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Pregenerated sensors for ITGA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042284

Ensembl transcript IDs: ENSMUST00000061673.9

Found 302 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACATCCCTGCATGTTTCCTGCAGCCAGGACCTGCTGCTTCCTGAGTaGGGGCAGCTGGCTTCTCAGATCCAAAGGCTGACCACCAGGATC +
Preference number: 1 (lower is better)
Translates to: TSLHVSCSQDLLLPE*GQLASQIQRLTTRI
Trigger: GATCCTGGTGGTCAGCCTTTGGATCTGAGAAGCCAGCTGCCCTCACTCAGGAAGCAGCAGGTCCTGGCTGCAGGAAACATGCAGGGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 90 bp CAGAACATCCCTGCATGTTTCCTGCAGCCAGGACCTGCTGCTTCCTaGGTGAGGGCAGCTGGCTTCTCAGATCCAAAGGCTGACCACCAG +
Preference number: 1 (lower is better)
Translates to: QNIPACFLQPGPAAS*VRAAGFSDPKADHQ
Trigger: CTGGTGGTCAGCCTTTGGATCTGAGAAGCCAGCTGCCCTCACTCAGGAAGCAGCAGGTCCTGGCTGCAGGAAACATGCAGGGATGTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp GCATGGGACAACCCTGCTGAGGAAGCCCCAGATCAAAGCATCTCCTaGTGGAAGAAGGGAGGAGGGCTGCAAACAGACTCTGGTCCCTGT +
Preference number: 1 (lower is better)
Translates to: AWDNPAEEAPDQSIS*WKKGGGLQTDSGPC
Trigger: ACAGGGACCAGAGTCTGTTTGCAGCCCTCCTCCCTTCTTCCACCAGGAGATGCTTTGATCTGGGGCTTCCTCAGCAGGGTTGTCCCATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp TGGGACAACCCTGCTGAGGAAGCCCCAGATCAAAGCATCTCCTGGTaGAAGAAGGGAGGAGGGCTGCAAACAGACTCTGGTCCCTGTCAT +
Preference number: 1 (lower is better)
Translates to: WDNPAEEAPDQSISW*KKGGGLQTDSGPCH
Trigger: ATGACAGGGACCAGAGTCTGTTTGCAGCCCTCCTCCCTTCTTCCACCAGGAGATGCTTTGATCTGGGGCTTCCTCAGCAGGGTTGTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp AGGGGTCCTGTATTCCCTAGGTCAGATGAGTTAGGGCTCCAGGGTTaGGACATGCCTGACTCACCAAGCTACTCTGTATCTTCCTCAAGG +
Preference number: 1 (lower is better)
Translates to: RGPVFPRSDELGLQG*DMPDSPSYSVSSSR
Trigger: CCTTGAGGAAGATACAGAGTAGCTTGGTGAGTCAGGCATGTCCCAACCCTGGAGCCCTAACTCATCTGACCTAGGGAATACAGGACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp TTCTGGATACTGACAGGTCTTACAGTGGGCAATCAAGTGGAGAGGTaGGTTTGGGGCAGGAGGATCAGCACATTTTACAGCAGTAGTTCA +
Preference number: 1 (lower is better)
Translates to: FWILTGLTVGNQVER*VWGRRISTFYSSSS
Trigger: TGAACTACTGCTGTAAAATGTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGACCTGTCAGTATCCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp ATTTTCCCTCAGGCCACTTTCAGGCCTATGAGTTGGGTAAGGAAGTaGAACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: IFPQATFRPMSWVRK*NSVCVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACACACACACTGTTCCACTTCCTTACCCAACTCATAGGCCTGAAAGTGGCCTGAGGGAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 90 bp TTCCTTTCAGTACAGAATGAATGGGTAGTGGTGGTTTCTGGATTCTaGGTAGATGGAGCTGTGGGGGCCACTGTCCAATTGGAAGTTGGA +
Preference number: 1 (lower is better)
Translates to: FLSVQNEWVVVVSGF*VDGAVGATVQLEVG
Trigger: TCCAACTTCCAATTGGACAGTGGCCCCCACAGCTCCATCTACTCAGAATCCAGAAACCACCACTACCCATTCATTCTGTACTGAAAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 90 bp TCATGTTACATTGAATCTACGTGTGATGGCTTCCCTTGCTGTGGTTaGTCTAAGGAGGAAGAGAAGAACAATACTCCTGTCCCCTCTCCT +
Preference number: 1 (lower is better)
Translates to: SCYIESTCDGFPCCG*SKEEEKNNTPVPSP
Trigger: AGGAGAGGGGACAGGAGTATTGTTCTTCTCTTCCTCCTTAGAGCAACCACAGCAAGGGAAGCCATCACACGTAGATTCAATGTAACATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp GGTGGTATGTTCGGTAGAGAAGTTGCTATGGAAAAACACAGTCCTTaGCAACCAATGGCTGCCATTCAGTGTGTTAACTGTGGACCTACT +
Preference number: 1 (lower is better)
Translates to: GGMFGREVAMEKHSP*QPMAAIQCVNCGPT
Trigger: AGTAGGTCCACAGTTAACACACTGAATGGCAGCCATTGGTTGCCAAGGACTGTGTTTTTCCATAGCAACTTCTCTACCGAACATACCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 90 bp GAGAACAGTCACCCAAGTGGTTGTAAACGTCTTCAGGAAGGATGCTaGATCTCAGAAGTACAATATACTACACACCAACCCTTTGGAGTG +
Preference number: 1 (lower is better)
Translates to: ENSHPSGCKRLQEGC*ISEVQYTTHQPFGV
Trigger: CACTCCAAAGGGTTGGTGTGTAGTATATTGTACTTCTGAGATGCAGCATCCTTCCTGAAGACGTTTACAACCACTTGGGTGACTGTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 90 bp ACAGAGAACAGTCACCCAAGTGGTTGTAAACGTCTTCAGGAAGGATaGTGCATCTCAGAAGTACAATATACTACACACCAACCCTTTGGA +
Preference number: 1 (lower is better)
Translates to: TENSHPSGCKRLQEG*CISEVQYTTHQPFG
Trigger: TCCAAAGGGTTGGTGTGTAGTATATTGTACTTCTGAGATGCAGCATCCTTCCTGAAGACGTTTACAACCACTTGGGTGACTGTTCTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp ACAAAGAAAATATTTAGGGTCTACATTGCCCATGATCCTAGTGCCTaGGAGCCTAGCCTGTCCTTCTGGTATTTGGGTTCATTTCCTTGT +
Preference number: 1 (lower is better)
Translates to: TKKIFRVYIAHDPSA*EPSLSFWYLGSFPC
Trigger: ACAAGGAAATGAACCCAAATACCAGAAGGACAGGCTAGGCTCCCAGGCACTAGGATCATGGGCAATGTAGACCCTAAATATTTTCTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 90 bp CTTAAGTTATCATGTTACATTGAATCTACGTGTGATGGCTTCCCTTaGTGTGGTTGCTCTAAGGAGGAAGAGAAGAACAATACTCCTGTC +
Preference number: 1 (lower is better)
Translates to: LKLSCYIESTCDGFP*CGCSKEEEKNNTPV
Trigger: GACAGGAGTATTGTTCTTCTCTTCCTCCTTAGAGCAACCACAGCAAGGGAAGCCATCACACGTAGATTCAATGTAACATGATAACTTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp ATACAAAAATATCAAACCTTTGACCTCAGGACAGTGTGCAGGATATaGCGTACACAGCGCATTCAAAAGACTCTTTCACACACTCAGCTA +
Preference number: 1 (lower is better)
Translates to: IQKYQTFDLRTVCRI*RTQRIQKTLSHTQL
Trigger: TAGCTGAGTGTGTGAAAGAGTCTTTTGAATGCGCTGTGTACGCCATATCCTGCACACTGTCCTGAGGTCAAAGGTTTGATATTTTTGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 90 bp TGGGTGTACAAGATAAGAAGGAATTATACAAAAATATCAAACCTTTaGCCTCAGGACAGTGTGCAGGATATGGCGTACACAGCGCATTCA +
Preference number: 1 (lower is better)
Translates to: WVYKIRRNYTKISNL*PQDSVQDMAYTAHS
Trigger: TGAATGCGCTGTGTACGCCATATCCTGCACACTGTCCTGAGGTCAAAGGTTTGATATTTTTGTATAATTCCTTCTTATCTTGTACACCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 90 bp CTTAGCCATTATATTCAGTACAAGTTGAAGTTTGATTGTAGCGTGTaGTCACGCGTGTTAACAGACTCTAAACACTGGTCTGCATCTCTA +
Preference number: 1 (lower is better)
Translates to: LSHYIQYKLKFDCSV*SRVLTDSKHWSASL
Trigger: TAGAGATGCAGACCAGTGTTTAGAGTCTGTTAACACGCGTGAGCACACGCTACAATCAAACTTCAACTTGTACTGAATATAATGGCTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 90 bp GAAGGAATTATACAAAAATATCAAACCTTTGACCTCAGGACAGTGTaGAGGATATGGCGTACACAGCGCATTCAAAAGACTCTTTCACAC +
Preference number: 1 (lower is better)
Translates to: EGIIQKYQTFDLRTV*RIWRTQRIQKTLSH
Trigger: GTGTGAAAGAGTCTTTTGAATGCGCTGTGTACGCCATATCCTGCACACTGTCCTGAGGTCAAAGGTTTGATATTTTTGTATAATTCCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 90 bp TTCTACATAGAATTTAAGCTCAACTGCACTATTTTCCAATCACACTaGAAAATACTCTTTCCACCTTATGGGATCCACAAGGTCACCGAG +
Preference number: 1 (lower is better)
Translates to: FYIEFKLNCTIFQSH*KILFPPYGIHKVTE
Trigger: CTCGGTGACCTTGTGGATCCCATAAGGTGGAAAGAGTATTTTCCAGTGTGATTGGAAAATAGTGCAGTTGAGCTTAAATTCTATGTAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 90 bp GCTACTCTGTATCTTCCTCAAGGTTTGTGGTTAAATCTCTTACTCTaGACTTCTACATTCAAGTGCAGTTTTAATACGAAGATGAAAGAC +
Preference number: 1 (lower is better)
Translates to: ATLYLPQGLWLNLLL*TSTFKCSFNTKMKD
Trigger: GTCTTTCATCTTCGTATTAAAACTGCACTTGAATGTAGAAGTTCAGAGTAAGAGATTTAACCACAAACCTTGAGGAAGATACAGAGTAGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 90 bp GGCATGGAGCTAGGAGTGGGGCTGCTGGGCAGGTATGTACTGGAGTaGGGCAGCATGGTAACTGAGCAAGAATCACCCGAGTTCTGTTGG +
Preference number: 2 (lower is better)
Translates to: GMELGVGLLGRYVLE*GSMVTEQESPEFCW
Trigger: CCAACAGAACTCGGGTGATTCTTGCTCAGTTACCATGCTGCCCAACTCCAGTACATACCTGCCCAGCAGCCCCACTCCTAGCTCCATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATCTGAGCCTGGGACATaGGACAGGTCTGGGCCTGGG +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALESEPGT*DRSGPG
Trigger: CCCAGGCCCAGACCTGTCTCATGTCCCAGGCTCAGA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATGGGGGAAGAGTGCTTaGGAGGTCTGGGCAATGAAT +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEWGKSA*EVWAMN
Trigger: ATTCATTGCCCAGACCTCCCAAGCACTCTTCCCCCA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACTCATGGGGTGGGGGTaGAGTTTGCAGTATGCAAGC +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGLMGWG*SLQYAS
Trigger: GCTTGCATACTGCAAACTCCACCCCCACCCCATGAG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAGGAAGTCTTGTCTCATaGGGTGGGGGTGGAGTTTGC +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGGSLVS*GGGGVC
Trigger: GCAAACTCCACCCCCACCCCATGAGACAAGACTTCC...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 90 bp TCTGCACTCAGCCACTGGGCTACACCCAGCCTTGCATGTGGCCTTTaGCAATGGGCTCTGACTTTCCTTTCAGTACAGAATGAATGGGTA +
Preference number: 2 (lower is better)
Translates to: SALSHWATPSLACGL*QWALTFLSVQNEWV
Trigger: TACCCATTCATTCTGTACTGAAAGGAAAGTCAGAGCCCATTGCAAAAGGCCACATGCAAGGCTGGGTGTAGCCCAGTGGCTGAGTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAGTGGTTTCTGGATTCTaGGTAGATGGAGCTGTGGGG +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGVVSGF*VDGAVG
Trigger: CCCCACAGCTCCATCTACTCAGAATCCAGAAACCAC...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGGTGGAGAGGTGGGTTTaGGGCAGGAGGATCAGCACA +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLVERWV*GRRIST
Trigger: TGTGCTGATCCTCCTGCCCCAAACCCACCTCTCCAC...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAAATCAAGTGGAGAGGTaGGTTTGGGGCAGGAGGATC +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGNQVER*VWGRRI
Trigger: GATCCTCCTGCCCCAAACCCACCTCTCCACTTGATT...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGATGGATTCTGAGTAGATaGAGCTGTGGGGGCCACTGT +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGWILSR*SCGGHC
Trigger: ACAGTGGCCCCCACAGCTCCATCTACTCAGAATCCA...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACGTACATGGAGCTATGTaGCCACATCTTTGGCTATAT +
Preference number: 2 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHVHGAM*PHLWLY
Trigger: ATATAGCCAAAGATGTGGTCACATAGCTCCATGTAC...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR GCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAGGGTCTTCTTCAGTTTaGTCATCACTGTGGCAGAAC +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEGSSSV*SSLWQN
Trigger: GTTCTGCCACAGTGATGAGCAAACTGAAGAAGACCC...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR GCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAAAGTACATTTGGGACTaGTGTGGGTGGAACACAGGT +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEKYIWD*CGWNTG
Trigger: ACCTGTGTTCCACCCACAGCAGTCCCAAATGTACTT...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGCAGTGGGCAATCAAGTaGAGAGGTGGGTTTGGGGCA +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLQWAIK*RGGFGA
Trigger: TGCCCCAAACCCACCTCTCCACTTGATTGCCCACTG...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAGAGCCCAGCTCTTTCTaGATACTGACAGGTCTTACA +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEEPSSF*ILTGLT
Trigger: TGTAAGACCTGTCAGTATCCAGAAAGAGCTGGGCTC...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTTAGGGCTCCAGGGTTaGGACATGCCTGACTCACCA +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLLGLQG*DMPDSP
Trigger: TGGTGAGTCAGGCATGTCCCAACCCTGGAGCCCTAA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAGCTGCAAACAGACTCTaGTCCCTGTCATCTTCTACC +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGAANRL*SLSSST
Trigger: GGTAGAAGATGACAGGGACCAGAGTCTGTTTGCAGC...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR GCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAACGTCTTCAGGAAGGATaGTGCATCTCAGAAGTACAA +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALERLQEG*CISEVQ
Trigger: TTGTACTTCTGAGATGCAGCATCCTTCCTGAAGACG...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATTTCTGGGTCACACTTaGTCTGTCTCTTTCCAAGTA +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEFLGHT*SVSFQV
Trigger: TACTTGGAAAGAGACAGATCAAGTGTGACCCAGAAA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAGTCACTCGGAAGATGTaGCCAAGGAGAGATTCTTTA +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGVTRKM*PRRDSL
Trigger: TAAAGAATCTCTCCTTGGTCACATCTTCCGAGTGAC...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGAAGCTGGCGAGAGAGTaGAAATGGAGCGCATCTTTC +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLKLARE*KWSASF
Trigger: GAAAGATGCGCTCCATTTTCACTCTCTCGCCAGCTT...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTGTGTGTTGTGTCTCTaGGTAGCTCTGGCTCTCAAG +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLCVLCL*VALALK
Trigger: CTTGAGAGCCAGAGCTACTCAGAGACACAACACACA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR GCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTGCAATGGGGGAAGAGTaGTTGGGAGGTCTGGGCAAT +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTAMGEE*LGGLGN
Trigger: ATTGCCCAGACCTCCCAAGCACTCTTCCCCCATTGC...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAGTAAGCAATCCTAGATaGATGATGGAGTACATGGAG +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEVSNPR*MMEYME
Trigger: CTCCATGTACTCCATCATCCATCTAGGATTGCTTAC...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATTTGGCCCTGCATCCTaGGAAATAAGTCAACTGTTT +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEFGPAS*EISQLF
Trigger: AAACAGTTGACTTATTTCCCAGGATGCAGGGCCAAA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAACTTCCATTTGAGAAATaGTGGCATGATCAGGCTCTT +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALELPFEK*WHDQAL
Trigger: AAGAGCCTGATCATGCCACCATTTCTCAAATGGAAG...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGGCAATCCTAGATGGATaGTGGAGTACATGGAGCTAT +
Preference number: 2 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQAILDG*WSTWSY
Trigger: ATAGCTCCATGTACTCCATCATCCATCTAGGATTGC...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAGTCATTTACAAATGCTaGGTGTCACTCGGAAGATGT +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGVIYKC*VSLGRC
Trigger: ACATCTTCCGAGTGACACTCAGCATTTGTAAATGAC...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTGGCTTGCTGAGTTTTaGGGAAAGCAGAGCCCAGCT +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTWLAEF*GKQSPA
Trigger: AGCTGGGCTCTGCTTTCCTCAAAACTCAGCAAGCCA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR GCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAAACTGTCTTGATTTCTaGTTCCGCACTGCTCAACAA +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGNCLDF*FRTAQQ
Trigger: TTGTTGAGCAGTGCGGAAGCAGAAATCAAGACAGTT...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATTTTCTCATTTGAACTaGGAGAACCTTTCACCCCAT +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEFSHLN*ENLSPH
Trigger: ATGGGGTGAAAGGTTCTCCCAGTTCAAATGAGAAAA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGCAGAGTAATTTTGCCTaGCTAGGGCATGTTCCAGTC +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLQSNFA*LGHVPV
Trigger: GACTGGAACATGCCCTAGCCAGGCAAAATTACTCTG...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGGAAAAACACAGTCCTTaGCAACCAATGGCTGCCATT +
Preference number: 2 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQEKHSP*QPMAAI
Trigger: AATGGCAGCCATTGGTTGCCAAGGACTGTGTTTTTC...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATTTAGAACTGGCCTTTaGCTGAGGATAGAGAATGTA +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEFRTGL*LRIENV
Trigger: TACATTCTCTATCCTCAGCCAAAGGCCAGTTCTAAA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGTGTGGCCTTTTGCAATaGGCTCTGACTTTCCTTTCA +
Preference number: 2 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQCGLLQ*ALTFLS
Trigger: TGAAAGGAAAGTCAGAGCCCATTGCAAAAGGCCACA...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAAAGTGTTTCAGACACTaGTTTTCATATAAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: FSDPKADHQDLLCGPALEKCFRH*FSYKAG
Trigger: CCCAGCCTTATATGAAAACCAGTGTCTGAAACACTT...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGGGTCTGGGCAATGAATaGGAAGTGCCTAAAATGCTA +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLGLGNE*EVPKML
Trigger: TAGCATTTTAGGCACTTCTCATTCATTGCCCAGACC...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACCAATGCAGTCTTCCTaGAACCTTTATTTGAGAAGA +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGPMQSS*NLYLRR
Trigger: TCTTCTCAAATAAAGGTTTCAGGAAGACTGCATTGG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAAACCCGGCAGGCAAGTaGCTTTTAACATCTTTTTAT +
Preference number: 2 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGNPAGK*LLTSFY
Trigger: ATAAAAAGATGTTAAAAGCCACTTGCCTGCCGGGTT...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGACTACTCAGGAAAGGTaGCATCAGTTTTATTGGGTC +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLTTQER*HQFYWV
Trigger: GACCCAATAAAACTGATGTCACCTTTCCTGAGTAGT...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGATAAGAAAAGAGACCTaGTTGTTGCTCAGTCAGAGT +
Preference number: 2 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQIRKET*LLLSQS
Trigger: ACTCTGACTGAGCAACAATCAGGTCTCTTTTCTTAT...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTGGAACGTCATTTGTTTaGCCCTGCATCCTGGGAAAT +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTGTSFV*PCILGN
Trigger: ATTTCCCAGGATGCAGGGCCAAACAAATGACGTTCC...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTCAGTACAGAATGAATaGGTAGTGGTGGTTTCTGGA +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLSVQNE*VVVVSG
Trigger: TCCAGAAACCACCACTACCCATTCATTCTGTACTGA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTTCTTCTCACATGATTaGGGCAAACCTGAGGATAGA +
Preference number: 2 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLFFSHD*GKPEDR
Trigger: TCTATCCTCAGGTTTGCCTCAATCATGTGAGAAGAA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTAAGTTCAAACTGTCTTaGTTTCTGCTTCCGCACTGC +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTKFKLS*FLLPHC
Trigger: GCAGTGCGGAAGCAGAAATCAAGACAGTTTGAACTT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTACAGACTCTAAACACTaGTCTGCATCTCTACCCATC +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTTDSKH*SASLPI
Trigger: GATGGGTAGAGATGCAGACCAGTGTTTAGAGTCTGT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTAGTTGGGTAAGGAAGTaGAACAGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTSWVRK*NSVCVC
Trigger: ACACACACACACACTGTTCCACTTCCTTACCCAACT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 90 bp GTGGGTGTACAAGATAAGAAGGAATTATACAAAAATATCAAACCTTaGACCTCAGGACAGTGTGCAGGATATGGCGTACACAGCGCATTC +
Preference number: 2 (lower is better)
Translates to: VGVQDKKELYKNIKP*TSGQCAGYGVHSAF
Trigger: GAATGCGCTGTGTACGCCATATCCTGCACACTGTCCTGAGGTCAAAGGTTTGATATTTTTGTATAATTCCTTCTTATCTTGTACACCCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR GCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGGAGATTCTTTATTTATaGTGTGCTGAGAGTAACTGC +
Preference number: 2 (lower is better)
Translates to: LLCGPALEFRISKVFQTLEILYL*CAESNC
Trigger: GCAGTTACTCTCAGCACAGCATAAATAAAGAATCTC...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTGTAGAGAAGTTGCTATaGAAAAACACAGTCCTTGGC +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTVEKLL*KNTVLG
Trigger: GCCAAGGACTGTGTTTTTCCATAGCAACTTCTCTAC...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 90 bp CAGTCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTaGAACTGGGAGAACCTTTCACCCCATTCCCGTGTTGTCATTTAC +
Preference number: 2 (lower is better)
Translates to: QSILYMSLAKESFSH*NWENLSPHSRVVIY
Trigger: GTAAATGACAACACGGGAATGGGGTGAAAGGTTCTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTATAAGGACTCCATCTTaGCTGCCTATTCTACATAGA +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTIRTPS*LPILHR
Trigger: TCTATGTAGAATAGGCAGTCAAGATGGAGTCCTTAT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR TCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTGTTGGAAAACCTGAATaGATGATCTGTTCAGTGAAG +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTVGKPE*MICSVK
Trigger: CTTCACTGAACAGATCATTCATTCAGGTTTTCCAAC...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTGTCCTTCTGGTATTTaGGTTCATTTCCTTGTCTTC +
Preference number: 2 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTCPSGI*VHFLVF
Trigger: GAAGACAAGGAAATGAACCCAAATACCAGAAGGACA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 90 bp CCCAGATTCTTGTATATGTATCAAAGCTTAAGTTATCATGTTACATaGAATCTACGTGTGATGGCTTCCCTTGCTGTGGTTGCTCTAAGG +
Preference number: 2 (lower is better)
Translates to: PRFLYMYQSLSYHVT*NLRVMASLAVVALR
Trigger: CCTTAGAGCAACCACAGCAAGGGAAGCCATCACACGTAGATTCAATGTAACATGATAACTTAAGCTTTGATACATATACAAGAATCTGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 90 bp TTGGCCATTTTCATAGATTACGCTGTTAGAAATCAGATAGGAGTTTaGAGTCCTTGTCTACCCCAGATTCTTGTATATGTATCAAAGCTT +
Preference number: 2 (lower is better)
Translates to: LAIFIDYAVRNQIGV*SPCLPQILVYVSKL
Trigger: AAGCTTTGATACATATACAAGAATCTGGGGTAGACAAGGACTCAAAACTCCTATCTGATTTCTAACAGCGTAATCTATGAAAATGGCCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp GCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACCTaGTGCTTCCTGAGTGAGGGCAGCTGGCTTCTCAGA +
Preference number: 3 (lower is better)
Translates to: AEHPCMFPAART*CFLSEGSWLLR
Trigger: TCTGAGAAGCCAGCTGCCCTCACTCAGGAAGCAGCAGGTCCTGGCTGCAGGAAACATGCAGGGATGTTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp GACACTAGCCTAATCAGCCACAAGAGGCATGTGGCATaGGACAACCCTGCTGAGGAAGCCCCAGATCAAAGC +
Preference number: 3 (lower is better)
Translates to: DTSLISHKRHVA*DNPAEEAPDQS
Trigger: GCTTTGATCTGGGGCTTCCTCAGCAGGGTTGTCCCATGCCACATGCCTCTTGTGGCTGATTAGGCTAGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp TTTGCTCCACAGTGCCAAGTACATTTGGGACTGCTGTaGGTGGAACACAGGTGGTCTCAGGAGGCTTTGGCC +
Preference number: 3 (lower is better)
Translates to: FAPQCQVHLGLL*VEHRWSQEALA
Trigger: GGCCAAAGCCTCCTGAGACCACCTGTGTTCCACCCACAGCAGTCCCAAATGTACTTGGCACTGTGGAGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp TGCACTCAGCCACTGGGCTACACCCAGCCTTGCATGTaGCCTTTTGCAATGGGCTCTGACTTTCCTTTCAGT +
Preference number: 3 (lower is better)
Translates to: CTQPLGYTQPCM*PFAMGSDFPFS
Trigger: ACTGAAAGGAAAGTCAGAGCCCATTGCAAAAGGCCACATGCAAGGCTGGGTGTAGCCCAGTGGCTGAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp GCATGTTCCAGTCCTACAAGTGTAGAAGGGCACTTGTaGGCTGGCCTGCAGTGGAACGTCATTTGTTTGGCC +
Preference number: 3 (lower is better)
Translates to: ACSSPTSVEGHL*AGLQWNVICLA
Trigger: GGCCAAACAAATGACGTTCCACTGCAGGCCAGCTCACAAGTGCCCTTCTACACTTGTAGGACTGGAACATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp CTGACAGGTCTTACAGTGGGCAATCAAGTGGAGAGGTaGGTTTGGGGCAGGAGGATCAGCACATTTTACAGC +
Preference number: 3 (lower is better)
Translates to: LTGLTVGNQVER*VWGRRISTFYS
Trigger: GCTGTAAAATGTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGACCTGTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp CCTTCATTTAGGCGATGCGGAATGGGGAGCCGGAAGTaGAACCGATGCTCCAGGGAAGTAATTCCTAAATGC +
Preference number: 3 (lower is better)
Translates to: PSFRRCGMGSRK*NRCSREVIPKC
Trigger: GCATTTAGGAATTACTTCCCTGGAGCATCGGTTTCACTTCCGGCTCCCCATTCCGCATCGCCTAAATGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp GGTCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTaGGGCAGGAGGATCAGCACATTTTACAGCAGTAGT +
Preference number: 3 (lower is better)
Translates to: GLTVGNQVERWV*GRRISTFYSSS
Trigger: ACTACTGCTGTAAAATGTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp CAGGCCACTTTCAGGCCTATGAGTTGGGTAAGGAAGTaGAACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: QATFRPMSWVRK*NSVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACTGTTCCACTTCCTTACCCAACTCATAGGCCTGAAAGTGGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp GTATTCCCTAGGTCAGATGAGTTAGGGCTCCAGGGTTaGGACATGCCTGACTCACCAAGCTACTCTGTATCT +
Preference number: 3 (lower is better)
Translates to: VFPRSDELGLQG*DMPDSPSYSVS
Trigger: AGATACAGAGTAGCTTGGTGAGTCAGGCATGTCCCAACCCTGGAGCCCTAACTCATCTGACCTAGGGAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp TGGCTGCCATTCAGTGTGTTAACTGTGGACCTACTATaGGTTGACTCCTGGCTTTCCACACAGCCTCTACTG +
Preference number: 3 (lower is better)
Translates to: WLPFSVLTVDLL*VDSWLSTQPLL
Trigger: CAGTAGAGGCTGTGTGGAAAGCCAGGAGTCAACTCATAGTAGGTCCACAGTTAACACACTGAATGGCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp GTACAGAATGAATGGGTAGTGGTGGTTTCTGGATTCTaGGTAGATGGAGCTGTGGGGGCCACTGTCCAATTG +
Preference number: 3 (lower is better)
Translates to: VQNEWVVVVSGF*VDGAVGATVQL
Trigger: CAATTGGACAGTGGCCCCCACAGCTCCATCTACTCAGAATCCAGAAACCACCACTACCCATTCATTCTGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp CCTGCAGTGGAACGTCATTTGTTTGGCCCTGCATCCTaGGAAATAAGTCAACTGTTTTGTCCTGGGGGCAAT +
Preference number: 3 (lower is better)
Translates to: PAVERHLFGPAS*EISQLFCPGGN
Trigger: ATTGCCCCCAGGACAAAACAGTTGACTTATTTCCCAGGATGCAGGGCCAAACAAATGACGTTCCACTGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp TGGGCTACACCCAGCCTTGCATGTGGCCTTTTGCAATaGGCTCTGACTTTCCTTTCAGTACAGAATGAATGG +
Preference number: 3 (lower is better)
Translates to: WATPSLACGLLQ*ALTFLSVQNEW
Trigger: CCATTCATTCTGTACTGAAAGGAAAGTCAGAGCCCATTGCAAAAGGCCACATGCAAGGCTGGGTGTAGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp ACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTaGCCCCTGCTTTATAGTCATGATTCCCTTCCTGGG +
Preference number: 3 (lower is better)
Translates to: TNAKCSHSAECP*PLLYSHDSLPG
Trigger: CCCAGGAAGGGAATCATGACTATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGATTTCAGGCCTATGAGTaGGGTAAGGAAGTGGAACAG +
Preference number: 3 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGFQAYE*GKEVEQ
Trigger: CTGTTCCACTTCCTTACCCAACTCATAGGCCTGAAA...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGTGGACCTACTATGAGTaGACTCCTGGCTTTCCACAC +
Preference number: 3 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQWTYYE*TPGFPH
Trigger: GTGTGGAAAGCCAGGAGTCAACTCATAGTAGGTCCA...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGCTGTCCAATTGGAAGTaGGAGCCCAGGGTACTCATT +
Preference number: 3 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQLSNWK*EPRVLI
Trigger: AATGAGTACCCTGGGCTCCAACTTCCAATTGGACAG...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp GCCATTCAGTGTGTTAACTGTGGACCTACTATGAGTTaGCTCCTGGCTTTCCACACAGCCTCTACTGCAATG +
Preference number: 3 (lower is better)
Translates to: AIQCVNCGPTMS*LLAFHTASTAM
Trigger: CATTGCAGTAGAGGCTGTGTGGAAAGCCAGGAGTCAACTCATAGTAGGTCCACAGTTAACACACTGAATGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp ACAGGGTACCAATGCAGTCTTCCTGAAACCTTTATTTaGGAAGAGCAATGGGGGAAGAGTGCTTGGGAGGTC +
Preference number: 3 (lower is better)
Translates to: TGYQCSLPETFI*EEQWGKSAWEV
Trigger: GACCTCCCAAGCACTCTTCCCCCATTGCTCTTCTCAAATAAAGGTTTCAGGAAGACTGCATTGGTACCCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp GAGGTGGGGATAGACAGTATCTCCAGGGATTACTCATaGACACAGTGGGTTTTCACTCTGATGCCTTCGGAA +
Preference number: 3 (lower is better)
Translates to: EVGIDSISRDYS*TQWVFTLMPSE
Trigger: TTCCGAAGGCATCAGAGTGAAAACCCACTGTGTTCATGAGTAATCCCTGGAGATACTGTCTATCCCCACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp AGGAAGAGAAGAACAATACTCCTGTCCCCTCTCCTCTaGTCTCTCAACTCCATCTCTCTCTGCCTCTTAGAA +
Preference number: 3 (lower is better)
Translates to: RKRRTILLSPLL*SLNSISLCLLE
Trigger: TTCTAAGAGGCAGAGAGAGATGGAGTTGAGAGAGCAGAGGAGAGGGGACAGGAGTATTGTTCTTCTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp AAGATTTTCCCTCAGGCCACTTTCAGGCCTATGAGTTaGGTAAGGAAGTGGAACAGTGTGTGTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: KIFPQATFRPMS*VRKWNSVCVCV
Trigger: CACACACACACACACACTGTTCCACTTCCTTACCCAACTCATAGGCCTGAAAGTGGCCTGAGGGAAAATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp CAAGTACATTTGGGACTGCTGTGGGTGGAACACAGGTaGTCTCAGGAGGCTTTGGCCATTTTCATAGATTAC +
Preference number: 3 (lower is better)
Translates to: QVHLGLLWVEHR*SQEALAIFIDY
Trigger: GTAATCTATGAAAATGGCCAAAGCCTCCTGAGACCACCTGTGTTCCACCCACAGCAGTCCCAAATGTACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAATCCTTATACCAGAGTaGAGAAGCCCCCTACTTAAT +
Preference number: 3 (lower is better)
Translates to: FSDPKADHQDLLCGPALEILIPE*RSPLLN
Trigger: ATTAAGTAGGGGGCTTCTCAACTCTGGTATAAGGAT...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATGTTCGGTAGAGAAGTaGCTATGGAAAAACACAGTC +
Preference number: 3 (lower is better)
Translates to: FSDPKADHQDLLCGPALECSVEK*LWKNTV
Trigger: GACTGTGTTTTTCCATAGCAACTTCTCTACCGAACA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAATCTGTTCAGTGAAGTaGGCATTTGCAGCAAAAGGA +
Preference number: 3 (lower is better)
Translates to: FSDPKADHQDLLCGPALEICSVK*AFAAKG
Trigger: TCCTTTTGCTGCAAATGCCAACTTCACTGAACAGAT...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACTGTCCTTCTGGTATTaGGGTTCATTTCCTTGTCTT +
Preference number: 3 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGLSFWY*GSFPCL
Trigger: AAGACAAGGAAATGAACCCAAATACCAGAAGGACAG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp GTCTTGTCTCATGGGGTGGGGGTGGAGTTTGCAGTATaGAAGCAACAATGTAAACAAACAGAGCTGTTCTCA +
Preference number: 3 (lower is better)
Translates to: VLSHGVGVEFAV*KQQCKQTELFS
Trigger: TGAGAACAGCTCTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAGACAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp TTTCCAATCACACTGGAAAATACTCTTTCCACCTTATaGGATCCACAAGGTCACCGAGTGTCACCCGTGATC +
Preference number: 3 (lower is better)
Translates to: FPITLENTLSTL*DPQGHRVSPVI
Trigger: GATCACGGGTGACACTCGGTGACCTTGTGGATCCCATAAGGTGGAAAGAGTATTTTCCAGTGTGATTGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGAAAGTTCAAACTGTCTaGATTTCTGCTTCCGCACTG +
Preference number: 3 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQKVQTV*ISASAL
Trigger: CAGTGCGGAAGCAGAAATCAAGACAGTTTGAACTTT...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp ATTGAATCTACGTGTGATGGCTTCCCTTGCTGTGGTTaGTCTAAGGAGGAAGAGAAGAACAATACTCCTGTC +
Preference number: 3 (lower is better)
Translates to: IESTCDGFPCCG*SKEEEKNNTPV
Trigger: GACAGGAGTATTGTTCTTCTCTTCCTCCTTAGAGCAACCACAGCAAGGGAAGCCATCACACGTAGATTCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp ACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTaGTCTGTCTCTTTCCAAGTAAGCAATCCTAGATGG +
Preference number: 3 (lower is better)
Translates to: TLYLWVAFLGHT*SVSFQVSNPRW
Trigger: CCATCTAGGATTGCTTACTTGGAAAGAGACAGATCAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp GGAGAGATTCTTTATTTATGCTGTGCTGAGAGTAACTaGTTCACGGAACACGAAGCTCTTTTTGTGCATCCC +
Preference number: 3 (lower is better)
Translates to: GEILYLCCAESN*FTEHEALFVHP
Trigger: GGGATGCACAAAAAGAGCTTCGTGTTCCGTGAAGCAGTTACTCTCAGCACAGCATAAATAAAGAATCTCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp CTCGGAAGATGTGACCAAGGAGAGATTCTTTATTTATaGTGTGCTGAGAGTAACTGCTTCACGGAACACGAA +
Preference number: 3 (lower is better)
Translates to: LGRCDQGEILYL*CAESNCFTEHE
Trigger: TTCGTGTTCCGTGAAGCAGTTACTCTCAGCACAGCATAAATAAAGAATCTCTCCTTGGTCACATCTTCCGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp AAGTTGCTATGGAAAAACACAGTCCTTGGCAACCAATaGCTGCCATTCAGTGTGTTAACTGTGGACCTACTA +
Preference number: 3 (lower is better)
Translates to: KLLWKNTVLGNQ*LPFSVLTVDLL
Trigger: TAGTAGGTCCACAGTTAACACACTGAATGGCAGCCATTGGTTGCCAAGGACTGTGTTTTTCCATAGCAACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATGAAAGTTTTTCTCATTaGAACTGGGAGAACCTTTCA +
Preference number: 3 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYESFSH*NWENLS
Trigger: TGAAAGGTTCTCCCAGTTCAAATGAGAAAAACTTTC...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGCCCAGGGTACTCATTTaGAAGTTGTGTCTACATTTA +
Preference number: 3 (lower is better)
Translates to: LLCGPALEFRISKVFQTLPRVLI*KLCLHL
Trigger: TAAATGTAGACACAACTTCAAAATGAGTACCCTGGG...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp TCATGTTACATTGAATCTACGTGTGATGGCTTCCCTTaGTGTGGTTGCTCTAAGGAGGAAGAGAAGAACAAT +
Preference number: 3 (lower is better)
Translates to: SCYIESTCDGFP*CGCSKEEEKNN
Trigger: ATTGTTCTTCTCTTCCTCCTTAGAGCAACCACAGCAAGGGAAGCCATCACACGTAGATTCAATGTAACATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp ATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTaGGAGAACCTTTCACCCCATTCCCGTGTTGTCATT +
Preference number: 3 (lower is better)
Translates to: MSLAKESFSHLN*ENLSPHSRVVI
Trigger: AATGACAACACGGGAATGGGGTGAAAGGTTCTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp AGCGTGTGCTCACGCGTGTTAACAGACTCTAAACACTaGTCTGCATCTCTACCCATCAATTATTCTAATATG +
Preference number: 3 (lower is better)
Translates to: SVCSRVLTDSKH*SASLPINYSNM
Trigger: CATATTAGAATAATTGATGGGTAGAGATGCAGACCAGTGTTTAGAGTCTGTTAACACGCGTGAGCACACGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTTTATTTGTGTTCCATaGTGTGTTTCCTCAGGAAAG +
Preference number: 3 (lower is better)
Translates to: LLCGPALEFRISKVFQTLFICVP*CVSSGK
Trigger: CTTTCCTGAGGAAACACACAATGGAACACAAATAAA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTGGGTACCTTTTCCTCTaGAAGAACAAGTTGTTGAGT +
Preference number: 3 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTGYLFL*KNKLLS
Trigger: ACTCAACAACTTGTTCTTCAAGAGGAAAAGGTACCC...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp TGTTCCATTGTGTGTTTCCTCAGGAAAGAGAAGACATaGAAAGTTCAGTTGATAGTGGAAGCAACAGTGCTT +
Preference number: 3 (lower is better)
Translates to: CSIVCFLRKEKT*KVQLIVEATVL
Trigger: AAGCACTGTTGCTTCCACTATCAACTGAACTTTGCATGTCTTCTCTTTCCTGAGGAAACACACAATGGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp TCACACACTCAGCTAATTCTAATTATACCTCTCAAATaGTGTCCCCTGGCAGCCAATCCTAGGAATTTCTAT +
Preference number: 3 (lower is better)
Translates to: SHTQLILIIPLK*CPLAANPRNFY
Trigger: ATAGAAATTCCTAGGATTGGCTGCCAGGGGACAGCATTTGAGAGGTATAATTAGAATTAGCTGAGTGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp ATACAAAAATATCAAACCTTTGACCTCAGGACAGTGTaGAGGATATGGCGTACACAGCGCATTCAAAAGACT +
Preference number: 3 (lower is better)
Translates to: IQKYQTFDLRTV*RIWRTQRIQKT
Trigger: AGTCTTTTGAATGCGCTGTGTACGCCATATCCTGCACACTGTCCTGAGGTCAAAGGTTTGATATTTTTGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp TCATTAAGAAACCCTCTGGGCATCACACACATGGTGTaGCTTTTCACTACTTATCATTGTTATGCTACACAG +
Preference number: 3 (lower is better)
Translates to: SLRNPLGITHMV*LFTTYHCYATQ
Trigger: CTGTGTAGCATAACAATGATAAGTAGTGAAAAGCCACACCATGTGTGTGATGCCCAGAGGGTTTCTTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp CAAAATGCCCTTCCTTCAGGTTTTAGAACTGGCCTTTaGCTGAGGATAGAGAATGTAGAATACTTAAGAGCA +
Preference number: 3 (lower is better)
Translates to: QNALPSGFRTGL*LRIENVEYLRA
Trigger: TGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCAAAGGCCAGTTCTAAAACCTGAAGGAAGGGCATTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGCACCCCATTCCCGTGTaGTCATTTACAAATGCTGAG +
Preference number: 3 (lower is better)
Translates to: SILYMSLAKESFSHLNWEHPIPV*SFTNAE
Trigger: CTCAGCATTTGTAAATGACAACACGGGAATGGGGTG...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGCTTTCTGGGTCACACTaGATCTGTCTCTTTCCAAGT +
Preference number: 3 (lower is better)
Translates to: SILYMSLAKESFSHLNWELSGSH*ICLFPS
Trigger: ACTTGGAAAGAGACAGATCAAGTGTGACCCAGAAAG...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp TTGGAGTGTCATTATAGGAAACTGGGTTGGAAAACCTaGATGAATGATCTGTTCAGTGAAGTTGGCATTTGC +
Preference number: 3 (lower is better)
Translates to: LECHYRKLGWKT*MNDLFSEVGIC
Trigger: GCAAATGCCAACTTCACTGAACAGATCATTCATTCAGGTTTTCCAACCCAGTTTCCTATAATGACACTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp GAACTTCTACATTCAAGTGCAGTTTTAATACGAAGATaGAAGACGCCCGTTAGCAAACAAGACACAATGCTG +
Preference number: 3 (lower is better)
Translates to: ELLHSSAVLIRR*KTPVSKQDTML
Trigger: CAGCATTGTGTCTTGTTTGCTAACGGGCGTCTTTCATCTTCGTATTAAAACTGCACTTGAATGTAGAAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR GCA 72 bp GAAGATGAAAGACGCCCGTTAGCAAACAAGACACAATaGTGTAGTTTAATGCCATTGCTTTTTCTCCTAAGA +
Preference number: 3 (lower is better)
Translates to: EDERRPLANKTQ*CSLMPLLFLLR
Trigger: TCTTAGGAGAAAAAGCAATGGCATTAAACTACAGCATTGTGTCTTGTTTGCTAACGGGCGTCTTTCATCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp CATCTCAGAAGTACAATATACTACACACCAACCCTTTaGAGTGTCATTATAGGAAACTGGGTTGGAAAACCT +
Preference number: 3 (lower is better)
Translates to: HLRSTIYYTPTL*SVIIGNWVGKP
Trigger: AGGTTTTCCAACCCAGTTTCCTATAATGACACTCCAAAGGGTTGGTGTGTAGTATATTGTACTTCTGAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CCA 72 bp AATACTGATACACCATGTTCGAAAGCAGTGATTTCTTaGTACAATATAACATTAGCCGGGGAGACTGCTTTT +
Preference number: 3 (lower is better)
Translates to: NTDTPCSKAVIS*YNITLAGETAF
Trigger: AAAAGCAGTCTCCCCGGCTAATGTTATATTGTACCAAGAAATCACTGCTTTCGAACATGGTGTATCAGTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR TCA 72 bp TATCTTCCTCAAGGTTTGTGGTTAAATCTCTTACTCTaGACTTCTACATTCAAGTGCAGTTTTAATACGAAG +
Preference number: 3 (lower is better)
Translates to: YLPQGLWLNLLL*TSTFKCSFNTK
Trigger: CTTCGTATTAAAACTGCACTTGAATGTAGAAGTTCAGAGTAAGAGATTTAACCACAAACCTTGAGGAAGATA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACTACACAGCTCCTGCGTaGTCGTCTTCCAGGGGAGCT +
Preference number: 4 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHYTAPA*SSSRGA
Trigger: AGCTCCCCTGGAAGACGACCACGCAGGAGCTGTGTA...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp CTAGGAGTGGGGCTGCTGGGCAGGTATGTACTGGAGTaGGGCAGCATGGTAACTGAGCAAGAATCACCCGAG +
Preference number: 4 (lower is better)
Translates to: LGVGLLGRYVLE*GSMVTEQESPE
Trigger: CTCGGGTGATTCTTGCTCAGTTACCATGCTGCCCAACTCCAGTACATACCTGCCCAGCAGCCCCACTCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp TCGCCTTATGCGGTGCTTGAGCTGAAACCTAGGGCCTaGCATGAGTTCGCTCTGCACTCAGCCACTGGGCTA +
Preference number: 4 (lower is better)
Translates to: SPYAVLELKPRA*HEFALHSATGL
Trigger: TAGCCCAGTGGCTGAGTGCAGAGCGAACTCATGCAAGGCCCTAGGTTTCAGCTCAAGCACCGCATAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACCCGAGCTTCAGTGAATaGCTCTTTCCTGGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHPSFSE*LFPGCV
Trigger: GACACAGCCAGGAAAGAGGCATTCACTGAAGCTCGG...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGACGACCTGGCCGGTGTaGTTGTACCGAGGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLTTWPV*LYRGCP
Trigger: TGGGCAGCCTCGGTACAATCACACCGGCCAGGTCGT...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACTGGACACATCCAGGGTaGGGTCTGAAACGCATCTTT +
Preference number: 4 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHWTHPG*GLKRIF
Trigger: AAAGATGCGTTTCAGACCTCACCCTGGATGTGTCCA...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAAATGTACACAGCTCCTaGGTGGTCGTCTTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: FSDPKADHQDLLCGPALENVHSS*VVVFQG
Trigger: CCCCTGGAAGACGACCACGCAGGAGCTGTGTACATT...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATCAGCGGCACTCGGCCTaGGAGCCCGTCTTTGGATAT +
Preference number: 4 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYQRHSA*EPVFGY
Trigger: ATATCCAAAGACGGGCTCCCAGGCCGAGTGCCGCTG...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACCGTTTAAAAAGGCAGTaGCACTTTCCCAGGGGTAGA +
Preference number: 4 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHRLKRQ*HFPRGR
Trigger: TCTACCCCTGGGAAAGTGTCACTGCCTTTTTAAACG...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACAGATTTGGAGAATACTaGACCACTGTCCGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHRFGEY*TTVRVL
Trigger: CAACACCCGGACAGTGGTTCAGTATTCTCCAAATCT...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACGATGAGTTTTCACTCTaGAGTTCTCCCCGTATGGTA +
Preference number: 4 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHDEFSL*SSPRMV
Trigger: TACCATACGGGGAGAACTTCAGAGTGAAAACTCATC...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp AGCCACTGGGCTACACCCAGCCTTGCATGTGGCCTTTaGCAATGGGCTCTGACTTTCCTTTCAGTACAGAAT +
Preference number: 4 (lower is better)
Translates to: SHWATPSLACGL*QWALTFLSVQN
Trigger: ATTCTGTACTGAAAGGAAAGTCAGAGCCCATTGCAAAAGGCCACATGCAAGGCTGGGTGTAGCCCAGTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAACCGTCTTTGGATATCTaGATAGCCAGCTCTCGTTTC +
Preference number: 4 (lower is better)
Translates to: FSDPKADHQDLLCGPALEPSLDI*IASSRF
Trigger: GAAACGAGAGCTGGCTATTCAGATATCCAAAGACGG...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACAACCTGTGTCTGTTTaGGGCCAATGTCCATCCTCT +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGQPVSV*GQCPSS
Trigger: AGAGGATGGACATTGGCCCCAAACAGACACAGGTTG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCTACAGCCACATCTCTaGCCCAGAAGAGGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLLQPHL*PRRGQL
Trigger: GAGCTGCCCTCTTCTGGGCCAGAGATGTGGCTGTAG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATTGCCAGCCGAAGTTCTaGCATTGGGAAATGCCCTCT +
Preference number: 4 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYCQPKF*HWEMPS
Trigger: AGAGGGCATTTCCCAATGCCAGAACTTCGGCTGGCA...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp GACATGAGACAGGTCTGGGCCTGGGTCTTCTTCAGTTaGCTCATCACTGTGGCAGAACAGGATAGGAATTTC +
Preference number: 4 (lower is better)
Translates to: DMRQVWAWVFFS*LITVAEQDRNF
Trigger: GAAATTCCTATCCTGTTCTGCCACAGTGATGAGCAAACTGAAGAAGACCCAGGCCCAGACCTGTCTCATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGATGTAGAAGGAGTGCCTaGTGCATTCGGATTCTCGAA +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGCRRSA*CIRILE
Trigger: TTCGAGAATCCGAATGCATCAGGCACTCCTTCTACA...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAAATATGTCCATGGACTaGGTTTGGCAGAGCGTCATC +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGNMSMD*VWQSVI
Trigger: GATGACGCTCTGCCAAACTCAGTCCATGGACATATT...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGCGTACACGTACACCTTaGCCTGTTCCTCTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQRTRTP*PVPLSL
Trigger: CAGAGAAAGAGGAACAGGGCAAGGTGTACGTGTACG...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGTTTTACAGCAGCAACTaGTGTTCCAAAACGGGCCCC +
Preference number: 4 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQFYSSN*CSKTGP
Trigger: GGGGCCCGTTTTGGAACAGCAGTTGCTGCTGTAAAA...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp GAAGATTTTCCCTCAGGCCACTTTCAGGCCTATGAGTaGGGTAAGGAAGTGGAACAGTGTGTGTGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: EDFPSGHFQAYE*GKEVEQCVCVC
Trigger: ACACACACACACACACTGTTCCACTTCCTTACCCAACTCATAGGCCTGAAAGTGGCCTGAGGGAAAATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp CTGCTGTGGGTGGAACACAGGTGGTCTCAGGAGGCTTaGGCCATTTTCATAGATTACGCTGTTAGAAATCAG +
Preference number: 4 (lower is better)
Translates to: LLWVEHRWSQEA*AIFIDYAVRNQ
Trigger: CTGATTTCTAACAGCGTAATCTATGAAAATGGCCAAAGCCTCCTGAGACCACCTGTGTTCCACCCACAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACTCCCTTCGGATTGGTaGCTAAAGTTGATCCAAATG +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGLPSDW*LKLIQM
Trigger: CATTTGGATCAACTTTAGTCACCAATCCGAAGGGAG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAGCTATGGAAAATCGCTaGATGTTTTCATCCTCACAG +
Preference number: 4 (lower is better)
Translates to: FSDPKADHQDLLCGPALEAMENR*MFSSSQ
Trigger: CTGTGAGGATGAAAACATTCAGCGATTTTCCATAGC...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTCAGCGAATCAAGGGTaGCACGGTACTGCAGATCAG +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLSANQG*HGTADQ
Trigger: CTGATCTGCAGTACCGTGTCACCCTTGATTCGCTGA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAGGATTGTGCCTCTTTTaGGAACCTCAGACTTTGATA +
Preference number: 4 (lower is better)
Translates to: FSDPKADHQDLLCGPALEGLCLF*EPQTLI
Trigger: TATCAAAGTCTGAGGTTCTCAAAAGAGGCACAATCC...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACTATGTCAAGCTGTGTaGTACATTCTTGTACAGGGG +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGLCQAV*YILVQG
Trigger: CCCCTGTACAAGAATGTAGCACACAGCTTGACATAG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATGATGAACAGCAGGTCTaGTTAATTGGTTCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYDEQQV*LIGSRL
Trigger: GAGCCTGGAACCAATTAAGCAGACCTGCTGTTCATC...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGCCTGAGGGAATGCGTTaGGCATACTCTTTCCTTATG +
Preference number: 4 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQPEGMR*AYSFLM
Trigger: CATAAGGAAAGAGTATGCGCAACGCATTCCCTCAGG...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCTCCAAGGCCTCCAATaGTCACGTCAGTCAGACCAT +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLLQGLQ*SRQSDH
Trigger: ATGGTCTGACTGACGTGACCATTGGAGGCCTTGGAG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACACGGGCCCATTTTCTaGATCAGTGAGGTTAAAATC +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGHGPIF*ISEVKI
Trigger: GATTTTAACCTCACTGATCCAGAAAATGGGCCCGTG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACAGGAACAGTCTCATTaGCAGCAACTGAAATGTGGT +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGQEQSH*QQLKCG
Trigger: ACCACATTTCAGTTGCTGCCAATGAGACTGTTCCTG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGACCGAAGTTCTGGCATTaGGAAATGCCCTCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGPKFWH*EMPSFS
Trigger: AGAAAAAGAGGGCATTTCCCAATGCCAGAACTTCGG...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCTTCACACAAGGCATTaGTCTCTCTCTCCCAACTGG +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLLHTRH*SLSPNW
Trigger: CCAGTTGGGAGAGAGAGATCAATGCCTTGTGTGAAG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTTCAAACGAAGCTGCTaGCTGGTCAGCTGTAGCTTC +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLFKRSC*LVSCSF
Trigger: GAAGCTACAGCTGACCAGTCAGCAGCTTCGTTTGAA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCATGACCCAGTCCTGTaGATAATGAGCACTGAAGCC +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLHDPVL*IMSTEA
Trigger: GGCTTCAGTGCTCATTATTCACAGGACTGGGTCATG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCTCATTGGCAGCAACTaGAATGTGGTGTTCACTCGC +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLLIGSN*NVVFTR
Trigger: GCGAGTGAACACCACATTTCAGTTGCTGCCAATGAG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATCTTTAGTGGCCTTTTaGAGAATCCAATCTTCCACA +
Preference number: 4 (lower is better)
Translates to: FSDPKADHQDLLCGPALESLVAF*RIQSST
Trigger: TGTGGAAGATTGGATTCTTCAAAAGGCCACTAAAGA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGGCCTATTTTGTTTGCTaGCACCAGGACCTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLAYFVC*HQDLFC
Trigger: ACAGAAGAGGTCCTGGTGGCAGCAAACAAAATAGGC...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTCTCCACTGAGTGTCTaGAGAATGTTGACGTCCCCA +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLSPLSV*RMLTSP
Trigger: TGGGGACGTCAACATTCTGCAGACACTCAGTGGAGA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCAATCTTGCAGGTACTaGAGTCCTGGATTGTGCCTC +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLQSCRY*SPGLCL
Trigger: GAGGCACAATCCAGGACTGCAGTACCTGCAAGATTG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGCTCCAGTTCTTGCTTTaGGTTGGCCAACTAAAGGAG +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLLQFLL*VGQLKE
Trigger: CTCCTTTAGTTGGCCAACCCAAAGCAAGAACTGGAG...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGAGAAGTGCTTTTCGGTaGGCTCACTTGCGATTGATT +
Preference number: 4 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQRSAFR*AHLRLI
Trigger: AATCAATCGCAAGTGAGCCCACCGAAAAGCACTTCT...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATATTATCCTTCAGGGATaGACAGCAGGTCTGCTTAAT +
Preference number: 4 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYIILQG*TAGLLN
Trigger: ATTAAGCAGACCTGCTGTTCATCCCTGAAGGATAAT...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGTTGGTTTCCACAAGATaGGTGAGACATTCACTTGAC +
Preference number: 4 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQLVSTR*VRHSLD
Trigger: GTCAAGTGAATGTCTCACTCATCTTGTGGAAACCAA...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTGCATACTGTTTCTTTaGCCTCCACACGGCAGTTTT +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLCILFL*PPHGSF
Trigger: AAAACTGCCGTGTGGAGGGCAAAGAAACAGTATGCA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGCAAGGCTTCGAGGTCTaGAGTTTACATTATCAGAAG +
Preference number: 4 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQQGFEV*SLHYQK
Trigger: CTTCTGATAATGTAAACTGCAGACCTCGAAGCCTTG...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGATGTTCCCACAGTCTTTaGCAAAAGGAATATGTCCAT +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGCSHSL*QKEYVH
Trigger: ATGGACATATTCCTTTTGCCAAAGACTGTGGGAACA...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATTTGAACTTGTCATTCTaGGATCTGACAATCAGCAGG +
Preference number: 4 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYLNLSF*DLTISR
Trigger: CCTGCTGATTGTCAGATCCCAGAATGACAAGTTCAA...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATTCGTTTTCATACTGTTaGACGGTGTATCCAAACATG +
Preference number: 4 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYSFSYC*TVYPNM
Trigger: CATGTTTGGATACACCGTTCAACAGTATGAAAACGA...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGAACGAGTTCACAACTTaGAATGTAGGGCTGACATCA +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLNEFTT*NVGLTS
Trigger: TGATGTCAGCCCTACATTTCAAGTTGTGAACTCGTT...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGGGGCTCACTTGCGATTaGTTTTATCTCCTCCACAAA +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLGLTCD*FYLLHK
Trigger: TTTGTGGAGGAGATAAAATCAATCGCAAGTGAGCCC...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACGCACTGAAGCCGGTCTaGGACATCTCCATTTCAAAC +
Preference number: 4 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHALKPV*DISISN
Trigger: GTTTGAAATGGAGATGTCTCAGACCGGCTTCAGTGC...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTGTCATTCTGGGATCTaGCAATCAGCAGGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLCHSGI*QSAGSF
Trigger: AAAAGAACCTGCTGATTGTCAGATCCCAGAATGACA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTTCACAGTAGTAACACACAGCAGAACATCCCTGCATGTTTCCTGCAGCCAGGAGATCTCCTCAATTCCTaGAAAAATCAGATTTGGAGA +
Preference number: 4 (lower is better)
Translates to: LHSSNTQQNIPACFLQPGDLLNS*KNQIWR
Trigger: TCTCCAAATCTGATTTTTTCAGGAATTGAGGAGATC...TCCTGGCTGCAGGAAACATGCAGGGATGTTCTGCTGTGTGTTACTACTGTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTATCTGGTTAGCCTTCTaGATGACCACAGTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTIWLAF*MTTVPF
Trigger: GAACGGAACTGTGGTCATGCAGAAGGCTAACCAGAT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATCTTGTTTTCTTTTGTaGATGAATTATCCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: FSDPKADHQDLLCGPALESCFLL*MNYPSG
Trigger: CCCTGAAGGATAATTCATGCACAAAAGAAAACAAGA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTCTGGCATTGGGAAATaGCCTCTTTTTCTAATCGTG +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLSGIGK*PLFLIV
Trigger: CACGATTAGAAAAAGAGGGCATTTCCCAATGCCAGA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTCTCTCTCTCCCAACTaGACACTTATAGACATCTCC +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLSLSPN*TLIDIS
Trigger: GGAGATGTCTATAAGTGTCCAGTTGGGAGAGAGAGA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTACATTATCAGAAGATaGCCATCCAGTTGGGTACAG +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLYIIRR*PSSWVQ
Trigger: CTGTACCCAACTGGATGGTCATCTTCTGATAATGTA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGGAGAACCTCAGACTTTaGTATTGTCATTTTCTTCCC +
Preference number: 4 (lower is better)
Translates to: LLCGPALEFRISKVFQTLENLRL*YCHFLP
Trigger: GGGAAGAAAATGACAATATCAAAGTCTGAGGTTCTC...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGGCAGGTCTGCTTAATTaGTTCCAGGCTCATTTGATA +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLAGLLN*FQAHLI
Trigger: TATCAAATGAGCCTGGAACCAATTAAGCAGACCTGC...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGCATACTCTTTCCTTATaGTCTTGCCACTGCCATGAT +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLHTLSL*SCHCHD
Trigger: ATCATGGCAGTGGCAAGACCATAAGGAAAGAGTATG...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACGCAGCAACTGAAATGTaGTGTTCACTCGCAGAACTG +
Preference number: 4 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHAATEM*CSLAEL
Trigger: CAGTTCTGCGAGTGAACACCACATTTCAGTTGCTGC...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp TTTCATGTGAAACTGGTGGTATGTTCGGTAGAGAAGTaGCTATGGAAAAACACAGTCCTTGGCAACCAATGG +
Preference number: 4 (lower is better)
Translates to: FHVKLVVCSVEK*LWKNTVLGNQW
Trigger: CCATTGGTTGCCAAGGACTGTGTTTTTCCATAGCAACTTCTCTACCGAACATACCACCAGTTTCACATGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGGACCTCTTCTGTGGATaGATACTTATTGAGGTTGAA +
Preference number: 4 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLDLFCG*ILIEVE
Trigger: TTCAACCTCAATAAGTATTCATCCACAGAAGAGGTC...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp TTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTaGAACTGGGAGAACCTTTCACCCCATTCCCGTGTT +
Preference number: 4 (lower is better)
Translates to: LYMSLAKESFSH*NWENLSPHSRV
Trigger: AACACGGGAATGGGGTGAAAGGTTCTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp GCATCTCAGAAGTACAATATACTACACACCAACCCTTaGGAGTGTCATTATAGGAAACTGGGTTGGAAAACC +
Preference number: 4 (lower is better)
Translates to: ASQKYNILHTNP*ECHYRKLGWKT
Trigger: GGTTTTCCAACCCAGTTTCCTATAATGACACTCCAAAGGGTTGGTGTGTAGTATATTGTACTTCTGAGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTTATGGTCTTGCCACTaGCATGATAAATGTACACAG +
Preference number: 4 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTLWSCH*HDKCTQ
Trigger: CTGTGTACATTTATCATGGCAGTGGCAAGACCATAA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGAACGAAGCTGCTGACTaGTCAGCTGTAGCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: SILYMSLAKESFSHLNWENEAAD*SAVASK
Trigger: TTTGGAAGCTACAGCTGACCAGTCAGCAGCTTCGTT...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTCGCAGCTATCTTTTTaGATCTCCTCAATTCCTGAA +
Preference number: 4 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTSQLSF*ISSIPE
Trigger: TTCAGGAATTGAGGAGATCCAAAAAGATAGCTGCGA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGAAAGGAATATGTCCATaGACTGAGTTTGGCAGAGCG +
Preference number: 4 (lower is better)
Translates to: SILYMSLAKESFSHLNWEKGICP*TEFGRA
Trigger: CGCTCTGCCAAACTCAGTCCATGGACATATTCCTTT...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CCA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGCATCTGACGTCAGATTaGGAAATGAAATTGCCAGCC +
Preference number: 4 (lower is better)
Translates to: SILYMSLAKESFSHLNWEHLTSD*EMKLPA
Trigger: GGCTGGCAATTTCATTTCCCAATCTGACGTCAGATG...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR TCA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGTTTCCACAAGATGAGTaGGACATTCACTTGACTCAC +
Preference number: 4 (lower is better)
Translates to: SILYMSLAKESFSHLNWEFPQDE*DIHLTH
Trigger: GTGAGTCAAGTGAATGTCTCACTCATCTTGTGGAAA...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp TTAAAAATATTTCCCATTGCTTTCTACACTGTATCTTaGGGTAGCCTTTCTGGGTCACACTTGATCTGTCTC +
Preference number: 4 (lower is better)
Translates to: LKIFPIAFYTVS*GSLSGSHLICL
Trigger: GAGACAGATCAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAATATTTTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR GCA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACCTCATGTGTTACATTTaGTCCATATTGTACAATTCC +
Preference number: 4 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHLMCYI*SILYNS
Trigger: GGAATTGTACAATATGGAGCAAATGTAACACATGAG...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
3UTR CAA 72 bp TTCATAGATTACGCTGTTAGAAATCAGATAGGAGTTTaGAGTCCTTGTCTACCCCAGATTCTTGTATATGTA +
Preference number: 4 (lower is better)
Translates to: FIDYAVRNQIGV*SPCLPQILVYV
Trigger: TACATATACAAGAATCTGGGGTAGACAAGGACTCAAAACTCCTATCTGATTTCTAACAGCGTAATCTATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp TCCCGCAAAGGCGCTCAGGAGGATAACCCACAGCGGCACTCGGCCTaGGAGCCCGTCTTTGGATATCTGAATAGCCAGCTCTCGTTTCCG +
Preference number: 5 (lower is better)
Translates to: SRKGAQEDNPQRHSA*EPVFGYLNSQLSFP
Trigger: CGGAAACGAGAGCTGGCTATTCAGATATCCAAAGACGGGCTCCCAGGCCGAGTGCCGCTGTGGGTTATCCTCCTGAGCGCCTTTGCGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 90 bp ATAACCCACAGCGGCACTCGGCCTGGGAGCCCGTCTTTGGATATCTaGATAGCCAGCTCTCGTTTCCGGTTGCTGCTGCTTAAAGTCAGC +
Preference number: 5 (lower is better)
Translates to: ITHSGTRPGSPSLDI*IASSRFRLLLLKVS
Trigger: GCTGACTTTAAGCAGCAGCAACCGGAAACGAGAGCTGGCTATTCAGATATCCAAAGACGGGCTCCCAGGCCGAGTGCCGCTGTGGGTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp CCACATCTCTGGCCCAGAAGAGGGCAGCTCCTCCAAGGCCTCCAATaGTCACGTCAGTCAGACCATCGCCATTTAAATCCATCTCTCCGT +
Preference number: 5 (lower is better)
Translates to: PHLWPRRGQLLQGLQ*SRQSDHRHLNPSLR
Trigger: ACGGAGAGATGGATTTAAATGGCGATGGTCTGACTGACGTGACCATTGGAGGCCTTGGAGGAGCTGCCCTCTTCTGGGCCAGAGATGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp TGTACCGAGGCTGCCCAGCGATATAGAGCACATCTCCCGGGATGGTaGCAGAGTTCACTGTGTAACCCAAGTAAGAAGCAAGAGGCTCGT +
Preference number: 5 (lower is better)
Translates to: CTEAAQRYRAHLPGW*QSSLCNPSKKQEAR
Trigger: ACGAGCCTCTTGCTTCTTACTTGGGTTACACAGTGAACTCTGCCACCATCCCGGGAGATGTGCTCTATATCGCTGGGCAGCCTCGGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp GATTGTACCGAGGCTGCCCAGCGATATAGAGCACATCTCCCGGGATaGTGGCAGAGTTCACTGTGTAACCCAAGTAAGAAGCAAGAGGCT +
Preference number: 5 (lower is better)
Translates to: DCTEAAQRYRAHLPG*WQSSLCNPSKKQEA
Trigger: AGCCTCTTGCTTCTTACTTGGGTTACACAGTGAACTCTGCCACCATCCCGGGAGATGTGCTCTATATCGCTGGGCAGCCTCGGTACAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACCTTGGTGGGCTCAGTTaGAAAGGTGGTGTTATGAGG +
Preference number: 5 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHLGGLS*KGGVMR
Trigger: CCTCATAACACCACCTTTCAAACTGAGCCCACCAAG...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp TCCCATCCCCACCTGAGGGAATGCGTTGCGCATACTCTTTCCTTATaGTCTTGCCACTGCCATGATAAATGTACACAGCTCCTGCGTGGT +
Preference number: 5 (lower is better)
Translates to: SHPHLRECVAHTLSL*SCHCHDKCTQLLRG
Trigger: ACCACGCAGGAGCTGTGTACATTTATCATGGCAGTGGCAAGACCATAAGGAAAGAGTATGCGCAACGCATTCCCTCAGGTGGGGATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAAGCGTACACGTACACCTaGCCCTGTTCCTCTTTCTCT +
Preference number: 5 (lower is better)
Translates to: FSDPKADHQDLLCGPALEAYTYT*PCSSFS
Trigger: AGAGAAAGAGGAACAGGGCAAGGTGTACGTGTACGC...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS GCA 90 bp TTTGATATTCAAACCTCGTCTGATTCACAGCGTACACGTACACCTTaGCCTGTTCCTCTTTCTCTGTCCCCATATACATGGGAGCCCCGA +
Preference number: 5 (lower is better)
Translates to: FDIQTSSDSQRTRTP*PVPLSLSPYTWEPR
Trigger: TCGGGGCTCCCATGTATATGGGGACAGAGAAAGAGGAACAGGGCAAGGTGTACGTGTACGCTGTGAATCAGACGAGGTTTGAATATCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGGCCGAAGTTCTGGCATaGGGAAATGCCCTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQAEVLA*GNALFF
Trigger: GAAAAAGAGGGCATTTCCCAATGCCAGAACTTCGGC...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCTTACAGTGGGCAATCAAGTGGAGAGGTGGGTTTGGGGCAGGAGGATCAGCACTACATTTGCTCCATATaGTACAATTCCAACCTGTGT +
Preference number: 5 (lower is better)
Translates to: SYSGQSSGEVGLGQEDQHYICSI*YNSNLC
Trigger: ACACAGGTTGGAATTGTACAATATGGAGCAAATGTA...GTGCTGATCCTCCTGCCCCAAACCCACCTCTCCACTTGATTGCCCACTGTAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATGAAACGCATCTTTCCTaGTTCCCACAGTCTTTGGCA +
Preference number: 5 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYETHLS*FPQSLA
Trigger: TGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTC...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGCTGTCTCCCTTGTTTTaGACGGTGAGGCTGACATTG +
Preference number: 5 (lower is better)
Translates to: LLCGPALEFRISKVFQTLLSPLF*TVRLTL
Trigger: CAATGTCAGCCTCACCGTCAAAAACAAGGGAGACAG...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGTCAGGAACAGTCTCATaGGCAGCAACTGAAATGTGG +
Preference number: 5 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQSGTVS*AATEMW
Trigger: CCACATTTCAGTTGCTGCCAATGAGACTGTTCCTGA...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TTCTCAGATCCAAAGGCTGACCACCAGGATCTCCTTTGTGGACCGGCTCTAGAATGGATTGTGCCTCTTTaGAGAACCTCAGACTTTGAT +
Preference number: 5 (lower is better)
Translates to: FSDPKADHQDLLCGPALEWIVPL*RTSDFD
Trigger: ATCAAAGTCTGAGGTTCTCAAAAGAGGCACAATCCA...TTCTAGAGCCGGTCCACAAAGGAGATCCTGGTGGTCAGCCTTTGGATCTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 90 bp CTTGGTGGAATTAATCAGCTCAGGAACAGTCTCATTGGCAGCAACTaGAATGTGGTGTTCACTCGCAGAACTGTAAAACTGCAGTCCGAC +
Preference number: 5 (lower is better)
Translates to: LGGINQLRNSLIGSN*NVVFTRRTVKLQSD
Trigger: GTCGGACTGCAGTTTTACAGTTCTGCGAGTGAACACCACATTTCAGTTGCTGCCAATGAGACTGTTCCTGAGCTGATTAATTCCACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACCCAACCTGTGTCTGTTaGGGGCCAATGTCCATCCTC +
Preference number: 5 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHPTCVC*GPMSIL
Trigger: GAGGATGGACATTGGCCCCAAACAGACACAGGTTGG...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATAACGGTGAGGTTTCTTaGAATCCTCCTTTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYNGEVS*NPPFLS
Trigger: ACTCAGGAAAGGAGGATTCAAAGAAACCTCACCGTT...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTACGCACTGTCTCCCTaGTTTTTGACGGTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTYALSP*FLTVRL
Trigger: CAGCCTCACCGTCAAAAACAAGGGAGACAGTGCGTA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 90 bp GGAGAACCAATAAGAACCCATTTGCCTTCTTCGTTTTCATACTGTTaGACGGTGTATCCAAACATGTCCTCCACTGGACCACTGAAGCTC +
Preference number: 5 (lower is better)
Translates to: GEPIRTHLPSSFSYC*TVYPNMSSTGPLKL
Trigger: GAGCTTCAGTGGTCCAGTGGAGGACATGTTTGGATACACCGTTCAACAGTATGAAAACGAAGAAGGCAAATGGGTTCTTATTGGTTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS GCA 90 bp TTAACAATAGTGACCAGGGCCAACTCATCTGAGACGTTGAAGAAGTaGTTTTCGGTGGGCTCACTTGCGATTGATTTTATCTCCTCCACA +
Preference number: 5 (lower is better)
Translates to: LTIVTRANSSETLKK*FSVGSLAIDFISST
Trigger: TGTGGAGGAGATAAAATCAATCGCAAGTGAGCCCACCGAAAAGCACTTCTTCAACGTCTCAGATGAGTTGGCCCTGGTCACTATTGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp TCTCCCTTGTTTTTGACGGTGAGGCTGACATTGAACTTGTCATTCTaGGATCTGACAATCAGCAGGTTCTTTTCTGTTGTGGACACATCC +
Preference number: 5 (lower is better)
Translates to: SPLFLTVRLTLNLSF*DLTISRFFSVVDTS
Trigger: GGATGTGTCCACAACAGAAAAGAACCTGCTGATTGTCAGATCCCAGAATGACAAGTTCAATGTCAGCCTCACCGTCAAAAACAAGGGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp AACACAAACGCCAAATGTAGTCACAGTGCTGAGTGTCCTTGGCCCCTGCTTTATAAGCTCATGGAGTTTTaGACATCAACGTTGAAGGAG +
Preference number: 5 (lower is better)
Translates to: NTNAKCSHSAECPWPLLYKLMEF*TSTLKE
Trigger: CTCCTTCAACGTTGATGTCAAAAACTCCATGAGCTT...ATAAAGCAGGGGCCAAGGACACTCAGCACTGTGACTACATTTGGCGTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TTTCCCATTGCTTTCTACACTGTATCTTTGGGTAGCCTTTCTGGGTCACACTTGTCTCCAGTTCTTGCTTaGGGTTGGCCAACTAAAGGA +
Preference number: 5 (lower is better)
Translates to: FPIAFYTVSLGSLSGSHLSPVLA*GWPTKG
Trigger: TCCTTTAGTTGGCCAACCCAAAGCAAGAACTGGAGA...CAAGTGTGACCCAGAAAGGCTACCCAAAGATACAGTGTAGAAAGCAATGGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTTCATCCTCACAGTCTaGGATGACCTGTTTCAGGCG +
Preference number: 5 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTFILTV*DDLFQA
Trigger: CGCCTGAAACAGGTCATCCAAGACTGTGAGGATGAA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 90 bp CCTGCGGCCTATTTTGTTTGCTGCCACCAGGACCTCTTCTGTGGATaGATACTTATTGAGGTTGAACTCATGTGTTACATTTGCTCCATA +
Preference number: 5 (lower is better)
Translates to: PAAYFVCCHQDLFCG*ILIEVELMCYICSI
Trigger: TATGGAGCAAATGTAACACATGAGTTCAACCTCAATAAGTATTCATCCACAGAAGAGGTCCTGGTGGCAGCAAACAAAATAGGCCGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp CTCCTTTGTGGACCGGCTCTAGAATTCAGAATCTCCAAAGTGTTTCAGACACTGTTGTTCCCACAGTCTTaGGCAAAAGGAATATGTCCA +
Preference number: 5 (lower is better)
Translates to: LLCGPALEFRISKVFQTLLFPQS*AKGICP
Trigger: TGGACATATTCCTTTTGCCAAAGACTGTGGGAACAA...CAGTGTCTGAAACACTTTGGAGATTCTGAATTCTAGAGCCGGTCCACAAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 90 bp TTCGTTTTCATACTGTTGAACGGTGTATCCAAACATGTCCTCCACTaGACCACTGAAGCTCATGGAGTTTTTGACATCAACGTTGAAGGA +
Preference number: 5 (lower is better)
Translates to: FVFILLNGVSKHVLH*TTEAHGVFDINVEG
Trigger: TCCTTCAACGTTGATGTCAAAAACTCCATGAGCTTCAGTGGTCCAGTGGAGGACATGTTTGGATACACCGTTCAACAGTATGAAAACGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTGGTTCCAGGCTCATTaGATATTCAAACCTCGTCTG +
Preference number: 5 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTWFQAH*IFKPRL
Trigger: CAGACGAGGTTTGAATATCAAATGAGCCTGGAACCA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTTTAAAGCCATCCACGTaGAGGTCTTTTACAGCAGCA +
Preference number: 5 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTLKPST*RSFTAA
Trigger: TGCTGCTGTAAAAGACCTCAACGTGGATGGCTTTAA...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp CTCATGGGGTGGGGGTGGAGTTTGCAGTATGCAAGCAACAATGTAAACAAACAGACGGCAGTTTTTCTTTaGAATATTCACTTTGTTGGG +
Preference number: 5 (lower is better)
Translates to: LMGWGWSLQYASNNVNKQTAVFL*NIHFVG
Trigger: CCCAACAAAGTGAATATTCAAAAGAAAAACTGCCGT...CTGTTTGTTTACATTGTTGCTTGCATACTGCAAACTCCACCCCCACCCCATGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACATGCATACTGTTTCTTaGCCCTCCACACGGCAGTTT +
Preference number: 5 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHMHTVS*PSTRQF
Trigger: AAACTGCCGTGTGGAGGGCAAAGAAACAGTATGCAT...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTAGGCTGACATTGAACTaGTCATTCTGGGATCTGACA +
Preference number: 5 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTRLTLN*SFWDLT
Trigger: TGTCAGATCCCAGAATGACAAGTTCAATGTCAGCCT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TGGCTGAGGATAGAGAATGTAGAATACTTAAGAGCAGTAGCCGAAGGTCTAACTATTTTCTTCCCAGAGTaGATACCCAAAGGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: WLRIENVEYLRAVAEGLTIFFPE*IPKGSS
Trigger: TGAGGACCCTTTGGGTATCAACTCTGGGAAGAAAAT...AGTTAGACCTTCGGCTACTGCTCTTAAGTATTCTACATTCTCTATCCTCAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACAATCCTCCCTTCGGATaGGTGACTAAAGTTGATCCA +
Preference number: 5 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHNPPFG*VTKVDP
Trigger: TGGATCAACTTTAGTCACCAATCCGAAGGGAGGATT...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGACGGTGAGGCTGACATaGAACTTGTCATTCTGGGAT +
Preference number: 5 (lower is better)
Translates to: SILYMSLAKESFSHLNWETVRLT*NLSFWD
Trigger: ATCCCAGAATGACAAGTTCAATGTCAGCCTCACCGT...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGTTTCGGTGGGCTCACTaGCGATTGATTTTATCTCCT +
Preference number: 5 (lower is better)
Translates to: SILYMSLAKESFSHLNWEFRWAH*RLILSP
Trigger: AGGAGATAAAATCAATCGCAAGTGAGCCCACCGAAA...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TATTGGGTCATCTATGTATGCTCATGTTTCATTAAGAAACCCTCTGGGCATCACTTCGTTTTCATACTGTaGAACGGTGTATCCAAACAT +
Preference number: 5 (lower is better)
Translates to: YWVIYVCSCFIKKPSGHHFVFIL*NGVSKH
Trigger: ATGTTTGGATACACCGTTCAACAGTATGAAAACGAA...GTGATGCCCAGAGGGTTTCTTAATGAAACATGAGCATACATAGATGACCCAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGCCTCAGACTTTGATATaGTCATTTTCTTCCCAGAGT +
Preference number: 5 (lower is better)
Translates to: SILYMSLAKESFSHLNWEPQTLI*SFSSQS
Trigger: ACTCTGGGAAGAAAATGACAATATCAAAGTCTGAGG...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGTTCTTTAGTGGCCTTTaGAAGAATCCAATCTTCCAC +
Preference number: 5 (lower is better)
Translates to: SILYMSLAKESFSHLNWEFFSGL*KNPIFH
Trigger: GTGGAAGATTGGATTCTTCAAAAGGCCACTAAAGAA...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS-3UTR CAA 90 bp TCCATATTGTATATGAGCTTGGCTAAGGAAAGTTTTTCTCATTTGAACTGGGAGGTGGATGAATACTTATaGAGGTTGAACTCATGTGTT +
Preference number: 5 (lower is better)
Translates to: SILYMSLAKESFSHLNWEVDEYL*RLNSCV
Trigger: AACACATGAGTTCAACCTCAATAAGTATTCATCCAC...CTCCCAGTTCAAATGAGAAAAACTTTCCTTAGCCAAGCTCATATACAATATGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp GGCGCTCAGGAGGATAACCCACAGCGGCACTCGGCCTaGGAGCCCGTCTTTGGATATCTGAATAGCCAGCTC +
Preference number: 6 (lower is better)
Translates to: GAQEDNPQRHSA*EPVFGYLNSQL
Trigger: GAGCTGGCTATTCAGATATCCAAAGACGGGCTCCCAGGCCGAGTGCCGCTGTGGGTTATCCTCCTGAGCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp TTCCTGGCTGTGTCTATTCCAAGGGCTGTCATCGTCTaGAGACCACCCCTGCGGCCTATTTTGTTTGCTGCC +
Preference number: 6 (lower is better)
Translates to: FLAVSIPRAVIV*RPPLRPILFAA
Trigger: GGCAGCAAACAAAATAGGCCGCAGGGGTGGTCTCCAGACGATGACAGCCCTTGGAATAGACACAGCCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp TGGCCCAGAAGAGGGCAGCTCCTCCAAGGCCTCCAATaGTCACGTCAGTCAGACCATCGCCATTTAAATCCA +
Preference number: 6 (lower is better)
Translates to: WPRRGQLLQGLQ*SRQSDHRHLNP
Trigger: TGGATTTAAATGGCGATGGTCTGACTGACGTGACCATTGGAGGCCTTGGAGGAGCTGCCCTCTTCTGGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp GAGGCTGCCCAGCGATATAGAGCACATCTCCCGGGATaGTGGCAGAGTTCACTGTGTAACCCAAGTAAGAAG +
Preference number: 6 (lower is better)
Translates to: EAAQRYRAHLPG*WQSSLCNPSKK
Trigger: CTTCTTACTTGGGTTACACAGTGAACTCTGCCACCATCCCGGGAGATGTGCTCTATATCGCTGGGCAGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp GCTGCCCAGCGATATAGAGCACATCTCCCGGGATGGTaGCAGAGTTCACTGTGTAACCCAAGTAAGAAGCAA +
Preference number: 6 (lower is better)
Translates to: AAQRYRAHLPGW*QSSLCNPSKKQ
Trigger: TTGCTTCTTACTTGGGTTACACAGTGAACTCTGCCACCATCCCGGGAGATGTGCTCTATATCGCTGGGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp TCATCGTCTGGAGACCACCCCTGCGGCCTATTTTGTTaGCTGCCACCAGGACCTCTTCTGTGGATGAATACT +
Preference number: 6 (lower is better)
Translates to: SSSGDHPCGLFC*LPPGPLLWMNT
Trigger: AGTATTCATCCACAGAAGAGGTCCTGGTGGCAGCAAACAAAATAGGCCGCAGGGGTGGTCTCCAGACGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp AAAAGCTCCGTGATATCTGCCTCAGCGAATCAAGGGTaGCACGGTACTGCAGATCAGCCTCGTAAACTGAGT +
Preference number: 6 (lower is better)
Translates to: KSSVISASANQG*HGTADQPRKLS
Trigger: ACTCAGTTTACGAGGCTGATCTGCAGTACCGTGTCACCCTTGATTCGCTGAGGCAGATATCACGGAGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS GCA 72 bp TGCGTTGCGCATACTCTTTCCTTATGGTCTTGCCACTaGCATGATAAATGTACACAGCTCCTGCGTGGTCGT +
Preference number: 6 (lower is better)
Translates to: CVAHTLSLWSCH*HDKCTQLLRGR
Trigger: ACGACCACGCAGGAGCTGTGTACATTTATCATGGCAGTGGCAAGACCATAAGGAAAGAGTATGCGCAACGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp GTTTGGCAGAGCGTCATCGAGCACGGGCCCATTTTCTaGATCAGTGAGGTTAAAATCCAAAGTCACTCTCAC +
Preference number: 6 (lower is better)
Translates to: VWQSVIEHGPIF*ISEVKIQSHSH
Trigger: GTGAGAGTGACTTTGGATTTTAACCTCACTGATCCAGAAAATGGGCCCGTGCTCGATGACGCTCTGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp AGTCTTTGGCAAAAGGAATATGTCCATGGACTGAGTTaGGCAGAGCGTCATCGAGCACGGGCCCATTTTCTG +
Preference number: 6 (lower is better)
Translates to: SLWQKEYVHGLS*AERHRARAHFL
Trigger: CAGAAAATGGGCCCGTGCTCGATGACGCTCTGCCAAACTCAGTCCATGGACATATTCCTTTTGCCAAAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp CAGGATAGCCATCTGACGTCAGATTGGGAAATGAAATaGCCAGCCGAAGTTCTGGCATTGGGAAATGCCCTC +
Preference number: 6 (lower is better)
Translates to: QDSHLTSDWEMK*PAEVLALGNAL
Trigger: GAGGGCATTTCCCAATGCCAGAACTTCGGCTGGCAATTTCATTTCCCAATCTGACGTCAGATGGCTATCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp TCCAGGGTGAGGTCTGAAACGCATCTTTCCTTGTTCCCACAGTCTTaGGCAAAAGGAATATGTCCATGGACTGAGTTTGGCAGAGCGTCA +
Preference number: 6 (lower is better)
Translates to: SRVRSETHLSLFPQS*AKGICPWTEFGRAS
Trigger: TGACGCTCTGCCAAACTCAGTCCATGGACATATTCCTTTTGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACCTCACCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp CAGAGCTTTAACAATAGTGACCAGGGCCAACTCATCTaGGACGTTGAAGAAGTGCTTTTCGGTGGGCTCACT +
Preference number: 6 (lower is better)
Translates to: QSFNNSDQGQLI*DVEEVLFGGLT
Trigger: AGTGAGCCCACCGAAAAGCACTTCTTCAACGTCTCAGATGAGTTGGCCCTGGTCACTATTGTTAAAGCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp GTTCTTTTCTGTTGTGGACACATCCAGGGTGAGGTCTaGAACGCATCTTTCCTTGTTCCCACAGTCTTTGGC +
Preference number: 6 (lower is better)
Translates to: VLFCCGHIQGEV*NASFLVPTVFG
Trigger: GCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACCTCACCCTGGATGTGTCCACAACAGAAAAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp TCAGCAGGTTCTTTTCTGTTGTGGACACATCCAGGGTaGGGTCTGAAACGCATCTTTCCTTGTTCCCACAGT +
Preference number: 6 (lower is better)
Translates to: SAGSFLLWTHPG*GLKRIFPCSHS
Trigger: ACTGTGGGAACAAGGAAAGATGCGTTTCAGACCTCACCCTGGATGTGTCCACAACAGAAAAGAACCTGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS GCA 72 bp GTGACCAGGGCCAACTCATCTGAGACGTTGAAGAAGTaGTTTTCGGTGGGCTCACTTGCGATTGATTTTATC +
Preference number: 6 (lower is better)
Translates to: VTRANSSETLKK*FSVGSLAIDFI
Trigger: GATAAAATCAATCGCAAGTGAGCCCACCGAAAAGCACTTCTTCAACGTCTCAGATGAGTTGGCCCTGGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp CACCTGAGGGAATGCGTTGCGCATACTCTTTCCTTATaGTCTTGCCACTGCCATGATAAATGTACACAGCTC +
Preference number: 6 (lower is better)
Translates to: HLRECVAHTLSL*SCHCHDKCTQL
Trigger: GAGCTGTGTACATTTATCATGGCAGTGGCAAGACCATAAGGAAAGAGTATGCGCAACGCATTCCCTCAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp GCACTGTCTCCCTTGTTTTTGACGGTGAGGCTGACATaGAACTTGTCATTCTGGGATCTGACAATCAGCAGG +
Preference number: 6 (lower is better)
Translates to: ALSPLFLTVRLT*NLSFWDLTISR
Trigger: CCTGCTGATTGTCAGATCCCAGAATGACAAGTTCAATGTCAGCCTCACCGTCAAAAACAAGGGAGACAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp TATCCAAACATGTCCTCCACTGGACCACTGAAGCTCATGGAGTTTTaGACATCAACGTTGAAGGAGATGCAGACGCCTAGGATAACGGTG +
Preference number: 6 (lower is better)
Translates to: YPNMSSTGPLKLMEF*TSTLKEMQTPRITV
Trigger: CACCGTTATCCTAGGCGTCTGCATCTCCTTCAACGTTGATGTCAAAAACTCCATGAGCTTCAGTGGTCCAGTGGAGGACATGTTTGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp TCTGTTGTGGACACATCCAGGGTGAGGTCTGAAACGCATCTTTCCTaGTTCCCACAGTCTTTGGCAAAAGGAATATGTCCATGGACTGAG +
Preference number: 6 (lower is better)
Translates to: SVVDTSRVRSETHLS*FPQSLAKGICPWTE
Trigger: CTCAGTCCATGGACATATTCCTTTTGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACCTCACCCTGGATGTGTCCACAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp GGCTTCGAGGTCTGCAGTTTACATTATCAGAAGATGACCATCCAGTaGGGTACAGTACAGGATAGCCATCTGACGTCAGATTGGGAAATG +
Preference number: 6 (lower is better)
Translates to: GFEVCSLHYQKMTIQ*GTVQDSHLTSDWEM
Trigger: CATTTCCCAATCTGACGTCAGATGGCTATCCTGTACTGTACCCAACTGGATGGTCATCTTCTGATAATGTAAACTGCAGACCTCGAAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp TGTAACCCAAGTAAGAAGCAAGAGGCTCGTTCATCTTaGTGGGCTCAGTTTGAAAGGTGGTGTTATGAGGGA +
Preference number: 6 (lower is better)
Translates to: CNPSKKQEARSS*WAQFERWCYEG
Trigger: TCCCTCATAACACCACCTTTCAAACTGAGCCCACCAAGATGAACGAGCCTCTTGCTTCTTACTTGGGTTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp TTGGGTACAGTACAGGATAGCCATCTGACGTCAGATTaGGAAATGAAATTGCCAGCCGAAGTTCTGGCATTG +
Preference number: 6 (lower is better)
Translates to: LGTVQDSHLTSD*EMKLPAEVLAL
Trigger: CAATGCCAGAACTTCGGCTGGCAATTTCATTTCCCAATCTGACGTCAGATGGCTATCCTGTACTGTACCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp CACGTGATGGTAGCAATCTTGCAGGTACTGCAGTCCTaGATTGTGCCTCTTTTGAGAACCTCAGACTTTGAT +
Preference number: 6 (lower is better)
Translates to: HVMVAILQVLQS*IVPLLRTSDFD
Trigger: ATCAAAGTCTGAGGTTCTCAAAAGAGGCACAATCCAGGACTGCAGTACCTGCAAGATTGCTACCATCACGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp TTAACAATAGTGACCAGGGCCAACTCATCTGAGACGTaGAAGAAGTGCTTTTCGGTGGGCTCACTTGCGATT +
Preference number: 6 (lower is better)
Translates to: LTIVTRANSSET*KKCFSVGSLAI
Trigger: AATCGCAAGTGAGCCCACCGAAAAGCACTTCTTCAACGTCTCAGATGAGTTGGCCCTGGTCACTATTGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp AGAAGCAAGAGGCTCGTTCATCTTGGTGGGCTCAGTTaGAAAGGTGGTGTTATGAGGGATGACAATCTGGTT +
Preference number: 6 (lower is better)
Translates to: RSKRLVHLGGLS*KGGVMRDDNLV
Trigger: AACCAGATTGTCATCCCTCATAACACCACCTTTCAAACTGAGCCCACCAAGATGAACGAGCCTCTTGCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp GACACATCCAGGGTGAGGTCTGAAACGCATCTTTCCTaGTTCCCACAGTCTTTGGCAAAAGGAATATGTCCA +
Preference number: 6 (lower is better)
Translates to: DTSRVRSETHLS*FPQSLAKGICP
Trigger: TGGACATATTCCTTTTGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACCTCACCCTGGATGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp GTGTTGTACGCACTGTCTCCCTTGTTTTTGACGGTGAGGCTGACATaGAACTTGTCATTCTGGGATCTGACAATCAGCAGGTTCTTTTCT +
Preference number: 6 (lower is better)
Translates to: VLYALSPLFLTVRLT*NLSFWDLTISRFFS
Trigger: AGAAAAGAACCTGCTGATTGTCAGATCCCAGAATGACAAGTTCAATGTCAGCCTCACCGTCAAAAACAAGGGAGACAGTGCGTACAACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp CTACATTCTTGTACAGGGGCGAACGAGTTCACAACTTaGAATGTAGGGCTGACATCAGAACATATGCCAGTC +
Preference number: 6 (lower is better)
Translates to: LHSCTGANEFTT*NVGLTSEHMPV
Trigger: GACTGGCATATGTTCTGATGTCAGCCCTACATTTCAAGTTGTGAACTCGTTCGCCCCTGTACAAGAATGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp GGTCTGAAACGCATCTTTCCTTGTTCCCACAGTCTTTaGCAAAAGGAATATGTCCATGGACTGAGTTTGGCA +
Preference number: 6 (lower is better)
Translates to: GLKRIFPCSHSL*QKEYVHGLSLA
Trigger: TGCCAAACTCAGTCCATGGACATATTCCTTTTGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp GCTACATTCTTGTACAGGGGCGAACGAGTTCACAACTaGAAATGTAGGGCTGACATCAGAACATATGCCAGT +
Preference number: 6 (lower is better)
Translates to: ATFLYRGERVHN*KCRADIRTYAS
Trigger: ACTGGCATATGTTCTGATGTCAGCCCTACATTTCAAGTTGTGAACTCGTTCGCCCCTGTACAAGAATGTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp AGGTCTGAAACGCATCTTTCCTTGTTCCCACAGTCTTaGGCAAAAGGAATATGTCCATGGACTGAGTTTGGC +
Preference number: 6 (lower is better)
Translates to: RSETHLSLFPQS*AKGICPWTEFG
Trigger: GCCAAACTCAGTCCATGGACATATTCCTTTTGCCAAAGACTGTGGGAACAAGGAAAGATGCGTTTCAGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp AGGAGAACCAATAAGAACCCATTTGCCTTCTTCGTTTTCATACTGTaGAACGGTGTATCCAAACATGTCCTCCACTGGACCACTGAAGCT +
Preference number: 6 (lower is better)
Translates to: RRTNKNPFAFFVFIL*NGVSKHVLHWTTEA
Trigger: AGCTTCAGTGGTCCAGTGGAGGACATGTTTGGATACACCGTTCAACAGTATGAAAACGAAGAAGGCAAATGGGTTCTTATTGGTTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp AAGCTGTGTGCTACATTCTTGTACAGGGGCGAACGAGTTCACAACTaGAAATGTAGGGCTGACATCAGAACATATGCCAGTCGTATAATG +
Preference number: 6 (lower is better)
Translates to: KLCATFLYRGERVHN*KCRADIRTYASRIM
Trigger: CATTATACGACTGGCATATGTTCTGATGTCAGCCCTACATTTCAAGTTGTGAACTCGTTCGCCCCTGTACAAGAATGTAGCACACAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp ATACTGTTGAACGGTGTATCCAAACATGTCCTCCACTaGACCACTGAAGCTCATGGAGTTTTTGACATCAAC +
Preference number: 6 (lower is better)
Translates to: ILLNGVSKHVLH*TTEAHGVFDIN
Trigger: GTTGATGTCAAAAACTCCATGAGCTTCAGTGGTCCAGTGGAGGACATGTTTGGATACACCGTTCAACAGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp TCTCCCTTGTTTTTGACGGTGAGGCTGACATTGAACTaGTCATTCTGGGATCTGACAATCAGCAGGTTCTTT +
Preference number: 6 (lower is better)
Translates to: SPLFLTVRLTLN*SFWDLTISRFF
Trigger: AAAGAACCTGCTGATTGTCAGATCCCAGAATGACAAGTTCAATGTCAGCCTCACCGTCAAAAACAAGGGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp GTCTGCAGTTTACATTATCAGAAGATGACCATCCAGTaGGGTACAGTACAGGATAGCCATCTGACGTCAGAT +
Preference number: 6 (lower is better)
Translates to: VCSLHYQKMTIQ*GTVQDSHLTSD
Trigger: ATCTGACGTCAGATGGCTATCCTGTACTGTACCCAACTGGATGGTCATCTTCTGATAATGTAAACTGCAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp CTTTTGAGAACCTCAGACTTTGATATTGTCATTTTCTTCCCAGAGTaGATACCCAAAGGGTCCTCAAGGCTTCGAGGTCTGCAGTTTACA +
Preference number: 6 (lower is better)
Translates to: LLRTSDFDIVIFFPE*IPKGSSRLRGLQFT
Trigger: TGTAAACTGCAGACCTCGAAGCCTTGAGGACCCTTTGGGTATCAACTCTGGGAAGAAAATGACAATATCAAAGTCTGAGGTTCTCAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp ATGGTAGCAATCTTGCAGGTACTGCAGTCCTGGATTGTGCCTCTTTaGAGAACCTCAGACTTTGATATTGTCATTTTCTTCCCAGAGTTG +
Preference number: 6 (lower is better)
Translates to: MVAILQVLQSWIVPL*RTSDFDIVIFFPEL
Trigger: CAACTCTGGGAAGAAAATGACAATATCAAAGTCTGAGGTTCTCAAAAGAGGCACAATCCAGGACTGCAGTACCTGCAAGATTGCTACCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp ATAAGAACCCATTTGCCTTCTTCGTTTTCATACTGTTaGACGGTGTATCCAAACATGTCCTCCACTGGACCA +
Preference number: 6 (lower is better)
Translates to: IRTHLPSSFSYC*TVYPNMSSTGP
Trigger: TGGTCCAGTGGAGGACATGTTTGGATACACCGTTCAACAGTATGAAAACGAAGAAGGCAAATGGGTTCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp AAAATCGCTGAATGTTTTCATCCTCACAGTCTTGGATaGCCTGTTTCAGGCGATAGTTGTCATGCGATTCTC +
Preference number: 6 (lower is better)
Translates to: KIAECFHPHSLG*PVSGDSCHAIL
Trigger: GAGAATCGCATGACAACTATCGCCTGAAACAGGTCATCCAAGACTGTGAGGATGAAAACATTCAGCGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp ATTAATCAGCTCAGGAACAGTCTCATTGGCAGCAACTaGAATGTGGTGTTCACTCGCAGAACTGTAAAACTG +
Preference number: 6 (lower is better)
Translates to: INQLRNSLIGSN*NVVFTRRTVKL
Trigger: CAGTTTTACAGTTCTGCGAGTGAACACCACATTTCAGTTGCTGCCAATGAGACTGTTCCTGAGCTGATTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp TTGCTGCTGCTTAAAGTCAGCGATGAGTTTTCACTCTaGAGTTCTCCCCGTATGGTAAGATTTAAGCTGGAA +
Preference number: 6 (lower is better)
Translates to: LLLLKVSDEFSL*SSPRMVRFKLE
Trigger: TTCCAGCTTAAATCTTACCATACGGGGAGAACTTCAGAGTGAAAACTCATCGCTGACTTTAAGCAGCAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CCA 72 bp GCAGATCAGTGTAAGAATCTTTGTCGATGTCAATTGTaGTTAAGACGCTACCAAAGTAGGATCCGATCTGCT +
Preference number: 6 (lower is better)
Translates to: ADQCKNLCRCQL*LRRYQSRIRSA
Trigger: AGCAGATCGGATCCTACTTTGGTAGCGTCTTAACCACAATTGACATCGACAAAGATTCTTACACTGATCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp AATAAGAACCCATTTGCCTTCTTCGTTTTCATACTGTaGAACGGTGTATCCAAACATGTCCTCCACTGGACC +
Preference number: 6 (lower is better)
Translates to: NKNPFAFFVFIL*NGVSKHVLHWT
Trigger: GGTCCAGTGGAGGACATGTTTGGATACACCGTTCAACAGTATGAAAACGAAGAAGGCAAATGGGTTCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp AAGGGTGACACGGTACTGCAGATCAGCCTCGTAAACTaGGTCTTCTTTAGACTTCAATTTCACATGAAAACA +
Preference number: 6 (lower is better)
Translates to: KGDTVLQISLVN*VFFRLQFHMKT
Trigger: TGTTTTCATGTGAAATTGAAGTCTAAAGAAGACTCAGTTTACGAGGCTGATCTGCAGTACCGTGTCACCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp ATCTTGCAGGTACTGCAGTCCTGGATTGTGCCTCTTTaGAGAACCTCAGACTTTGATATTGTCATTTTCTTC +
Preference number: 6 (lower is better)
Translates to: ILQVLQSWIVPL*RTSDFDIVIFF
Trigger: GAAGAAAATGACAATATCAAAGTCTGAGGTTCTCAAAAGAGGCACAATCCAGGACTGCAGTACCTGCAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 72 bp ATTGAGGTTGAACTCATGTGTTACATTTGCTCCATATaGTACAATTCCAACCTGTGTCTGTTTGGGGCCAAT +
Preference number: 6 (lower is better)
Translates to: IEVELMCYICSI*YNSNLCLFGAN
Trigger: ATTGGCCCCAAACAGACACAGGTTGGAATTGTACAATATGGAGCAAATGTAACACATGAGTTCAACCTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS TCA 72 bp TATTTTGTTTGCTGCCACCAGGACCTCTTCTGTGGATaGATACTTATTGAGGTTGAACTCATGTGTTACATT +
Preference number: 6 (lower is better)
Translates to: YFVCCHQDLFCG*ILIEVELMCYI
Trigger: AATGTAACACATGAGTTCAACCTCAATAAGTATTCATCCACAGAAGAGGTCCTGGTGGCAGCAAACAAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp ATTTATGCATACTGTTTCTTTGCCCTCCACACGGCAGTTTTTCTTTaGAATATTCACTTTGTTGGGTTCAAAATTCATGGTCACTTTAAC +
Preference number: 6 (lower is better)
Translates to: IYAYCFFALHTAVFL*NIHFVGFKIHGHFN
Trigger: GTTAAAGTGACCATGAATTTTGAACCCAACAAAGTGAATATTCAAAAGAAAAACTGCCGTGTGGAGGGCAAAGAAACAGTATGCATAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9
CDS CAA 90 bp ATTGCATTTTCTGAGAGATGTGATGTATTAAACTGGAATATTATTTaGAAGTTAACCACGTCTCCTGTCCTCAGGAAAGGATATCCAACT +
Preference number: 6 (lower is better)
Translates to: IAFSERCDVLNWNII*KLTTSPVLRKGYPT
Trigger: AGTTGGATATCCTTTCCTGAGGACAGGAGACGTGGTTAACTTCAAAATAATATTCCAGTTTAATACATCACATCTCTCAGAAAATGCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061673.9