RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ISYNA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019139

Ensembl transcript IDs: ENSMUST00000019283.10, ENSMUST00000209285.2, ENSMUST00000210005.2, ENSMUST00000211117.2, ENSMUST00000211501.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGTTGGTGCCTGCGGGTGCCCATTGGCATCGCCGGTGCAGCCATTaGTGGCAGGTGTGGGCTCTTTCTTGCAAGGCAGTGGGCTGGTGG +
Preference number: 1 (lower is better)
Translates to: VLVPAGAHWHRRCSH*WQVWALSCKAVGWW
Trigger: CCACCAGCCCACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAATGGCTGCACCGGCGATGCCAATGGGCACCCGCAGGCACCAACAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CCA 90 bp GCTGTCGCCAACATAGGGCACATATTTGATCACCACACAGTGGTCTaGCCGCTCTCCAGGCGCGTAGAGCACATGGTTGCTGTGAACCAT +
Preference number: 1 (lower is better)
Translates to: AVANIGHIFDHHTVV*PLSRRVEHMVAVNH
Trigger: ATGGTTCACAGCAACCATGTGCTCTACGCGCCTGGAGAGCGGCCAGACCACTGTGTGGTGATCAAATATGTGCCCTATGTTGGCGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CCA 90 bp CTGGCCACAGCAAAAAGTGTGGACGGTGACACCTCCAGGCCAAGCTaGATAGTATGTAGCAAGTTTTCTGCTGTGTCATTGCGACCTGGG +
Preference number: 1 (lower is better)
Translates to: LATAKSVDGDTSRPS*IVCSKFSAVSLRPG
Trigger: CCCAGGTCGCAATGACACAGCAGAAAACTTGCTACATACTATCCAGCTTGGCCTGGAGGTGTCACCGTCCACACTTTTTGCTGTGGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CAA 90 bp GGTGTTGGTGCCTGCGGGTGCCCATTGGCATCGCCGGTGCAGCCATaGGTGGCAGGTGTGGGCTCTTTCTTGCAAGGCAGTGGGCTGGTG +
Preference number: 2 (lower is better)
Translates to: GVGACGCPLASPVQP*VAGVGSFLQGSGLV
Trigger: CACCAGCCCACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAATGGCTGCACCGGCGATGCCAATGGGCACCCGCAGGCACCAACACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR GCA 90 bp GGCGGGAGCCCCACGCAAGCCCTGAAAATATTCTCGATACAGCTGCGCTGGCGGGGTGCAGACAGGTTCTaGCCGTCGTTGTTGCCCAGG +
Preference number: 2 (lower is better)
Translates to: GGSPTQALKIFSIQLRWRGADRF*PSLLPR
Trigger: CCTGGGCAACAACGACGGGCAGAACCTGTCTGCACC...CCGCCAGCGCAGCTGTATCGAGAATATTTTCAGGGCTTGCGTGGGGCTCCCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CCA 90 bp GACAGCTTTGGTGTTGGTGCCTGCGGGTGCCCATTGGCATCGCCGGTGCAGCCAAATAGCATGTGGTTCTaGGGCGGGAGCCCCACGCAA +
Preference number: 2 (lower is better)
Translates to: DSFGVGACGCPLASPVQPNSMWF*GGSPTQ
Trigger: TTGCGTGGGGCTCCCGCCCCAGAACCACATGCTATT...TGGCTGCACCGGCGATGCCAATGGGCACCCGCAGGCACCAACACCAAAGCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CCA 90 bp TTGCAAGGCAGTGGGCTGGTGGCCACCACCTCTCCTGGCTTGATGCCTGGGCCTTGCTCTAATAGCATGTaGTTCTGGGGCGGGAGCCCC +
Preference number: 2 (lower is better)
Translates to: LQGSGLVATTSPGLMPGPCSNSM*FWGGSP
Trigger: GGGGCTCCCGCCCCAGAACCACATGCTATTAGAGCA...AGGCCCAGGCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR TCA 90 bp TTGCAAGGCAGTGGGCTGGTGGCCACCACCTCTCCTGGCTTGATGCCTGGGCCTAGCACATGGTTGCTGTaGACCATGTCGTCCACCACA +
Preference number: 2 (lower is better)
Translates to: LQGSGLVATTSPGLMPGPSTWLL*TMSSTT
Trigger: TGTGGTGGACGACATGGTTCACAGCAACCATGTGCT...AGGCCCAGGCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTTGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CCA 90 bp CAGCTCGGAGGTGTACTCGTCCAAGGCACGCTTGCTGTCGCCAACATAGGGCACTCTTTGTCACCTCCTTaGAGCGGAACTGCAGCGGTG +
Preference number: 2 (lower is better)
Translates to: QLGGVLVQGTLAVANIGHSLSPP*SGTAAV
Trigger: CACCGCTGCAGTTCCGCTCCAAGGAGGTGACAAAGA...GTGCCCTATGTTGGCGACAGCAAGCGTGCCTTGGACGAGTACACCTCCGAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CAA 90 bp TCTTTCTTGCAAGGCAGTGGGCTGGTGGCCACCACCTCTCCTGGCTaGATGCCTGGGCCTGGACGCTCCATCTTGTGCTCTAATAGCATG +
Preference number: 2 (lower is better)
Translates to: SFLQGSGLVATTSPG*MPGPGRSILCSNSM
Trigger: CATGCTATTAGAGCACAAGATGGAGCGTCCAGGCCCAGGCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTTGCAAGAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR TCA 90 bp ACTGCTCTTTGTCACCTCCTTGGAGCGGAACTGCAGCGGTGCAGACAGGTTCTGTCTGTGGGGATCCATTaGGGAAGGCGCAGTCCTCCA +
Preference number: 2 (lower is better)
Translates to: TALCHLLGAELQRCRQVLSVGIH*GRRSPP
Trigger: TGGAGGACTGCGCCTTCCTCAATGGATCCCCACAGA...CAGAACCTGTCTGCACCGCTGCAGTTCCGCTCCAAGGAGGTGACAAAGAGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR GCA 90 bp ACACTGCTCTTTGTCACCTCCTTGGAGCGGAACTGCAGCGGTGCAGACAGGTTCTTTCTGCTGTGTCATTaGGACCTGGGACCACCTCGC +
Preference number: 2 (lower is better)
Translates to: TLLFVTSLERNCSGADRFFLLCH*DLGPPR
Trigger: GCGAGGTGGTCCCAGGTCGCAATGACACAGCAGAAA...GAACCTGTCTGCACCGCTGCAGTTCCGCTCCAAGGAGGTGACAAAGAGCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR GCA 90 bp GTCCAAGGCACGCTTGCTGTCGCCAACATAGGGCACATATTTGATCACCACACATCCTTGGAGCGGAACTaGAGCGGTGCAGACAGGTTC +
Preference number: 2 (lower is better)
Translates to: VQGTLAVANIGHIFDHHTSLERN*SGADRF
Trigger: GAACCTGTCTGCACCGCTGCAGTTCCGCTCCAAGGA...TGTGTGGTGATCAAATATGTGCCCTATGTTGGCGACAGCAAGCGTGCCTTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR GCA 90 bp AAATATTCTCGATACAGCTGCGCTGGCGGAAGAGGGCATTCACTACAGGGCTGCTCTGCCCGTCGTTGTTaGCCAGGTGGTTATAGCTCA +
Preference number: 2 (lower is better)
Translates to: KYSRYSCAGGRGHSLQGCSARRC*PGGYSS
Trigger: TGAGCTATAACCACCTGGGCAACAACGACGGGCAGA...GCAGCCCTGTAGTGAATGCCCTCTTCCGCCAGCGCAGCTGTATCGAGAATATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CCA 72 bp CCTGCGGGTGCCCATTGGCATCGCCGGTGCAGCCATTaGTGGCAGGTGTGGGCTCTTTCTTGCAAGGCAGTG +
Preference number: 3 (lower is better)
Translates to: PAGAHWHRRCSH*WQVWALSCKAV
Trigger: CACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAATGGCTGCACCGGCGATGCCAATGGGCACCCGCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CAA 90 bp GTGAGCAGCACTAGGTCCAGCATGATGGGCGCGGCCAGGAGCGAATCCTCGCAGCAGAAGCGCTCCGTATaGGCGGTCCACAGCACGATG +
Preference number: 3 (lower is better)
Translates to: VSSTRSSMMGAARSESSQQKRSV*AVHSTM
Trigger: CATCGTGCTGTGGACCGCCAATACGGAGCGCTTCTG...CTGCGAGGATTCGCTCCTGGCCGCGCCCATCATGCTGGACCTAGTGCTGCTCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CAA 90 bp TGCAGCCATTGGTGGCAGGTGTGGGCTCTTTCTTGCAAGGCAGTGGGCTGGTGGACCACCTCTCCTGGCTaGATGCCTGGGCCTGGACGC +
Preference number: 3 (lower is better)
Translates to: CSHWWQVWALSCKAVGWWTTSPG*MPGPGR
Trigger: GCGTCCAGGCCCAGGCATCAAGCCAGGAGAGGTGGT...CCACCAGCCCACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAATGGCTGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR TCA 72 bp AAGGCAGTGGGCTGGTGGCCACCACCTCTCCTGGCTTaGTGCCTGGGCCTGGACGCTCCATCTTGTGCTCTA +
Preference number: 3 (lower is better)
Translates to: KAVGWWPPPLLA*CLGLDAPSCAL
Trigger: TAGAGCACAAGATGGAGCGTCCAGGCCCAGGCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CCA 72 bp ATTGGTGGCAGGTGTGGGCTCTTTCTTGCAAGGCAGTaGGCTGGTGGCCACCACCTCTCCTGGCTTGATGCC +
Preference number: 3 (lower is better)
Translates to: IGGRCGLFLARQ*AGGHHLSWLDA
Trigger: GGCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CAA 90 bp ACAGCACTGTGTGGAAGCCCTGAGGCTCGGGGTCCGAGTCTGTGCAGAAGCTCAACGATGGACATGGTCTaGAGCCCAGAGCCGATGAGG +
Preference number: 3 (lower is better)
Translates to: TALCGSPEARGPSLCRSSTMDMV*SPEPMR
Trigger: CCTCATCGGCTCTGGGCTCAAGACCATGTCCATCGT...TGAGCTTCTGCACAGACTCGGACCCCGAGCCTCAGGGCTTCCACACAGTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR-3UTR CAA 90 bp AGGTCCAGCATGATGGGCGCGGCCAGGAGCGAATCCTCGCAGGTATTATGGAGCCTCTTTGTCACCTCCTaGGAGCGGAACTGCAGCGGT +
Preference number: 3 (lower is better)
Translates to: RSSMMGAARSESSQVLWSLFVTS*ERNCSG
Trigger: ACCGCTGCAGTTCCGCTCCAAGGAGGTGACAAAGAG...GCTCCATAATACCTGCGAGGATTCGCTCCTGGCCGCGCCCATCATGCTGGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR GCA 72 bp ACCACACTGCTCTTTGTCACCTCCTTGGAGCGGAACTaGAGCGGTGCAGACAGGTTCTGCCCGTCGTTGTTG +
Preference number: 3 (lower is better)
Translates to: TTLLFVTSLERN*SGADRFCPSLL
Trigger: CAACAACGACGGGCAGAACCTGTCTGCACCGCTGCAGTTCCGCTCCAAGGAGGTGACAAAGAGCAGTGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CCA 72 bp ACGCAAGCCCTGAAAATATTCTCGATACAGCTGCGCTaGCGGAAGAGGGCATTCACTACAGGGCTGCCCGGG +
Preference number: 3 (lower is better)
Translates to: TQALKIFSIQLR*RKRAFTTGLPG
Trigger: CCCGGGCAGCCCTGTAGTGAATGCCCTCTTCCGCCAGCGCAGCTGTATCGAGAATATTTTCAGGGCTTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CCA 72 bp AACATAGGGCACATATTTGATCACCACACAGTGGTCTaGCCGCTCTCCAGGCGCGTAGAGCACATGGTTGCT +
Preference number: 3 (lower is better)
Translates to: NIGHIFDHHTVV*PLSRRVEHMVA
Trigger: AGCAACCATGTGCTCTACGCGCCTGGAGAGCGGCCAGACCACTGTGTGGTGATCAAATATGTGCCCTATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CAA 72 bp CAAGGCAGTGGGCTGGTGGCCACCACCTCTCCTGGCTaGATGCCTGGGCCTGGACGCTCCATCTTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: QGSGLVATTSPG*MPGPGRSILCS
Trigger: AGAGCACAAGATGGAGCGTCCAGGCCCAGGCATCAAGCCAGGAGAGGTGGTGGCCACCAGCCCACTGCCTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
3UTR CAA 72 bp GCCTGCGGGTGCCCATTGGCATCGCCGGTGCAGCCATaGGTGGCAGGTGTGGGCTCTTTCTTGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ACGCPLASPVQP*VAGVGSFLQGS
Trigger: ACTGCCTTGCAAGAAAGAGCCCACACCTGCCACCAATGGCTGCACCGGCGATGCCAATGGGCACCCGCAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
CDS-3UTR GCA 90 bp CCACACAGTGGTCTGGCCGCTCTCCAGGCGCGTAGAGCACATGGTTGCTGTGAAAATAGTTTGCCTCCTTaGGACCTGTGCGCGTGGGCC +
Preference number: 4 (lower is better)
Translates to: PHSGLAALQARRAHGCCENSLPP*DLCAWA
Trigger: GGCCCACGCGCACAGGTCGCAAGGAGGCAAACTATT...TTCACAGCAACCATGTGCTCTACGCGCCTGGAGAGCGGCCAGACCACTGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
CDS-3UTR TCA 90 bp GAAGCGCTCCGTATTGGCGGTCCACAGCACGATGACCTTATCCAATCCCGCACTTGGGTAGCAGCGCACTaGAGGGCACAAACACCTCCC +
Preference number: 4 (lower is better)
Translates to: EALRIGGPQHDDLIQSRTWVAAH*RAQTPP
Trigger: GGGAGGTGTTTGTGCCCTTCAGTGCGCTGCTACCCA...AGTGCGGGATTGGATAAGGTCATCGTGCTGTGGACCGCCAATACGGAGCGCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
CDS-3UTR GCA 90 bp TATTCTCGATACAGCTGCGCTGGCGGAAGAGGGCATTCACTACAGGGCTGCCCGATGTCCTTTCGGATTTaGTCCAACATCAAACACCAG +
Preference number: 4 (lower is better)
Translates to: YSRYSCAGGRGHSLQGCPMSFRI*SNIKHQ
Trigger: CTGGTGTTTGATGTTGGAGCAAATCCGAAAGGACAT...CGGGCAGCCCTGTAGTGAATGCCCTCTTCCGCCAGCGCAGCTGTATCGAGAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209285.2
CDS GCA 90 bp GAGGGCCGCGGACGCAGGCTCTCCATGTGGGGCCACAGCTGTTCCTaGAGACCGCAGTCCAGGACCTGCGCGCGCCGCATGGCCTCGGCC +
Preference number: 5 (lower is better)
Translates to: EGRGRRLSMWGHSCS*RPQSRTCARRMASA
Trigger: GGCCGAGGCCATGCGGCGCGCGCAGGTCCTGGACTGCGGTCTGCAGGAACAGCTGTGGCCCCACATGGAGAGCCTGCGTCCGCGGCCCTC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS GCA 90 bp TCCAATCCCGCACTGGATCGGAAATCTCTAATGTCCTTTCGGATTTaGTCCAACTTGCGACCTGTGCGCGTGGGCCAGGTTAGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: SNPALDRKSLMSFRI*SNLRPVRVGQVRRS
Trigger: GCTGCGCCTAACCTGGCCCACGCGCACAGGTCGCAAGTTGGAGCAAATCCGAAAGGACATTAGAGATTTCCGATCCAGTGCGGGATTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211501.2
CDS GCA 90 bp TCCAATCCCGCACTGGATCGGAAATCTCTAATGTCCTTTCGGATTTaGTCCAACTGTTGGGCACGTGTGCCAGGGATGAGGTTGTCCGCA +
Preference number: 5 (lower is better)
Translates to: SNPALDRKSLMSFRI*SNCWARVPGMRLSA
Trigger: TGCGGACAACCTCATCCCTGGCACACGTGCCCAACAGTTGGAGCAAATCCGAAAGGACATTAGAGATTTCCGATCCAGTGCGGGATTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS GCA 72 bp GGACGCAGGCTCTCCATGTGGGGCCACAGCTGTTCCTaGAGACCGCAGTCCAGGACCTGCGCGCGCCGCATG +
Preference number: 6 (lower is better)
Translates to: GRRLSMWGHSCS*RPQSRTCARRM
Trigger: CATGCGGCGCGCGCAGGTCCTGGACTGCGGTCTGCAGGAACAGCTGTGGCCCCACATGGAGAGCCTGCGTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS TCA 72 bp TGTCTGGTTGGCAGCGATGAACTCAGGAATGTAGACTaGGGGCCGCGGACGCAGGCTCTCCATGTGGGGCCA +
Preference number: 6 (lower is better)
Translates to: CLVGSDELRNVD*GPRTQALHVGP
Trigger: TGGCCCCACATGGAGAGCCTGCGTCCGCGGCCCTCAGTCTACATTCCTGAGTTCATCGCTGCCAACCAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS CCA 72 bp CCTTTCGGATTTGCTCCAACTTGCGACCTGTGCGCGTaGGCCAGGTTAGGCGCAGCCGATTGGCCAGAACAG +
Preference number: 6 (lower is better)
Translates to: PFGFAPTCDLCA*ARLGAADWPEQ
Trigger: CTGTTCTGGCCAATCGGCTGCGCCTAACCTGGCCCACGCGCACAGGTCGCAAGTTGGAGCAAATCCGAAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211501.2
CDS CAA 72 bp TGCTCCAACTGTTGGGCACGTGTGCCAGGGATGAGGTaGTCCGCACGTGCTGTCTGGTTGGCAGCGATGAAC +
Preference number: 6 (lower is better)
Translates to: CSNCWARVPGMR*SARAVWLAAMN
Trigger: GTTCATCGCTGCCAACCAGACAGCACGTGCGGACAACCTCATCCCTGGCACACGTGCCCAACAGTTGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS CCA 72 bp ATCCATAATAGTTTGCCTCCTTGCGACCTGTGCGCGTaGGCCAGGTTAGGCGCAGCCGATTGGCCAGAACAG +
Preference number: 6 (lower is better)
Translates to: IHNSLPPCDLCA*ARLGAADWPEQ
Trigger: CTGTTCTGGCCAATCGGCTGCGCCTAACCTGGCCCACGCGCACAGGTCGCAAGGAGGCAAACTATTATGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019283.10
ENSMUST00000209285.2
ENSMUST00000210005.2
ENSMUST00000211117.2
CDS GCA 72 bp TTGGGCACGTGTGCCAGGGATGAGGTTGTCCGCACGTaGTGTCTGGTTGGCAGCGATGAACTCAGGAATGTA +
Preference number: 6 (lower is better)
Translates to: LGTCARDEVVRT*CLVGSDELRNV
Trigger: TACATTCCTGAGTTCATCGCTGCCAACCAGACAGCACGTGCGGACAACCTCATCCCTGGCACACGTGCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS CAA 90 bp TTTCGGATTTGCTCCAACTGTTGGGCACGTGTGCCAGGGATGAGGTaGTCCGCACGTGCTGTCTGGTTGGCAGCGATGAACTCAGGAATG +
Preference number: 6 (lower is better)
Translates to: FRICSNCWARVPGMR*SARAVWLAAMNSGM
Trigger: CATTCCTGAGTTCATCGCTGCCAACCAGACAGCACGTGCGGACAACCTCATCCCTGGCACACGTGCCCAACAGTTGGAGCAAATCCGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2
CDS CAA 72 bp CGCACTGGATCGGAAATCTCTAATGTCCTTTCGGATTaGCTCCAACTTGCGACCTGTGCGCGTGGGCCAGGT +
Preference number: 6 (lower is better)
Translates to: RTGSEISNVLSD*LQLATCARGPG
Trigger: ACCTGGCCCACGCGCACAGGTCGCAAGTTGGAGCAAATCCGAAAGGACATTAGAGATTTCCGATCCAGTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211501.2
CDS GCA 72 bp GCACTGGATCGGAAATCTCTAATGTCCTTTCGGATTTaGTCCAACTTGCGACCTGTGCGCGTGGGCCAGGTT +
Preference number: 6 (lower is better)
Translates to: ALDRKSLMSFRI*SNLRPVRVGQV
Trigger: AACCTGGCCCACGCGCACAGGTCGCAAGTTGGAGCAAATCCGAAAGGACATTAGAGATTTCCGATCCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211501.2
CDS CAA 72 bp CGCACTGGATCGGAAATCTCTAATGTCCTTTCGGATTaGCTCCAACTGTTGGGCACGTGTGCCAGGGATGAG +
Preference number: 6 (lower is better)
Translates to: RTGSEISNVLSD*LQLLGTCARDE
Trigger: CTCATCCCTGGCACACGTGCCCAACAGTTGGAGCAAATCCGAAAGGACATTAGAGATTTCCGATCCAGTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019283.10
ENSMUST00000210005.2