Pregenerated sensors for ISX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031621Ensembl transcript IDs: ENSMUST00000034034.10, ENSMUST00000174427.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGTaGGACTCGAGCTGTCCTTTGATGTCTTCCATAGCCAGTACAGTC | + |
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Preference number: 1 (lower is better) Translates to: ALSQPVFSIRRLTGW*DSSCPLMSSIASTV Trigger: GACTGTACTGGCTATGGAAGACATCAAAGGACAGCTCGAGTCTCACCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| 3UTR GCA 90 bp | CAGAATCTAACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATaGTCAGTGTTCAGTATGGACATCATGAACAAGTACACGGATGTG | + |
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Preference number: 1 (lower is better) Translates to: QNLTCASQHLFSSAQ*SVFSMDIMNKYTDV Trigger: CACATCCGTGTACTTGTTCATGATGTCCATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGTTAGATTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR TCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTTGGAGTGATTTTCTCTaGGGTCCAGGGCTGCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: WTSSPALSQPVFSIRRLTWSDFL*GPGLPA Trigger: GGCAGGCAGCCCTGGACCTCAGAGAAAATCACTCCA...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| 3UTR-3UTR TCA 90 bp | ATGTCTTCCATAGCCAGTACAGTCTTTAATGGCAAGCTCTGGGTAGCTTCCTGGTGGAGTGATTTTCTCTaGGGTCCAGGGCTGCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: MSSIASTVFNGKLWVASWWSDFL*GPGLPA Trigger: GGCAGGCAGCCCTGGACCTCAGAGAAAATCACTCCA...CCAGGAAGCTACCCAGAGCTTGCCATTAAAGACTGTACTGGCTATGGAAGACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| 3UTR-3UTR CCA 90 bp | CATGAACAAGTACACGGATGTGCAGCCCCTCTCCATGCCTTGTATTTCCCAAGGTTTAATGGCAAGCTCTaGGTAGCTTCCTGGACTGTG | + |
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Preference number: 2 (lower is better) Translates to: HEQVHGCAAPLHALYFPRFNGKL*VASWTV Trigger: CACAGTCCAGGAAGCTACCCAGAGCTTGCCATTAAA...CCTTGGGAAATACAAGGCATGGAGAGGGGCTGCACATCCGTGTACTTGTTCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR GCA 90 bp | CTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGGATCTGAGGTCCAGGGCTaGCTGCCATCACTGAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: LCISTSIFKCTMLSVQYGSEVQG*LPSLRE Trigger: CTCTCTCAGTGATGGCAGGCAGCCCTGGACCTCAGA...TCCATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR GCA 90 bp | TATGGACATCATGAACAAGTACACGGATGTGCAGCCCCTCTCCATGCCTTGTATCTGAGAGAGGAGAGTTaGTTGCTTGGAAAGAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: YGHHEQVHGCAAPLHALYLREES*LLGKRK Trigger: TTTTCTCTTTCCAAGCAAGCAACTCTCCTCTCTCAG...ATACAAGGCATGGAGAGGGGCTGCACATCCGTGTACTTGTTCATGATGTCCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR GCA 90 bp | ACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGTGCAGCCCCTCTCCATaGCTTGTATTTCCCAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: TCASQHLFSSAQCSVFSMCSPSP*LVFPKA Trigger: AGCCTTGGGAAATACAAGGCATGGAGAGGGGCTGCA...CATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR GCA 90 bp | CTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGGAGTCCACAGAAATGGCTaGTTGGTTACAGATGATGTC | + |
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Preference number: 2 (lower is better) Translates to: LCISTSIFKCTMLSVQYGVHRNG*LVTDDV Trigger: GACATCATCTGTAACCAAGCAGCCATTTCTGTGGAC...TCCATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR GCA 90 bp | TGTCATCAATATCCATCTGCAGGTAGAGGTCAGGATCACCTTTCAGCTAACCTGACATCTATTTTCAAGTaGACAATGCTCAGTGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: CHQYPSAGRGQDHLSANLTSIFK*TMLSVQ Trigger: CTGAACACTGAGCATTGTGCACTTGAAAATAGATGT...CAGGTTAGCTGAAAGGTGATCCTGACCTCTACCTGCAGATGGATATTGATGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR GCA 90 bp | CTCTCCCAGTCTGAGATTTCTCATATCAAAGTCATACAGAGTGTTCTAGACACTGAGAGGAGAGTTGCTTaGTTGGAAAGAGAAAAATCA | + |
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Preference number: 2 (lower is better) Translates to: LSQSEISHIKVIQSVLDTERRVA*LEREKS Trigger: TGATTTTTCTCTTTCCAAGCAAGCAACTCTCCTCTC...AGTGTCTAGAACACTCTGTATGACTTTGATATGAGAAATCTCAGACTGGGAGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR TCA 72 bp | CAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGTaGGACTCGAGCTGTCCTTTGATGTCTTCCATAGCC | + |
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Preference number: 3 (lower is better) Translates to: QPVFSIRRLTGW*DSSCPLMSSIA Trigger: GGCTATGGAAGACATCAAAGGACAGCTCGAGTCTCACCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| 3UTR TCA 72 bp | CAAGTGCACAATGCTCAGTGTTCAGTATGGACATCATaGACAAGTACACGGATGTGCAGCCCCTCTCCATGC | + |
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Preference number: 3 (lower is better) Translates to: QVHNAQCSVWTS*TSTRMCSPSPC Trigger: GCATGGAGAGGGGCTGCACATCCGTGTACTTGTTCATGATGTCCATACTGAACACTGAGCATTGTGCACTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR CAA 90 bp | ACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGGCCCCTCTCCATGCCTaGTATTTCCCAAGGCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: TCASQHLFSSAQCSVFSMAPLHA*YFPRLS Trigger: GGAGAGCCTTGGGAAATACAAGGCATGGAGAGGGGC...CATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR CCA 72 bp | CTGCAGGTAGAGGTCAGGATCACCTTTCAGCTAACCTaGGCAGAATCTAACCTGTGCATCTCAACATCTATT | + |
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Preference number: 3 (lower is better) Translates to: LQVEVRITFQLT*AESNLCISTSI Trigger: AATAGATGTTGAGATGCACAGGTTAGATTCTGCCCAGGTTAGCTGAAAGGTGATCCTGACCTCTACCTGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR CAA 90 bp | AATGGCTGCTTGGTTACAGATGATGTCCAGAGGGGTAAAAGAAGAGCAGCTTATACTGAGAGAGGAGAGTaGCTTGCTTGGAAAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: NGCLVTDDVQRGKRRAAYTERGE*LAWKEK Trigger: TTTCTCTTTCCAAGCAAGCAACTCTCCTCTCTCAGT...ATAAGCTGCTCTTCTTTTACCCCTCTGGACATCATCTGTAACCAAGCAGCCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR GCA 72 bp | ATCACCTTTCAGCTAACCTGGGCAGAATCTAACCTGTaGATCTCAACATCTATTTTCAAGTGCACAATGCTC | + |
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Preference number: 3 (lower is better) Translates to: ITFQLTWAESNL*ISTSIFKCTML Trigger: GAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGTTAGATTCTGCCCAGGTTAGCTGAAAGGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR-3UTR CAA 90 bp | CTCTCCCAGTCTGAGATTTCTCATATCAAAGTCATACAGAGTGTTCTAGACACTAGAGAGGAGAGTTGCTaGCTTGGAAAGAGAAAAATC | + |
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Preference number: 3 (lower is better) Translates to: LSQSEISHIKVIQSVLDTREESC*LGKRKI Trigger: GATTTTTCTCTTTCCAAGCAAGCAACTCTCCTCTCT...AGTGTCTAGAACACTCTGTATGACTTTGATATGAGAAATCTCAGACTGGGAGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR GCA 72 bp | ACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATaGTCAGTGTTCAGTATGGACATCATGAACAAGTAC | + |
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Preference number: 3 (lower is better) Translates to: TCASQHLFSSAQ*SVFSMDIMNKY Trigger: GTACTTGTTCATGATGTCCATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| 3UTR GCA 72 bp | GAATCTAACCTGTGCATCTCAACATCTATTTTCAAGTaGACAATGCTCAGTGTTCAGTATGGACATCATGAA | + |
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Preference number: 3 (lower is better) Translates to: ESNLCISTSIFK*TMLSVQYGHHE Trigger: TTCATGATGTCCATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGTTAGATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR GCA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGGCACAGGACCCAGGCTaGTGTGGGGCACTGAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: SSPALSQPVFSIRRLTGWAQDPG*CGALRF Trigger: GAACCTCAGTGCCCCACAGCAGCCTGGGTCCTGTGC...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS-3UTR CCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGACCCAGGCTGCTGTaGGGCACTGAGGTTCCCACT | + |
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Preference number: 4 (lower is better) Translates to: WTSSPALSQPVFSIRRLTGPRLL*GTEVPT Trigger: AGTGGGAACCTCAGTGCCCCACAGCAGCCTGGGTCC...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS-3UTR TCA 90 bp | TGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCCAGGGCTGCCTGGCTGCTGTGGGGCACTaGGGTTCCCACTCTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: CGSLMDCGVIFSEVQGCLAAVGH*GSHSSP Trigger: AGGAGAAGAGTGGGAACCTCAGTGCCCCACAGCAGC...CAGGCAGCCCTGGACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGTAGGGACACAAGGATaGTGGGTGAGAGGGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: WTSSPALSQPVFSIRRLTVGTQG*WVRGPG Trigger: GCCTGGCCCTCTCACCCAGCATCCTTGTGTCCCTAC...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CCA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGGTCCCATGGGTGCCATaGGACAAGGGGAATCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SSPALSQPVFSIRRLTGWVPWVP*DKGNLC Trigger: ACACAGATTCCCCTTGTCCCATGGCACCCATGGGAC...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | TCCACAGAAATGGCTGCTTGGTTACAGATGATGTCCAGAGGGGTAAAAGAAGAGCCGGCCTCACCAGGCTaGTGTGGGGCACTGAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: STEMAAWLQMMSRGVKEEPASPG*CGALRF Trigger: GAACCTCAGTGCCCCACAGCAGCCTGGTGAGGCCGG...CTCTTCTTTTACCCCTCTGGACATCATCTGTAACCAAGCAGCCATTTCTGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTAGATGCTGCCCCACTTaGGGTGTAGGGGTGGGAACA | + |
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Preference number: 4 (lower is better) Translates to: WTSSPALSQPVFSIRRLTRCCPT*GVGVGT Trigger: TGTTCCCACCCCTACACCCCAAGTGGGGCAGCATCT...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTAAGTTGCACAGATGCTaGCCCACTTGGGGTGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: WTSSPALSQPVFSIRRLTKLHRC*PTWGVG Trigger: CCCTACACCCCAAGTGGGGCAGCATCTGTGCAACTT...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGGGGTTTCTTCAGGATTaGCTCAATGGAGAAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: SSPALSQPVFSIRRLTGWGFLQD*LNGEGQ Trigger: TTGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCC...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | AGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCTGTAGGTCCCATGGGTaGCATGGGACAAGGGGAATC | + |
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Preference number: 4 (lower is better) Translates to: SFLDCGSLMDCGVIFSEVCRSHG*HGTRGI Trigger: GATTCCCCTTGTCCCATGGCACCCATGGGACCTACA...GACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | ATGTCTTCCATAGCCAGTACAGTCTTTAATGGCAAGCTCTGGGTAGCTTCCTGGAAGTTGCACAGATGCTaGCCCACTTGGGGTGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: MSSIASTVFNGKLWVASWKLHRC*PTWGVG Trigger: CCCTACACCCCAAGTGGGGCAGCATCTGTGCAACTT...CCAGGAAGCTACCCAGAGCTTGCCATTAAAGACTGTACTGGCTATGGAAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CCA 90 bp | ATGTCTTCCATAGCCAGTACAGTCTTTAATGGCAAGCTCTGGGTAGCTTCCTGGGTCCCATGGGTGCCATaGGACAAGGGGAATCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: MSSIASTVFNGKLWVASWVPWVP*DKGNLC Trigger: ACACAGATTCCCCTTGTCCCATGGCACCCATGGGAC...CCAGGAAGCTACCCAGAGCTTGCCATTAAAGACTGTACTGGCTATGGAAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CCA 90 bp | TGCCTTGTATTTCCCAAGGCTCTCCTAAGTAAAGGAGAAAGGGGTCCACAGAAAAGATGCTGCCCCACTTaGGGTGTAGGGGTGGGAACA | + |
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Preference number: 4 (lower is better) Translates to: CLVFPKALLSKGERGPQKRCCPT*GVGVGT Trigger: TGTTCCCACCCCTACACCCCAAGTGGGGCAGCATCT...TTTCTGTGGACCCCTTTCTCCTTTACTTAGGAGAGCCTTGGGAAATACAAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR GCA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGAGTCCTCTTTACAAATaGTTTGTGGTCTGGGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: SSPALSQPVFSIRRLTGWSPLYK*FVVWAN Trigger: GTTTGCCCAGACCACAAAGCATTTGTAAAGAGGACT...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | CAGAGTGTTCTAGACACTAGCCCAGTGCAATGTCATCAATATCCATCTGCAGGTTGTAGGTCCCATGGGTaGCATGGGACAAGGGGAATC | + |
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Preference number: 4 (lower is better) Translates to: QSVLDTSPVQCHQYPSAGCRSHG*HGTRGI Trigger: GATTCCCCTTGTCCCATGGCACCCATGGGACCTACA...ACCTGCAGATGGATATTGATGACATTGCACTGGGCTAGTGTCTAGAACACTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR GCA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGCTGAGAGAGGAGAGTTaGTTGCTTGGAAAGAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: SSPALSQPVFSIRRLTGWLREES*LLGKRK Trigger: TTTTCTCTTTCCAAGCAAGCAACTCTCCTCTCTCAG...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS-3UTR TCA 90 bp | CTGGGTAGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTTGTCAGGGTAATGGGTaGAGTGGAAGAGCTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LGSFLDCGSLMDCGVIFSCQGNG*SGRASP Trigger: TGGAGAAGCTCTTCCACTTCACCCATTACCCTGACA...AGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCTACCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | ACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGGTAGGGACACAAGGATaGTGGGTGAGAGGGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: TCASQHLFSSAQCSVFSMVGTQG*WVRGPG Trigger: GCCTGGCCCTCTCACCCAGCATCCTTGTGTCCCTAC...CATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CCA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGAACTTCTTCTTTCTGTaGGTTTCTTCAGGATTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SSPALSQPVFSIRRLTGWNFFFL*VSSGLP Trigger: AGGCAATCCTGAAGAAACCCACAGAAAGAAGAAGTT...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | GTTCAGTATGGACATCATGAACAAGTACACGGATGTGCAGCCCCTCTCCATGCCAGTCCTCTTTACAAATaGTTTGTGGTCTGGGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: VQYGHHEQVHGCAAPLHASPLYK*FVVWAN Trigger: GTTTGCCCAGACCACAAAGCATTTGTAAAGAGGACT...GGCATGGAGAGGGGCTGCACATCCGTGTACTTGTTCATGATGTCCATACTGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CCA 90 bp | ATGTCTTCCATAGCCAGTACAGTCTTTAATGGCAAGCTCTGGGTAGCTTCCTGGATCCTGGAAGCCAATTaGGAACGGACATGGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: MSSIASTVFNGKLWVASWILEAN*ERTWMS Trigger: TGACATCCATGTCCGTTCCCAATTGGCTTCCAGGAT...CCAGGAAGCTACCCAGAGCTTGCCATTAAAGACTGTACTGGCTATGGAAGACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR GCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGAGAGGAGAGTTGCTTaGTTGGAAAGAGAAAAATCA | + |
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Preference number: 4 (lower is better) Translates to: WTSSPALSQPVFSIRRLTERRVA*LEREKS Trigger: TGATTTTTCTCTTTCCAAGCAAGCAACTCTCCTCTC...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS-3UTR CCA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTAACTTCTTCTTTCTGTaGGTTTCTTCAGGATTGCCT | + |
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Preference number: 4 (lower is better) Translates to: WTSSPALSQPVFSIRRLTNFFFL*VSSGLP Trigger: AGGCAATCCTGAAGAAACCCACAGAAAGAAGAAGTT...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR TCA 90 bp | ACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGTGTCAGGGTAATGGGTaGAGTGGAAGAGCTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TCASQHLFSSAQCSVFSMCQGNG*SGRASP Trigger: TGGAGAAGCTCTTCCACTTCACCCATTACCCTGACA...CATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CCA 90 bp | CTGGGTAGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTAAATGCTTTGTGGTCTaGGCAAACTTCTTCTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LGSFLDCGSLMDCGVIFSKCFVV*ANFFFL Trigger: CAGAAAGAAGAAGTTTGCCCAGACCACAAAGCATTT...AGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCTACCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CCA 90 bp | GGGCAGAATCTAACCTGTGCATCTCAACATCTATTTTCAAGTGCACAATGCTCAATCCTGGAAGCCAATTaGGAACGGACATGGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: GQNLTCASQHLFSSAQCSILEAN*ERTWMS Trigger: TGACATCCATGTCCGTTCCCAATTGGCTTCCAGGAT...TGAGCATTGTGCACTTGAAAATAGATGTTGAGATGCACAGGTTAGATTCTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR GCA 90 bp | TTACAGATGATGTCCAGAGGGGTAAAAGAAGAGCAGCTTATTCTGGACTTCATCGGGTTTCTTCAGGATTaGCTCAATGGAGAAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: LQMMSRGVKEEQLILDFIGFLQD*LNGEGQ Trigger: TTGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCC...GATGAAGTCCAGAATAAGCTGCTCTTCTTTTACCCCTCTGGACATCATCTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR GCA 90 bp | TCAACATCTATTTTCAAGTGCACAATGCTCAGTGTTCAGTATGGACATCATGAATCCAGCTCCTGTAGCTaGTCTGTGGTGAAGGTAGTG | + |
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Preference number: 4 (lower is better) Translates to: STSIFKCTMLSVQYGHHESSSCS*SVVKVV Trigger: CACTACCTTCACCACAGAGCAGCTACAGGAGCTGGA...TTCATGATGTCCATACTGAACACTGAGCATTGTGCACTTGAAAATAGATGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CCA 90 bp | TCCACAGAAATGGCTGCTTGGTTACAGATGATGTCCAGAGGGGTAAAAGAAGAGTTTACAAATGCTTTGTaGTCTGGGCAAACTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: STEMAAWLQMMSRGVKEEFTNAL*SGQTSS Trigger: AGAAGAAGTTTGCCCAGACCACAAAGCATTTGTAAA...CTCTTCTTTTACCCCTCTGGACATCATCTGTAACCAAGCAGCCATTTCTGTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CCA 90 bp | CTCTCCCAGTCTGAGATTTCTCATATCAAAGTCATACAGAGTGTTCTAGACACTAAATGCTTTGTGGTCTaGGCAAACTTCTTCTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LSQSEISHIKVIQSVLDTKCFVV*ANFFFL Trigger: CAGAAAGAAGAAGTTTGCCCAGACCACAAAGCATTT...AGTGTCTAGAACACTCTGTATGACTTTGATATGAGAAATCTCAGACTGGGAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS GCA 90 bp | GACACGTCCATGTTTGAGGGCAGGGCCAAGCCGGCCTCACCAGGCTaGTGTGGGGCACTGAGGTTCCCACTCTTCTCCTGCTTCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: DTSMFEGRAKPASPG*CGALRFPLFSCFLH Trigger: GTGGAGGAAGCAGGAGAAGAGTGGGAACCTCAGTGCCCCACAGCAGCCTGGTGAGGCCGGCTTGGCCCTGCCCTCAAACATGGACGTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CAA 90 bp | CAGAGTGTTCTAGACACTAGCCCAGTGCAATGTCATCAATATCCATCTGCAGGTGGGGGCCTCTCCAGCTaGGAACCTGGGATAGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: QSVLDTSPVQCHQYPSAGGGLSS*EPGIVV Trigger: GACAACTATCCCAGGTTCCAAGCTGGAGAGGCCCCC...ACCTGCAGATGGATATTGATGACATTGCACTGGGCTAGTGTCTAGAACACTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CAA 90 bp | TGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCCAGGGCTGCCTGGTTCTTTTTCTCTTCTaGGGGCTGATCCTGTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: CGSLMDCGVIFSEVQGCLVLFLF*GLILWG Trigger: CCCCCACAGGATCAGCCCCAAGAAGAGAAAAAGAAC...CAGGCAGCCCTGGACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | TCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTGGCTGGCTCTTTACAAATGCTTaGTGGTCTGGGCAAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: SSPALSQPVFSIRRLTGWLFTNA*WSGQTS Trigger: AGAAGTTTGCCCAGACCACAAAGCATTTGTAAAGAG...CCAGCCAGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | TGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCCAGGGCTGCCTGGTGCGAACTCTCCGCTaGTTCTTTTTCTCTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: CGSLMDCGVIFSEVQGCLVRTLR*FFFSSW Trigger: CCAAGAAGAGAAAAAGAACAAGCGGAGAGTTCGCAC...CAGGCAGCCCTGGACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCGTCCCTATGTTGAAGTaGCACAGATGCTGCCCCACT | + |
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Preference number: 5 (lower is better) Translates to: SFLDCGSLMDCGVIFSEVVPMLK*HRCCPT Trigger: AGTGGGGCAGCATCTGTGCAACTTCAACATAGGGAC...GACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | TCCACAGAAATGGCTGCTTGGTTACAGATGATGTCCAGAGGGGTAAAAGAAGAGGTTCTTTTTCTCTTCTaGGGGCTGATCCTGTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: STEMAAWLQMMSRGVKEEVLFLF*GLILWG Trigger: CCCCCACAGGATCAGCCCCAAGAAGAGAAAAAGAAC...CTCTTCTTTTACCCCTCTGGACATCATCTGTAACCAAGCAGCCATTTCTGTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CAA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTAAATCAGTCCCTATGTaGAAGTTGCACAGATGCTGC | + |
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Preference number: 5 (lower is better) Translates to: WTSSPALSQPVFSIRRLTKSVPM*KLHRCC Trigger: GCAGCATCTGTGCAACTTCAACATAGGGACTGATTT...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | ATGTCTTCCATAGCCAGTACAGTCTTTAATGGCAAGCTCTGGGTAGCTTCCTGGTGGGTTTCTTCAGGATaGCCTCAATGGAGAAGGACA | + |
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Preference number: 5 (lower is better) Translates to: MSSIASTVFNGKLWVASWWVSSG*PQWRRT Trigger: TGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCCA...CCAGGAAGCTACCCAGAGCTTGCCATTAAAGACTGTACTGGCTATGGAAGACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCTGGGTTTCTTCAGGATaGCCTCAATGGAGAAGGACA | + |
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Preference number: 5 (lower is better) Translates to: SFLDCGSLMDCGVIFSEVWVSSG*PQWRRT Trigger: TGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCCA...GACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | TGGACTTCATCCCCAGCCCTTAGTCAGCCAGTCTTCAGCATTAGGAGACTGACTCTCTTTACAAATGCTTaGTGGTCTGGGCAAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: WTSSPALSQPVFSIRRLTLFTNA*WSGQTS Trigger: AGAAGTTTGCCCAGACCACAAAGCATTTGTAAAGAG...AGTCAGTCTCCTAATGCTGAAGACTGGCTGACTAAGGGCTGGGGATGAAGTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS CCA 90 bp | ACCTGGGATAGTTGTCTGCCTGGAGTCCTCTTTACAAATGCTTTGTaGTCTGGGCAAACTTCTTCTTTCTGTGGGTTTCTTCAGGATTGC | + |
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Preference number: 5 (lower is better) Translates to: TWDSCLPGVLFTNAL*SGQTSSFCGFLQDC Trigger: GCAATCCTGAAGAAACCCACAGAAAGAAGAAGTTTGCCCAGACCACAAAGCATTTGTAAAGAGGACTCCAGGCAGACAACTATCCCAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | TCCACAGAAATGGCTGCTTGGTTACAGATGATGTCCAGAGGGGTAAAAGAAGAGGTGCGAACTCTCCGCTaGTTCTTTTTCTCTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: STEMAAWLQMMSRGVKEEVRTLR*FFFSSW Trigger: CCAAGAAGAGAAAAAGAACAAGCGGAGAGTTCGCAC...CTCTTCTTTTACCCCTCTGGACATCATCTGTAACCAAGCAGCCATTTCTGTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCACTGAGAGAGGAGAGTaGCTTGCTTGGAAAGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: SFLDCGSLMDCGVIFSEVTERGE*LAWKEK Trigger: TTTCTCTTTCCAAGCAAGCAACTCTCCTCTCTCAGT...GACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS CCA 90 bp | CCTCTTTACAAATGCTTTGTGGTCTGGGCAAACTTCTTCTTTCTGTaGGTTTCTTCAGGATTGCCTCAATGGAGAAGGACAAGCCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: PLYKCFVVWANFFFL*VSSGLPQWRRTSPD Trigger: ATCTGGGCTTGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCCACAGAAAGAAGAAGTTTGCCCAGACCACAAAGCATTTGTAAAGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGGACTGTGGGTCATTGATGGATTGTGGAGTGATTTTCTCTGAGGTCAGAGAGGAGAGTTGCTaGCTTGGAAAGAGAAAAATC | + |
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Preference number: 5 (lower is better) Translates to: SFLDCGSLMDCGVIFSEVREESC*LGKRKI Trigger: GATTTTTCTCTTTCCAAGCAAGCAACTCTCCTCTCT...GACCTCAGAGAAAATCACTCCACAATCCATCAATGACCCACAGTCCAGGAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174427.2 |
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| CDS TCA 72 bp | AGTGGGTGTCAGCACAGGACCAGACACGTCCATGTTTaGGGGCAGGGCCAAGCCGGCCTCACCAGGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: SGCQHRTRHVHV*GQGQAGLTRLL Trigger: CAGCAGCCTGGTGAGGCCGGCTTGGCCCTGCCCTCAAACATGGACGTGTCTGGTCCTGTGCTGACACCCACT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS GCA 72 bp | ATGTTTGAGGGCAGGGCCAAGCCGGCCTCACCAGGCTaGTGTGGGGCACTGAGGTTCCCACTCTTCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: MFEGRAKPASPG*CGALRFPLFSC Trigger: GCAGGAGAAGAGTGGGAACCTCAGTGCCCCACAGCAGCCTGGTGAGGCCGGCTTGGCCCTGCCCTCAAACAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS CAA 72 bp | CAGTGGGTGTCAGCACAGGACCAGACACGTCCATGTTaGAGGGCAGGGCCAAGCCGGCCTCACCAGGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: QWVSAQDQTRPC*RAGPSRPHQAA Trigger: AGCAGCCTGGTGAGGCCGGCTTGGCCCTGCCCTCAAACATGGACGTGTCTGGTCCTGTGCTGACACCCACTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034034.10 |
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| CDS TCA 72 bp | GGACAAGCCCAGATTCTCTGGGGCTTCACAGTATCCTaGACTCTTCTCCATGTCCCTGTGGATCGTAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GQAQILWGFTVS*TLLHVPVDRRA Trigger: GGCCCTACGATCCACAGGGACATGGAGAAGAGTTCAGGATACTGTGAAGCCCCAGAGAATCTGGGCTTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS CAA 90 bp | CCAGATCTGTACTCGAGCTTCAGGCAGGTTAATCCTGGAAGCCAATaGGGAACGGACATGGATGTCAGGGTAATGGGTGAAGTGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: PDLYSSFRQVNPGSQ*GTDMDVRVMGEVEE Trigger: CTCTTCCACTTCACCCATTACCCTGACATCCATGTCCGTTCCCAATTGGCTTCCAGGATTAACCTGCCTGAAGCTCGAGTACAGATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS CAA 72 bp | TACTCGAGCTTCAGGCAGGTTAATCCTGGAAGCCAATaGGGAACGGACATGGATGTCAGGGTAATGGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: YSSFRQVNPGSQ*GTDMDVRVMGE Trigger: TTCACCCATTACCCTGACATCCATGTCCGTTCCCAATTGGCTTCCAGGATTAACCTGCCTGAAGCTCGAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS CAA 90 bp | TTTGTGGTCTGGGCAAACTTCTTCTTTCTGTGGGTTTCTTCAGGATaGCCTCAATGGAGAAGGACAAGCCCAGATTCTCTGGGGCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: FVVWANFFFLWVSSG*PQWRRTSPDSLGLH Trigger: GTGAAGCCCCAGAGAATCTGGGCTTGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCCACAGAAAGAAGAAGTTTGCCCAGACCACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS CCA 72 bp | TCTGCCTGGAGTCCTCTTTACAAATGCTTTGTGGTCTaGGCAAACTTCTTCTTTCTGTGGGTTTCTTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: SAWSPLYKCFVV*ANFFFLWVSSG Trigger: TCCTGAAGAAACCCACAGAAAGAAGAAGTTTGCCCAGACCACAAAGCATTTGTAAAGAGGACTCCAGGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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| CDS CCA 72 bp | AAATGCTTTGTGGTCTGGGCAAACTTCTTCTTTCTGTaGGTTTCTTCAGGATTGCCTCAATGGAGAAGGACA | + |
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Preference number: 6 (lower is better) Translates to: KCFVVWANFFFL*VSSGLPQWRRT Trigger: TGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCCACAGAAAGAAGAAGTTTGCCCAGACCACAAAGCATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034034.10 ENSMUST00000174427.2 |
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