAHST*PPCAAG
Trigger: ACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTG...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGTCGTTGTGGTATGTCTaGCAGTCATCGCCGGGGTCG +
Preference number: 4 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKESLWYV*QSSPGS
Trigger: CGACCCCGGCGATGACTGGCAGACATACCACAACGA...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACAAGCGCCCACCTGCGTaGCCTTCAGCACCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDKRPPA*PSAPAS
Trigger: GGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTT...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCCAGGGCAATGGCACTaGCAAAATAAGCGCCCACCT +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRPGQWH*QNKRPP
Trigger: AGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGG...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTTGCTGTACTGGAGCCTaGTTAGAGGCTGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFCCTGA*LEAAAA
Trigger: AGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCA...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCGGGTCAGCCTGGCTTTaGAAGCCTCCCTCCAGTCAG +
Preference number: 4 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSGSAWL*KPPSSQ
Trigger: CTGACTGGAGGGAGGCTTGCAAAGCCAGGCTGACCC...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGCAGCACCAGTCCGGTTaGTATAGTCATCACCCACAG +
Preference number: 4 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWQHQSG*YSHHPQ
Trigger: CTGTGGGTGATGACTATACCAACCGGACTGGTGCTG...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCCAGACCACAGCACCTTaGTGTACCGATGGGCACAGA +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVQTTAP*CTDGHR
Trigger: TCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTG...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCGGTCTGCCAGGGCAATaGCACTGCCAAAATAAGCGC +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVGLPGQ*HCQNKR
Trigger: GCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACC...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAAGGGTCCAACACAGCTaGCCTGGCCACCAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTRVQHS*PGHQGP
Trigger: AGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCCT...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCGTGTCTCTGCTGTACTaGAGCCTGCTTAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVVSLLY*SLLRGC
Trigger: GCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACAC...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTGTGTCTCTGCTGTACTaGAGCCTGCTTAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFVSLLY*SLLRGC
Trigger: GCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACAC...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCCTCCGCAGTTTTCATaGCAGCCTCACCCATCACTG +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRPPQFS*QPHPSL
Trigger: CAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGG...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGACAGGCGGGGAACTCTaGTCTCCCCCTGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: LPCYIQVSHPTWSRGDLQTGGEL*SPPGSS
Trigger: ACTGGATCCAGGGGGAGACCAGAGTTCCCCGCCTGT...CTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCTGCAGGTCTCCACCTaGCTCTTGCTTCAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRLQVST*LLLQQE
Trigger: TTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAG...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TTGCAAGGTCTTGAAGGAGATTCCAGGGCCCCAGAAAACATGCCTGCACTGAAGCGCCCGCCTGGTTCATaGAGACATAGACGGCACCCC +
Preference number: 4 (lower is better)
Translates to: LQGLEGDSRAPENMPALKRPPGS*RHRRHP
Trigger: GGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCG...CTTCAGTGCAGGCATGTTTTCTGGGGCCCTGGAATCTCCTTCAAGACCTTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGGGAATCCATCCTGGTTaGTGTCACCGATGCTGGCTA +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRGIHPG*CHRCWL
Trigger: TAGCCAGCATCGGTGACATCAACCAGGATGGATTCC...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGGGAATCCATCCTGGTTaGTGTCACCGATGCTGGCTA +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVGIHPG*CHRCWL
Trigger: TAGCCAGCATCGGTGACATCAACCAGGATGGATTCC...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTGTGTGTAAGCCAGGGTaGTGTTCCGCCTGTAGTTGG +
Preference number: 4 (lower is better)
Translates to: PTSGTFSSCLPVEALWLGVCKPG*CSACSW
Trigger: CCAACTACAGGCGGAACATCACCCTGGCTTACACAC...ACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTAAGTGGACCTCAGTGTaGTTCTCCATAGCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFKWTSV*FSIACA
Trigger: GGCACAGGCTATGGAGAATCACACTGAGGTCCACTT...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCTCCTCTGGTTCCGTTTaGAGGGGTTTCCTAGCTCAC +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVSSGSV*RGFLAH
Trigger: GTGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGA...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCCCCAGCCATCTACCCTaGCTCTGTCAAAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLPSHLP*LCQSLC
Trigger: ACAAAGACTTTGACAGAGTCAGGGTAGATGGCTGGG...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCTCCTCCACCAGCTCTaGGTCAATGTCCACAGAGAA +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRLLHQL*VNVHRE
Trigger: TTCTCTGTGGACATTGACTCAGAGCTGGTGGAGGAG...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTAGCACTTGCCCACCATaGGCCGCTGGTCTTCTAGCC +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPSTCPP*AAGLLA
Trigger: GGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCT...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCACACGCACATAGCACTTaGCCACCATGCGCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPHAHST*PPCAAG
Trigger: ACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTG...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp AAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGGTGCCCTTCAGCACCTaGTTCCTCTGCAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: KSLLFILPMSAAPGPCSLVPFST*FLCRSP
Trigger: TGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCAC...CAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGTGCCCTTCAGCACCTaGTTCCTCTGCAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHVPFST*FLCRSP
Trigger: TGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCAC...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACCCAGGGCAATGGCACTaGCAAAATAAGCGCCCACCT +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHPGQWH*QNKRPP
Trigger: AGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGG...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGGGTAGATGTAGACTTTaGCCAAGCCCTCAAATGGGG +
Preference number: 4 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWGRCRL*PSPQMG
Trigger: CCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACC...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCTCGCATCTGCAGGTTaGTGTCGCACTTGTTGTCTG +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRLASAG*CRTCCL
Trigger: CAGACAACAAGTGCGACAGCAACCTGCAGATGCGAG...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGTGCTGTACTGGAGCCTaGTTAGAGGCTGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKECCTGA*LEAAAA
Trigger: AGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCA...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCCCTCACCCATCACTGTaGCACCAAAGAAGCTCTGCA +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVPHPSL*HQRSSA
Trigger: TGCAGAGCTTCTTTGGTGGCACAGTGATGGGTGAGG...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCGCTGTTCCACACCCGTaGTTTCACGGTCACATTGGT +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRAVPHP*FHGHIG
Trigger: ACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGC...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp AAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGCAGCTGGTGACCCAGTaGTTCTTGGTGGGTAGCGTG +
Preference number: 4 (lower is better)
Translates to: KSLLFILPMSAAPGPCSLQLVTQ*FLVGSV
Trigger: CACGCTACCCACCAAGAAGCACTGGGTCACCAGCTG...CAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACCAGACCACAGCACCTTaGTGTACCGATGGGCACAGA +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHQTTAP*CTDGHR
Trigger: TCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTG...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCACAGCGCCCATATGTTaGTGCCGTGGGGCACCCGTC +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRTAPIC*CRGAPV
Trigger: GACGGGTGCCCCACGGCACCAACATATGGGCGCTGT...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AGGTGGGTAGCGGTCCTCCTCCCGGATACGCACTGCATGGTACTTGGGCATAATGGTCTGCCAGGGCAATaGCACTGCCAAAATAAGCGC +
Preference number: 4 (lower is better)
Translates to: RWVAVLLPDTHCMVLGHNGLPGQ*HCQNKR
Trigger: GCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACC...ATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAGGAGGACCGCTACCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp AGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAGTACCGTGGGGCAAAGGCAGAGCGGCTaGGGCCGTGAAGCAGGAGGG +
Preference number: 4 (lower is better)
Translates to: SPYTKKAQDRGSCYSTVGQRQSG*GREAGG
Trigger: CCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTG...CCCCACGGTACTATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCCCACAGCGATGTCCTaGAATCCATCCTGGTTGATG +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRPTAMS*NPSWLM
Trigger: CATCAACCAGGATGGATTCCAGGACATCGCTGTGGG...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGGCCCAAGCCCTCAAATaGGGCTCCCACAGCGATGTC +
Preference number: 4 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTAQALK*GSHSDV
Trigger: GACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGC...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGAAGGTGGCCAAGCCTaGCAGTCCGAGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKEGGQA*QSEFLS
Trigger: GGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTC...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGAAGGTGGCCAAGCCTaGCAGTCCGAGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: LPCYIQVSHPTWSRGDLQEGGQA*QSEFLS
Trigger: GGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTC...CTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AAACTCCATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTGGGAGTAGCCGAAGGTaGCCAAGCCTGGCAGTCCGA +
Preference number: 4 (lower is better)
Translates to: KLHPLTMAQGGFSVEEPCGSSRR*PSLAVR
Trigger: TCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCC...ACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACCCAACACAGCTGGCCTaGCCACCAAGGTCCTATGGA +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHPTQLA*PPRSYG
Trigger: TCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGG...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTAGGGTCCAACACAGCTaGCCTGGCCACCAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPRVQHS*PGHQGP
Trigger: AGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCCT...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGCTGGGCCCTCCCCTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCAGCAGCTCCATCCTCTaGTTCCGTTTGAAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: GWALPCHATFKYHTPRGLSSSIL*FRLKGF
Trigger: AAACCCCTTCAAACGGAACCAGAGGATGGAGCTGCT...GAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAGGGGAGGGCCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTCCTCCGCAGTTTTCATaGCAGCCTCACCCATCACTG +
Preference number: 4 (lower is better)
Translates to: PTSGTFSSCLPVEALWLGPPQFS*QPHPSL
Trigger: CAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGG...ACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATCAGGGACCTTTTCAGGAACCATTGCTATaGATGGTGATCTCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: GSRGIQCGGAVSPHQGPFQEPLL*MVISVG
Trigger: CCCCACGGAGATCACCATCCATAGCAATGGTTCCTG...AAAAGGTCCCTGATGTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGTCTGTCTCTGACGGCTaGCTCTTCATCTCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRSVSDG*LFISAF
Trigger: GAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGA...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTACCCCGGCCAGAAGGCTaGAAAAGGAAGGCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILPRPEG*KRKAGG
Trigger: CCCACCCGCCTTCCTTTTCCAGCCTTCTGGCCGGGG...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCACCCAGTGCTTCTTGGTaGGTAGCGTGCTCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPPSASW*VACSLE
Trigger: CTCCAGGGAGCACGCTACCCACCAAGAAGCACTGGG...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
3UTR CAA 72 bp GTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTaGAAGGAGATTCCAGGGCCCCAGAAAACATGCCTG +
Preference number: 4 (lower is better)
Translates to: VQGLCWAQHCKV*KEIPGPQKTCL
Trigger: CAGGCATGTTTTCTGGGGCCCTGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTACGTCCTTGTGGGCCGTaGGGGGACACAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILRPCGP*GDTGTQ
Trigger: CTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACG...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTAATACGGTGTTCTGGGTaGAGCCGCCGCTGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILIRCSG*SRRWCP
Trigger: TGGGCACCAGCGGCGGCTTCACCCAGAACACCGTAT...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGCTCGACGTGGACAGCTaGAGAAGTACTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTLDVDS*RSTGRS
Trigger: GGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAG...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCTTTGTAGTCCTCAATaGAGGTGCTGTTCCACACCC +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRLCSPQ*RCCSTP
Trigger: GGGTGTGGAACAGCACCTTCATTGAGGACTACAAAG...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCGAGTGCGGGCTCGCTTaGAGAAGCCGCACTTCCACA +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRECGLA*RSRTST
Trigger: TGTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTC...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR TCA 90 bp CTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGCAGCCTTTCTGTCTCTaGCGGCTGGCTCTTCATCTC +
Preference number: 4 (lower is better)
Translates to: LPCYIQVSHPTWSRGDLQQPFCL*RLALHL
Trigger: GAGATGAAGAGCCAGCCGTCAGAGACAGAAAGGCTG...CTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR TCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACGAATCTGCCAGCTGGTaGCCCAGTGCTTCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDESASW*PSASWW
Trigger: CCACCAAGAAGCACTGGGTCACCAGCTGGCAGATTC...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCTGTTGTCGCTCAGTCTaGCGATGGAGGGCGACCGAG +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRCCRSV*RWRATE
Trigger: CTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACA...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGCGAGCTGTAGGTCATTaGCACGCACATAGCACTTGC +
Preference number: 4 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKERAVGH*HAHSTC
Trigger: GCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCG...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCTCTCCACCTGACTCTTaGTTCAGCAAGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVSPPDS*FSKKTA
Trigger: CGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGA...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCCCTCACCCATCACTGTaGCACCAAAGAAGCTCTGCA +
Preference number: 4 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSPHPSL*HQRSSA
Trigger: TGCAGAGCTTCTTTGGTGGCACAGTGATGGGTGAGG...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGCCTTGCCCAGGCTCCCGGATACGCACTaGATGGTACTTGGGCATAAT +
Preference number: 4 (lower is better)
Translates to: IQVSHPTWSRGDLQALPRLPDTH*MVLGHN
Trigger: ATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAG...CCTGGGCAAGGCCTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACCAGCACCAGTCCGGTTaGTATAGTCATCACCCACAG +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHQHQSG*YSHHPQ
Trigger: CTGTGGGTGATGACTATACCAACCGGACTGGTGCTG...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCACAAAGGCAGAGCGGCTaGGGCCGTGAAGCAGGAGGG +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISQRQSG*GREAGG
Trigger: CCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTG...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGGCCACCAAGGTCCTATaGAGGATATTGATGACAGGC +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVATKVL*RILMTG
Trigger: GCCTGTCATCAATATCCTCCATAGGACCTTGGTGGC...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GAGCAGGCCATTAGCAGTAGGCCCTGTGTGTGTGTCCACTGTGCAAGGGCTGTGAGCAGCTCCATCCTCTaGTTCCGTTTGAAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: EQAISSRPCVCVHCARAVSSSIL*FRLKGF
Trigger: AAACCCCTTCAAACGGAACCAGAGGATGGAGCTGCT...CACAGCCCTTGCACAGTGGACACACACACAGGGCCTACTGCTAATGGCCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGCCTCCGCAGTTTTCATaGCAGCCTCACCCATCACTG +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKPPQFS*QPHPSL
Trigger: CAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGG...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CAA 72 bp GCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTaGCGTCTGAGCACGCAGGTCGTAAGAACATCCCCT +
Preference number: 4 (lower is better)
Translates to: AHSGDLLSSSLL*RLSTQVVRTSP
Trigger: AGGGGATGTTCTTACGACCTGCGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCGTTTCCTTGCTCCTCTaGGCCCCTGTAGCTATATTC +
Preference number: 4 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSVSLLL*APVAIF
Trigger: GAATATAGCTACAGGGGCTCAGAGGAGCAAGGAAAC...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCTGCAGGTCTCCACCTaGCTCTTGCTTCAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSLQVST*LLLQQE
Trigger: TTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAG...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGGAATCCATCCTGGTTaGTGTCACCGATGCTGGCTA +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKGIHPG*CHRCWL
Trigger: TAGCCAGCATCGGTGACATCAACCAGGATGGATTCC...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACAAACACAGCTCCACCTaGACACAGGAGGTAGCTGTA +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHKHSST*TQEVAV
Trigger: TACAGCTACCTCCTGTGTTCAGGTGGAGCTGTGTTT...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCGTTGTGGTATGTCTaGCAGTCATCGCCGGGGTCG +
Preference number: 4 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMSLWYV*QSSPGS
Trigger: CGACCCCGGCGATGACTGGCAGACATACCACAACGA...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACTCTCCACCTGACTCTTaGTTCAGCAAGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHSPPDS*FSKKTA
Trigger: CGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGA...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACCCAGGGCAATGGCACTaGCAAAATAAGCGCCCACCT +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDPGQWH*QNKRPP
Trigger: AGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGG...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACGGTAGATGTAGACTTTaGCCAAGCCCTCAAATGGGG +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHGRCRL*PSPQMG
Trigger: CCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACC...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTGGTAGATGTAGACTTTaGCCAAGCCCTCAAATGGGG +
Preference number: 4 (lower is better)
Translates to: PTSGTFSSCLPVEALWLGGRCRL*PSPQMG
Trigger: CCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACC...ACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACATTCTCCATAGCCTGTaGCTGGTTGAGGACTGGGTA +
Preference number: 4 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHILHSL*LVEDWV
Trigger: TACCCAGTCCTCAACCAGGCACAGGCTATGGAGAAT...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGCTCGCATCTGCAGGTTaGTGTCGCACTTGTTGTCTG +
Preference number: 4 (lower is better)
Translates to: VSLCSFGLRFLPALSVATLASAG*CRTCCL
Trigger: CAGACAACAAGTGCGACAGCAACCTGCAGATGCGAG...CGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGCCTCACCCATCACTGTaGCACCAAAGAAGCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LPCYIQVSHPTWSRGDLQPHPSL*HQRSSA
Trigger: TGCAGAGCTTCTTTGGTGGCACAGTGATGGGTGAGG...CTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGCTGTTCCACACCCGTaGTTTCACGGTCACATTGGT +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHAVPHP*FHGHIG
Trigger: ACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGC...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGCTGGGCCCTCCCCTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCTTCATCTCAGCCTTCTaGCTCTTAGCTTCATACAGG +
Preference number: 4 (lower is better)
Translates to: GWALPCHATFKYHTPRGLFISAF*LLASYR
Trigger: CCTGTATGAAGCTAAGAGGCAGAAGGCTGAGATGAA...GAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAGGGGAGGGCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR GCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCTATCGGTCCCGAATCTaGCAGCTGGTGACCCAGTGC +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRYRSRI*QLVTQC
Trigger: GCACTGGGTCACCAGCTGGCAGATTCGGGACCGATA...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGTTACACATCTCGTTGTaGTATGTCTGCCAGTCATCG +
Preference number: 4 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWLHISL*YVCQSS
Trigger: CGATGACTGGCAGACATACCACAACGAGATGTGTAA...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGACCGAGTTTCTCTCCATaGATTATCTGCTGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGPSFSP*IICWGC
Trigger: GCAGCCCCAGCAGATAATCCATGGAGAGAAACTCGG...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGGAAGGTGGCCAAGCCTaGCAGTCCGAGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMEGGQA*QSEFLS
Trigger: GGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTC...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAGTACCGTGGGGCGCAGCAGCACGATGTaGTCCGACAGGCTCCCTACT +
Preference number: 4 (lower is better)
Translates to: SPYTKKAQDRGSCYSTVGRSSTM*SDRLPT
Trigger: AGTAGGGAGCCTGTCGGACCACATCGTGCTGCTGCG...CCCCACGGTACTATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAGTACCGTGGGGAGGGTCCAACACAGCTaGCCTGGCCACCAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: SPYTKKAQDRGSCYSTVGRVQHS*PGHQGP
Trigger: AGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCCT...CCCCACGGTACTATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp AAACTCCATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTTGTTCCGCCTGTAGTTaGGGTTCCCAGCGCTCTGGT +
Preference number: 4 (lower is better)
Translates to: KLHPLTMAQGGFSVEEPCCSACS*GSQRSG
Trigger: ACCAGAGCGCTGGGAACCCCAACTACAGGCGGAACA...ACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCAGTAACTCCAGTGTCTaGCAATGTGTCTCTGGCATG +
Preference number: 4 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRSNSSV*QCVSGM
Trigger: CATGCCAGAGACACATTGCCAGACACTGGAGTTACT...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGGTCGCACTTGTTGTCTaGCCCGCACTCTTTCTGGAA +
Preference number: 4 (lower is better)
Translates to: VSLCSFGLRFLPALSVATVALVV*PALFLE
Trigger: TTCCAGAAAGAGTGCGGGCCAGACAACAAGTGCGAC...CGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACCAGGAACCATTGCTATaGATGGTGATCTCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHQEPLL*MVISVG
Trigger: CCCCACGGAGATCACCATCCATAGCAATGGTTCCTG...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACCGGATACGCACTGCATaGTACTTGGGCATAATCCGG +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHRIRTA*YLGIIR
Trigger: CCGGATTATGCCCAAGTACCATGCAGTGCGTATCCG...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGAAACACAGCTCCACCTaGACACAGGAGGTAGCTGTA +
Preference number: 4 (lower is better)
Translates to: VSLCSFGLRFLPALSVATKHSST*TQEVAV
Trigger: TACAGCTACCTCCTGTGTTCAGGTGGAGCTGTGTTT...CGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGACTTTGTAGTCCTCAATaGAGGTGCTGTTCCACACCC +
Preference number: 4 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGLCSPQ*RCCSTP
Trigger: GGGTGTGGAACAGCACCTTCATTGAGGACTACAAAG...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACACCCAGCCATCTACCCTaGCTCTGTCAAAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTPSHLP*LCQSLC
Trigger: ACAAAGACTTTGACAGAGTCAGGGTAGATGGCTGGG...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTCTCCTCCACCAGCTCTaGGTCAATGTCCACAGAGAA +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPLLHQL*VNVHRE
Trigger: TTCTCTGTGGACATTGACTCAGAGCTGGTGGAGGAG...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACATCATTGTTCAGGTCTaGCAGGGCAATGGCACTGCC +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDIIVQV*QGNGTA
Trigger: GGCAGTGCCATTGCCCTGGCAGACCTGAACAATGAT...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGATTCTCCATAGCCTGTaGCTGGTTGAGGACTGGGTA +
Preference number: 4 (lower is better)
Translates to: LPCYIQVSHPTWSRGDLQILHSL*LVEDWV
Trigger: TACCCAGTCCTCAACCAGGCACAGGCTATGGAGAAT...CTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCACTCGCATCTGCAGGTTaGTGTCGCACTTGTTGTCTG +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPLASAG*CRTCCL
Trigger: CAGACAACAAGTGCGACAGCAACCTGCAGATGCGAG...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp AGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAGTACCGTGGGGGACCTAGAACCAGTGTaGCCAAGGCTGCCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: SPYTKKAQDRGSCYSTVGDLEPV*PRLPAH
Trigger: ATGGGCTGGCAGCCTTGGGCACACTGGTTCTAGGTC...CCCCACGGTACTATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTAGACCTAGAACCAGTGTaGCCAAGGCTGCCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILDLEPV*PRLPAH
Trigger: ATGGGCTGGCAGCCTTGGGCACACTGGTTCTAGGTC...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACTCCCTCCAGTCAGCCTaGAAATCCACACTCTCTGAA +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHSLQSA*KSTLSE
Trigger: TTCAGAGAGTGTGGATTTGCAGGCTGACTGGAGGGA...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCATCACAGTCGTCCTTGTaGGCCGTGAGGGGACACAGG +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISSQSSL*AVRGHR
Trigger: CCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGA...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CACTGCATGGTACTTGGGCATAATCCGGTAGTAGCGGGTCGGCTTAAAGAAGTCCAGACCACAGCACCTTaGTGTACCGATGGGCACAGA +
Preference number: 4 (lower is better)
Translates to: HCMVLGHNPVVAGRLKEVQTTAP*CTDGHR
Trigger: TCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTG...GACTTCTTTAAGCCGACCCGCTACTACCGGATTATGCCCAAGTACCATGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp TTGCAAGGTCTTGAAGGAGATTCCAGGGCCCCAGAAAACATGCCTGCACTGAAGGGTCTGCCAGGGCAATaGCACTGCCAAAATAAGCGC +
Preference number: 4 (lower is better)
Translates to: LQGLEGDSRAPENMPALKGLPGQ*HCQNKR
Trigger: GCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACC...CTTCAGTGCAGGCATGTTTTCTGGGGCCCTGGAATCTCCTTCAAGACCTTGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCACCCACAGCGATGTCCTaGAATCCATCCTGGTTGATG +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPPTAMS*NPSWLM
Trigger: CATCAACCAGGATGGATTCCAGGACATCGCTGTGGG...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAGCCCAAGCCCTCAAATaGGGCTCCCACAGCGATGTC +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISAQALK*GSHSDV
Trigger: GACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGC...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACCCGAGTTTCTCTCCATaGATTATCTGCTGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDPSFSP*IICWGC
Trigger: GCAGCCCCAGCAGATAATCCATGGAGAGAAACTCGG...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGCCACCAAGGTCCTATaGAGGATATTGATGACAGGC +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKATKVL*RILMTG
Trigger: GCCTGTCATCAATATCCTCCATAGGACCTTGGTGGC...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACAGCAGCTCCATCCTCTaGTTCCGTTTGAAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHSSSIL*FRLKGF
Trigger: AAACCCCTTCAAACGGAACCAGAGGATGGAGCTGCT...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGCCCACTGGGCTCACCTaGAATTCATATTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKPTGLT*NSYFRG
Trigger: TCCCCTGAAATATGAATTCCAGGTGAGCCCAGTGGG...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTCAGGAACCATTGCTATaGATGGTGATCTCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPQEPLL*MVISVG
Trigger: CCCCACGGAGATCACCATCCATAGCAATGGTTCCTG...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TTGCAAGGTCTTGAAGGAGATTCCAGGGCCCCAGAAAACATGCCTGCACTGAAGGAAAAGGAAGGCGGGTaGGTCAGCCTGGCTTTGCAA +
Preference number: 4 (lower is better)
Translates to: LQGLEGDSRAPENMPALKEKEGG*VSLALQ
Trigger: TTGCAAAGCCAGGCTGACCCACCCGCCTTCCTTTTC...CTTCAGTGCAGGCATGTTTTCTGGGGCCCTGGAATCTCCTTCAAGACCTTGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
3UTR CAA 72 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTaGGATACGGCACCCTCCATGATATATCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: EALWLGFGTDRD*DTAPSMIYQSR
Trigger: CCTGCTCTGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CAA 72 bp AGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTaGGCTTGGTTTTGGCACAGACAGAGACTTGGATAC +
Preference number: 4 (lower is better)
Translates to: RDLFLLSPSRGA*AWFWHRQRLGY
Trigger: GTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CAA 72 bp CCCACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTaGCCAGCTCTCTCTGTAGCCACGATTTTAGAGATG +
Preference number: 4 (lower is better)
Translates to: PTVSLCSFGLRF*PALSVATILEM
Trigger: CATCTCTAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGTTTCCTTGCTCCTCTaGGCCCCTGTAGCTATATTC +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPVSLLL*APVAIF
Trigger: GAATATAGCTACAGGGGCTCAGAGGAGCAAGGAAAC...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TTGCAAGGTCTTGAAGGAGATTCCAGGGCCCCAGAAAACATGCCTGCACTGAAGTCCTCTGGTTCCGTTTaGAGGGGTTTCCTAGCTCAC +
Preference number: 4 (lower is better)
Translates to: LQGLEGDSRAPENMPALKSSGSV*RGFLAH
Trigger: GTGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGA...CTTCAGTGCAGGCATGTTTTCTGGGGCCCTGGAATCTCCTTCAAGACCTTGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCGAGCTGTAGGTCATTaGCACGCACATAGCACTTGC +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRRAVGH*HAHSTC
Trigger: GCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCG...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACACCGCTGGTGCCCAGCTaGCACATGCCGGTCTGCAAG +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTPLVPS*HMPVCK
Trigger: CTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGG...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACTCCTGGAATCCATCCTaGTTGATGTCACCGATGCTG +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDSWNPS*LMSPML
Trigger: CAGCATCGGTGACATCAACCAGGATGGATTCCAGGA...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCATCCTGGAATCCATCCTaGTTGATGTCACCGATGCTG +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPSWNPS*LMSPML
Trigger: CAGCATCGGTGACATCAACCAGGATGGATTCCAGGA...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CACTGCATGGTACTTGGGCATAATCCGGTAGTAGCGGGTCGGCTTAAAGAAGTCCCGAGTTTCTCTCCATaGATTATCTGCTGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: HCMVLGHNPVVAGRLKEVPSFSP*IICWGC
Trigger: GCAGCCCCAGCAGATAATCCATGGAGAGAAACTCGG...GACTTCTTTAAGCCGACCCGCTACTACCGGATTATGCCCAAGTACCATGCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCTGGCAATGTGTCTCTaGCATGGAGAAGAAGCCGTG +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRLAMCL*HGEEAV
Trigger: CACGGCTTCTTCTCCATGCCAGAGACACATTGCCAG...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGCTGGCAATGTGTCTCTaGCATGGAGAAGAAGCCGTG +
Preference number: 4 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMLAMCL*HGEEAV
Trigger: CACGGCTTCTTCTCCATGCCAGAGACACATTGCCAG...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACCCCACTGGGCTCACCTaGAATTCATATTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDPTGLT*NSYFRG
Trigger: TCCCCTGAAATATGAATTCCAGGTGAGCCCAGTGGG...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCTCTGTCTCTGACGGCTaGCTCTTCATCTCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRSVSDG*LFISAF
Trigger: GAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGA...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR TCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACAATACGGTGTTCTGGGTaGAGCCGCCGCTGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTIRCSG*SRRWCP
Trigger: TGGGCACCAGCGGCGGCTTCACCCAGAACACCGTAT...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGGTTTCCTTGCTCCTCTaGGCCCCTGTAGCTATATTC +
Preference number: 4 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMVSLLL*APVAIF
Trigger: GAATATAGCTACAGGGGCTCAGAGGAGCAAGGAAAC...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTACTGCAGGTCTCCACCTaGCTCTTGCTTCAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILLQVST*LLLQQE
Trigger: TTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAG...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACACGCCCGCCTGGTTCATaGAGACATAGACGGCACCCC +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTRPPGS*RHRRHP
Trigger: GGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCG...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp AAACTCCATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTAAACACAGCTCCACCTaGACACAGGAGGTAGCTGTA +
Preference number: 4 (lower is better)
Translates to: KLHPLTMAQGGFSVEEPCKHSST*TQEVAV
Trigger: TACAGCTACCTCCTGTGTTCAGGTGGAGCTGTGTTT...ACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAGTGTGTAAGCCAGGGTaGTGTTCCGCCTGTAGTTGG +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISVCKPG*CSACSW
Trigger: CCAACTACAGGCGGAACATCACCCTGGCTTACACAC...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCGTGAATTGGTCACATTaGTGCTCAAAAACAGTTTCT +
Preference number: 4 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLVNWSH*CSKTVS
Trigger: AGAAACTGTTTTTGAGCATCAATGTGACCAATTCAC...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGGTGAATTGGTCACATTaGTGCTCAAAAACAGTTTCT +
Preference number: 4 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWVNWSH*CSKTVS
Trigger: AGAAACTGTTTTTGAGCATCAATGTGACCAATTCAC...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACCAAATCCACACTCTCTaGACATGGGCTCCATACCAA +
Preference number: 4 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDQIHTL*TWAPYQ
Trigger: TTGGTATGGAGCCCATGTTCAGAGAGTGTGGATTTG...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS-3UTR GCA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCGCAAGTAGTCAGTGTTaGTGTTACACATCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSASSQC*CYTSRC
Trigger: ACAACGAGATGTGTAACAGCAACACTGACTACTTGC...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TTGCAAGGTCTTGAAGGAGATTCCAGGGCCCCAGAAAACATGCCTGCACTGAAGTCTCCACCTGACTCTTaGTTCAGCAAGAAGACAGCG +
Preference number: 4 (lower is better)
Translates to: LQGLEGDSRAPENMPALKSPPDS*FSKKTA
Trigger: CGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGA...CTTCAGTGCAGGCATGTTTTCTGGGGCCCTGGAATCTCCTTCAAGACCTTGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGATTCTCCATAGCCTGTaGCTGGTTGAGGACTGGGTA +
Preference number: 4 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMILHSL*LVEDWV
Trigger: TACCCAGTCCTCAACCAGGCACAGGCTATGGAGAAT...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCATGCTGTACTGGAGCCTaGTTAGAGGCTGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISCCTGA*LEAAAA
Trigger: AGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCA...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACTTACACATCTCGTTGTaGTATGTCTGCCAGTCATCG +
Preference number: 4 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHLHISL*YVCQSS
Trigger: CGATGACTGGCAGACATACCACAACGAGATGTGTAA...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACAGGGAGTAGCCGAAGGTaGCCAAGCCTGGCAGTCCGA +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTGSSRR*PSLAVR
Trigger: TCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCC...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTAGTAACTCCAGTGTCTaGCAATGTGTCTCTGGCATG +
Preference number: 4 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPSNSSV*QCVSGM
Trigger: CATGCCAGAGACACATTGCCAGACACTGGAGTTACT...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CACTGCATGGTACTTGGGCATAATCCGGTAGTAGCGGGTCGGCTTAAAGAAGTCCCCACTGGGCTCACCTaGAATTCATATTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: HCMVLGHNPVVAGRLKEVPTGLT*NSYFRG
Trigger: TCCCCTGAAATATGAATTCCAGGTGAGCCCAGTGGG...GACTTCTTTAAGCCGACCCGCTACTACCGGATTATGCCCAAGTACCATGCAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
3UTR CAA 72 bp CATAAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATaGCTCTTGCGTCTGAGCACGCAGGTCGTAAGAACA +
Preference number: 4 (lower is better)
Translates to: HKAHSGDLLSSS*LLRLSTQVVRT
Trigger: TGTTCTTACGACCTGCGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAAAGTGGACCTCAGTGTaGTTCTCCATAGCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISKWTSV*FSIACA
Trigger: GGCACAGGCTATGGAGAATCACACTGAGGTCCACTT...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACATGTTGTCGCTCAGTCTaGCGATGGAGGGCGACCGAG +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTCCRSV*RWRATE
Trigger: CTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACA...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCACGAGCTGTAGGTCATTaGCACGCACATAGCACTTGC +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISRAVGH*HAHSTC
Trigger: GCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCG...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGCAAGTAGTCAGTGTTaGTGTTACACATCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKASSQC*CYTSRC
Trigger: ACAACGAGATGTGTAACAGCAACACTGACTACTTGC...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAAGCGCCCACCTGCGTaGCCTTCAGCACCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: ILVRSPYTKKAQDRGSCYKRPPA*PSAPAS
Trigger: GGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTT...ATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAATCATTGTTCAGGTCTaGCAGGGCAATGGCACTGCC +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISIIVQV*QGNGTA
Trigger: GGCAGTGCCATTGCCCTGGCAGACCTGAACAATGAT...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCATTACACATCTCGTTGTaGTATGTCTGCCAGTCATCG +
Preference number: 4 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPLHISL*YVCQSS
Trigger: CGATGACTGGCAGACATACCACAACGAGATGTGTAA...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTAGCCACCAAGGTCCTATaGAGGATATTGATGACAGGC +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILATKVL*RILMTG
Trigger: GCCTGTCATCAATATCCTCCATAGGACCTTGGTGGC...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCACTGGCAATGTGTCTCTaGCATGGAGAAGAAGCCGTG +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISLAMCL*HGEEAV
Trigger: CACGGCTTCTTCTCCATGCCAGAGACACATTGCCAG...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAGTCGCACTTGTTGTCTaGCCCGCACTCTTTCTGGAA +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISVALVV*PALFLE
Trigger: TTCCAGAAAGAGTGCGGGCCAGACAACAAGTGCGAC...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATATCCTCAATAATGTaGTGGTCAGGGTCACTTTTC +
Preference number: 4 (lower is better)
Translates to: VSLCSFGLRFLPALSVATISSIM*WSGSLF
Trigger: GAAAAGTGACCCTGACCATCACATTATTGAGGATAT...CGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATGACCAGGACTCTACCTaGAGGGCCCTGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDDQDST*RALAGH
Trigger: GTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTC...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp ATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATCACGCACATAGCACTTaGCCACCATGCGCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: ILVRSPYTKKAQDRGSCYHAHST*PPCAAG
Trigger: ACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTG...ATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCATCCTGGAATCCATCCTaGTTGATGTCACCGATGCTG +
Preference number: 4 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISSWNPS*LMSPML
Trigger: CAGCATCGGTGACATCAACCAGGATGGATTCCAGGA...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACACCAACACAGCTGGCCTaGCCACCAAGGTCCTATGGA +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTPTQLA*PPRSYG
Trigger: TCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGG...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACATGTTCCGCCTGTAGTTaGGGTTCCCAGCGCTCTGGT +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTCSACS*GSQRSG
Trigger: ACCAGAGCGCTGGGAACCCCAACTACAGGCGGAACA...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATACAGGCGGGGAACTCTaGTCTCCCCCTGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: ILVRSPYTKKAQDRGSCYTGGEL*SPPGSS
Trigger: ACTGGATCCAGGGGGAGACCAGAGTTCCCCGCCTGT...ATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp ATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATTGTTCCGCCTGTAGTTaGGGTTCCCAGCGCTCTGGT +
Preference number: 4 (lower is better)
Translates to: ILVRSPYTKKAQDRGSCYCSACS*GSQRSG
Trigger: ACCAGAGCGCTGGGAACCCCAACTACAGGCGGAACA...ATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGGTGAATTGGTCACATTaGTGCTCAAAAACAGTTTCT +
Preference number: 4 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTVNWSH*CSKTVS
Trigger: AGAAACTGTTTTTGAGCATCAATGTGACCAATTCAC...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACACTCCTCCACCAGCTCTaGGTCAATGTCCACAGAGAA +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTLLHQL*VNVHRE
Trigger: TTCTCTGTGGACATTGACTCAGAGCTGGTGGAGGAG...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACAGTCGCACTTGTTGTCTaGCCCGCACTCTTTCTGGAA +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTVALVV*PALFLE
Trigger: TTCCAGAAAGAGTGCGGGCCAGACAACAAGTGCGAC...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTAATATCCTCAATAATGTaGTGGTCAGGGTCACTTTTC +
Preference number: 4 (lower is better)
Translates to: LCSFGLRFLPALSVATILISSIM*WSGSLF
Trigger: GAAAAGTGACCCTGACCATCACATTATTGAGGATAT...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATGTGTCTCTGCTGTACTaGAGCCTGCTTAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDVSLLY*SLLRGC
Trigger: GCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACAC...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
3UTR CAA 72 bp ATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATaGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: ISSFILDSKLHP*TMAQGGFSVEE
Trigger: CTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATAAGTGGACCTCAGTGTaGTTCTCCATAGCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDKWTSV*FSIACA
Trigger: GGCACAGGCTATGGAGAATCACACTGAGGTCCACTT...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR TCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATTCCTCTGGTTCCGTTTaGAGGGGTTTCCTAGCTCAC +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDSSGSV*RGFLAH
Trigger: GTGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGA...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATATCATTGTTCAGGTCTaGCAGGGCAATGGCACTGCC +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDIIVQV*QGNGTA
Trigger: GGCAGTGCCATTGCCCTGGCAGACCTGAACAATGAT...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCAGCACCAGTCCGGTTaGTATAGTCATCACCCACAG +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDQHQSG*YSHHPQ
Trigger: CTGTGGGTGATGACTATACCAACCGGACTGGTGCTG...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp TGTCTCCTCCGCATCAGTAGTTTTATTCTGGACAGTAAACTCCATCCATTGACAGCAAGTAGTCAGTGTTaGTGTTACACATCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: CLLRISSFILDSKLHPLTASSQC*CYTSRC
Trigger: ACAACGAGATGTGTAACAGCAACACTGACTACTTGC...TGTCAATGGATGGAGTTTACTGTCCAGAATAAAACTACTGATGCGGAGGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATAGTAACTCCAGTGTCTaGCAATGTGTCTCTGGCATG +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDSNSSV*QCVSGM
Trigger: CATGCCAGAGACACATTGCCAGACACTGGAGTTACT...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR GCA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATTTCATCTCAGCCTTCTaGCTCTTAGCTTCATACAGG +
Preference number: 4 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDFISAF*LLASYR
Trigger: CCTGTATGAAGCTAAGAGGCAGAAGGCTGAGATGAA...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS GCA 90 bp GCTAGTGTGACAGGCGGGGAACTCTGGTCTCCCCCTGGATCCAGTTaGCGCCGGCGGCGCTGTGGCGACAGTGGTGTGACTCCAGGGTCA +
Preference number: 5 (lower is better)
Translates to: ASVTGGELWSPPGSS*RRRRCGDSGVTPGS
Trigger: TGACCCTGGAGTCACACCACTGTCGCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGACCAGAGTTCCCCGCCTGTCACACTAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGCTGGGCCCTCCCCTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCTCCCCCTGGATCCAGTaGCCGCCGGCGGCGCTGTGG +
Preference number: 5 (lower is better)
Translates to: GWALPCHATFKYHTPRGLSPWIQ*PPAALW
Trigger: CCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGA...GAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAGGGGAGGGCCCAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCTCCCCCTGGATCCAGTaGCCGCCGGCGGCGCTGTGG +
Preference number: 5 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLSPWIQ*PPAALW
Trigger: CCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGA...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CCCACATCAGGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTCCCCCTGGATCCAGTaGCCGCCGGCGGCGCTGTGG +
Preference number: 5 (lower is better)
Translates to: PTSGTFSSCLPVEALWLGSPWIQ*PPAALW
Trigger: CCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGA...ACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCCTGATGTGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp GGAACTCTGGTCTCCCCCTGGATCCAGTTGCCGCCGGCGGCGCTGTaGCGACAGTGGTGTGACTCCAGGGTCAGAGAGAGTAAGGTTGAG +
Preference number: 5 (lower is better)
Translates to: GTLVSPWIQLPPAAL*RQWCDSRVRESKVE
Trigger: CTCAACCTTACTCTCTCTGACCCTGGAGTCACACCACTGTCGCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGACCAGAGTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 90 bp TCCAGTTGTAGGCACCAGGGGCACCGAAGTATACGGTGTTCTGGGTaGAGCCGCCGCTGGTGCCCAGCTGGCACATGCCGGTCTGCAAGT +
Preference number: 5 (lower is better)
Translates to: SSCRHQGHRSIRCSG*SRRWCPAGTCRSAS
Trigger: ACTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAGAACACCGTATACTTCGGTGCCCCTGGTGCCTACAACTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS GCA 90 bp CATCGCCGGGGTCGAGCTGTAGGTCATTGCCACGCACATAGCACTTaGCCACCATGCGCCGCTGGTCTTCTAGCCCAGACCACAGCACCT +
Preference number: 5 (lower is better)
Translates to: HRRGRAVGHCHAHST*PPCAAGLLAQTTAP
Trigger: AGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCGACCCCGGCGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CCA 90 bp GAGCCCCGGCCAGAAGGCTGGAAAAGGAAGGCGGGTGGGTCAGCCTaGCTTTGCAAGCCTCCCTCCAGTCAGCCTGCAAATCCACACTCT +
Preference number: 5 (lower is better)
Translates to: EPRPEGWKRKAGGSA*LCKPPSSQPANPHS
Trigger: AGAGTGTGGATTTGCAGGCTGACTGGAGGGAGGCTTGCAAAGCCAGGCTGACCCACCCGCCTTCCTTTTCCAGCCTTCTGGCCGGGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS-3UTR CAA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGCAGCGGGCACGGCCATaGGAGCAGGTCAACACAGTC +
Preference number: 5 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWQRARP*EQVNTV
Trigger: GACTGTGTTGACCTGCTCCAATGGCCGTGCCCGCTG...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGCTGGGCCCTCCCCTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCTGGGTCAGCCTGGCTTaGCAAGCCTCCCTCCAGTCA +
Preference number: 5 (lower is better)
Translates to: GWALPCHATFKYHTPRGLWVSLA*QASLQS
Trigger: TGACTGGAGGGAGGCTTGCAAAGCCAGGCTGACCCA...GAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAGGGGAGGGCCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS GCA 90 bp GGTCGAGCTGTAGGTCATTGCCACGCACATAGCACTTGCCCACCATaGGCCGCTGGTCTTCTAGCCCAGACCACAGCACCTTGGTGTACC +
Preference number: 5 (lower is better)
Translates to: GRAVGHCHAHSTCPP*AAGLLAQTTAPWCT
Trigger: GGTACACCAAGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS GCA 90 bp GGTCCTGCCACCCATCATTGTTCAGGTCTGCCAGGGCAATGGCACTaGCAAAATAAGCGCCCACCTGCGTGCCCTTCAGCACCTGCTTCC +
Preference number: 5 (lower is better)
Translates to: GPATHHCSGLPGQWH*QNKRPPACPSAPAS
Trigger: GGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp CCAGGAGGTCCTGCCACCCATCATTGTTCAGGTCTGCCAGGGCAATaGCACTGCCAAAATAAGCGCCCACCTGCGTGCCCTTCAGCACCT +
Preference number: 5 (lower is better)
Translates to: PGGPATHHCSGLPGQ*HCQNKRPPACPSAP
Trigger: AGGTGCTGAAGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGACCTCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp CCACACCCGTGCTTTCACGGTCACATTGGTAATGTTGGAGGTGTCTaGAAGGGGGCACTCCAGCCACACACAGCGGGCACGGCCATTGGA +
Preference number: 5 (lower is better)
Translates to: PHPCFHGHIGNVGGV*KGALQPHTAGTAIG
Trigger: TCCAATGGCCGTGCCCGCTGTGTGTGGCTGGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGGACAGCGCCCATATGTaGGTGCCGTGGGGCACCCGT +
Preference number: 5 (lower is better)
Translates to: VSLCSFGLRFLPALSVATDSAHM*VPWGTR
Trigger: ACGGGTGCCCCACGGCACCAACATATGGGCGCTGTC...CGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCGACAGCGCCCATATGTaGGTGCCGTGGGGCACCCGT +
Preference number: 5 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSDSAHM*VPWGTR
Trigger: ACGGGTGCCCCACGGCACCAACATATGGGCGCTGTC...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 90 bp CACCTGCGTGCCCTTCAGCACCTGCTTCCTCTGCAGGTCTCCACCTaGCTCTTGCTTCAGCAAGAAGACAGCGCCCATATGTTGGTGCCG +
Preference number: 5 (lower is better)
Translates to: HLRALQHLLPLQVST*LLLQQEDSAHMLVP
Trigger: CGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCACGCAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 90 bp TGTGGTATGTCTGCCAGTCATCGCCGGGGTCGAGCTGTAGGTCATTaGCACGCACATAGCACTTGCCCACCATGCGCCGCTGGTCTTCTA +
Preference number: 5 (lower is better)
Translates to: CGMSASHRRGRAVGH*HAHSTCPPCAAGLL
Trigger: TAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTGGCAATGACCTACAGCTCGACCCCGGCGATGACTGGCAGACATACCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS GCA 90 bp GTGCCCTTCAGCACCTGCTTCCTCTGCAGGTCTCCACCTGACTCTTaGTTCAGCAAGAAGACAGCGCCCATATGTTGGTGCCGTGGGGCA +
Preference number: 5 (lower is better)
Translates to: VPFSTCFLCRSPPDS*FSKKTAPICWCRGA
Trigger: TGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp CACATCCATCTTCCCGCTCAGGGAGTAGCCGAAGGTGGCCAAGCCTaGCAGTCCGAGTTTCTCTCCATGGATTATCTGCTGGGGCTGCCT +
Preference number: 5 (lower is better)
Translates to: HIHLPAQGVAEGGQA*QSEFLSMDYLLGLP
Trigger: AGGCAGCCCCAGCAGATAATCCATGGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGAGGTAGCGCTGTaGTCGCTCAGTCTGCCGATG +
Preference number: 5 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVKEVAL*SLSLPM
Trigger: CATCGGCAGACTGAGCGACAACAGCGCTACCTCCTT...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCCCAGACCACAGCACCTaGGTGTACCGATGGGCACAG +
Preference number: 5 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSPDHST*VYRWAQ
Trigger: CTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGG...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CCCTGGGGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCTCCTGCCACCCATCATaGTTCAGGTCTGCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: PWGRGRKPQAAQNLISVVSCHPS*FRSARA
Trigger: TGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGA...GACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCCCCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACCAGCGGGCACGGCCATaGGAGCAGGTCAACACAGTC +
Preference number: 5 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHQRARP*EQVNTV
Trigger: GACTGTGTTGACCTGCTCCAATGGCCGTGCCCGCTG...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 90 bp GCAGGAGGGAAGGTTGATCAGGGAAGGATGCGCCCGCCTGGTTCATaGAGACATAGACGGCACCCCCTACCTCCTCTTTCCGTTCGAAGT +
Preference number: 5 (lower is better)
Translates to: AGGKVDQGRMRPPGS*RHRRHPLPPLSVRS
Trigger: ACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCGCATCCTTCCCTGATCAACCTTCCCTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 90 bp CGCTGGTGCCCAGCTGGCACATGCCGGTCTGCAAGTAGTCAGTGTTaGTGTTACACATCTCGTTGTGGTATGTCTGCCAGTCATCGCCGG +
Preference number: 5 (lower is better)
Translates to: RWCPAGTCRSASSQC*CYTSRCGMSASHRR
Trigger: CCGGCGATGACTGGCAGACATACCACAACGAGATGTGTAACAGCAACACTGACTACTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CCA 90 bp TTGAAGGGGTTTCCTAGCTCACACAGGATGGTCTCGTTATTAGCTTaGCAGGTCCCAGACGGGCGCACGGAGGACAGTAGCAGGGCGGAT +
Preference number: 5 (lower is better)
Translates to: LKGFPSSHRMVSLLA*QVPDGRTEDSSRAD
Trigger: ATCCGCCCTGCTACTGTCCTCCGTGCGCCCGTCTGGGACCTGCCAAGCTAATAACGAGACCATCCTGTGTGAGCTAGGAAACCCCTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CACGGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCCAGACCACAGCACCTaGGTGTACCGATGGGCACAG +
Preference number: 5 (lower is better)
Translates to: HGLSLFLRAAFLASSLCSPDHST*VYRWAQ
Trigger: CTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGG...GCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGACCAGACCACAGCACCTaGGTGTACCGATGGGCACAG +
Preference number: 5 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGPDHST*VYRWAQ
Trigger: CTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGG...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACTCCTGCCACCCATCATaGTTCAGGTCTGCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHSCHPS*FRSARA
Trigger: TGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGA...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp AGGTGGGTAGCGGTCCTCCTCCCGGATACGCACTGCATGGTACTTGGGCATAATAAGCAGGAGGGAAGGTaGATCAGGGAAGGATGCGCC +
Preference number: 5 (lower is better)
Translates to: RWVAVLLPDTHCMVLGHNKQEGR*IREGCA
Trigger: GGCGCATCCTTCCCTGATCAACCTTCCCTCCTGCTT...ATTATGCCCAAGTACCATGCAGTGCGTATCCGGGAGGAGGACCGCTACCCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CAA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTCGAGTGCGGGCTCGCTaGAAGAAGCCGCACTTCCAC +
Preference number: 5 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPRVRAR*KKPHFH
Trigger: GTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTCG...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS GCA 90 bp CCACCTGACTCTTGCTTCAGCAAGAAGACAGCGCCCATATGTTGGTaGCGTGGGGCACCCGTCACAACAGTGATGATGTCCGTGGGATGT +
Preference number: 5 (lower is better)
Translates to: PPDSCFSKKTAPICW*RGAPVTTVMMSVGC
Trigger: ACATCCCACGGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 90 bp TTCTTAGTGTCTCTGCTGTACTGGAGCCTGCTTAGAGGCTGCAGCTaGTCAGACAGGAAGGCTGCTCGCATCTGCAGGTTGCTGTCGCAC +
Preference number: 5 (lower is better)
Translates to: FLVSLLYWSLLRGCS*SDRKAARICRLLSH
Trigger: GTGCGACAGCAACCTGCAGATGCGAGCAGCCTTCCTGTCTGAGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACACTAAGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 90 bp GTCAGCCTTTCTGTCTCTGACGGCTGGCTCTTCATCTCAGCCTTCTaGCTCTTAGCTTCATACAGGGCACGAGTGCGGGCTCGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: VSLSVSDGWLFISAF*LLASYRARVRARLK
Trigger: CTTCAAGCGAGCCCGCACTCGTGCCCTGTATGAAGCTAAGAGGCAGAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGAAAGGCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS CCA 90 bp TCTCCACCTGACTCTTGCTTCAGCAAGAAGACAGCGCCCATATGTTaGTGCCGTGGGGCACCCGTCACAACAGTGATGATGTCCGTGGGA +
Preference number: 5 (lower is better)
Translates to: SPPDSCFSKKTAPIC*CRGAPVTTVMMSVG
Trigger: TCCCACGGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp CCCGGAGCTGCTGTGGTAGATGTAGACTTTGCCCAAGCCCTCAAATaGGGCTCCCACAGCGATGTCCTGGAATCCATCCTGGTTGATGTC +
Preference number: 5 (lower is better)
Translates to: PGAAVVDVDFAQALK*GSHSDVLESILVDV
Trigger: GACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACCACAGCAGCTCCGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp CTGCAAGTTGTCCTGGTGACTCGACGTGGACAGCTGAAGAAGTACTaGGAGGTCCCTCGTGTGCAACGTTACCCCGATGACCTCAAAGGC +
Preference number: 5 (lower is better)
Translates to: LQVVLVTRRGQLKKY*EVPRVQRYPDDLKG
Trigger: GCCTTTGAGGTCATCGGGGTAACGTTGCACACGAGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGACAACTTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp ACCAGTGTGCCCAAGGCTGCCAGCCCATCTCCCACTGGGCTCACCTaGAATTCATATTTCAGGGGACTTCCCACATCCTCCGCAGTTTTC +
Preference number: 5 (lower is better)
Translates to: TSVPKAASPSPTGLT*NSYFRGLPTSSAVF
Trigger: GAAAACTGCGGAGGATGTGGGAAGTCCCCTGAAATATGAATTCCAGGTGAGCCCAGTGGGAGATGGGCTGGCAGCCTTGGGCACACTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGAAGCAGGAGGGAAGGTaGATCAGGGAAGGATGCGCC +
Preference number: 5 (lower is better)
Translates to: VSLCSFGLRFLPALSVATKQEGR*IREGCA
Trigger: GGCGCATCCTTCCCTGATCAACCTTCCCTCCTGCTT...CGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCGAGTGCGGGCTCGCTaGAAGAAGCCGCACTTCCAC +
Preference number: 5 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRRVRAR*KKPHFH
Trigger: GTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTCG...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CAA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCAGTGACCCAGTGCTTCTaGGTGGGTAGCGTGCTCCCT +
Preference number: 5 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPVTQCF*VGSVLP
Trigger: AGGGAGCACGCTACCCACCAAGAAGCACTGGGTCAC...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120375.8
CDS CCA 90 bp GGGTCACTTTTCTCTGAAATGTCCATCCGTTCACAGTCGTCCTTGTaGGCCGTGAGGGGACACAGGTACACAGCACCAGTCCGGTTGGTA +
Preference number: 5 (lower is better)
Translates to: GSLFSEMSIRSQSSL*AVRGHRYTAPVRLV
Trigger: TACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAAGTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CCA 90 bp GCAAAGTCAGGAGTACGGGCTGCAAGTTGTCCTGGTGACTCGACGTaGACAGCTGAAGAAGTACTGGGAGGTCCCTCGTGTGCAACGTTA +
Preference number: 5 (lower is better)
Translates to: AKSGVRAASCPGDST*TAEEVLGGPSCATL
Trigger: TAACGTTGCACACGAGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGACAACTTGCAGCCCGTACTCCTGACTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp TTGACAAGGTTTCCAGACGGCTGGCAGGGCCAGGAACCATTGCTATaGATGGTGATCTCCGTGGGGTACAGCAGCCACTTGCCATTGGTA +
Preference number: 5 (lower is better)
Translates to: LTRFPDGWQGQEPLL*MVISVGYSSHLPLV
Trigger: TACCAATGGCAAGTGGCTGCTGTACCCCACGGAGATCACCATCCATAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp TCAGAGAGAGTAAGGTTGAGAGGGTTGACAAGGTTTCCAGACGGCTaGCAGGGCCAGGAACCATTGCTATGGATGGTGATCTCCGTGGGG +
Preference number: 5 (lower is better)
Translates to: SERVRLRGLTRFPDG*QGQEPLLWMVISVG
Trigger: CCCCACGGAGATCACCATCCATAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCCTGTTACACATCTCGTaGTGGTATGTCTGCCAGTCA +
Preference number: 5 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLLLHIS*WYVCQS
Trigger: TGACTGGCAGACATACCACAACGAGATGTGTAACAG...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGTCCTGCCACCCATCATaGTTCAGGTCTGCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTSCHPS*FRSARA
Trigger: TGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGA...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGAGCTCGCATCTGCAGGTaGCTGTCGCACTTGTTGTCT +
Preference number: 5 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGARICR*LSHLLS
Trigger: AGACAACAAGTGCGACAGCAACCTGCAGATGCGAGC...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp TCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGCTCGCATCTGCAGGTaGCTGTCGCACTTGTTGTCT +
Preference number: 5 (lower is better)
Translates to: SLLFILPMSAAPGPCSLKARICR*LSHLLS
Trigger: AGACAACAAGTGCGACAGCAACCTGCAGATGCGAGC...CTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCCATGCTCTGGCTGCTCGGTGAATaGGTCACATTGATGCTCAAA +
Preference number: 5 (lower is better)
Translates to: LPMSAAPGPCSLKDAAMLWLLGE*VTLMLK
Trigger: TTTGAGCATCAATGTGACCAATTCACCGAGCAGCCA...GAGCATGGCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCATCCTCTGGTTCCGTTaGAAGGGGTTTCCTAGCTCA +
Preference number: 5 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRILWFR*KGFPSS
Trigger: TGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGAT...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACACAGGGCCAGGAACCATaGCTATGGATGGTGATCTCC +
Preference number: 5 (lower is better)
Translates to: GTFSSCLPVEALWLGFGTQGQEP*LWMVIS
Trigger: GGAGATCACCATCCATAGCAATGGTTCCTGGCCCTG...TGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGAGAGGACCTGGGAAATCAGCCTCCACTGCTAGAATGGGGATGCAGCCCCTGGGCTTTCACGGTCACATaGGTAATGTTGGAGGTGTCT +
Preference number: 5 (lower is better)
Translates to: GEDLGNQPPLLEWGCSPWAFTVT*VMLEVS
Trigger: AGACACCTCCAACATTACCAATGTGACCGTGAAAGC...CCAGGGGCTGCATCCCCATTCTAGCAGTGGAGGCTGATTTCCCAGGTCCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 90 bp AACAGTTTCTTAGTGTCTCTGCTGTACTGGAGCCTGCTTAGAGGCTaGAGCTGCTCAGACAGGAAGGCTGCTCGCATCTGCAGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: NSFLVSLLYWSLLRG*SCSDRKAARICRLL
Trigger: CAGCAACCTGCAGATGCGAGCAGCCTTCCTGTCTGAGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACACTAAGAAACTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp AAGCCCTCAAATGGGGCTCCCACAGCGATGTCCTGGAATCCATCCTaGTTGATGTCACCGATGCTGGCTATAGAGATGCCAAAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: KPSNGAPTAMSWNPS*LMSPMLAIEMPKAE
Trigger: CTCTGCCTTTGGCATCTCTATAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 90 bp GGTTTTCATCCACATCCATCTTCCCGCTCAGGGAGTAGCCGAAGGTaGCCAAGCCTGGCAGTCCGAGTTTCTCTCCATGGATTATCTGCT +
Preference number: 5 (lower is better)
Translates to: GFHPHPSSRSGSSRR*PSLAVRVSLHGLSA
Trigger: AGCAGATAATCCATGGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTGGATGAAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp AAACTCCATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTAAGCAGGAGGGAAGGTaGATCAGGGAAGGATGCGCC +
Preference number: 5 (lower is better)
Translates to: KLHPLTMAQGGFSVEEPCKQEGR*IREGCA
Trigger: GGCGCATCCTTCCCTGATCAACCTTCCCTCCTGCTT...ACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATGGAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACTGGAATCCATCCTGGTaGATGTCACCGATGCTGGCT +
Preference number: 5 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHWNPSW*MSPMLA
Trigger: AGCCAGCATCGGTGACATCAACCAGGATGGATTCCA...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGAGGGGAAGAAAGCCACAGGCAGCTCAGAATCTCATCTCTGTGGTCAAGGGATGGAATCCATCCTGGTaGATGTCACCGATGCTGGCT +
Preference number: 5 (lower is better)
Translates to: GRGRKPQAAQNLISVVKGWNPSW*MSPMLA
Trigger: AGCCAGCATCGGTGACATCAACCAGGATGGATTCCA...TCCCTTGACCACAGAGATGAGATTCTGAGCTGCCTGTGGCTTTCTTCCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp AAAGCCCATTCCGGCGACCTGCTTTCTAGTTCATTGCTCTTGCGTCTGAGCACGGCTCGCATCTGCAGGTaGCTGTCGCACTTGTTGTCT +
Preference number: 5 (lower is better)
Translates to: KAHSGDLLSSSLLLRLSTARICR*LSHLLS
Trigger: AGACAACAAGTGCGACAGCAACCTGCAGATGCGAGC...CGTGCTCAGACGCAAGAGCAATGAACTAGAAAGCAGGTCGCCGGAATGGGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GAGGCGCTTTGGCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATCCTCTGGTTCCGTTaGAAGGGGTTTCCTAGCTCA +
Preference number: 5 (lower is better)
Translates to: EALWLGFGTDRDLDTAPSILWFR*KGFPSS
Trigger: TGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGAT...GGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGCCAAAGCGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp AAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGGTAAGGTTGAGAGGGTaGACAAGGTTTCCAGACGGC +
Preference number: 5 (lower is better)
Translates to: KSLLFILPMSAAPGPCSLVRLRG*TRFPDG
Trigger: GCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTAC...CAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTAAAGGAGGTAGCGCTGTaGTCGCTCAGTCTGCCGATG +
Preference number: 5 (lower is better)
Translates to: LCSFGLRFLPALSVATILKEVAL*SLSLPM
Trigger: CATCGGCAGACTGAGCGACAACAGCGCTACCTCCTT...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp TGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTTGGAATCCATCCTGGTaGATGTCACCGATGCTGGCT +
Preference number: 5 (lower is better)
Translates to: WIRSLSSSSYQCLLRQDPWNPSW*MSPMLA
Trigger: AGCCAGCATCGGTGACATCAACCAGGATGGATTCCA...AGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CAGGCTGAGGTGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGCAGGGCCAGGAACCATaGCTATGGATGGTGATCTCC +
Preference number: 5 (lower is better)
Translates to: QAEVVRMDQKSLLFILPMQGQEP*LWMVIS
Trigger: GGAGATCACCATCCATAGCAATGGTTCCTGGCCCTG...CATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCACCTCAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp ACCTTTTCCTCCTGTCTCCCAGTAGAGGCGCTTTGGCTTGGTTTTGGCACAGACGTAAGGTTGAGAGGGTaGACAAGGTTTCCAGACGGC +
Preference number: 5 (lower is better)
Translates to: TFSSCLPVEALWLGFGTDVRLRG*TRFPDG
Trigger: GCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTAC...GTCTGTGCCAAAACCAAGCCAAAGCGCCTCTACTGGGAGACAGGAGGAAAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTCATCCTACCAATGTCTGCTGCGCCAGGACCCTGCTCTCTGAAGGATGCCGCTCAGAGAGAGTAAGGTaGAGAGGGTTGACAAGGTTT +
Preference number: 5 (lower is better)
Translates to: LHPTNVCCARTLLSEGCRSERVR*RGLTRF
Trigger: AAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGA...GCGGCATCCTTCAGAGAGCAGGGTCCTGGCGCAGCAGACATTGGTAGGATGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGGCTTTCACGGTCACATaGGTAATGTTGGAGGTGTCT +
Preference number: 5 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKEAFTVT*VMLEVS
Trigger: AGACACCTCCAACATTACCAATGTGACCGTGAAAGC...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 90 bp TTTTCTCTGAAATGTCCATCCGTTCACAGTCGTCCTTGTGGGCCGTaGGGGGACACAGGTACACAGCACCAGTCCGGTTGGTATAGTCAT +
Preference number: 5 (lower is better)
Translates to: FSLKCPSVHSRPCGP*GDTGTQHQSGWYSH
Trigger: ATGACTATACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS TCA 90 bp TCACTGTGCCACCAAAGAAGCTCTGCAACCGATGATTCATTAAGCTaGGCGAGGCCTGGAGGGTGTAGTCCACCTGCAAAGTCAGGAGTA +
Preference number: 5 (lower is better)
Translates to: SLCHQRSSATDDSLS*ARPGGCSPPAKSGV
Trigger: TACTCCTGACTTTGCAGGTGGACTACACCCTCCAGGCCTCGCTCAGCTTAATGAATCATCGGTTGCAGAGCTTCTTTGGTGGCACAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGTCTCTCTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACCTGTTACACATCTCGTaGTGGTATGTCTGCCAGTCA +
Preference number: 5 (lower is better)
Translates to: GLSLFLRAAFLASSLCSHLLHIS*WYVCQS
Trigger: TGACTGGCAGACATACCACAACGAGATGTGTAACAG...GTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAGAGAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp ACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGATTCCAATCCTCTGGTTCCGTTaGAAGGGGTTTCCTAGCTCA +
Preference number: 5 (lower is better)
Translates to: TVQGLCWAQHCKVLKEIPILWFR*KGFPSS
Trigger: TGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGAT...TGGAATCTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTACAGGGCCAGGAACCATaGCTATGGATGGTGATCTCC +
Preference number: 5 (lower is better)
Translates to: LCSFGLRFLPALSVATILQGQEP*LWMVIS
Trigger: GGAGATCACCATCCATAGCAATGGTTCCTGGCCCTG...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp AGCCCATATACAAAGAAGGCACAGGATCGGGGAAGTTGTTATAGTACCGTGGGGGTAAGGTTGAGAGGGTaGACAAGGTTTCCAGACGGC +
Preference number: 5 (lower is better)
Translates to: SPYTKKAQDRGSCYSTVGVRLRG*TRFPDG
Trigger: GCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTAC...CCCCACGGTACTATAACAACTTCCCCGATCCTGTGCCTTCTTTGTATATGGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTGCCATGCTACATTCAAGTATCACACCCCACGTGGTCTCGTGGGGATCTCCAGGAGAACCATGTGGTCTaGTTCTCCATGTTGATGGTA +
Preference number: 5 (lower is better)
Translates to: LPCYIQVSHPTWSRGDLQENHVV*FSMLMV
Trigger: TACCATCAACATGGAGAACAAGACCACATGGTTCTC...CTGGAGATCCCCACGAGACCACGTGGGGTGTGATACTTGAATGTAGCATGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 90 bp GTCAAAGTCTTTGTAGTCCTCAATGAAGGTGCTGTTCCACACCCGTaGTTTCACGGTCACATTGGTAATGTTGGAGGTGTCTGGAAGGGG +
Preference number: 5 (lower is better)
Translates to: VKVFVVLNEGAVPHP*FHGHIGNVGGVWKG
Trigger: CCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGCACCTTCATTGAGGACTACAAAGACTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CATCCATTGACAATGGCTCAAGGGGGATTCAGTGTGGAGGAGCCGTGTCCCCACGGTGAATTGGTCACATaGATGCTCAAAAACAGTTTC +
Preference number: 5 (lower is better)
Translates to: HPLTMAQGGFSVEEPCPHGELVT*MLKNSF
Trigger: GAAACTGTTTTTGAGCATCAATGTGACCAATTCACC...GTGGGGACACGGCTCCTCCACACTGAATCCCCCTTGAGCCATTGTCAATGGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GTGTCCACTGTGCAAGGGCTGTGCTGGGCTCAGCATTGCAAGGTCTTGAAGGAGGGTGAATTGGTCACATaGATGCTCAAAAACAGTTTC +
Preference number: 5 (lower is better)
Translates to: VSTVQGLCWAQHCKVLKEGELVT*MLKNSF
Trigger: GAAACTGTTTTTGAGCATCAATGTGACCAATTCACC...CTCCTTCAAGACCTTGCAATGCTGAGCCCAGCACAGCCCTTGCACAGTGGACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTATGGCTGCTCGGTGAATaGGTCACATTGATGCTCAAA +
Preference number: 5 (lower is better)
Translates to: LCSFGLRFLPALSVATILWLLGE*VTLMLK
Trigger: TTTGAGCATCAATGTGACCAATTCACCGAGCAGCCA...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CACTGCATGGTACTTGGGCATAATCCGGTAGTAGCGGGTCGGCTTAAAGAAGTCTCAGAGAGAGTAAGGTaGAGAGGGTTGACAAGGTTT +
Preference number: 5 (lower is better)
Translates to: HCMVLGHNPVVAGRLKEVSERVR*RGLTRF
Trigger: AAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGA...GACTTCTTTAAGCCGACCCGCTACTACCGGATTATGCCCAAGTACCATGCAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS-3UTR CAA 90 bp TGGTCAGGATGGATCAGAAGTCTCTCCTCTTCATCCTACCAATGTCTGCTGCGCGAGAACCATGTGGTCTaGTTCTCCATGTTGATGGTA +
Preference number: 5 (lower is better)
Translates to: WSGWIRSLSSSSYQCLLRENHVV*FSMLMV
Trigger: TACCATCAACATGGAGAACAAGACCACATGGTTCTC...GCGCAGCAGACATTGGTAGGATGAAGAGGAGAGACTTCTGATCCATCCTGACCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCATGGCTGCTCGGTGAATaGGTCACATTGATGCTCAAA +
Preference number: 5 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISWLLGE*VTLMLK
Trigger: TTTGAGCATCAATGTGACCAATTCACCGAGCAGCCA...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTATCAGAGAGAGTAAGGTaGAGAGGGTTGACAAGGTTT +
Preference number: 5 (lower is better)
Translates to: LCSFGLRFLPALSVATILSERVR*RGLTRF
Trigger: AAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGA...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCAGCGGGCACGGCCATaGGAGCAGGTCAACACAGTC +
Preference number: 5 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDQRARP*EQVNTV
Trigger: GACTGTGTTGACCTGCTCCAATGGCCGTGCCCGCTG...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GCTTGGTTTTGGCACAGACAGAGACTTGGATACGGCACCCTCCATGATATATCAGCTTTCACGGTCACATaGGTAATGTTGGAGGTGTCT +
Preference number: 5 (lower is better)
Translates to: AWFWHRQRLGYGTLHDISAFTVT*VMLEVS
Trigger: AGACACCTCCAACATTACCAATGTGACCGTGAAAGC...TGATATATCATGGAGGGTGCCGTATCCAAGTCTCTGTCTGTGCCAAAACCAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp CTTTGTTCCTTCGGGCTGCGTTTCTTGCCAGCTCTCTCTGTAGCCACGATTTTAGAGAACCATGTGGTCTaGTTCTCCATGTTGATGGTA +
Preference number: 5 (lower is better)
Translates to: LCSFGLRFLPALSVATILENHVV*FSMLMV
Trigger: TACCATCAACATGGAGAACAAGACCACATGGTTCTC...TAAAATCGTGGCTACAGAGAGAGCTGGCAAGAAACGCAGCCCGAAGGAACAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATCTGTTACACATCTCGTaGTGGTATGTCTGCCAGTCA +
Preference number: 5 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDLLHIS*WYVCQS
Trigger: TGACTGGCAGACATACCACAACGAGATGTGTAACAG...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS-3UTR CAA 90 bp GGGAACAGTTTATTTATTTTAGTGAGAAGCCCATATACAAAGAAGGCACAGGATGGTGAATTGGTCACATaGATGCTCAAAAACAGTTTC +
Preference number: 5 (lower is better)
Translates to: GNSLFILVRSPYTKKAQDGELVT*MLKNSF
Trigger: GAAACTGTTTTTGAGCATCAATGTGACCAATTCACC...ATCCTGTGCCTTCTTTGTATATGGGCTTCTCACTAAAATAAATAAACTGTTCCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 90 bp CCGGGGTTCACCGCCTCCTTCACCACCAGGAATCGGGTGTCCAGGTaGAAGGCGAAGGCGACCCGGCCGCAAGCCGCCACCATCAAGGCC +
Preference number: 6 (lower is better)
Translates to: PGFTASFTTRNRVSR*KAKATRPQAATIKA
Trigger: GGCCTTGATGGTGGCGGCTTGCGGCCGGGTCGCCTTCGCCTTCAACCTGGACACCCGATTCCTGGTGGTGAAGGAGGCGGTGAACCCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS CAA 90 bp CACAGCGAGGTCCCGGGGAGCCCCGGCCAGAAGGAGGTAGCGCTGTaGTCGCTCAGTCTGCCGATGGAGGGCGACCGAGTAGCCGAAGAG +
Preference number: 6 (lower is better)
Translates to: HSEVPGSPGQKEVAL*SLSLPMEGDRVAEE
Trigger: CTCTTCGGCTACTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACAGCGCTACCTCCTTCTGGCCGGGGCTCCCCGGGACCTCGCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS GCA 72 bp ACAGGCGGGGAACTCTGGTCTCCCCCTGGATCCAGTTaGCGCCGGCGGCGCTGTGGCGACAGTGGTGTGACT +
Preference number: 6 (lower is better)
Translates to: TGGELWSPPGSS*RRRRCGDSGVT
Trigger: AGTCACACCACTGTCGCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGACCAGAGTTCCCCGCCTGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp ACCGCCTCCTTCACCACCAGGAATCGGGTGTCCAGGTaGAAGGCGAAGGCGACCCGGCCGCAAGCCGCCACC +
Preference number: 6 (lower is better)
Translates to: TASFTTRNRVSR*KAKATRPQAAT
Trigger: GGTGGCGGCTTGCGGCCGGGTCGCCTTCGCCTTCAACCTGGACACCCGATTCCTGGTGGTGAAGGAGGCGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS CAA 72 bp GTCCCGGGGAGCCCCGGCCAGAAGGAGGTAGCGCTGTaGTCGCTCAGTCTGCCGATGGAGGGCGACCGAGTA +
Preference number: 6 (lower is better)
Translates to: VPGSPGQKEVAL*SLSLPMEGDRV
Trigger: TACTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACAGCGCTACCTCCTTCTGGCCGGGGCTCCCCGGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000120375.8
CDS TCA 72 bp AGGCACCAGGGGCACCGAAGTATACGGTGTTCTGGGTaGAGCCGCCGCTGGTGCCCAGCTGGCACATGCCGG +
Preference number: 6 (lower is better)
Translates to: RHQGHRSIRCSG*SRRWCPAGTCR
Trigger: CCGGCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAGAACACCGTATACTTCGGTGCCCCTGGTGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CCA 72 bp GTCTCCCCCTGGATCCAGTTGCCGCCGGCGGCGCTGTaGCGACAGTGGTGTGACTCCAGGGTCAGAGAGAGT +
Preference number: 6 (lower is better)
Translates to: VSPWIQLPPAAL*RQWCDSRVRES
Trigger: ACTCTCTCTGACCCTGGAGTCACACCACTGTCGCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GGAGCCCCGGCCAGAAGGCTGGAAAAGGAAGGCGGGTaGGTCAGCCTGGCTTTGCAAGCCTCCCTCCAGTCA +
Preference number: 6 (lower is better)
Translates to: GAPARRLEKEGG*VSLALQASLQS
Trigger: TGACTGGAGGGAGGCTTGCAAAGCCAGGCTGACCCACCCGCCTTCCTTTTCCAGCCTTCTGGCCGGGGCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS CCA 72 bp GGGTCCAACACAGCTGGCCTGGCCACCAAGGTCCTATaGAGGATATTGATGACAGGCCGGGCCCGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: GSNTAGLATKVL*RILMTGRARSS
Trigger: GCTGCTGCGGGCCCGGCCTGTCATCAATATCCTCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 72 bp CGGAGGACAGTAGCAGGGCGGATGGCACCTCTAGGGTaGGCAATGCCTCATGCGCATCTTCCCCAGCCCGTT +
Preference number: 6 (lower is better)
Translates to: RRTVAGRMAPLG*AMPHAHLPQPV
Trigger: AACGGGCTGGGGAAGATGCGCATGAGGCATTGCTCACCCTAGAGGTGCCATCCGCCCTGCTACTGTCCTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp CTTGGTGTACCGATGGGCACAGACCAGGACTCTACCTaGAGGGCCCTGGCTGGCCACAGTCACTCCAAGCCA +
Preference number: 6 (lower is better)
Translates to: LGVPMGTDQDST*RALAGHSHSKP
Trigger: TGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTCTGTGCCCATCGGTACACCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS GCA 72 bp GGCTGCAGCTGCTCAGACAGGAAGGCTGCTCGCATCTaGAGGTTGCTGTCGCACTTGTTGTCTGGCCCGCAC +
Preference number: 6 (lower is better)
Translates to: GCSCSDRKAARI*RLLSHLLSGPH
Trigger: GTGCGGGCCAGACAACAAGTGCGACAGCAACCTGCAGATGCGAGCAGCCTTCCTGTCTGAGCAGCTGCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp ACAGCTGGCCTGGCCACCAAGGTCCTATGGAGGATATaGATGACAGGCCGGGCCCGCAGCAGCACGATGTGG +
Preference number: 6 (lower is better)
Translates to: TAGLATKVLWRI*MTGRARSSTMW
Trigger: CCACATCGTGCTGCTGCGGGCCCGGCCTGTCATCAATATCCTCCATAGGACCTTGGTGGCCAGGCCAGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp GGGCAATGGCACTGCCAAAATAAGCGCCCACCTGCGTaGCCTTCAGCACCTGCTTCCTCTGCAGGTCTCCAC +
Preference number: 6 (lower is better)
Translates to: GQWHCQNKRPPA*PSAPASSAGLH
Trigger: GTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCCATTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp TGCGCCGCTGGTCTTCTAGCCCAGACCACAGCACCTTaGTGTACCGATGGGCACAGACCAGGACTCTACCTG +
Preference number: 6 (lower is better)
Translates to: CAAGLLAQTTAP*CTDGHRPGLYL
Trigger: CAGGTAGAGTCCTGGTCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS TCA 72 bp ACGGCTGGCAGGGCCAGGAACCATTGCTATGGATGGTaGTCTCCGTGGGGTACAGCAGCCACTTGCCATTGG +
Preference number: 6 (lower is better)
Translates to: TAGRARNHCYGW*SPWGTAATCHW
Trigger: CCAATGGCAAGTGGCTGCTGTACCCCACGGAGATCACCATCCATAGCAATGGTTCCTGGCCCTGCCAGCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp GTAGGTCATTGCCACGCACATAGCACTTGCCCACCATaGGCCGCTGGTCTTCTAGCCCAGACCACAGCACCT +
Preference number: 6 (lower is better)
Translates to: VGHCHAHSTCPP*AAGLLAQTTAP
Trigger: AGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTGGCAATGACCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CCA 72 bp CCTGCCACCCATCATTGTTCAGGTCTGCCAGGGCAATaGCACTGCCAAAATAAGCGCCCACCTGCGTGCCCT +
Preference number: 6 (lower is better)
Translates to: PATHHCSGLPGQ*HCQNKRPPACP
Trigger: AGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp CCACATCCATCTTCCCGCTCAGGGAGTAGCCGAAGGTaGCCAAGCCTGGCAGTCCGAGTTTCTCTCCATGGA +
Preference number: 6 (lower is better)
Translates to: PHPSSRSGSSRR*PSLAVRVSLHG
Trigger: TCCATGGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp ATGCGCCGCTGGTCTTCTAGCCCAGACCACAGCACCTaGGTGTACCGATGGGCACAGACCAGGACTCTACCT +
Preference number: 6 (lower is better)
Translates to: MRRWSSSPDHST*VYRWAQTRTLP
Trigger: AGGTAGAGTCCTGGTCTGTGCCCATCGGTACACCAAGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CAA 90 bp CGCTGTGGCGACAGTGGTGTGACTCCAGGGTCAGAGAGAGTAAGGTaGAGAGGGTTGACAAGGTTTCCAGACGGCTGGCAGGGCCAGGAA +
Preference number: 6 (lower is better)
Translates to: RCGDSGVTPGSERVR*RGLTRFPDGWQGQE
Trigger: TTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGACCCTGGAGTCACACCACTGTCGCCACAGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 90 bp AGAGGGTTGACAAGGTTTCCAGACGGCTGGCAGGGCCAGGAACCATaGCTATGGATGGTGATCTCCGTGGGGTACAGCAGCCACTTGCCA +
Preference number: 6 (lower is better)
Translates to: RGLTRFPDGWQGQEP*LWMVISVGYSSHLP
Trigger: TGGCAAGTGGCTGCTGTACCCCACGGAGATCACCATCCATAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 90 bp AAGGTGCTGTTCCACACCCGTGCTTTCACGGTCACATTGGTAATGTaGGAGGTGTCTGGAAGGGGGCACTCCAGCCACACACAGCGGGCA +
Preference number: 6 (lower is better)
Translates to: KVLFHTRAFTVTLVM*EVSGRGHSSHTQRA
Trigger: TGCCCGCTGTGTGTGGCTGGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGCACCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 72 bp AAATGTCCATCCGTTCACAGTCGTCCTTGTGGGCCGTaGGGGGACACAGGTACACAGCACCAGTCCGGTTGG +
Preference number: 6 (lower is better)
Translates to: KCPSVHSRPCGP*GDTGTQHQSGW
Trigger: CCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS GCA 72 bp CACCAGGAGGTCCTGCCACCCATCATTGTTCAGGTCTaGCAGGGCAATGGCACTGCCAAAATAAGCGCCCAC +
Preference number: 6 (lower is better)
Translates to: HQEVLPPIIVQV*QGNGTAKISAH
Trigger: GTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGACCTCCTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp TCTCTGCTGTACTGGAGCCTGCTTAGAGGCTGCAGCTaGTCAGACAGGAAGGCTGCTCGCATCTGCAGGTTG +
Preference number: 6 (lower is better)
Translates to: SLLYWSLLRGCS*SDRKAARICRL
Trigger: CAACCTGCAGATGCGAGCAGCCTTCCTGTCTGAGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp CTTCAGCAAGAAGACAGCGCCCATATGTTGGTGCCGTaGGGCACCCGTCACAACAGTGATGATGTCCGTGGG +
Preference number: 6 (lower is better)
Translates to: LQQEDSAHMLVP*GTRHNSDDVRG
Trigger: CCCACGGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp CTTCCCGCTCAGGGAGTAGCCGAAGGTGGCCAAGCCTaGCAGTCCGAGTTTCTCTCCATGGATTATCTGCTG +
Preference number: 6 (lower is better)
Translates to: LPAQGVAEGGQA*QSEFLSMDYLL
Trigger: CAGCAGATAATCCATGGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GTCCTGGTGACTCGACGTGGACAGCTGAAGAAGTACTaGGAGGTCCCTCGTGTGCAACGTTACCCCGATGAC +
Preference number: 6 (lower is better)
Translates to: VLVTRRGQLKKY*EVPRVQRYPDD
Trigger: GTCATCGGGGTAACGTTGCACACGAGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GGAGTACGGGCTGCAAGTTGTCCTGGTGACTCGACGTaGACAGCTGAAGAAGTACTGGGAGGTCCCTCGTGT +
Preference number: 6 (lower is better)
Translates to: GVRAASCPGDST*TAEEVLGGPSC
Trigger: ACACGAGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGACAACTTGCAGCCCGTACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp TTTCCAGACGGCTGGCAGGGCCAGGAACCATTGCTATaGATGGTGATCTCCGTGGGGTACAGCAGCCACTTG +
Preference number: 6 (lower is better)
Translates to: FPDGWQGQEPLL*MVISVGYSSHL
Trigger: CAAGTGGCTGCTGTACCCCACGGAGATCACCATCCATAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp TGCTTTCACGGTCACATTGGTAATGTTGGAGGTGTCTaGAAGGGGGCACTCCAGCCACACACAGCGGGCACG +
Preference number: 6 (lower is better)
Translates to: CFHGHIGNVGGV*KGALQPHTAGT
Trigger: CGTGCCCGCTGTGTGTGGCTGGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 90 bp CCCTCAAATGGGGCTCCCACAGCGATGTCCTGGAATCCATCCTGGTaGATGTCACCGATGCTGGCTATAGAGATGCCAAAGGCAGAGCGG +
Preference number: 6 (lower is better)
Translates to: PSNGAPTAMSWNPSW*MSPMLAIEMPKAER
Trigger: CCGCTCTGCCTTTGGCATCTCTATAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 72 bp GCCCTTCAGCACCTGCTTCCTCTGCAGGTCTCCACCTaGCTCTTGCTTCAGCAAGAAGACAGCGCCCATATG +
Preference number: 6 (lower is better)
Translates to: ALQHLLPLQVST*LLLQQEDSAHM
Trigger: CATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 72 bp AAGGTTGATCAGGGAAGGATGCGCCCGCCTGGTTCATaGAGACATAGACGGCACCCCCTACCTCCTCTTTCC +
Preference number: 6 (lower is better)
Translates to: KVDQGRMRPPGS*RHRRHPLPPLS
Trigger: GGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCGCATCCTTCCCTGATCAACCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp TTAGTGTCTCTGCTGTACTGGAGCCTGCTTAGAGGCTaGAGCTGCTCAGACAGGAAGGCTGCTCGCATCTGC +
Preference number: 6 (lower is better)
Translates to: LVSLLYWSLLRG*SCSDRKAARIC
Trigger: GCAGATGCGAGCAGCCTTCCTGTCTGAGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACACTAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp TCTGTCTCTGACGGCTGGCTCTTCATCTCAGCCTTCTaGCTCTTAGCTTCATACAGGGCACGAGTGCGGGCT +
Preference number: 6 (lower is better)
Translates to: SVSDGWLFISAF*LLASYRARVRA
Trigger: AGCCCGCACTCGTGCCCTGTATGAAGCTAAGAGGCAGAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS GCA 72 bp GTCAGCCTGGCTTTGCAAGCCTCCCTCCAGTCAGCCTaGAAATCCACACTCTCTGAACATGGGCTCCATACC +
Preference number: 6 (lower is better)
Translates to: VSLALQASLQSA*KSTLSEHGLHT
Trigger: GGTATGGAGCCCATGTTCAGAGAGTGTGGATTTGCAGGCTGACTGGAGGGAGGCTTGCAAAGCCAGGCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS CCA 72 bp AGTGTGATTCTCCATAGCCTGTGCCTGGTTGAGGACTaGGTAGGCATCCAGAGACCGCAAGCCGAGCTTGAG +
Preference number: 6 (lower is better)
Translates to: SVILHSLCLVED*VGIQRPQAELE
Trigger: CTCAAGCTCGGCTTGCGGTCTCTGGATGCCTACCCAGTCCTCAACCAGGCACAGGCTATGGAGAATCACACT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp GTGACTCCAGGGTCAGAGAGAGTAAGGTTGAGAGGGTaGACAAGGTTTCCAGACGGCTGGCAGGGCCAGGAA +
Preference number: 6 (lower is better)
Translates to: VTPGSERVRLRG*TRFPDGWQGQE
Trigger: TTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGACCCTGGAGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 90 bp TCAGGGTCACTTTTCTCTGAAATGTCCATCCGTTCACAGTCGTCCTaGTGGGCCGTGAGGGGACACAGGTACACAGCACCAGTCCGGTTG +
Preference number: 6 (lower is better)
Translates to: SGSLFSEMSIRSQSS*WAVRGHRYTAPVRL
Trigger: CAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAAGTGACCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CAA 90 bp GACAGTGGTGTGACTCCAGGGTCAGAGAGAGTAAGGTTGAGAGGGTaGACAAGGTTTCCAGACGGCTGGCAGGGCCAGGAACCATTGCTA +
Preference number: 6 (lower is better)
Translates to: DSGVTPGSERVRLRG*TRFPDGWQGQEPLL
Trigger: TAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGACCCTGGAGTCACACCACTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp TCTTGCTTCAGCAAGAAGACAGCGCCCATATGTTGGTaGCGTGGGGCACCCGTCACAACAGTGATGATGTCC +
Preference number: 6 (lower is better)
Translates to: SCFSKKTAPICW*RGAPVTTVMMS
Trigger: GGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp AGCACCTGCTTCCTCTGCAGGTCTCCACCTGACTCTTaGTTCAGCAAGAAGACAGCGCCCATATGTTGGTGC +
Preference number: 6 (lower is better)
Translates to: STCFLCRSPPDS*FSKKTAPICWC
Trigger: GCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp TTCTCTGAAATGTCCATCCGTTCACAGTCGTCCTTGTaGGCCGTGAGGGGACACAGGTACACAGCACCAGTC +
Preference number: 6 (lower is better)
Translates to: FSEMSIRSQSSL*AVRGHRYTAPV
Trigger: GACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CCA 72 bp GACTCTTGCTTCAGCAAGAAGACAGCGCCCATATGTTaGTGCCGTGGGGCACCCGTCACAACAGTGATGATG +
Preference number: 6 (lower is better)
Translates to: DSCFSKKTAPIC*CRGAPVTTVMM
Trigger: CATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GCTGTGGTAGATGTAGACTTTGCCCAAGCCCTCAAATaGGGCTCCCACAGCGATGTCCTGGAATCCATCCTG +
Preference number: 6 (lower is better)
Translates to: AVVDVDFAQALK*GSHSDVLESIL
Trigger: CAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACCACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GGAGGTAGCTGTACAAAGCGCAGGGTCCAACACAGCTaGCCTGGCCACCAAGGTCCTATGGAGGATATTGAT +
Preference number: 6 (lower is better)
Translates to: GGSCTKRRVQHS*PGHQGPMEDID
Trigger: ATCAATATCCTCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCCTGCGCTTTGTACAGCTACCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp GGGGCTCCCACAGCGATGTCCTGGAATCCATCCTGGTaGATGTCACCGATGCTGGCTATAGAGATGCCAAAG +
Preference number: 6 (lower is better)
Translates to: GAPTAMSWNPSW*MSPMLAIEMPK
Trigger: CTTTGGCATCTCTATAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp GACAGTGGTGTGACTCCAGGGTCAGAGAGAGTAAGGTaGAGAGGGTTGACAAGGTTTCCAGACGGCTGGCAG +
Preference number: 6 (lower is better)
Translates to: DSGVTPGSERVR*RGLTRFPDGWQ
Trigger: CTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGACCCTGGAGTCACACCACTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp AAGGTGCTGTTCCACACCCGTGCTTTCACGGTCACATaGGTAATGTTGGAGGTGTCTGGAAGGGGGCACTCC +
Preference number: 6 (lower is better)
Translates to: KVLFHTRAFTVT*VMLEVSGRGHS
Trigger: GGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGCACCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp CTCTTAGCTTCATACAGGGCACGAGTGCGGGCTCGCTaGAAGAAGCCGCACTTCCACAAGAGGAGGATGATG +
Preference number: 6 (lower is better)
Translates to: LLASYRARVRAR*KKPHFHKRRMM
Trigger: CATCATCCTCCTCTTGTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTCGTGCCCTGTATGAAGCTAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
CDS CAA 90 bp TCCTCAATGAAGGTGCTGTTCCACACCCGTGCTTTCACGGTCACATaGGTAATGTTGGAGGTGTCTGGAAGGGGGCACTCCAGCCACACA +
Preference number: 6 (lower is better)
Translates to: SSMKVLFHTRAFTVT*VMLEVSGRGHSSHT
Trigger: TGTGTGGCTGGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGCACCTTCATTGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp AATGGGGCTCCCACAGCGATGTCCTGGAATCCATCCTaGTTGATGTCACCGATGCTGGCTATAGAGATGCCA +
Preference number: 6 (lower is better)
Translates to: NGAPTAMSWNPS*LMSPMLAIEMP
Trigger: TGGCATCTCTATAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GTGAGCAATGCCTCATGCGCATCTTCCCCAGCCCGTTaGCTGCTCGGTGAATTGGTCACATTGATGCTCAAA +
Preference number: 6 (lower is better)
Translates to: VSNASCASSPAR*LLGELVTLMLK
Trigger: TTTGAGCATCAATGTGACCAATTCACCGAGCAGCCAACGGGCTGGGGAAGATGCGCATGAGGCATTGCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CCA 72 bp GTAAGGTTGAGAGGGTTGACAAGGTTTCCAGACGGCTaGCAGGGCCAGGAACCATTGCTATGGATGGTGATC +
Preference number: 6 (lower is better)
Translates to: VRLRGLTRFPDG*QGQEPLLWMVI
Trigger: GATCACCATCCATAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp CTTTTCTCTGAAATGTCCATCCGTTCACAGTCGTCCTaGTGGGCCGTGAGGGGACACAGGTACACAGCACCA +
Preference number: 6 (lower is better)
Translates to: LFSEMSIRSQSS*WAVRGHRYTAP
Trigger: TGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS TCA 72 bp AGCCTCCCTCCAGTCAGCCTGCAAATCCACACTCTCTaGACATGGGCTCCATACCAATGTCTGGAGATAGGA +
Preference number: 6 (lower is better)
Translates to: SLPPVSLQIHTL*TWAPYQCLEIG
Trigger: TCCTATCTCCAGACATTGGTATGGAGCCCATGTTCAGAGAGTGTGGATTTGCAGGCTGACTGGAGGGAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107739.8
CDS GCA 72 bp CCAGCTGGCACATGCCGGTCTGCAAGTAGTCAGTGTTaGTGTTACACATCTCGTTGTGGTATGTCTGCCAGT +
Preference number: 6 (lower is better)
Translates to: PAGTCRSASSQC*CYTSRCGMSAS
Trigger: ACTGGCAGACATACCACAACGAGATGTGTAACAGCAACACTGACTACTTGCAGACCGGCATGTGCCAGCTGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
ENSMUST00000145671.2
CDS CAA 72 bp TCAAAGGCAATGAGCAGCTCCATCCTCTGGTTCCGTTaGAAGGGGTTTCCTAGCTCACACAGGATGGTCTCG +
Preference number: 6 (lower is better)
Translates to: SKAMSSSILWFR*KGFPSSHRMVS
Trigger: CGAGACCATCCTGTGTGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGATGGAGCTGCTCATTGCCTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp CCTCCGCAGTTTTCATGGCAGCCTCACCCATCACTGTaGCACCAAAGAAGCTCTGCAACCGATGATTCATTA +
Preference number: 6 (lower is better)
Translates to: PPQFSWQPHPSL*HQRSSATDDSL
Trigger: TAATGAATCATCGGTTGCAGAGCTTCTTTGGTGGCACAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS TCA 72 bp CTCATGCGCATCTTCCCCAGCCCGTTGGCTGCTCGGTaGATTGGTCACATTGATGCTCAAAAACAGTTTCTT +
Preference number: 6 (lower is better)
Translates to: LMRIFPSPLAAR*IGHIDAQKQFL
Trigger: AAGAAACTGTTTTTGAGCATCAATGTGACCAATTCACCGAGCAGCCAACGGGCTGGGGAAGATGCGCATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS CAA 72 bp TCCCCAGCCCGTTGGCTGCTCGGTGAATTGGTCACATaGATGCTCAAAAACAGTTTCTTAGTGTCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: SPARWLLGELVT*MLKNSFLVSLL
Trigger: CAGCAGAGACACTAAGAAACTGTTTTTGAGCATCAATGTGACCAATTCACCGAGCAGCCAACGGGCTGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8
CDS GCA 72 bp TTTGTAGTCCTCAATGAAGGTGCTGTTCCACACCCGTaGTTTCACGGTCACATTGGTAATGTTGGAGGTGTC +
Preference number: 6 (lower is better)
Translates to: FVVLNEGAVPHP*FHGHIGNVGGV
Trigger: GACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGCACCTTCATTGAGGACTACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001548.14
ENSMUST00000107739.8
ENSMUST00000120375.8