RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ITGA10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090210

Ensembl transcript IDs: ENSMUST00000029744.6, ENSMUST00000119365.8

Found 326 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCTGGGGGCAGCTGGGTTTCCCTAGCACCTGAGGGCGGAGTACTGTaGAGTCTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGA +
Preference number: 1 (lower is better)
Translates to: PGGSWVSLAPEGGVL*SLRFQPAGSCRSEG
Trigger: TCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAGACTTCACAGTACTCCGCCCTCAGGTGCTAGGGAAACCCAGCTGCCCCCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 90 bp AACCACTTGGGGGCCTCTGGCTCCGGAAATTTTAGCATCAAGTCCTaGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCC +
Preference number: 1 (lower is better)
Translates to: NHLGASGSGNFSIKS*PCSQRRMRVGMPQP
Trigger: GGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCCAGAGGCCCCCAAGTGGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR TCA 90 bp ACCTGTGCTAGCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTaGGGATATTATGTGTTTTGGTGCCAGCCCTTCTCAGCTAAGGCA +
Preference number: 1 (lower is better)
Translates to: TCASCGSRREGGRTG*GYYVFWCQPFSAKA
Trigger: TGCCTTAGCTGAGAAGGGCTGGCACCAAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGCTAGCACAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 90 bp CCCGCTTGTTTGGATCTATCTCAGGGGGCTGTTGTTACCCAAACCTaGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGT +
Preference number: 1 (lower is better)
Translates to: PACLDLSQGAVVTQT*CGERASSCHREAFS
Trigger: ACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTTGGGTAACAACAGCCCCCTGAGATAGATCCAAACAAGCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 90 bp GCTTGTTTGGATCTATCTCAGGGGGCTGTTGTTACCCAAACCTGGTaGGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTAC +
Preference number: 1 (lower is better)
Translates to: ACLDLSQGAVVTQTW*GERASSCHREAFSY
Trigger: GTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTTGGGTAACAACAGCCCCCTGAGATAGATCCAAACAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 90 bp TTCTCAGCTAAGGCAAAGCTTCATCTCTTGCCAGAAGCATCGCCATaGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTG +
Preference number: 1 (lower is better)
Translates to: FSAKAKLHLLPEASP*LKSQVRLQAWRHML
Trigger: CAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCATGGCGATGCTTCTGGCAAGAGATGAAGCTTTGCCTTAGCTGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 90 bp GCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTaGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGG +
Preference number: 1 (lower is better)
Translates to: ASRLRTAWEDRFSGC*STAQSDFLSSQSKR
Trigger: CCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR TCA 90 bp AGTACTGTGAAGTCTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTaGAGGATTCTCTGTGCCCTGGAATTGTACAGAATGTCTCTTGTG +
Preference number: 1 (lower is better)
Translates to: STVKSQVSAGWQLPV*RILCALELYRMSLV
Trigger: CACAAGAGACATTCTGTACAATTCCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAGACTTCACAGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTaGTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAG +
Preference number: 1 (lower is better)
Translates to: IASRLRTAWEDRFSG*WSTAQSDFLSSQSK
Trigger: CTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 90 bp AAACATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTaGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTC +
Preference number: 1 (lower is better)
Translates to: KHCKQTQNSLGRPVL*LLVNCSIRFPLITV
Trigger: GACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAATGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 90 bp ACCAGAGACACCAAAATAAACATTGCAAGCAGACTCAGAACAGCCTaGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCTCAATCAGAT +
Preference number: 1 (lower is better)
Translates to: TRDTKINIASRLRTA*EDRFSGCWSTAQSD
Trigger: ATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAATGTTTATTTTGGTGTCTCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR TCA 90 bp CCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTaGCTTTTACTTCTTTTAAGCCAACGTCAGCTCTCTCCTGTGGAG +
Preference number: 1 (lower is better)
Translates to: PRSMNHRTPRESSRC*LLLLLSQRQLSPVE
Trigger: CTCCACAGGAGAGAGCTGACGTTGGCTTAAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGGAGCAGGCAGGAAGGTaGGAGAGTGTGTACGCGTGT +
Preference number: 2 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWEQAGR*ESVYAC
Trigger: ACACGCGTACACACTCTCTCACCTTCCTGCCTGCTC...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTGGGGGACGCACAGGGTaGGGATATTATGTGTTTTGG +
Preference number: 2 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPGGRTG*GYYVFW
Trigger: CCAAAACACATAATATCCTCACCCTGTGCGTCCCCC...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCGTCAGCTCTCTCCTGTaGAGTGGGGAGCAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCVSSLL*SGEQAG
Trigger: TCCTGCCTGCTCCCCACTCCACAGGAGAGAGCTGAC...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCGAGCAGGCAGGAAGGTaGGAGAGTGTGTACGCGTGT +
Preference number: 2 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCEQAGR*ESVYAC
Trigger: ACACGCGTACACACTCTCTCACCTTCCTGCCTGCTC...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTGCCAAAGTGGGCTTCTaGGCCTCCTGCAGTCAGTCA +
Preference number: 2 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASAKVGF*ASCSQS
Trigger: TGACTGACTGCAGGAGGCTCAGAAGCCCACTTTGGC...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAGGTTTCCCTAGCACCTaGGGGCGGAGTACTGTGAAG +
Preference number: 2 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSGFPST*GRSTVK
Trigger: CTTCACAGTACTCCGCCCTCAGGTGCTAGGGAAACC...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGCCTGGAGACACATGCTaGCAGCATCTTTTCCCCTTT +
Preference number: 2 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWPGDTC*QHLFPF
Trigger: AAAGGGGAAAAGATGCTGCCAGCATGTGTCTCCAGG...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTTCAGCCCGGAGAGCCTaGGGGCAGCTGGGTTTCCCT +
Preference number: 2 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPSARRA*GQLGFP
Trigger: AGGGAAACCCAGCTGCCCCCAGGCTCTCCGGGCTGA...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTGGATATTATGTGTTTTaGTGCCAGCCCTTCTCAGCT +
Preference number: 2 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPGYYVF*CQPFSA
Trigger: AGCTGAGAAGGGCTGGCACCAAAACACATAATATCC...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR GCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAATCAAGTCCTGGCCTTaGTCCCAGAGAAGGATGAGG +
Preference number: 2 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSIKSWP*SQRRMR
Trigger: CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGAT...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGGGGGGACGCACAGGGTaGGGATATTATGTGTTTTGG +
Preference number: 2 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMGGRTG*GYYVFW
Trigger: CCAAAACACATAATATCCTCACCCTGTGCGTCCCCC...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCACCTGGAGACACATGCTaGCAGCATCTTTTCCCCTTT +
Preference number: 2 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSPGDTC*QHLFPF
Trigger: AAAGGGGAAAAGATGCTGCCAGCATGTGTCTCCAGG...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTGAGAAGGATGAGGGTTaGGATGCCTCAGCCCGGAGA +
Preference number: 2 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPEKDEG*DASARR
Trigger: TCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTC...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR GCA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATGGGACAAAGGGAATCTaGAAGGAGAGTCGGGAGCAA +
Preference number: 2 (lower is better)
Translates to: LTLQTPDANHVGFLPDADGTKGI*KESREQ
Trigger: TTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCC...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR GCA 90 bp CTGGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGGTCACCAAGCTCCCCTaGTATCCCAGCTTGAACCAC +
Preference number: 2 (lower is better)
Translates to: LAAGQLLNQISSHHSLRGVTKLP*YPSLNH
Trigger: GTGGTTCAAGCTGGGATAGCAGGGGAGCTTGGTGAC...CCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp TCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTTTTCGGATACAGAGTCTCTTaGAAAGGCTGCCAAAGTGGG +
Preference number: 2 (lower is better)
Translates to: SKVKSGCRPGDTCWQHLFGYRVS*KGCQSG
Trigger: CCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCC...GAAAAGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGGGGAGCAAAATCATTTaGCTCCTGGTAATGGGGAAG +
Preference number: 2 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRGSKII*LLVMGK
Trigger: CTTCCCCATTACCAGGAGTCAAATGATTTTGCTCCC...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAGCCCCGAAGAGTAAATaGAGAAAATTGTCACCAAGC +
Preference number: 2 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSAPKSK*RKLSPS
Trigger: GCTTGGTGACAATTTTCTCCATTTACTCTTCGGGGC...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp CTGGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGACAGGAGTCTCAGAATaGTCTTCCCAGGCTATCACC +
Preference number: 2 (lower is better)
Translates to: LAAGQLLNQISSHHSLRGTGVSE*SSQAIT
Trigger: GGTGATAGCCTGGGAAGACCATTCTGAGACTCCTGT...CCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGGCCAAAGTGGGCTTCTaGGCCTCCTGCAGTCAGTCA +
Preference number: 2 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVAKVGF*ASCSQS
Trigger: TGACTGACTGCAGGAGGCTCAGAAGCCCACTTTGGC...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp TTGACTCCTGGTAATGGGGAAGATAGGGTCCAAAACAAAGAACCTGTGCTAGCTGCATCTTTTCCCCTTTaGGCCTCCAAGCCTCCTTTG +
Preference number: 2 (lower is better)
Translates to: LTPGNGEDRVQNKEPVLAASFPL*ASKPPL
Trigger: CAAAGGAGGCTTGGAGGCTCAAAGGGGAAAAGATGC...AGCTAGCACAGGTTCTTTGTTTTGGACCCTATCTTCCCCATTACCAGGAGTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR GCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGCTGAAGGATTCTCTGTaGCCTGGAATTGTACAGAAT +
Preference number: 2 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRLKDSL*PGIVQN
Trigger: ATTCTGTACAATTCCAGGGCACAGAGAATCCTTCAG...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCGAGAAGGATGAGGGTTaGGATGCCTCAGCCCGGAGA +
Preference number: 2 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIEKDEG*DASARR
Trigger: TCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTC...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR GCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACACACTGGGCAAGAAGGTaGTTACTCTCCAGACACCTG +
Preference number: 2 (lower is better)
Translates to: RKGDQERAEKLTAAETPTHWARR*LLSRHL
Trigger: CAGGTGTCTGGAGAGTAAGCACCTTCTTGCCCAGTG...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CAA 90 bp ACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTaGACTTTTACTTCTTTTAAGCCAACGTCAGCTCTCTCCTGTGGA +
Preference number: 2 (lower is better)
Translates to: TQIYESQDSTGKQQM*TFTSFKPTSALSCG
Trigger: TCCACAGGAGAGAGCTGACGTTGGCTTAAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTTGGCAGTTGCCGGTCTaGAGGATTCTCTGTGCCCTG +
Preference number: 2 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFWQLPV*RILCAL
Trigger: CAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCA...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAACAGGAGTCTCAGAATaGTCTTCCCAGGCTATCACC +
Preference number: 2 (lower is better)
Translates to: RKGDQERAEKLTAAETPTTGVSE*SSQAIT
Trigger: GGTGATAGCCTGGGAAGACCATTCTGAGACTCCTGT...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGGGATACAGAGTCTCTTaGAAAGGCTGCCAAAGTGGG +
Preference number: 2 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVGYRVS*KGCQSG
Trigger: CCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCC...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR GCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCGAAAGGGCTTCTTCCTaGCACCGTGAAGCTTTCAGT +
Preference number: 2 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIERASS*HREAFS
Trigger: ACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTC...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAACAGAATGTCTCTTGTaGCTTTTTCTCCTCCCTCCT +
Preference number: 2 (lower is better)
Translates to: RKGDQERAEKLTAAETPTTECLL*LFLLPP
Trigger: AGGAGGGAGGAGAAAAAGCCACAAGAGACATTCTGT...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGCCTTCTTTTTGGAATTaGGAGGGGGACAAAGGGAAT +
Preference number: 2 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVPSFWN*EGDKGN
Trigger: ATTCCCTTTGTCCCCCTCTCAATTCCAAAAAGAAGG...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTGGGAGCAAAATCATTTaGCTCCTGGTAATGGGGAAG +
Preference number: 2 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFGSKII*LLVMGK
Trigger: CTTCCCCATTACCAGGAGTCAAATGATTTTGCTCCC...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CAA 90 bp AGAGGGCCTCTGTCAGAGCTAAACTATGGAGATCAGAAACTGTCTTaGCTGTTCAAAAGTCTTAATTACAATAAACAACGAGTTTCCCCG +
Preference number: 2 (lower is better)
Translates to: RGPLSELNYGDQKLS*LFKSLNYNKQRVSP
Trigger: CGGGGAAACTCGTTGTTTATTGTAATTAAGACTTTTGAACAGCAAAGACAGTTTCTGATCTCCATAGTTTAGCTCTGACAGAGGCCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTGGATATTATGTGTTTTaGTGCCAGCCCTTCTCAGCT +
Preference number: 2 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFGYYVF*CQPFSA
Trigger: AGCTGAGAAGGGCTGGCACCAAAACACATAATATCC...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTGGATTCTCTGTGCCCTaGAATTGTACAGAATGTCTC +
Preference number: 2 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFGFSVP*NCTECL
Trigger: GAGACATTCTGTACAATTCCAGGGCACAGAGAATCC...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTGCCCCGAAGAGTAAATaGAGAAAATTGTCACCAAGC +
Preference number: 2 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFAPKSK*RKLSPS
Trigger: GCTTGGTGACAATTTTCTCCATTTACTCTTCGGGGC...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCGAAAGCAGCAGATGTTaGCTTTTACTTCTTTTAAGC +
Preference number: 2 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIESSRC*LLLLLS
Trigger: GCTTAAAAGAAGTAAAAGTCAACATCTGCTGCTTTC...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR TCA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGAAAGCAGCAGATGTTaGCTTTTACTTCTTTTAAGC +
Preference number: 2 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKESSRC*LLLLLS
Trigger: GCTTAAAAGAAGTAAAAGTCAACATCTGCTGCTTTC...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR TCA 72 bp AGCTGGGTTTCCCTAGCACCTGAGGGCGGAGTACTGTaGAGTCTCAGGTTTCAGCCGGCTGGCAGTTGCCGG +
Preference number: 3 (lower is better)
Translates to: SWVSLAPEGGVL*SLRFQPAGSCR
Trigger: CCGGCAACTGCCAGCCGGCTGAAACCTGAGACTTCACAGTACTCCGCCCTCAGGTGCTAGGGAAACCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR TCA 72 bp TTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATaGGGGTTGGGATGCCTCAGCCCGGAGAGCCTGGGG +
Preference number: 3 (lower is better)
Translates to: LASSPGLAPREG*GLGCLSPESLG
Trigger: CCCCAGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR TCA 72 bp AGCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTaGGGATATTATGTGTTTTGGTGCCAGCCCTTCTCA +
Preference number: 3 (lower is better)
Translates to: SCGSRREGGRTG*GYYVFWCQPFS
Trigger: TGAGAAGGGCTGGCACCAAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp GGGGCCTCTGGCTCCGGAAATTTTAGCATCAAGTCCTaGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATG +
Preference number: 3 (lower is better)
Translates to: GASGSGNFSIKS*PCSQRRMRVGM
Trigger: CATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCCAGAGGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 72 bp GATCTATCTCAGGGGGCTGTTGTTACCCAAACCTGGTaGGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCT +
Preference number: 3 (lower is better)
Translates to: DLSQGAVVTQTW*GERASSCHREA
Trigger: AGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTTGGGTAACAACAGCCCCCTGAGATAGATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 72 bp CAGAAGCATCGCCATGGCTCAAAAGTCAAGTCAGGCTaGAGGCCTGGAGACACATGCTGGCAGCATCTTTTC +
Preference number: 3 (lower is better)
Translates to: QKHRHGSKVKSG*RPGDTCWQHLF
Trigger: GAAAAGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCATGGCGATGCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 72 bp TCTGGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTaGTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAG +
Preference number: 3 (lower is better)
Translates to: SGSGNFSIKSWP*SQRRMRVGMPQ
Trigger: CTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 72 bp AGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTaGCCTGGAATTGTACAGAATGTCTCTTGTGGCTTT +
Preference number: 3 (lower is better)
Translates to: SRLAVAGLKDSL*PGIVQNVSCGF
Trigger: AAAGCCACAAGAGACATTCTGTACAATTCCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp AAGGCAAAGCTTCATCTCTTGCCAGAAGCATCGCCATaGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGA +
Preference number: 3 (lower is better)
Translates to: KAKLHLLPEASP*LKSQVRLQAWR
Trigger: TCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCATGGCGATGCTTCTGGCAAGAGATGAAGCTTTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp CAGAGACACCTACAGCACATGACAGGAGTCTCAGAATaGTCTTCCCAGGCTATCACCGCTATAGCGCCAACA +
Preference number: 3 (lower is better)
Translates to: QRHLQHMTGVSE*SSQAITAIAPT
Trigger: TGTTGGCGCTATAGCGGTGATAGCCTGGGAAGACCATTCTGAGACTCCTGTCATGTGCTGTAGGTGTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp CTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTaGTCAACTGCTCAATCAGATTTCCTCTCATCACAG +
Preference number: 3 (lower is better)
Translates to: LRTAWEDRFSGC*STAQSDFLSSQ
Trigger: CTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTaGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTC +
Preference number: 3 (lower is better)
Translates to: KQTQNSLGRPVL*LLVNCSIRFPL
Trigger: GAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CAA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAAGGATATTATGTGTTTaGGTGCCAGCCCTTCTCAGC +
Preference number: 3 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSRILCV*VPALLS
Trigger: GCTGAGAAGGGCTGGCACCAAAACACATAATATCCT...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CAA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGGCCTCCAAGCCTCCTTaGGATACAGAGTCTCTTGAA +
Preference number: 3 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWASKPP*DTESLE
Trigger: TTCAAGAGACTCTGTATCCAAAGGAGGCTTGGAGGC...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CAA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATGCCTCCAAGCCTCCTTaGGATACAGAGTCTCTTGAA +
Preference number: 3 (lower is better)
Translates to: LTLQTPDANHVGFLPDADASKPP*DTESLE
Trigger: TTCAAGAGACTCTGTATCCAAAGGAGGCTTGGAGGC...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 72 bp GCCAGCCCTTCTCAGCTAAGGCAAAGCTTCATCTCTTaGCAGAAGCATCGCCATGGCTCAAAAGTCAAGTCA +
Preference number: 3 (lower is better)
Translates to: ASPSQLRQSFIS*QKHRHGSKVKS
Trigger: TGACTTGACTTTTGAGCCATGGCGATGCTTCTGGCAAGAGATGAAGCTTTGCCTTAGCTGAGAAGGGCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR GCA 72 bp AGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTaGTGGTCAACTGCTCAATCAGATTTCCTCTCATCA +
Preference number: 3 (lower is better)
Translates to: RLRTAWEDRFSG*WSTAQSDFLSS
Trigger: TGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp GCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTaGAATTGTACAGAATGTCTCTTGTGGCTTTTTCTC +
Preference number: 3 (lower is better)
Translates to: AGSCRSEGFSVP*NCTECLLWLFL
Trigger: GAGAAAAAGCCACAAGAGACATTCTGTACAATTCCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CCA 72 bp ACCAAAATAAACATTGCAAGCAGACTCAGAACAGCCTaGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCT +
Preference number: 3 (lower is better)
Translates to: TKINIASRLRTA*EDRFSGCWSTA
Trigger: AGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAATGTTTATTTTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CAA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATAGTAAATGGAGAAAATaGTCACCAAGCTCCCCTGCT +
Preference number: 3 (lower is better)
Translates to: LTLQTPDANHVGFLPDADSKWRK*SPSSPA
Trigger: AGCAGGGGAGCTTGGTGACAATTTTCTCCATTTACT...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR-3UTR CAA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAACCTTCTTTTTGGAATaGAGAGGGGGACAAAGGGAA +
Preference number: 3 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKTFFLE*RGGQRE
Trigger: TTCCCTTTGTCCCCCTCTCAATTCCAAAAAGAAGGT...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTCCCTCTCCGGTCACCTaGTGGCCCATCCCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFPSPVT*WPIPGG
Trigger: GCCCCCTGGGATGGGCCATCAGGTGACCGGAGAGGG...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGTCCCTGGGGCCGGAATaGAGCATCCACACGGGCACA +
Preference number: 4 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWSLGPE*SIHTGT
Trigger: TGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGGGA...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTCGCCAGCACAGGCCCTaGCTTCGTGGTGTTGTCCAA +
Preference number: 4 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPRQHRP*LRGVVQ
Trigger: TTGGACAACACCACGAAGCCAGGGCCTGTGCTGGCG...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAGACAGCGTTGGGCGGTaGGTGCCAGGCTTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSDSVGR*VPGFPG
Trigger: CCCAGGGAAGCCTGGCACCCACCGCCCAACGCTGTC...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGATGCTGAAGCTCCTCTaGGTGCACAGGGAAGCCCGG +
Preference number: 4 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWMLKLL*VHREAR
Trigger: CCGGGCTTCCCTGTGCACCCAGAGGAGCTTCAGCAT...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCTCCCTGGGGCCGGAATaGAGCATCCACACGGGCACA +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCSLGPE*SIHTGT
Trigger: TGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGGGA...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTGTCTGGAAGACCGGATaGCCCACGGTGCAGAGCCGG +
Preference number: 4 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFVWKTG*PTVQSR
Trigger: CCGGCTCTGCACCGTGGGGCATCCGGTCTTCCAGAC...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCATCCCCCTGGAGGCTCTaGGCGACCCTCACAACCCCA +
Preference number: 4 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSSPWRL*ATLTTP
Trigger: TGGGGTTGTGAGGGTCGCCCAGAGCCTCCAGGGGGA...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGGGGGACCCAGGAACATaGGAGCCGCCACAAGTAAGA +
Preference number: 4 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWGDPGT*EPPQVR
Trigger: TCTTACTTGTGGCGGCTCCCATGTTCCTGGGTCCCC...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTAGCCTCACAAAGACCTaGCTCAGGAGGAAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPSLTKT*LRRKVQ
Trigger: CTGCACCTTCCTCCTGAGCCAGGTCTTTGTGAGGCT...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCTGTGCATGCCACCATaGTCGCTTGGGCGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCLCMPP*SLGRFS
Trigger: CGAGAACCGCCCAAGCGATCATGGTGGCATGCACAG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGGTCTGGAAGACCGGATaGCCCACGGTGCAGAGCCGG +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTVWKTG*PTVQSR
Trigger: CCGGCTCTGCACCGTGGGGCATCCGGTCTTCCAGAC...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAGGTGCCAGGCTTCCCTaGGGCCGGAATGAAGCATCC +
Preference number: 4 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSGARLP*GRNEAS
Trigger: GGATGCTTCATTCCGGCCCCAGGGAAGCCTGGCACC...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGGACAGCGTTGGGCGGTaGGTGCCAGGCTTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWDSVGR*VPGFPG
Trigger: CCCAGGGAAGCCTGGCACCCACCGCCCAACGCTGTC...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTACCTTGGCCCCAGTCTaGAAGACCGGATGCCCCACG +
Preference number: 4 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASTLAPV*KTGCPT
Trigger: CGTGGGGCATCCGGTCTTCCAGACTGGGGCCAAGGT...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CTGGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGGCTGAACAGAACGGCTaGCCCGTGGGCACCCACGGC +
Preference number: 4 (lower is better)
Translates to: LAAGQLLNQISSHHSLRGAEQNG*PVGTHG
Trigger: GCCGTGGGTGCCCACGGGGCAGCCGTTCTGTTCAGC...CCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTCCCTGTGAAGAGTCGTaGGTGGTGTTCATCCAGATT +
Preference number: 4 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPPCEES*VVFIQI
Trigger: AATCTGGATGAACACCACCCACGACTCTTCACAGGG...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCCCGAAGAAAAGAGCTaGGGTCTCTCTGTCGCCGGA +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCPEEKS*GLSVAG
Trigger: TCCGGCGACAGAGAGACCCCAGCTCTTTTCTTCGGG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGTCCCCCTGGAGGCTCTaGGCGACCCTCACAACCCCA +
Preference number: 4 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWSPWRL*ATLTTP
Trigger: TGGGGTTGTGAGGGTCGCCCAGAGCCTCCAGGGGGA...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp TTGACTCCTGGTAATGGGGAAGATAGGGTCCAAAACAAAGAACCTGTGCTAGCTCCCTCTCCGGTCACCTaGTGGCCCATCCCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: LTPGNGEDRVQNKEPVLAPSPVT*WPIPGG
Trigger: GCCCCCTGGGATGGGCCATCAGGTGACCGGAGAGGG...AGCTAGCACAGGTTCTTTGTTTTGGACCCTATCTTCCCCATTACCAGGAGTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGCGAGGGGACAGGCGCTaGCCAGAGCCATCGAATACT +
Preference number: 4 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMRGDRR*PEPSNT
Trigger: AGTATTCGATGGCTCTGGTCAGCGCCTGTCCCCTCG...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGGGATCCACAGGGAGATaGGGGTCGGGTGGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRGSTGR*GSGGSE
Trigger: TTCAGACCCACCCGACCCTCATCTCCCTGTGGATCC...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGCCCAGGGACCACTCATaGACAGGGTTCTCCCCGTAC +
Preference number: 4 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMPRDHS*TGFSPY
Trigger: GTACGGGGAGAACCCTGTGCATGAGTGGTCCCTGGG...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCACCCAGGTGGCCTTTaGTACATGGAGCACTGTGGA +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCHPGGL*YMEHCG
Trigger: TCCACAGTGCTCCATGTACCAAAGGCCACCTGGGTG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGCAGGGCAGCTTGTGGTaGGAAAAGGCGGCGACCTTC +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRQGSLW*EKAATF
Trigger: GAAGGTCGCCGCCTTTTCCCACCACAAGCTGCCCTG...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGCATCACATCCAGGGTTaGAATCAGGTGGATGATGGG +
Preference number: 4 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWHHIQG*NQVDDG
Trigger: CCCATCATCCACCTGATTCCAACCCTGGATGTGATG...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGCTGTGCATGCCACCATaGTCGCTTGGGCGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWLCMPP*SLGRFS
Trigger: CGAGAACCGCCCAAGCGATCATGGTGGCATGCACAG...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTTGGGAACGGTCTGGCTaGAGGGTTCCTTGGAGCATT +
Preference number: 4 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASWERSG*RVPWSI
Trigger: AATGCTCCAAGGAACCCTTCAGCCAGACCGTTCCCA...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGAGGGCCACAGTCCTTTaGGAAGGGGATCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTRATVL*EGDQLP
Trigger: CGGAAGCTGATCCCCTTCTCAAAGGACTGTGGCCCT...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTTTGGAAGCAAAGGGCTaGGGTCAGACAGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFLEAKG*GQTGCF
Trigger: GAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAA...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTTTTCTATGTGGGACAGCGTTaGGCGGTGGGTGCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: SKVKSGCRPGDTCWQHLFYVGQR*AVGARL
Trigger: AAGCCTGGCACCCACCGCCCAACGCTGTCCCACATA...GAAAAGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTGAAAGTCTGAACTTCTaGCCAGGGATAGATACTGTT +
Preference number: 4 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPESLNF*PGIDTV
Trigger: AACAGTATCTATCCCTGGTCAGAAGTTCAGACTTTC...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGAAGTATGAGCCAATCTaGTCCCCCTGGAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTKYEPI*SPWRLW
Trigger: CCAGAGCCTCCAGGGGGATCAGATTGGCTCATACTT...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGTGGGAACGGTCTGGCTaGAGGGTTCCTTGGAGCATT +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRWERSG*RVPWSI
Trigger: AATGCTCCAAGGAACCCTTCAGCCAGACCGTTCCCA...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGCCAGTCTGGGTTCCATaGTACAGGTACAACGCTCCC +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRPVWVP*YRYNAP
Trigger: GGGAGCGTTGTACCTGTATCATGGAACCCAGACTGG...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTGCACTCCACCTTCACTaGTTTGGCCTTCTGAGGAGT +
Preference number: 4 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASALHLH*FGLLRS
Trigger: ACTCCTCAGAAGGCCAAATCAGTGAAGGTGGAGTGC...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029744.6
CDS-3UTR GCA 90 bp TCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTTTTCAGAGCCATCGAATACTaGACGTGCCCCAGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: SKVKSGCRPGDTCWQHLFRAIEY*TCPSGP
Trigger: TGGACCGCTGGGGCACGTGCAGTATTCGATGGCTCT...GAAAAGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTCTGCACCGTGCAGCTTaGATTGCCAGAGATGACTTG +
Preference number: 4 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASLHRAA*IARDDL
Trigger: CAAGTCATCTCTGGCAATGCAAGCTGCACGGTGCAG...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTCAGGGCAGCTTGTGGTaGGAAAAGGCGGCGACCTTC +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPQGSLW*EKAATF
Trigger: GAAGGTCGCCGCCTTTTCCCACCACAAGCTGCCCTG...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCACCGGGAAGAAGCATaGAGGAAACAGAGTAACCCA +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCHREEA*RKQSNP
Trigger: TGGGTTACTCTGTTTCCTCCATGCTTCTTCCCGGTG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGGTATCGGAGGGCCTGTaGCATGGAGACAGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTVSEGL*HGDSSN
Trigger: ATTGCTGCTGTCTCCATGCCACAGGCCCTCCGATAC...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGAGGGTTGGAATCAGGTaGATGATGGGCTGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTRVGIR*MMGWEL
Trigger: CAGCTCCCAGCCCATCATCCACCTGATTCCAACCCT...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCATACCGATGCAGAGTaGACTCACTGGAGAACACGA +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCHTDAE*THWRTR
Trigger: TCGTGTTCTCCAGTGAGTCCACTCTGCATCGGTATG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CAA 72 bp GGCCTGGAGACACATGCTGGCAGCATCTTTTCCCCTTaGAGCCTCCAAGCCTCCTTTGGATACAGAGTCTCT +
Preference number: 4 (lower is better)
Translates to: GLETHAGSIFSP*SLQASFGYRVS
Trigger: AGAGACTCTGTATCCAAAGGAGGCTTGGAGGCTCAAAGGGGAAAAGATGCTGCCAGCATGTGTCTCCAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTCAACGCCCAGGAGTTTaGGACACTACTTGGAAGCAA +
Preference number: 4 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASQRPGV*DTTWKQ
Trigger: TTGCTTCCAAGTAGTGTCTCAAACTCCTGGGCGTTG...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGGAAGCACCAGGTCTGTaGCACATTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTEAPGL*HIHCQG
Trigger: GCCCTGACAATGAATGTGTCACAGACCTGGTGCTTC...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTATGTCCATGTCAGCTTaGAGCACCAGGTCTGTGACA +
Preference number: 4 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFMSMSA*STRSVT
Trigger: TGTCACAGACCTGGTGCTTCAAGCTGACATGGACAT...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATGGATCCACAGGGAGATaGGGGTCGGGTGGGTCTGAA +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHGSTGR*GSGGSE
Trigger: TTCAGACCCACCCGACCCTCATCTCCCTGTGGATCC...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCTGTCCACCCCCAACATaGTGTAAGACACTGTATCCA +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCCPPPT*CKTLYP
Trigger: TGGATACAGTGTCTTACAGCATGTTGGGGGTGGACA...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCGCTGAACAGAACGGCTaGCCCGTGGGCACCCACGGC +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIAEQNG*PVGTHG
Trigger: GCCGTGGGTGCCCACGGGGCAGCCGTTCTGTTCAGC...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATGATCTCAGTCCCCTTTaGCAGCAGTCCAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: LTLQTPDANHVGFLPDADDLSPL*QQSKVA
Trigger: TGCCACCTTGGACTGCTGGCAAAGGGGACTGAGATC...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCTCAGTAGTAGGACACTaGCCTCCTCAGTTCCTAACT +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCSVVGH*PPQFLT
Trigger: AGTTAGGAACTGAGGAGGGCAGTGTCCTACTACTGA...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATTATGTGGGACAGCGTTaGGCGGTGGGTGCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHYVGQR*AVGARL
Trigger: AAGCCTGGCACCCACCGCCCAACGCTGTCCCACATA...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTCCCGAAGAAAAGAGCTaGGGTCTCTCTGTCGCCGGA +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPPEEKS*GLSVAG
Trigger: TCCGGCGACAGAGAGACCCCAGCTCTTTTCTTCGGG...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CCAAGCCTCCTTTGGATACAGAGTCTCTTGAAAAGGCTGCCAAAGTGGGCTTCTCCGGTCTCCTTGTTCTaGGGACCCAGGAACATGGGA +
Preference number: 4 (lower is better)
Translates to: PSLLWIQSLLKRLPKWASPVSLF*GPRNMG
Trigger: TCCCATGTTCCTGGGTCCCCAGAACAAGGAGACCGG...AGAAGCCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCCAAAGGAGGCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATCACAGTCAAGGCCACTaGCCGGAGGTAATCCGATGT +
Preference number: 4 (lower is better)
Translates to: LTLQTPDANHVGFLPDADHSQGH*PEVIRC
Trigger: ACATCGGATTACCTCCGGCCAGTGGCCTTGACTGTG...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATCGCCAGCACAGGCCCTaGCTTCGTGGTGTTGTCCAA +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHRQHRP*LRGVVQ
Trigger: TTGGACAACACCACGAAGCCAGGGCCTGTGCTGGCG...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTACAGGAAGCTCACCTTaGCCCCAGTCTGGAAGACCG +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPTGSSP*PQSGRP
Trigger: CGGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGT...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTTTTCAGCCTCACAAAGACCTaGCTCAGGAGGAAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: SKVKSGCRPGDTCWQHLFSLTKT*LRRKVQ
Trigger: CTGCACCTTCCTCCTGAGCCAGGTCTTTGTGAGGCT...GAAAAGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATATGCTGAAGCTCCTCTaGGTGCACAGGGAAGCCCGG +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHMLKLL*VHREAR
Trigger: CCGGGCTTCCCTGTGCACCCAGAGGAGCTTCAGCAT...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTCTGTCGTCCACCTTaGACCACAAATGGGGACTTC +
Preference number: 4 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMFCRPP*TTNGDF
Trigger: GAAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAA...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGAATTCGGTCCCCCAGTaGATCCACAATGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTNSVPQ*IHNVCQ
Trigger: CTGACAGACATTGTGGATGCACTGGGGGACCGAATT...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTTTGGAAGCAAAGGGCTaGGGTCAGACAGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPLEAKG*GQTGCF
Trigger: GAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAA...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATAGAGCCATCGAATACTaGACGTGCCCCAGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHRAIEY*TCPSGP
Trigger: TGGACCGCTGGGGCACGTGCAGTATTCGATGGCTCT...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAATCCGATGTATCCAGTaGATGGAAGTGCAGCTGTTC +
Preference number: 4 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSIRCIQ*MEVQLF
Trigger: GAACAGCTGCACTTCCATGCACTGGATACATCGGAT...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTTACTCCCATTCAGTCTaGTTGCATGCTGAAGCTCCT +
Preference number: 4 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFYSHSV*LHAEAP
Trigger: AGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTA...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGCCTGTAGTCGGTGGATaGAGAAGCCAATCTCAGACA +
Preference number: 4 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTPVVGG*RSQSQT
Trigger: TGTCTGAGATTGGCTTCTCCATCCACCGACTACAGG...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATGGGGACCCAGGAACATaGGAGCCGCCACAAGTAAGA +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHGDPGT*EPPQVR
Trigger: TCTTACTTGTGGCGGCTCCCATGTTCCTGGGTCCCC...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTGGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGGTATCGGAGGGCCTGTaGCATGGAGACAGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: LAAGQLLNQISSHHSLRGVSEGL*HGDSSN
Trigger: ATTGCTGCTGTCTCCATGCCACAGGCCCTCCGATAC...CCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATACAGGAAGCTCACCTTaGCCCCAGTCTGGAAGACCG +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHTGSSP*PQSGRP
Trigger: CGGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGT...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGCCACCGCTACATCAGTaGAACCATCATGGTTCAGAT +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRPPLHQ*NHHGSD
Trigger: ATCTGAACCATGATGGTTTCACTGATGTAGCGGTGG...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CTGGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGACGGGCAGAGCTCGCTaGCAAAGTATGAGCCAATCT +
Preference number: 4 (lower is better)
Translates to: LAAGQLLNQISSHHSLRGTGRAR*QSMSQS
Trigger: AGATTGGCTCATACTTTGGCAGCGAGCTCTGCCCGT...CCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGTCAGTAGTAGGACACTaGCCTCCTCAGTTCCTAACT +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRSVVGH*PPQFLT
Trigger: AGTTAGGAACTGAGGAGGGCAGTGTCCTACTACTGA...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGAGTTCCTCTCCATCATaGGACTCTCCATCAGTGACA +
Preference number: 4 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMSSSPS*DSPSVT
Trigger: TGTCACTGATGGAGAGTCCCATGATGGAGAGGAACT...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGCATCACATCCAGGGTTaGAATCAGGTGGATGATGGG +
Preference number: 4 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWHHIQG*NQVDDG
Trigger: CCCATCATCCACCTGATTCCAACCCTGGATGTGATG...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGACCTTGAACCACAAATaGGGACTTCCTGGAGCCTCT +
Preference number: 4 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWTLNHK*GLPGAS
Trigger: AGAGGCTCCAGGAAGTCCCCATTTGTGGTTCAAGGT...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CAA 72 bp TTTGAGCCTCCAAGCCTCCTTTGGATACAGAGTCTCTaGAAAAGGCTGCCAAAGTGGGCTTCTGAGCCTCCT +
Preference number: 4 (lower is better)
Translates to: FEPPSLLWIQSL*KRLPKWASEPP
Trigger: AGGAGGCTCAGAAGCCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCCAAAGGAGGCTTGGAGGCTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGGGACAAAGGGAATCTGCAAGGAGAGTCGGGAGCAAAATCATTTGACTCCTGGCCACCGCTACATCAGTaGAACCATCATGGTTCAGAT +
Preference number: 4 (lower is better)
Translates to: GDKGNLQGESGAKSFDSWPPLHQ*NHHGSD
Trigger: ATCTGAACCATGATGGTTTCACTGATGTAGCGGTGG...CCAGGAGTCAAATGATTTTGCTCCCGACTCTCCTTGCAGATTCCCTTTGTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGTTGCATTGCCAGAGATaGCTTGAGATAGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRLHCQR*LEIVTG
Trigger: TCCTGTCACTATCTCAAGTCATCTCTGGCAATGCAA...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGCATTGCCAGAGATaGCTTGAGATAGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMLHCQR*LEIVTG
Trigger: TCCTGTCACTATCTCAAGTCATCTCTGGCAATGCAA...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATCTGCACCGTGCAGCTTaGATTGCCAGAGATGACTTG +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHLHRAA*IARDDL
Trigger: CAAGTCATCTCTGGCAATGCAAGCTGCACGGTGCAG...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGGTGAAGAGTCGTGGGTaGTGTTCATCCAGATTAAAG +
Preference number: 4 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMVKSRG*CSSRLK
Trigger: CTTTAATCTGGATGAACACCACCCACGACTCTTCAC...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATTGCAAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAGAAGAATCGCTCATCTaGATCACTAGCAATAGCTCT +
Preference number: 4 (lower is better)
Translates to: IASRLRTAWEDRFSGCWSEESLI*ITSNSS
Trigger: AGAGCTATTGCTAGTGATCCAGATGAGCGATTCTTC...TGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTTGCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CCAAGCCTCCTTTGGATACAGAGTCTCTTGAAAAGGCTGCCAAAGTGGGCTTCTCCTGTAGTCGGTGGATaGAGAAGCCAATCTCAGACA +
Preference number: 4 (lower is better)
Translates to: PSLLWIQSLLKRLPKWASPVVGG*RSQSQT
Trigger: TGTCTGAGATTGGCTTCTCCATCCACCGACTACAGG...AGAAGCCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCCAAAGGAGGCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCCATCTTTCTTTAGCTaGAAGGCGATAACTTTTCCT +
Preference number: 4 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCPSFFS*KAITFP
Trigger: AGGAAAAGTTATCGCCTTCCAGCTAAAGAAAGATGG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TTGACTCCTGGTAATGGGGAAGATAGGGTCCAAAACAAAGAACCTGTGCTAGCTCACAGTCAAGGCCACTaGCCGGAGGTAATCCGATGT +
Preference number: 4 (lower is better)
Translates to: LTPGNGEDRVQNKEPVLAHSQGH*PEVIRC
Trigger: ACATCGGATTACCTCCGGCCAGTGGCCTTGACTGTG...AGCTAGCACAGGTTCTTTGTTTTGGACCCTATCTTCCCCATTACCAGGAGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTACCTTGGCCCCAGTCTaGAAGACCGGATGCCCCACG +
Preference number: 4 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFTLAPV*KTGCPT
Trigger: CGTGGGGCATCCGGTCTTCCAGACTGGGGCCAAGGT...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAACGAGGGGACAGGCGCTaGCCAGAGCCATCGAATACT +
Preference number: 4 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKRGDRR*PEPSNT
Trigger: AGTATTCGATGGCTCTGGTCAGCGCCTGTCCCCTCG...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGAGGGCCACAGTCCTTTaGGAAGGGGATCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVRATVL*EGDQLP
Trigger: CGGAAGCTGATCCCCTTCTCAAAGGACTGTGGCCCT...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CTGGCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGTGTCCACCCCCAACATaGTGTAAGACACTGTATCCA +
Preference number: 4 (lower is better)
Translates to: LAAGQLLNQISSHHSLRGCPPPT*CKTLYP
Trigger: TGGATACAGTGTCTTACAGCATGTTGGGGGTGGACA...CCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAACCCAGGGACCACTCATaGACAGGGTTCTCCCCGTAC +
Preference number: 4 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKPRDHS*TGFSPY
Trigger: GTACGGGGAGAACCCTGTGCATGAGTGGTCCCTGGG...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTTCCAGTGCATGGAAGTaGAGCTGTTCACAAGTGACA +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPSSAWK*SCSQVT
Trigger: TGTCACTTGTGAACAGCTGCACTTCCATGCACTGGA...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGGCTCAGTCAGGTTCTaGACCGTGCAGCTTGCATTG +
Preference number: 4 (lower is better)
Translates to: RKGDQERAEKLTAAETPTGSVRF*TVQLAL
Trigger: CAATGCAAGCTGCACGGTGCAGAACCTGACTGAGCC...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTTACTCCCATTCAGTCTaGTTGCATGCTGAAGCTCCT +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPYSHSV*LHAEAP
Trigger: AGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTA...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATGTGAAGAGTCGTGGGTaGTGTTCATCCAGATTAAAG +
Preference number: 4 (lower is better)
Translates to: LTLQTPDANHVGFLPDADVKSRG*CSSRLK
Trigger: CTTTAATCTGGATGAACACCACCCACGACTCTTCAC...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTGGTGCCAGGCTTCCCTaGGGCCGGAATGAAGCATCC +
Preference number: 4 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFGARLP*GRNEAS
Trigger: GGATGCTTCATTCCGGCCCCAGGGAAGCCTGGCACC...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCCGACATCCATGTATGTaGGACAGCGTTGGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIRHPCM*DSVGRW
Trigger: CCACCGCCCAACGCTGTCCCACATACATGGATGTCG...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATCACCGGGAAGAAGCATaGAGGAAACAGAGTAACCCA +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHHREEA*RKQSNP
Trigger: TGGGTTACTCTGTTTCCTCCATGCTTCTTCCCGGTG...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCCCAGTCTGGGTTCCATaGTACAGGTACAACGCTCCC +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIPVWVP*YRYNAP
Trigger: GGGAGCGTTGTACCTGTATCATGGAACCCAGACTGG...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAACGGGCAGAGCTCGCTaGCAAAGTATGAGCCAATCT +
Preference number: 4 (lower is better)
Translates to: RKGDQERAEKLTAAETPTTGRAR*QSMSQS
Trigger: AGATTGGCTCATACTTTGGCAGCGAGCTCTGCCCGT...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGGATCTCAGTCCCCTTTaGCAGCAGTCCAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVDLSPL*QQSKVA
Trigger: TGCCACCTTGGACTGCTGGCAAAGGGGACTGAGATC...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATGAAGAATCGCTCATCTaGATCACTAGCAATAGCTCT +
Preference number: 4 (lower is better)
Translates to: LTLQTPDANHVGFLPDADEESLI*ITSNSS
Trigger: AGAGCTATTGCTAGTGATCCAGATGAGCGATTCTTC...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATTCAGTGAAACCATCATaGTTCAGATCAGGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: LTLQTPDANHVGFLPDADSVKPS*FRSGRA
Trigger: TGCTCTTCCTGATCTGAACCATGATGGTTTCACTGA...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCAGGGTTGGAATCAGGTaGATGATGGGCTGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIRVGIR*MMGWEL
Trigger: CAGCTCCCAGCCCATCATCCACCTGATTCCAACCCT...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GCTGCTGGTCAACTGCTCAATCAGATTTCCTCTCATCACAGTCTAAGAGGGCCTGATGTATCCAGTGCATaGAAGTGCAGCTGTTCACAA +
Preference number: 4 (lower is better)
Translates to: AAGQLLNQISSHHSLRGPDVSSA*KCSCSQ
Trigger: TTGTGAACAGCTGCACTTCCATGCACTGGATACATC...AGGCCCTCTTAGACTGTGATGAGAGGAAATCTGATTGAGCAGTTGACCAGCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTAAGTATGAGCCAATCTaGTCCCCCTGGAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFKYEPI*SPWRLW
Trigger: CCAGAGCCTCCAGGGGGATCAGATTGGCTCATACTT...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGGAAGCACCAGGTCTGTaGCACATTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVEAPGL*HIHCQG
Trigger: GCCCTGACAATGAATGTGTCACAGACCTGGTGCTTC...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTGGCTCAGTCAGGTTCTaGACCGTGCAGCTTGCATTG +
Preference number: 4 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFGSVRF*TVQLAL
Trigger: CAATGCAAGCTGCACGGTGCAGAACCTGACTGAGCC...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTCGACATCCATGTATGTaGGACAGCGTTGGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFRHPCM*DSVGRW
Trigger: CCACCGCCCAACGCTGTCCCACATACATGGATGTCG...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGAGACAGGCTGCTTCCTaGCCTCGTCTTTTACAGTCC +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVRQAAS*PRLLQS
Trigger: GGACTGTAAAAGACGAGGCCAGGAAGCAGCCTGTCT...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAACCTTGAACCACAAATaGGGACTTCCTGGAGCCTCT +
Preference number: 4 (lower is better)
Translates to: RKGDQERAEKLTAAETPTTLNHK*GLPGAS
Trigger: AGAGGCTCCAGGAAGTCCCCATTTGTGGTTCAAGGT...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCGCAGAGTGGACTCACTaGAGAACACGAGGTGAGGTT +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIAEWTH*RTRGEV
Trigger: AACCTCACCTCGTGTTCTCCAGTGAGTCCACTCTGC...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCATGTCCATGTCAGCTTaGAGCACCAGGTCTGTGACA +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIMSMSA*STRSVT
Trigger: TGTCACAGACCTGGTGCTTCAAGCTGACATGGACAT...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGTTCTGTCGTCCACCTTaGACCACAAATGGGGACTTC +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVFCRPP*TTNGDF
Trigger: GAAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAA...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGCCCTGTGAAGAGTCGTaGGTGGTGTTCATCCAGATT +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVPCEES*VVFIQI
Trigger: AATCTGGATGAACACCACCCACGACTCTTCACAGGG...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAAGACAGGCTGCTTCCTaGCCTCGTCTTTTACAGTCC +
Preference number: 4 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKRQAAS*PRLLQS
Trigger: GGACTGTAAAAGACGAGGCCAGGAAGCAGCCTGTCT...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTGCAGAGTGGACTCACTaGAGAACACGAGGTGAGGTT +
Preference number: 4 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFAEWTH*RTRGEV
Trigger: AACCTCACCTCGTGTTCTCCAGTGAGTCCACTCTGC...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGCATACCGATGCAGAGTaGACTCACTGGAGAACACGA +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVHTDAE*THWRTR
Trigger: TCGTGTTCTCCAGTGAGTCCACTCTGCATCGGTATG...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAACATAACGTGTCACTCTaGCAGCCTCACAGGCCTTTA +
Preference number: 4 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKHNVSL*QPHRPL
Trigger: TAAAGGCCTGTGAGGCTGGCAGAGTGACACGTTATG...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp CCAAAACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAAATTCGGTCCCCCAGTaGATCCACAATGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: PKHRTKGRGFSQHAISRKNSVPQ*IHNVCQ
Trigger: CTGACAGACATTGTGGATGCACTGGGGGACCGAATT...TTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGAGTTCCTCTCCATCATaGGACTCTCCATCAGTGACA +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVSSSPS*DSPSVT
Trigger: TGTCACTGATGGAGAGTCCCATGATGGAGAGGAACT...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATCCATCTTTCTTTAGCTaGAAGGCGATAACTTTTCCT +
Preference number: 4 (lower is better)
Translates to: GDQERAEKLTAAETPTAHPSFFS*KAITFP
Trigger: AGGAAAAGTTATCGCCTTCCAGCTAAAGAAAGATGG...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CCA 90 bp TTGACTCCTGGTAATGGGGAAGATAGGGTCCAAAACAAAGAACCTGTGCTAGCTTCAGTGAAACCATCATaGTTCAGATCAGGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: LTPGNGEDRVQNKEPVLASVKPS*FRSGRA
Trigger: TGCTCTTCCTGATCTGAACCATGATGGTTTCACTGA...AGCTAGCACAGGTTCTTTGTTTTGGACCCTATCTTCCCCATTACCAGGAGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR TCA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCAGCCATCCAAAACAATaGCGACATCCATGTATGTGG +
Preference number: 4 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVISHPKQ*RHPCMW
Trigger: CCACATACATGGATGTCGTCATTGTTTTGGATGGCT...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAAGCATTAGCAAATTTTaGTGGCCCACCATGTACACA +
Preference number: 4 (lower is better)
Translates to: RKGDQERAEKLTAAETPTSISKF*WPTMYT
Trigger: TGTGTACATGGTGGGCCAGCAAAATTTGCTAATGCT...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTATCCGATGTATCCAGTaGATGGAAGTGCAGCTGTTC +
Preference number: 4 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFIRCIQ*MEVQLF
Trigger: GAACAGCTGCACTTCCATGCACTGGATACATCGGAT...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGAGCATTAGCAAATTTTaGTGGCCCACCATGTACACA +
Preference number: 4 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVSISKF*WPTMYT
Trigger: TGTGTACATGGTGGGCCAGCAAAATTTGCTAATGCT...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR GCA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTTCCAGTGCATGGAAGTaGAGCTGTTCACAAGTGACA +
Preference number: 4 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFSSAWK*SCSQVT
Trigger: TGTCACTTGTGAACAGCTGCACTTCCATGCACTGGA...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
3UTR CAA 72 bp CTGTCAGAGCTAAACTATGGAGATCAGAAACTGTCTTaGCTGTTCAAAAGTCTTAATTACAATAAACAACGA +
Preference number: 4 (lower is better)
Translates to: LSELNYGDQKLS*LFKSLNYNKQR
Trigger: TCGTTGTTTATTGTAATTAAGACTTTTGAACAGCAAAGACAGTTTCTGATCTCCATAGTTTAGCTCTGACAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGACGCGTCCGGTCTCCTaGTTCTGGGGACCCAGGAAC +
Preference number: 5 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWTRPVS*FWGPRN
Trigger: GTTCCTGGGTCCCCAGAACAAGGAGACCGGACGCGT...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp GGGACAGCGTTGGGCGGTGGGTGCCAGGCTTCCCTGGGGCCGGAATaGAGCATCCACACGGGCACATATTCCAGAACTGAAGACAGAGCT +
Preference number: 5 (lower is better)
Translates to: GTALGGGCQASLGPE*SIHTGTYSRTEDRA
Trigger: AGCTCTGTCTTCAGTTCTGGAATATGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGGGAAGCCTGGCACCCACCGCCCAACGCTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp GTGACATTGCCAACACTAAGCTGGAGCTGCCGAGGGGACAGGCGCTaGCCAGAGCCATCGAATACTGCACGTGCCCCAGCGGTCCACTCA +
Preference number: 5 (lower is better)
Translates to: VTLPTLSWSCRGDRR*PEPSNTARAPAVHS
Trigger: TGAGTGGACCGCTGGGGCACGTGCAGTATTCGATGGCTCTGGTCAGCGCCTGTCCCCTCGGCAGCTCCAGCTTAGTGTTGGCAATGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGATCTTCCAGGGCAGCTaGTGGTGGGAAAAGGCGGCG +
Preference number: 5 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWIFQGS*WWEKAA
Trigger: CGCCGCCTTTTCCCACCACAAGCTGCCCTGGAAGAT...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp CCTGGGGCCGGAATGAAGCATCCACACGGGCACATATTCCAGAACTaGAGACAGAGCTGCCGCAGGCACGAGACCAAAGAGGGGCACAGG +
Preference number: 5 (lower is better)
Translates to: PGAGMKHPHGHIFQN*RQSCRRHETKEGHR
Trigger: CCTGTGCCCCTCTTTGGTCTCGTGCCTGCGGCAGCTCTGTCTTCAGTTCTGGAATATGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp GCAATCCTCTGGGTAGGATGCGGCCTGATTCCAGTCTGGGTTCCATaGTACAGGTACAACGCTCCCCGGTGTCCATCCTCCAGGGGTGCC +
Preference number: 5 (lower is better)
Translates to: AILWVGCGLIPVWVP*YRYNAPRCPSSRGA
Trigger: GGCACCCCTGGAGGATGGACACCGGGGAGCGTTGTACCTGTATCATGGAACCCAGACTGGAATCAGGCCGCATCCTACCCAGAGGATTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp TCCCAGGGGGCACCCACCAGCATCCATCGCTGTCCACCCCCAACATaGTGTAAGACACTGTATCCAAATTCGGCCTCTGGTGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: SQGAPTSIHRCPPPT*CKTLYPNSASGGPV
Trigger: CACAGGGCCACCAGAGGCCGAATTTGGATACAGTGTCTTACAGCATGTTGGGGGTGGACAGCGATGGATGCTGGTGGGTGCCCCCTGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp TCCATGTATGTGGGACAGCGTTGGGCGGTGGGTGCCAGGCTTCCCTaGGGCCGGAATGAAGCATCCACACGGGCACATATTCCAGAACTG +
Preference number: 5 (lower is better)
Translates to: SMYVGQRWAVGARLP*GRNEASTRAHIPEL
Trigger: CAGTTCTGGAATATGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGGGAAGCCTGGCACCCACCGCCCAACGCTGTCCCACATACATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp ACCACACTGATGTGGGGAGGCATCACATCCAGGGTTGGAATCAGGTaGATGATGGGCTGGGAGCTGAACAGAACGGCTGCCCCGTGGGCA +
Preference number: 5 (lower is better)
Translates to: TTLMWGGITSRVGIR*MMGWELNRTAAPWA
Trigger: TGCCCACGGGGCAGCCGTTCTGTTCAGCTCCCAGCCCATCATCCACCTGATTCCAACCCTGGATGTGATGCCTCCCCACATCAGTGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTGTATGTGGGACAGCGTaGGGCGGTGGGTGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFVCGTA*GGGCQA
Trigger: AGCCTGGCACCCACCGCCCAACGCTGTCCCACATAC...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGAACAGGAAGCTCACCTaGGCCCCAGTCTGGAAGACC +
Preference number: 5 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWNRKLT*APVWKT
Trigger: GGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGTT...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTACCCTAAGAGTGGTCTaGAATTCAGGGCCAGGACCC +
Preference number: 5 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPTLRVV*NSGPGP
Trigger: GGGTCCTGGCCCTGAATTCAAGACCACTCTTAGGGT...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp TCGACTGTTACTCCCATTCAGTCTGCTTGCATGCTGAAGCTCCTCTaGGTGCACAGGGAAGCCCGGGGGCTCAGTCAGGTTCTGCACCGT +
Preference number: 5 (lower is better)
Translates to: STVTPIQSACMLKLL*VHREARGLSQVLHR
Trigger: ACGGTGCAGAACCTGACTGAGCCCCCGGGCTTCCCTGTGCACCCAGAGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTAACAGTCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGACCCTAAGAGTGGTCTaGAATTCAGGGCCAGGACCC +
Preference number: 5 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWTLRVV*NSGPGP
Trigger: GGGTCCTGGCCCTGAATTCAAGACCACTCTTAGGGT...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp GGTTGGAATCAGGTGGATGATGGGCTGGGAGCTGAACAGAACGGCTaGCCCGTGGGCACCCACGGCAACATCTACAAGATCATCTCCATC +
Preference number: 5 (lower is better)
Translates to: GWNQVDDGLGAEQNG*PVGTHGNIYKIISI
Trigger: GATGGAGATGATCTTGTAGATGTTGCCGTGGGTGCCCACGGGGCAGCCGTTCTGTTCAGCTCCCAGCCCATCATCCACCTGATTCCAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CTTACTCTCCAGACACCTGATGCCAACCATGTAGGCTTCCTCCCAGATGCAGATGTATGTGGGACAGCGTaGGGCGGTGGGTGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: LTLQTPDANHVGFLPDADVCGTA*GGGCQA
Trigger: AGCCTGGCACCCACCGCCCAACGCTGTCCCACATAC...ATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp GCCGGAGATAGTGACCAAGGACCGCAATCCCATAACGTGTCACTCTaGCAGCCTCACAGGCCTTTAGCGCTGCTGGAAGTTCCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: AGDSDQGPQSHNVSL*QPHRPLALLEVPLH
Trigger: ATGGAGAGGAACTTCCAGCAGCGCTAAAGGCCTGTGAGGCTGGCAGAGTGACACGTTATGGGATTGCGGTCCTTGGTCACTATCTCCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp ATCAGGTGGATGATGGGCTGGGAGCTGAACAGAACGGCTGCCCCGTaGGCACCCACGGCAACATCTACAAGATCATCTCCATCCAGATCT +
Preference number: 5 (lower is better)
Translates to: IRWMMGWELNRTAAP*APTATSTRSSPSRS
Trigger: AGATCTGGATGGAGATGATCTTGTAGATGTTGCCGTGGGTGCCCACGGGGCAGCCGTTCTGTTCAGCTCCCAGCCCATCATCCACCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp GTCCTTCTGAACCACACTGATGTGGGGAGGCATCACATCCAGGGTTaGAATCAGGTGGATGATGGGCTGGGAGCTGAACAGAACGGCTGC +
Preference number: 5 (lower is better)
Translates to: VLLNHTDVGRHHIQG*NQVDDGLGAEQNGC
Trigger: GCAGCCGTTCTGTTCAGCTCCCAGCCCATCATCCACCTGATTCCAACCCTGGATGTGATGCCTCCCCACATCAGTGTGGTTCAGAAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TGGCCTTGCTCCCAGAGAAGGATGAGGGTTGGGATGCCTCAGCCCGGAGAGCCTTCTGTGACACATTCATaGTCAGGGCCACAGTCCTTT +
Preference number: 5 (lower is better)
Translates to: WPCSQRRMRVGMPQPGEPSVTHS*SGPQSF
Trigger: AAAGGACTGTGGCCCTGACAATGAATGTGTCACAGA...AGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CTCAGGTTTCAGCCGGCTGGCAGTTGCCGGTCTGAAGGATTCTCTGTGCCCTGGTCCTCAGTTCCTAACTaGAAGGTGCTGACCACTGTC +
Preference number: 5 (lower is better)
Translates to: LRFQPAGSCRSEGFSVPWSSVPN*KVLTTV
Trigger: GACAGTGGTCAGCACCTTCAAGTTAGGAACTGAGGA...CCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAGCCGGCTGAAACCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp CTGGAAGGCGATAACTTTTCCTCGATGTCTAAACCTCGGTGCCCCTaGGAGAAAGAGGCGGCGTCCACCGGGAAGAAGCATGGAGGAAAC +
Preference number: 5 (lower is better)
Translates to: LEGDNFSSMSKPRCP*EKEAASTGKKHGGN
Trigger: GTTTCCTCCATGCTTCTTCCCGGTGGACGCCGCCTCTTTCTCTCAGGGGCACCGAGGTTTAGACATCGAGGAAAAGTTATCGCCTTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp GCGGTCAGACAGGCTGCTTCCTGGCCTCGTCTTTTACAGTCCTTCTaGACCACACTGATGTGGGGAGGCATCACATCCAGGGTTGGAATC +
Preference number: 5 (lower is better)
Translates to: AVRQAASWPRLLQSF*TTLMWGGITSRVGI
Trigger: GATTCCAACCCTGGATGTGATGCCTCCCCACATCAGTGTGGTTCAGAAGGACTGTAAAAGACGAGGCCAGGAAGCAGCCTGTCTGACCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp CAGCTTCCGTATAGTCGTAGAGGATCCTTCCGCCAGCACAGGCCCTaGCTTCGTGGTGTTGTCCAAAGCAAAAGTCACAGTCAAGGCCAC +
Preference number: 5 (lower is better)
Translates to: QLPYSRRGSFRQHRP*LRGVVQSKSHSQGH
Trigger: GTGGCCTTGACTGTGACTTTTGCTTTGGACAACACCACGAAGCCAGGGCCTGTGCTGGCGGAAGGATCCTCTACGACTATACGGAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp GCAGCCATGGCAAAGCCAAACCGAGAATCCTGGGAACGGTCTGGCTaGAGGGTTCCTTGGAGCATTAGCAAATTTTGCTGGCCCACCATG +
Preference number: 5 (lower is better)
Translates to: AAMAKPNRESWERSG*RVPWSISKFCWPTM
Trigger: CATGGTGGGCCAGCAAAATTTGCTAATGCTCCAAGGAACCCTTCAGCCAGACCGTTCCCAGGATTCTCGGTTTGGCTTTGCCATGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp ATCCCAACGCCCAGGAGTTTGAGACACTACTTGGAAGCAAAGGGCTaGGGTCAGACAGGCTGCTTCCTGGCCTCGTCTTTTACAGTCCTT +
Preference number: 5 (lower is better)
Translates to: IPTPRSLRHYLEAKG*GQTGCFLASSFTVL
Trigger: AAGGACTGTAAAAGACGAGGCCAGGAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACTCCTGGGCGTTGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp ATTGTGAACCAGCCTCAGCAGCCTGACAGAGATCTCAGTCCCCTTTaGCAGCAGTCCAAGGTGGCACCTTACCACCTGACATCGACTGTT +
Preference number: 5 (lower is better)
Translates to: IVNQPQQPDRDLSPL*QQSKVAPYHLTSTV
Trigger: AACAGTCGATGTCAGGTGGTAAGGTGCCACCTTGGACTGCTGGCAAAGGGGACTGAGATCTCTGTCAGGCTGCTGAGGCTGGTTCACAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATACGCGTCCGGTCTCCTaGTTCTGGGGACCCAGGAAC +
Preference number: 5 (lower is better)
Translates to: GDQERAEKLTAAETPTAHTRPVS*FWGPRN
Trigger: GTTCCTGGGTCCCCAGAACAAGGAGACCGGACGCGT...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp AAGCAGACTCAGAACAGCCTGGGAAGACCGGTTCTCTGGCTGCTGGTCAACTGCCCTGGCTTCGTGGTGTaGTCCAAAGCAAAAGTCACA +
Preference number: 5 (lower is better)
Translates to: KQTQNSLGRPVLWLLVNCPGFVV*SKAKVT
Trigger: TGTGACTTTTGCTTTGGACAACACCACGAAGCCAGG...GCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGAGTCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTGATGTCCATGTCAGCTaGAAGCACCAGGTCTGTGAC +
Preference number: 5 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASDVHVS*KHQVCD
Trigger: GTCACAGACCTGGTGCTTCAAGCTGACATGGACATC...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp ACCACAAATGGGGACTTCCTGGAGCCTCTGATGTCCATGTCAGCTTaGAGCACCAGGTCTGTGACACATTCATTGTCAGGGCCACAGTCC +
Preference number: 5 (lower is better)
Translates to: TTNGDFLEPLMSMSA*STRSVTHSLSGPQS
Trigger: GGACTGTGGCCCTGACAATGAATGTGTCACAGACCTGGTGCTTCAAGCTGACATGGACATCAGAGGCTCCAGGAAGTCCCCATTTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp TTGTTCTCCAGGGTCGCAGACACCAGCACTTTCTGTCGTCCACCTTaGACCACAAATGGGGACTTCCTGGAGCCTCTGATGTCCATGTCA +
Preference number: 5 (lower is better)
Translates to: LFSRVADTSTFCRPP*TTNGDFLEPLMSMS
Trigger: TGACATGGACATCAGAGGCTCCAGGAAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAAAGTGCTGGTGTCTGCGACCCTGGAGAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp CTCACAACTTCTTCCTTTGTTCGGAAGTCTCCCAGGGACCACTCATaGACAGGGTTCTCCCCGTACTGTACCAGTCCTACCTGTATCTGC +
Preference number: 5 (lower is better)
Translates to: LTTSSFVRKSPRDHS*TGFSPYCTSPTCIC
Trigger: GCAGATACAGGTAGGACTGGTACAGTACGGGGAGAACCCTGTGCATGAGTGGTCCCTGGGAGACTTCCGAACAAAGGAAGAAGTTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp CTGTATCCAAATTCGGCCTCTGGTGGCCCTGTGAAGAGTCGTGGGTaGTGTTCATCCAGATTAAAGGAGGAGCAGAGACCTGTCAGCAAC +
Preference number: 5 (lower is better)
Translates to: LYPNSASGGPVKSRG*CSSRLKEEQRPVSN
Trigger: GTTGCTGACAGGTCTCTGCTCCTCCTTTAATCTGGATGAACACCACCCACGACTCTTCACAGGGCCACCAGAGGCCGAATTTGGATACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp GACACTGTATCCAAATTCGGCCTCTGGTGGCCCTGTGAAGAGTCGTaGGTGGTGTTCATCCAGATTAAAGGAGGAGCAGAGACCTGTCAG +
Preference number: 5 (lower is better)
Translates to: DTVSKFGLWWPCEES*VVFIQIKGGAETCQ
Trigger: CTGACAGGTCTCTGCTCCTCCTTTAATCTGGATGAACACCACCCACGACTCTTCACAGGGCCACCAGAGGCCGAATTTGGATACAGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp TGGCTTCGTGGTGTTGTCCAAAGCAAAAGTCACAGTCAAGGCCACTaGCCGGAGGTAATCCGATGTATCCAGTGCATGGAAGTGCAGCTG +
Preference number: 5 (lower is better)
Translates to: WLRGVVQSKSHSQGH*PEVIRCIQCMEVQL
Trigger: CAGCTGCACTTCCATGCACTGGATACATCGGATTACCTCCGGCCAGTGGCCTTGACTGTGACTTTTGCTTTGGACAACACCACGAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp GAGTCCTATAAGGGTGAACCTCATACCGATGCAGAGTGGACTCACTaGAGAACACGAGGTGAGGTTCGTACCGGATGTAGGCAGAGGTCT +
Preference number: 5 (lower is better)
Translates to: ESYKGEPHTDAEWTH*RTRGEVRTGCRQRS
Trigger: AGACCTCTGCCTACATCCGGTACGAACCTCACCTCGTGTTCTCCAGTGAGTCCACTCTGCATCGGTATGAGGTTCACCCTTATAGGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp CCATTGGGAGAGTCCTATAAGGGTGAACCTCATACCGATGCAGAGTaGACTCACTGGAGAACACGAGGTGAGGTTCGTACCGGATGTAGG +
Preference number: 5 (lower is better)
Translates to: PLGESYKGEPHTDAE*THWRTRGEVRTGCR
Trigger: CCTACATCCGGTACGAACCTCACCTCGTGTTCTCCAGTGAGTCCACTCTGCATCGGTATGAGGTTCACCCTTATAGGACTCTCCCAATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGACCACTGTCACAGACTaGAACTTGGCCCTCCGAAAG +
Preference number: 5 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRTTVTD*NLALRK
Trigger: CTTTCGGAGGGCCAAGTTCAAGTCTGTGACAGTGGT...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 90 bp ACCACTGTCACAGACTTGAACTTGGCCCTCCGAAAGAATTCATTGTaGACCAGCCTCAGCAGCCTGACAGAGATCTCAGTCCCCTTTGCC +
Preference number: 5 (lower is better)
Translates to: TTVTDLNLALRKNSL*TSLSSLTEISVPFA
Trigger: GGCAAAGGGGACTGAGATCTCTGTCAGGCTGCTGAGGCTGGTTCACAATGAATTCTTTCGGAGGGCCAAGTTCAAGTCTGTGACAGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TTGACTCCTGGTAATGGGGAAGATAGGGTCCAAAACAAAGAACCTGTGCTAGCTATCTTCCAGGGCAGCTaGTGGTGGGAAAAGGCGGCG +
Preference number: 5 (lower is better)
Translates to: LTPGNGEDRVQNKEPVLAIFQGS*WWEKAA
Trigger: CGCCGCCTTTTCCCACCACAAGCTGCCCTGGAAGAT...AGCTAGCACAGGTTCTTTGTTTTGGACCCTATCTTCCCCATTACCAGGAGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GGCTCCGGAAATTTTAGCATCAAGTCCTGGCCTTGCTCCCAGAGAAGGATGAGGAGTTTGAGACACTACTaGGAAGCAAAGGGCTGCGGT +
Preference number: 5 (lower is better)
Translates to: GSGNFSIKSWPCSQRRMRSLRHY*EAKGCG
Trigger: ACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACT...CCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGAGTTTGAGACACTACTaGGAAGCAAAGGGCTGCGGT +
Preference number: 5 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMSLRHY*EAKGCG
Trigger: ACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACT...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TGGCTCAAAAGTCAAGTCAGGCTGCAGGCCTGGAGACACATGCTGGCAGCATCTTGTTCACAAGTGACATaGCCAACACTAAGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: WLKSQVRLQAWRHMLAASCSQVT*PTLSWS
Trigger: GCTCCAGCTTAGTGTTGGCAATGTCACTTGTGAACA...AGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GCTGTGGAAGCCGTCGGGAAGGGGGACGCACAGGGTGAGGATATTATGTGTTTTTTTCTGTCGTCCACCTaGAACCACAAATGGGGACTT +
Preference number: 5 (lower is better)
Translates to: AVEAVGKGDAQGEDIMCFFLSST*NHKWGL
Trigger: AAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAAA...AAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACGGCTTCCACAGC
52% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 90 bp AGTTTGAGACACTACTTGGAAGCAAAGGGCTGCGGTCAGACAGGCTaGTTCCTGGCCTCGTCTTTTACAGTCCTTCTGAACCACACTGAT +
Preference number: 5 (lower is better)
Translates to: SLRHYLEAKGCGQTG*FLASSFTVLLNHTD
Trigger: ATCAGTGTGGTTCAGAAGGACTGTAAAAGACGAGGCCAGGAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp AAACCTGGTGCGGTGAAAGGGCTTCTTCCTGCCACCGTGAAGCTTTCAGTTACGTCCGACTTAGGTTCCTaGCTGCTCTCACAACTTCTT +
Preference number: 5 (lower is better)
Translates to: KPGAVKGLLPATVKLSVTSDLGS*LLSQLL
Trigger: AAGAAGTTGTGAGAGCAGCAAGGAACCTAAGTCGGA...CGTAACTGAAAGCTTCACGGTGGCAGGAAGAAGCCCTTTCACCGCACCAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTGTTCACAAGTGACATaGCCAACACTAAGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMCSQVT*PTLSWS
Trigger: GCTCCAGCTTAGTGTTGGCAATGTCACTTGTGAACA...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp ACTCTCCCCACCCAGATCTATGAATCACAGGACTCCACGGGAAAGCAGCAGATGGCTTCATCGGTGACATaGAAGAAGAATCGCTCATCT +
Preference number: 5 (lower is better)
Translates to: TLPTQIYESQDSTGKQQMASSVT*KKNRSS
Trigger: AGATGAGCGATTCTTCTTCAATGTCACCGATGAAGC...CATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATACCACTGTCACAGACTaGAACTTGGCCCTCCGAAAG +
Preference number: 5 (lower is better)
Translates to: GDQERAEKLTAAETPTAHTTVTD*NLALRK
Trigger: CTTTCGGAGGGCCAAGTTCAAGTCTGTGACAGTGGT...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 90 bp TTCATCTCTAGGCTACTGCTACTGGCAGTCAGCCTCACAAAGACCTaGCTCAGGAGGAAGGTGCAGCTAAATTCAAACTCTAACAGGAAG +
Preference number: 5 (lower is better)
Translates to: FISRLLLLAVSLTKT*LRRKVQLNSNSNRK
Trigger: CTTCCTGTTAGAGTTTGAATTTAGCTGCACCTTCCTCCTGAGCCAGGTCTTTGTGAGGCTGACTGCCAGTAGCAGTAGCCTAGAGATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CCAAGCCTCCTTTGGATACAGAGTCTCTTGAAAAGGCTGCCAAAGTGGGCTTCTTCTGTGACACATTCATaGTCAGGGCCACAGTCCTTT +
Preference number: 5 (lower is better)
Translates to: PSLLWIQSLLKRLPKWASSVTHS*SGPQSF
Trigger: AAAGGACTGTGGCCCTGACAATGAATGTGTCACAGA...AGAAGCCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCCAAAGGAGGCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TTGACTCCTGGTAATGGGGAAGATAGGGTCCAAAACAAAGAACCTGTGCTAGCTTCACAACTTCTTCCTTaGTTCGGAAGTCTCCCAGGG +
Preference number: 5 (lower is better)
Translates to: LTPGNGEDRVQNKEPVLASQLLP*FGSLPG
Trigger: CCCTGGGAGACTTCCGAACAAAGGAAGAAGTTGTGA...AGCTAGCACAGGTTCTTTGTTTTGGACCCTATCTTCCCCATTACCAGGAGTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATTTTCTGTCGTCCACCTaGAACCACAAATGGGGACTT +
Preference number: 5 (lower is better)
Translates to: GDQERAEKLTAAETPTAHFLSST*NHKWGL
Trigger: AAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAAA...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp CCAAGCCTCCTTTGGATACAGAGTCTCTTGAAAAGGCTGCCAAAGTGGGCTTCTCTGAGCTGTGTTATCTaGAAGGGTCTCATTCATCTC +
Preference number: 5 (lower is better)
Translates to: PSLLWIQSLLKRLPKWASLSCVI*KGLIHL
Trigger: GAGATGAATGAGACCCTTCAAGATAACACAGCTCAG...AGAAGCCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCCAAAGGAGGCTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp ATGAGAATTACACTTACCCATGAACCAAAACATAGGACAAAAGGGAGAGGGTTTAACAGGAAGCTCACCTaGGCCCCAGTCTGGAAGACC +
Preference number: 5 (lower is better)
Translates to: MRITLTHEPKHRTKGRGFNRKLT*APVWKT
Trigger: GGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGTT...AAACCCTCTCCCTTTTGTCCTATGTTTTGGTTCATGGGTAAGTGTAATTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp GGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACAGCACATCTGAGCTGTGTTATCTaGAAGGGTCTCATTCATCTC +
Preference number: 5 (lower is better)
Translates to: GDQERAEKLTAAETPTAHLSCVI*KGLIHL
Trigger: GAGATGAATGAGACCCTTCAAGATAACACAGCTCAG...ATGTGCTGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp AGAAAAGGTGATCAAGAAAGGGCTGAAAAACTCACTGCAGCAGAGACACCTACATCCTCAGTTCCTAACTaGAAGGTGCTGACCACTGTC +
Preference number: 5 (lower is better)
Translates to: RKGDQERAEKLTAAETPTSSVPN*KVLTTV
Trigger: GACAGTGGTCAGCACCTTCAAGTTAGGAACTGAGGA...TGTAGGTGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp AACATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGCCTGGCTTCGTGGTGTaGTCCAAAGCAAAAGTCACA +
Preference number: 5 (lower is better)
Translates to: NIGQKGEGLVNTQFPEKVPGFVV*SKAKVT
Trigger: TGTGACTTTTGCTTTGGACAACACCACGAAGCCAGG...CACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTGATGTCCATGTCAGCTaGAAGCACCAGGTCTGTGAC +
Preference number: 5 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFDVHVS*KHQVCD
Trigger: GTCACAGACCTGGTGCTTCAAGCTGACATGGACATC...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp TATGAATCACAGGACTCCACGGGAAAGCAGCAGATGTTGACTTTTACTTCTTTTTCACAACTTCTTCCTTaGTTCGGAAGTCTCCCAGGG +
Preference number: 5 (lower is better)
Translates to: YESQDSTGKQQMLTFTSFSQLLP*FGSLPG
Trigger: CCCTGGGAGACTTCCGAACAAAGGAAGAAGTTGTGA...AAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS-3UTR CAA 90 bp ATAGGACAAAAGGGAGAGGGTTTAGTCAACACGCAATTTCCAGAAAAGGTGATCGCTTCATCGGTGACATaGAAGAAGAATCGCTCATCT +
Preference number: 5 (lower is better)
Translates to: IGQKGEGLVNTQFPEKVIASSVT*KKNRSS
Trigger: AGATGAGCGATTCTTCTTCAATGTCACCGATGAAGC...GATCACCTTTTCTGGAAATTGCGTGTTGACTAAACCCTCTCCCTTTTGTCCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp CCAACACTAAGCTGGAGCTGCCGAGGGGACAGGCGCTaGCCAGAGCCATCGAATACTGCACGTGCCCCAGCG +
Preference number: 6 (lower is better)
Translates to: PTLSWSCRGDRR*PEPSNTARAPA
Trigger: CGCTGGGGCACGTGCAGTATTCGATGGCTCTGGTCAGCGCCTGTCCCCTCGGCAGCTCCAGCTTAGTGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp GTGGGACAGCGTTGGGCGGTGGGTGCCAGGCTTCCCTaGGGCCGGAATGAAGCATCCACACGGGCACATATT +
Preference number: 6 (lower is better)
Translates to: VGQRWAVGARLP*GRNEASTRAHI
Trigger: AATATGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGGGAAGCCTGGCACCCACCGCCCAACGCTGTCCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp TGGAAGACCGGATGCCCCACGGTGCAGAGCCGGGTATaGGGGGAAGGGACTGCGCACTCCACCTTCACTGAT +
Preference number: 6 (lower is better)
Translates to: WKTGCPTVQSRV*GEGTAHSTFTD
Trigger: ATCAGTGAAGGTGGAGTGCGCAGTCCCTTCCCCCCATACCCGGCTCTGCACCGTGGGGCATCCGGTCTTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp CCCCCAGGACACTGCCAACGAGGATCCACAGGGAGATaGGGGTCGGGTGGGTCTGAATCACCTCCAAGTGAC +
Preference number: 6 (lower is better)
Translates to: PPGHCQRGSTGR*GSGGSESPPSD
Trigger: GTCACTTGGAGGTGATTCAGACCCACCCGACCCTCATCTCCCTGTGGATCCTCGTTGGCAGTGTCCTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp ATCACATCCAGGGTTGGAATCAGGTGGATGATGGGCTaGGAGCTGAACAGAACGGCTGCCCCGTGGGCACCC +
Preference number: 6 (lower is better)
Translates to: ITSRVGIRWMMG*ELNRTAAPWAP
Trigger: GGGTGCCCACGGGGCAGCCGTTCTGTTCAGCTCCCAGCCCATCATCCACCTGATTCCAACCCTGGATGTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp TTGGGCGGTGGGTGCCAGGCTTCCCTGGGGCCGGAATaGAGCATCCACACGGGCACATATTCCAGAACTGAA +
Preference number: 6 (lower is better)
Translates to: LGGGCQASLGPE*SIHTGTYSRTE
Trigger: TTCAGTTCTGGAATATGTGCCCGTGTGGATGCTTCATTCCGGCCCCAGGGAAGCCTGGCACCCACCGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp CATCGACTGTTACTCCCATTCAGTCTGCTTGCATGCTaGAGCTCCTCTGGGTGCACAGGGAAGCCCGGGGGC +
Preference number: 6 (lower is better)
Translates to: HRLLLPFSLLAC*SSSGCTGKPGG
Trigger: GCCCCCGGGCTTCCCTGTGCACCCAGAGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTAACAGTCGATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp TCAAACTCTAACAGGAAGCTCACCTTGGCCCCAGTCTaGAAGACCGGATGCCCCACGGTGCAGAGCCGGGTA +
Preference number: 6 (lower is better)
Translates to: SNSNRKLTLAPV*KTGCPTVQSRV
Trigger: TACCCGGCTCTGCACCGTGGGGCATCCGGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGTTAGAGTTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp ACTCCCATTCAGTCTGCTTGCATGCTGAAGCTCCTCTaGGTGCACAGGGAAGCCCGGGGGCTCAGTCAGGTT +
Preference number: 6 (lower is better)
Translates to: TPIQSACMLKLL*VHREARGLSQV
Trigger: AACCTGACTGAGCCCCCGGGCTTCCCTGTGCACCCAGAGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp AGGAGGAAGGTGCAGCTAAATTCAAACTCTAACAGGAAGCTCACCTaGGCCCCAGTCTGGAAGACCGGATGCCCCACGGTGCAGAGCCGG +
Preference number: 6 (lower is better)
Translates to: RRKVQLNSNSNRKLT*APVWKTGCPTVQSR
Trigger: CCGGCTCTGCACCGTGGGGCATCCGGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGTTAGAGTTTGAATTTAGCTGCACCTTCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp TATAGAGCAACGATAAACATCCCCTCTCCGGTCACCTaGTGGCCCATCCCAGGGGGCACCCACCAGCATCCA +
Preference number: 6 (lower is better)
Translates to: YRATINIPSPVT*WPIPGGTHQHP
Trigger: TGGATGCTGGTGGGTGCCCCCTGGGATGGGCCATCAGGTGACCGGAGAGGGGATGTTTATCGTTGCTCTATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp TGGGTAGGATGCGGCCTGATTCCAGTCTGGGTTCCATaGTACAGGTACAACGCTCCCCGGTGTCCATCCTCC +
Preference number: 6 (lower is better)
Translates to: WVGCGLIPVWVP*YRYNAPRCPSS
Trigger: GGAGGATGGACACCGGGGAGCGTTGTACCTGTATCATGGAACCCAGACTGGAATCAGGCCGCATCCTACCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp CAGCCTCAGCAGCCTGACAGAGATCTCAGTCCCCTTTaGCAGCAGTCCAAGGTGGCACCTTACCACCTGACA +
Preference number: 6 (lower is better)
Translates to: QPQQPDRDLSPL*QQSKVAPYHLT
Trigger: TGTCAGGTGGTAAGGTGCCACCTTGGACTGCTGGCAAAGGGGACTGAGATCTCTGTCAGGCTGCTGAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp CTGAGAGAAAGAGGCGGCGTCCACCGGGAAGAAGCATaGAGGAAACAGAGTAACCCAGGTAGGCCGCATGGT +
Preference number: 6 (lower is better)
Translates to: LRERGGVHREEA*RKQSNPGRPHG
Trigger: ACCATGCGGCCTACCTGGGTTACTCTGTTTCCTCCATGCTTCTTCCCGGTGGACGCCGCCTCTTTCTCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp CTGACTGAACCCTTCTGTGCATGCCACCATGATCGCTaGGGCGGTTCTCGTTTCTCGCCCTTCCCTCCGACT +
Preference number: 6 (lower is better)
Translates to: LTEPFCACHHDR*GGSRFSPFPPT
Trigger: AGTCGGAGGGAAGGGCGAGAAACGAGAACCGCCCAAGCGATCATGGTGGCATGCACAGAAGGGTTCAGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp GATCCTTCCGCCAGCACAGGCCCTGGCTTCGTGGTGTaGTCCAAAGCAAAAGTCACAGTCAAGGCCACTGGC +
Preference number: 6 (lower is better)
Translates to: DPSASTGPGFVV*SKAKVTVKATG
Trigger: GCCAGTGGCCTTGACTGTGACTTTTGCTTTGGACAACACCACGAAGCCAGGGCCTGTGCTGGCGGAAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp GTCCATCCTCCAGGGGTGCCCCCACCGCTACATCAGTaGAACCATCATGGTTCAGATCAGGAAGAGCAGCCA +
Preference number: 6 (lower is better)
Translates to: VHPPGVPPPLHQ*NHHGSDQEEQP
Trigger: TGGCTGCTCTTCCTGATCTGAACCATGATGGTTTCACTGATGTAGCGGTGGGGGCACCCCTGGAGGATGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp CTTGGGCGGTTCTCGTTTCTCGCCCTTCCCTCCGACTTAGGTTCCTaGCTGCTCTCACAACTTCTTCCTTTGTTCGGAAGTCTCCCAGGG +
Preference number: 6 (lower is better)
Translates to: LGRFSFLALPSDLGS*LLSQLLPLFGSLPG
Trigger: CCCTGGGAGACTTCCGAACAAAGGAAGAAGTTGTGAGAGCAGCAAGGAACCTAAGTCGGAGGGAAGGGCGAGAAACGAGAACCGCCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp CAGGCTGCTTCCTGGCCTCGTCTTTTACAGTCCTTCTaGACCACACTGATGTGGGGAGGCATCACATCCAGG +
Preference number: 6 (lower is better)
Translates to: QAASWPRLLQSF*TTLMWGGITSR
Trigger: CCTGGATGTGATGCCTCCCCACATCAGTGTGGTTCAGAAGGACTGTAAAAGACGAGGCCAGGAAGCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp AGGGTCGCAGACACCAGCACTTTCTGTCGTCCACCTTaGACCACAAATGGGGACTTCCTGGAGCCTCTGATG +
Preference number: 6 (lower is better)
Translates to: RVADTSTFCRPP*TTNGDFLEPLM
Trigger: CATCAGAGGCTCCAGGAAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAAAGTGCTGGTGTCTGCGACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp GCACCCACCAGCATCCATCGCTGTCCACCCCCAACATaGTGTAAGACACTGTATCCAAATTCGGCCTCTGGT +
Preference number: 6 (lower is better)
Translates to: APTSIHRCPPPT*CKTLYPNSASG
Trigger: ACCAGAGGCCGAATTTGGATACAGTGTCTTACAGCATGTTGGGGGTGGACAGCGATGGATGCTGGTGGGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp TCTTCCTTTGTTCGGAAGTCTCCCAGGGACCACTCATaGACAGGGTTCTCCCCGTACTGTACCAGTCCTACC +
Preference number: 6 (lower is better)
Translates to: SSFVRKSPRDHS*TGFSPYCTSPT
Trigger: GGTAGGACTGGTACAGTACGGGGAGAACCCTGTGCATGAGTGGTCCCTGGGAGACTTCCGAACAAAGGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp AGTGACCAAGGACCGCAATCCCATAACGTGTCACTCTaGCAGCCTCACAGGCCTTTAGCGCTGCTGGAAGTT +
Preference number: 6 (lower is better)
Translates to: SDQGPQSHNVSL*QPHRPLALLEV
Trigger: AACTTCCAGCAGCGCTAAAGGCCTGTGAGGCTGGCAGAGTGACACGTTATGGGATTGCGGTCCTTGGTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp TTCCGTCCTTATCTGTATCCAACGGGCAGAGCTCGCTaGCAAAGTATGAGCCAATCTGATCCCCCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: FRPYLYPTGRAR*QSMSQSDPPGG
Trigger: GCCTCCAGGGGGATCAGATTGGCTCATACTTTGGCAGCGAGCTCTGCCCGTTGGATACAGATAAGGACGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp CACCTGACATCGACTGTTACTCCCATTCAGTCTGCTTaGATGCTGAAGCTCCTCTGGGTGCACAGGGAAGCC +
Preference number: 6 (lower is better)
Translates to: HLTSTVTPIQSA*MLKLLWVHREA
Trigger: GGCTTCCCTGTGCACCCAGAGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTAACAGTCGATGTCAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp AACCACACTGATGTGGGGAGGCATCACATCCAGGGTTaGAATCAGGTGGATGATGGGCTGGGAGCTGAACAG +
Preference number: 6 (lower is better)
Translates to: NHTDVGRHHIQG*NQVDDGLGAEQ
Trigger: CTGTTCAGCTCCCAGCCCATCATCCACCTGATTCCAACCCTGGATGTGATGCCTCCCCACATCAGTGTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp TCCAGTGCATGGAAGTGCAGCTGTTCACAAGTGACATaGCCAACACTAAGCTGGAGCTGCCGAGGGGACAGG +
Preference number: 6 (lower is better)
Translates to: SSAWKCSCSQVT*PTLSWSCRGDR
Trigger: CCTGTCCCCTCGGCAGCTCCAGCTTAGTGTTGGCAATGTCACTTGTGAACAGCTGCACTTCCATGCACTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp GTGCAGCTAAATTCAAACTCTAACAGGAAGCTCACCTaGGCCCCAGTCTGGAAGACCGGATGCCCCACGGTG +
Preference number: 6 (lower is better)
Translates to: VQLNSNSNRKLT*APVWKTGCPTV
Trigger: CACCGTGGGGCATCCGGTCTTCCAGACTGGGGCCAAGGTGAGCTTCCTGTTAGAGTTTGAATTTAGCTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp CCACCTGACATCGACTGTTACTCCCATTCAGTCTGCTaGCATGCTGAAGCTCCTCTGGGTGCACAGGGAAGC +
Preference number: 6 (lower is better)
Translates to: PPDIDCYSHSVC*HAEAPLGAQGS
Trigger: GCTTCCCTGTGCACCCAGAGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTAACAGTCGATGTCAGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp CTTCCCTCCGACTTAGGTTCCTTGCTGCTCTCACAACTTCTTCCTTaGTTCGGAAGTCTCCCAGGGACCACTCATGCACAGGGTTCTCCC +
Preference number: 6 (lower is better)
Translates to: LPSDLGSLLLSQLLP*FGSLPGTTHAQGSP
Trigger: GGGAGAACCCTGTGCATGAGTGGTCCCTGGGAGACTTCCGAACAAAGGAAGAAGTTGTGAGAGCAGCAAGGAACCTAAGTCGGAGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp GGAATGAAGCATCCACACGGGCACATATTCCAGAACTaGAGACAGAGCTGCCGCAGGCACGAGACCAAAGAG +
Preference number: 6 (lower is better)
Translates to: GMKHPHGHIFQN*RQSCRRHETKE
Trigger: CTCTTTGGTCTCGTGCCTGCGGCAGCTCTGTCTTCAGTTCTGGAATATGTGCCCGTGTGGATGCTTCATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp GATAACTTTTCCTCGATGTCTAAACCTCGGTGCCCCTaGGAGAAAGAGGCGGCGTCCACCGGGAAGAAGCAT +
Preference number: 6 (lower is better)
Translates to: DNFSSMSKPRCP*EKEAASTGKKH
Trigger: ATGCTTCTTCCCGGTGGACGCCGCCTCTTTCTCTCAGGGGCACCGAGGTTTAGACATCGAGGAAAAGTTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp GGGACTGCGCACTCCACCTTCACTGATTTGGCCTTCTaGGGAGTAAGACTGGCCAGGTGGAGGTTTCTAGAA +
Preference number: 6 (lower is better)
Translates to: GTAHSTFTDLAF*GVRLARWRFLE
Trigger: TTCTAGAAACCTCCACCTGGCCAGTCTTACTCCTCAGAAGGCCAAATCAGTGAAGGTGGAGTGCGCAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029744.6
CDS TCA 72 bp CCCTTTGCCAGCAGTCCAAGGTGGCACCTTACCACCTaGCATCGACTGTTACTCCCATTCAGTCTGCTTGCA +
Preference number: 6 (lower is better)
Translates to: PFASSPRWHLTT*HRLLLPFSLLA
Trigger: TGCAAGCAGACTGAATGGGAGTAACAGTCGATGTCAGGTGGTAAGGTGCCACCTTGGACTGCTGGCAAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp GAAGGGACTGCGCACTCCACCTTCACTGATTTGGCCTaGGGAGTAAGACTGGCCAGGTGGAGGTTTCTAGAA +
Preference number: 6 (lower is better)
Translates to: EGTAHSTFTDLA*GVRLARWRFLE
Trigger: TTCTAGAAACCTCCACCTGGCCAGTCTTACTCCTCAGGCCAAATCAGTGAAGGTGGAGTGCGCAGTCCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119365.8
CDS GCA 72 bp ACGGGACCCTTCAAGACCAAAAATTCGGTCCCCCAGTaGATCCACAATGTCTGTCAGCGCAGCTTCATCGGT +
Preference number: 6 (lower is better)
Translates to: TGPFKTKNSVPQ*IHNVCQRSFIG
Trigger: ACCGATGAAGCTGCGCTGACAGACATTGTGGATGCACTGGGGGACCGAATTTTTGGTCTTGAAGGGTCCCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp CACTACTTGGAAGCAAAGGGCTGCGGTCAGACAGGCTaGTTCCTGGCCTCGTCTTTTACAGTCCTTCTGAAC +
Preference number: 6 (lower is better)
Translates to: HYLEAKGCGQTG*FLASSFTVLLN
Trigger: GTTCAGAAGGACTGTAAAAGACGAGGCCAGGAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAAGTAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp AATTCGGCCTCTGGTGGCCCTGTGAAGAGTCGTGGGTaGTGTTCATCCAGATTAAAGGAGGAGCAGAGACCT +
Preference number: 6 (lower is better)
Translates to: NSASGGPVKSRG*CSSRLKEEQRP
Trigger: AGGTCTCTGCTCCTCCTTTAATCTGGATGAACACCACCCACGACTCTTCACAGGGCCACCAGAGGCCGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp TCCAAATTCGGCCTCTGGTGGCCCTGTGAAGAGTCGTaGGTGGTGTTCATCCAGATTAAAGGAGGAGCAGAG +
Preference number: 6 (lower is better)
Translates to: SKFGLWWPCEES*VVFIQIKGGAE
Trigger: CTCTGCTCCTCCTTTAATCTGGATGAACACCACCCACGACTCTTCACAGGGCCACCAGAGGCCGAATTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp CACCAGCACTTTCTGTCGTCCACCTTGAACCACAAATaGGGACTTCCTGGAGCCTCTGATGTCCATGTCAGC +
Preference number: 6 (lower is better)
Translates to: HQHFLSSTLNHK*GLPGASDVHVS
Trigger: GCTGACATGGACATCAGAGGCTCCAGGAAGTCCCCATTTGTGGTTCAAGGTGGACGACAGAAAGTGCTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp AAGGGTGAACCTCATACCGATGCAGAGTGGACTCACTaGAGAACACGAGGTGAGGTTCGTACCGGATGTAGG +
Preference number: 6 (lower is better)
Translates to: KGEPHTDAEWTH*RTRGEVRTGCR
Trigger: CCTACATCCGGTACGAACCTCACCTCGTGTTCTCCAGTGAGTCCACTCTGCATCGGTATGAGGTTCACCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp TCTTCTATCCCAACGCCCAGGAGTTTGAGACACTACTaGGAAGCAAAGGGCTGCGGTCAGACAGGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: SSIPTPRSLRHY*EAKGCGQTGCF
Trigger: GAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACTCCTGGGCGTTGGGATAGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp TATGTAGAATCTTCTATCCCAACGCCCAGGAGTTTGAGACACTACTaGGAAGCAAAGGGCTGCGGTCAGACAGGCTGCTTCCTGGCCTCG +
Preference number: 6 (lower is better)
Translates to: YVESSIPTPRSLRHY*EAKGCGQTGCFLAS
Trigger: CGAGGCCAGGAAGCAGCCTGTCTGACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACTCCTGGGCGTTGGGATAGAAGATTCTACATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp CCTGGCCTCGTCTTTTACAGTCCTTCTGAACCACACTaGTGTGGGGAGGCATCACATCCAGGGTTGGAATCA +
Preference number: 6 (lower is better)
Translates to: PGLVFYSPSEPH*CGEASHPGLES
Trigger: TGATTCCAACCCTGGATGTGATGCCTCCCCACATCAGTGTGGTTCAGAAGGACTGTAAAAGACGAGGCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS GCA 72 bp TTACCACCTGACATCGACTGTTACTCCCATTCAGTCTaGTTGCATGCTGAAGCTCCTCTGGGTGCACAGGGA +
Preference number: 6 (lower is better)
Translates to: LPPDIDCYSHSV*LHAEAPLGAQG
Trigger: TCCCTGTGCACCCAGAGGAGCTTCAGCATGCAAGCAGACTGAATGGGAGTAACAGTCGATGTCAGGTGGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp TATAGTCGTAGAGGATCCTTCCGCCAGCACAGGCCCTaGCTTCGTGGTGTTGTCCAAAGCAAAAGTCACAGT +
Preference number: 6 (lower is better)
Translates to: YSRRGSFRQHRP*LRGVVQSKSHS
Trigger: ACTGTGACTTTTGCTTTGGACAACACCACGAAGCCAGGGCCTGTGCTGGCGGAAGGATCCTCTACGACTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp CTTGAAGGGTCTCATTCATCTCTAGGCTACTGCTACTaGCAGTCAGCCTCACAAAGACCTGGCTCAGGAGGA +
Preference number: 6 (lower is better)
Translates to: LEGSHSSLGYCY*QSASQRPGSGG
Trigger: TCCTCCTGAGCCAGGTCTTTGTGAGGCTGACTGCCAGTAGCAGTAGCCTAGAGATGAATGAGACCCTTCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp GAGTCCTATAAGGGTGAACCTCATACCGATGCAGAGTaGACTCACTGGAGAACACGAGGTGAGGTTCGTACC +
Preference number: 6 (lower is better)
Translates to: ESYKGEPHTDAE*THWRTRGEVRT
Trigger: GGTACGAACCTCACCTCGTGTTCTCCAGTGAGTCCACTCTGCATCGGTATGAGGTTCACCCTTATAGGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp TGGGGACTTCCTGGAGCCTCTGATGTCCATGTCAGCTaGAAGCACCAGGTCTGTGACACATTCATTGTCAGG +
Preference number: 6 (lower is better)
Translates to: WGLPGASDVHVS*KHQVCDTFIVR
Trigger: CCTGACAATGAATGTGTCACAGACCTGGTGCTTCAAGCTGACATGGACATCAGAGGCTCCAGGAAGTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp AACCACAAATGGGGACTTCCTGGAGCCTCTGATGTCCATGTCAGCTaGAAGCACCAGGTCTGTGACACATTCATTGTCAGGGCCACAGTC +
Preference number: 6 (lower is better)
Translates to: NHKWGLPGASDVHVS*KHQVCDTFIVRATV
Trigger: GACTGTGGCCCTGACAATGAATGTGTCACAGACCTGGTGCTTCAAGCTGACATGGACATCAGAGGCTCCAGGAAGTCCCCATTTGTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp GAGGCTTCATTCAGTAGTAGGACACTGCCCTCCTCAGTTCCTAACTaGAAGGTGCTGACCACTGTCACAGACTTGAACTTGGCCCTCCGA +
Preference number: 6 (lower is better)
Translates to: EASFSSRTLPSSVPN*KVLTTVTDLNLALR
Trigger: TCGGAGGGCCAAGTTCAAGTCTGTGACAGTGGTCAGCACCTTCAAGTTAGGAACTGAGGAGGGCAGTGTCCTACTACTGAATGAAGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp GCAAAGCCAAACCGAGAATCCTGGGAACGGTCTGGCTaGAGGGTTCCTTGGAGCATTAGCAAATTTTGCTGG +
Preference number: 6 (lower is better)
Translates to: AKPNRESWERSG*RVPWSISKFCW
Trigger: CCAGCAAAATTTGCTAATGCTCCAAGGAACCCTTCAGCCAGACCGTTCCCAGGATTCTCGGTTTGGCTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp CCCACCATCCCAAAGAGAATCCCATCCTGTAGTCGGTaGATGGAGAAGCCAATCTCAGACATTTCTAGCCCA +
Preference number: 6 (lower is better)
Translates to: PTIPKRIPSCSR*MEKPISDISSP
Trigger: TGGGCTAGAAATGTCTGAGATTGGCTTCTCCATCCACCGACTACAGGATGGGATTCTCTTTGGGATGGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp GGTGTTGTCCAAAGCAAAAGTCACAGTCAAGGCCACTaGCCGGAGGTAATCCGATGTATCCAGTGCATGGAA +
Preference number: 6 (lower is better)
Translates to: GVVQSKSHSQGH*PEVIRCIQCME
Trigger: TTCCATGCACTGGATACATCGGATTACCTCCGGCCAGTGGCCTTGACTGTGACTTTTGCTTTGGACAACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp AGGCTACTGCTACTGGCAGTCAGCCTCACAAAGACCTaGCTCAGGAGGAAGGTGCAGCTAAATTCAAACTCT +
Preference number: 6 (lower is better)
Translates to: RLLLLAVSLTKT*LRRKVQLNSNS
Trigger: AGAGTTTGAATTTAGCTGCACCTTCCTCCTGAGCCAGGTCTTTGTGAGGCTGACTGCCAGTAGCAGTAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp GACTTAGGTTCCTTGCTGCTCTCACAACTTCTTCCTTaGTTCGGAAGTCTCCCAGGGACCACTCATGCACAG +
Preference number: 6 (lower is better)
Translates to: DLGSLLLSQLLP*FGSLPGTTHAQ
Trigger: CTGTGCATGAGTGGTCCCTGGGAGACTTCCGAACAAAGGAAGAAGTTGTGAGAGCAGCAAGGAACCTAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp ATGACGAGACCACTGACCACATGGCAACCAAGATTCTaGACCCTAAGAGTGGTCTTGAATTCAGGGCCAGGA +
Preference number: 6 (lower is better)
Translates to: MTRPLTTWQPRF*TLRVVLNSGPG
Trigger: TCCTGGCCCTGAATTCAAGACCACTCTTAGGGTTCAGAATCTTGGTTGCCATGTGGTCAGTGGTCTCGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS TCA 72 bp TCAGGTTCTGCACCGTGCAGCTTGCATTGCCAGAGATaGCTTGAGATAGTGACAGGAAGTAGTTACCCCCAT +
Preference number: 6 (lower is better)
Translates to: SGSAPCSLHCQR*LEIVTGSSYPH
Trigger: ATGGGGGTAACTACTTCCTGTCACTATCTCAAGTCATCTCTGGCAATGCAAGCTGCACGGTGCAGAACCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CCA 72 bp CTCTGGGCGACCCTCACAACCCCATCTTTCTTTAGCTaGAAGGCGATAACTTTTCCTCGATGTCTAAACCTC +
Preference number: 6 (lower is better)
Translates to: LWATLTTPSFFS*KAITFPRCLNL
Trigger: GAGGTTTAGACATCGAGGAAAAGTTATCGCCTTCCAGCTAAAGAAAGATGGGGTTGTGAGGGTCGCCCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp GTGCATATTCACAGCAGGCTGAGAGGAATTTCCAAGTaGATAGTCACCCAGGTGGCCTTTGGTACATGGAGC +
Preference number: 6 (lower is better)
Translates to: VHIHSRLRGISK*IVTQVAFGTWS
Trigger: GCTCCATGTACCAAAGGCCACCTGGGTGACTATCAACTTGGAAATTCCTCTCAGCCTGCTGTGAATATGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp TTCTCGTTTCTCGCCCTTCCCTCCGACTTAGGTTCCTaGCTGCTCTCACAACTTCTTCCTTTGTTCGGAAGT +
Preference number: 6 (lower is better)
Translates to: FSFLALPSDLGS*LLSQLLPLFGS
Trigger: ACTTCCGAACAAAGGAAGAAGTTGTGAGAGCAGCAAGGAACCTAAGTCGGAGGGAAGGGCGAGAAACGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp TCTTATGTAGAATCTTCTATCCCAACGCCCAGGAGTTaGAGACACTACTTGGAAGCAAAGGGCTGCGGTCAG +
Preference number: 6 (lower is better)
Translates to: SYVESSIPTPRS*RHYLEAKGCGQ
Trigger: CTGACCGCAGCCCTTTGCTTCCAAGTAGTGTCTCAAACTCCTGGGCGTTGGGATAGAAGATTCTACATAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 90 bp CCCAGTGCATCCACAATGTCTGTCAGCGCAGCTTCATCGGTGACATaGAAGAAGAATCGCTCATCTGGATCACTAGCAATAGCTCTGATT +
Preference number: 6 (lower is better)
Translates to: PSASTMSVSAASSVT*KKNRSSGSLAIALI
Trigger: AATCAGAGCTATTGCTAGTGATCCAGATGAGCGATTCTTCTTCAATGTCACCGATGAAGCTGCGCTGACAGACATTGTGGATGCACTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8
CDS CAA 72 bp TCCACAATGTCTGTCAGCGCAGCTTCATCGGTGACATaGAAGAAGAATCGCTCATCTGGATCACTAGCAATA +
Preference number: 6 (lower is better)
Translates to: STMSVSAASSVT*KKNRSSGSLAI
Trigger: TATTGCTAGTGATCCAGATGAGCGATTCTTCTTCAATGTCACCGATGAAGCTGCGCTGACAGACATTGTGGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029744.6
ENSMUST00000119365.8