Pregenerated sensors for IST1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031729Ensembl transcript IDs: ENSMUST00000034164.6
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTCCCTGGGAATGGAATGGCCGGGAAAGAACCAAGGATCCACGTaGCAGGAAGACAGACAGGCAAACACAGCCAATAGGAGCCAACTG | + |
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Preference number: 1 (lower is better) Translates to: HSLGMEWPGKNQGST*QEDRQANTANRSQL Trigger: CAGTTGGCTCCTATTGGCTGTGTTTGCCTGTCTGTCTTCCTGTCACGTGGATCCTTGGTTCTTTCCCGGCCATTCCATTCCCAGGGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR CCA 90 bp | TTGAAACCCATCATAGGGTACTCTCTTCCATGGTCCAGCCATCTTTaGCAACTCTACCCACAATACTTCTCACTCCCTGGGAATGGAATG | + |
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Preference number: 1 (lower is better) Translates to: LKPIIGYSLPWSSHL*QLYPQYFSLPGNGM Trigger: CATTCCATTCCCAGGGAGTGAGAAGTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCATGGAAGAGAGTACCCTATGATGGGTTTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR CCA 90 bp | ACAGGTAAGCAAAAATCTCATCTTCCAATGCCAAAGCTAACCTCTTaGGGAAGGAGAGCCTTGGCTAGGGGCAAAGCAGCACAGAAGTTA | + |
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Preference number: 1 (lower is better) Translates to: TGKQKSHLPMPKLTS*GRRALARGKAAQKL Trigger: TAACTTCTGTGCTGCTTTGCCCCTAGCCAAGGCTCTCCTTCCCCAAGAGGTTAGCTTTGGCATTGGAAGATGAGATTTTTGCTTACCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR TCA 90 bp | CGGGAAAGAACCAAGGATCCACGTGACAGGAAGACAGACAGGCAAACACAGCCAGTCTCTCAGGATCACTaGAGAATCACTGAAGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: RERTKDPRDRKTDRQTQPVSQDH*RITEEV Trigger: CACTTCTTCAGTGATTCTTCAGTGATCCTGAGAGAC...TGGCTGTGTTTGCCTGTCTGTCTTCCTGTCACGTGGATCCTTGGTTCTTTCCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CCA 90 bp | CCATGGTCCAGCCATCTTTGGCAACTCTACCCACAATACTTCTCACTCCCTGGGTCAACTTCCAGAATGTaGATGCTGCCTGGTTTAAGA | + |
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Preference number: 2 (lower is better) Translates to: PWSSHLWQLYPQYFSLPGSTSRM*MLPGLR Trigger: TCTTAAACCAGGCAGCATCCACATTCTGGAAGTTGA...CCCAGGGAGTGAGAAGTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CCA 90 bp | GCAGACTACAGCGACATGGCACTAAAACTTAAGATGCCAGTTTGTAAAGAGTCCCTCACTCCCTGGGAATaGAATGGCCGGGAAAGAACC | + |
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Preference number: 2 (lower is better) Translates to: ADYSDMALKLKMPVCKESLTPWE*NGRERT Trigger: GGTTCTTTCCCGGCCATTCCATTCCCAGGGAGTGAG...GGACTCTTTACAAACTGGCATCTTAAGTTTTAGTGCCATGTCGCTGTAGTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR CAA 90 bp | GTTGAAACCCATCATAGGGTACTCTCTTCCATGGTCCAGCCATCTTaGGCAACTCTACCCACAATACTTCTCACTCCCTGGGAATGGAAT | + |
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Preference number: 2 (lower is better) Translates to: VETHHRVLSSMVQPS*ATLPTILLTPWEWN Trigger: ATTCCATTCCCAGGGAGTGAGAAGTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCATGGAAGAGAGTACCCTATGATGGGTTTCAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR TCA 90 bp | GAAGACAGACAGGCAAACACAGCCAATAGGAGCCAACTGCTCCAGCTAGAGTCTTCACTGAAGAATCACTaGAGAAGTGGAAAGCAACAC | + |
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Preference number: 2 (lower is better) Translates to: EDRQANTANRSQLLQLESSLKNH*RSGKQH Trigger: GTGTTGCTTTCCACTTCTTCAGTGATTCTTCAGTGA...AGACTCTAGCTGGAGCAGTTGGCTCCTATTGGCTGTGTTTGCCTGTCTGTCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CCA 90 bp | TTCCTGAGCCATCTTCTGACTCATGAGAAAACACATGGTAGCCTTGATTCTCTCTGGTCCAGCCATCTTTaGCAACTCTACCCACAATAC | + |
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Preference number: 2 (lower is better) Translates to: FLSHLLTHEKTHGSLDSLWSSHL*QLYPQY Trigger: GTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCA...GAGAGAATCAAGGCTACCATGTGTTTTCTCATGAGTCAGAAGATGGCTCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR GCA 90 bp | ATCAAAAACATTGACACTGAAGTTGCTGGAAACAGGTATGTACAGAAATACTACAGCCCCGAGGAAGAGTaGTCAGTGACGGTTAACAGA | + |
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Preference number: 2 (lower is better) Translates to: IKNIDTEVAGNRYVQKYYSPEEE*SVTVNR Trigger: TCTGTTAACCGTCACTGAGCACTCTTCCTCGGGGCT...GTAGTATTTCTGTACATACCTGTTTCCAGCAACTTCAGTGTCAATGTTTTTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CCA 90 bp | GGGGCAAAGCAGCACAGAAGTTACCATAATAAAGAGGTTCATCCACCCAGGAAAGAATCACTGAAGAAGTaGAAAGCAACACAATTGGTA | + |
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Preference number: 2 (lower is better) Translates to: GAKQHRSYHNKEVHPPRKESLKK*KATQLV Trigger: TACCAATTGTGTTGCTTTCCACTTCTTCAGTGATTC...TTTCCTGGGTGGATGAACCTCTTTATTATGGTAACTTCTGTGCTGCTTTGCCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR TCA 90 bp | ATCAAAAACATTGACACTGAAGTTGCTGGAAACAGGTATGTACAGAAATACTACAGGAAGAGTGCTCAGTaGCGGTTAACAGAGGAAACG | + |
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Preference number: 2 (lower is better) Translates to: IKNIDTEVAGNRYVQKYYRKSAQ*RLTEET Trigger: CGTTTCCTCTGTTAACCGTCACTGAGCACTCTTCCT...GTAGTATTTCTGTACATACCTGTTTCCAGCAACTTCAGTGTCAATGTTTTTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR TCA 72 bp | GGAATGGAATGGCCGGGAAAGAACCAAGGATCCACGTaGCAGGAAGACAGACAGGCAAACACAGCCAATAGG | + |
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Preference number: 3 (lower is better) Translates to: GMEWPGKNQGST*QEDRQANTANR Trigger: CCTATTGGCTGTGTTTGCCTGTCTGTCTTCCTGTCACGTGGATCCTTGGTTCTTTCCCGGCCATTCCATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR CCA 72 bp | CAAAAATCTCATCTTCCAATGCCAAAGCTAACCTCTTaGGGAAGGAGAGCCTTGGCTAGGGGCAAAGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: QKSHLPMPKLTS*GRRALARGKAA Trigger: TGCTGCTTTGCCCCTAGCCAAGGCTCTCCTTCCCCAAGAGGTTAGCTTTGGCATTGGAAGATGAGATTTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CAA 90 bp | GGGGCAAAGCAGCACAGAAGTTACCATAATAAAGAGGTTCATCCACCCAGGAAATGGAAAGCAACACAATaGGTAGAGCAGCAGAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: GAKQHRSYHNKEVHPPRKWKATQ*VEQQRA Trigger: GGCTCTCTGCTGCTCTACCAATTGTGTTGCTTTCCA...TTTCCTGGGTGGATGAACCTCTTTATTATGGTAACTTCTGTGCTGCTTTGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CAA 90 bp | TTCCTGAGCCATCTTCTGACTCATGAGAAAACACATGGTAGCCTTGATTCTCTCATGGTCCAGCCATCTTaGGCAACTCTACCCACAATA | + |
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Preference number: 3 (lower is better) Translates to: FLSHLLTHEKTHGSLDSLMVQPS*ATLPTI Trigger: TATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCAT...GAGAGAATCAAGGCTACCATGTGTTTTCTCATGAGTCAGAAGATGGCTCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR-3UTR CAA 90 bp | GCAGACTACAGCGACATGGCACTAAAACTTAAGATGCCAGTTTGTAAAGAGTCCAAACACATGGTAGCCTaGATTCTCTCTACGATCACC | + |
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Preference number: 3 (lower is better) Translates to: ADYSDMALKLKMPVCKESKHMVA*ILSTIT Trigger: GGTGATCGTAGAGAGAATCAAGGCTACCATGTGTTT...GGACTCTTTACAAACTGGCATCTTAAGTTTTAGTGCCATGTCGCTGTAGTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| 3UTR CCA 72 bp | TTAGGTAACGACCTGTACTTCCTTCCTAACATGCTATaGGGAAAAGCAAATTTCCACAGTGCTGTTCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: LGNDLYFLPNML*GKANFHSAVLS Trigger: GGAAAGAACAGCACTGTGGAAATTTGCTTTTCCCCATAGCATGTTAGGAAGGAAGTACAGGTCGTTACCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CCA 90 bp | CTACCCACAATACTTCTCACTCCCTGGGAATGGAATGGCCGGGAAAGAACCAAGGGGAGCATTTGGAGATaGCATGGGCATAGGCATGGG | + |
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Preference number: 4 (lower is better) Translates to: LPTILLTPWEWNGRERTKGSIWR*HGHRHG Trigger: CCCATGCCTATGCCCATGCCATCTCCAAATGCTCCC...CTTGGTTCTTTCCCGGCCATTCCATTCCCAGGGAGTGAGAAGTATTGTGGGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CCA 90 bp | CCATGGTCCAGCCATCTTTGGCAACTCTACCCACAATACTTCTCACTCCCTGGGTCTCCACTAGGATTTTaGGTGGGGCTTCTACGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PWSSHLWQLYPQYFSLPGSPLGF*VGLLRS Trigger: TGAGCGTAGAAGCCCCACCCAAAATCCTAGTGGAGA...CCCAGGGAGTGAGAAGTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CCA 90 bp | CCATGGTCCAGCCATCTTTGGCAACTCTACCCACAATACTTCTCACTCCCTGGGTCCACTGAAATCCGATaGTCCCTTTGGCAGTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: PWSSHLWQLYPQYFSLPGSTEIR*SLWQWV Trigger: TACCCACTGCCAAAGGGACCATCGGATTTCAGTGGA...CCCAGGGAGTGAGAAGTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCATGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CCA 90 bp | CTACCCACAATACTTCTCACTCCCTGGGAATGGAATGGCCGGGAAAGAACCAAGCTGGTAAGTCCCCACTaGCAATCCACTGAAATCCGA | + |
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Preference number: 4 (lower is better) Translates to: LPTILLTPWEWNGRERTKLVSPH*QSTEIR Trigger: TCGGATTTCAGTGGATTGCCAGTGGGGACTTACCAG...CTTGGTTCTTTCCCGGCCATTCCATTCCCAGGGAGTGAGAAGTATTGTGGGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR TCA 90 bp | CTTCTGACTCATGAGAAAACACATGGTAGCCTTGATTCTCTCTACGATCACCCCCAGGAGCTTCTGCCATaGCCACAGAGTCAGGTTCGT | + |
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Preference number: 4 (lower is better) Translates to: LLTHEKTHGSLDSLYDHPQELLP*PQSQVR Trigger: ACGAACCTGACTCTGTGGTCATGGCAGAAGCTCCTG...GGGGTGATCGTAGAGAGAATCAAGGCTACCATGTGTTTTCTCATGAGTCAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CCA 90 bp | GTCACTGTTACACGGAGAACTGTTCACTATCAACTTCCAGAATGTGGATGCTGCATCCGATGGTCCCTTTaGCAGTGGGTATGCGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: VTVTRRTVHYQLPECGCCIRWSL*QWVCEG Trigger: CCCTTCGCATACCCACTGCCAAAGGGACCATCGGAT...GCAGCATCCACATTCTGGAAGTTGATAGTGAACAGTTCTCCGTGTAACAGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR TCA 90 bp | CCATGGTCCAGCCATCTTTGGCAACTCTACCCACAATACTTCTCACTCCCTGGGTATTTGGCACAGAGCTaGTCGGCAACTATTTTCAAC | + |
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Preference number: 4 (lower is better) Translates to: PWSSHLWQLYPQYFSLPGYLAQS*SATIFN Trigger: GTTGAAAATAGTTGCCGATCAGCTCTGTGCCAAATA...CCCAGGGAGTGAGAAGTATTGTGGGTAGAGTTGCCAAAGATGGCTGGACCATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR TCA 90 bp | GAAGAATCACTGAAGAAGTGGAAAGCAACACAATTGGTAGAGCAGCAGAGAGCCCCACTGGCAATCCACTaGAATCCGATGGTCCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: EESLKKWKATQLVEQQRAPLAIH*NPMVPL Trigger: CAAAGGGACCATCGGATTTCAGTGGATTGCCAGTGG...GGCTCTCTGCTGCTCTACCAATTGTGTTGCTTTCCACTTCTTCAGTGATTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CCA 90 bp | GCAGACTACAGCGACATGGCACTAAAACTTAAGATGCCAGTTTGTAAAGAGTCCAATTATCCACAGGTCTaGAAGGGGGCTTTGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: ADYSDMALKLKMPVCKESNYPQV*KGALQE Trigger: CTCCTGCAAAGCCCCCTTCCAGACCTGTGGATAATT...GGACTCTTTACAAACTGGCATCTTAAGTTTTAGTGCCATGTCGCTGTAGTCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS CCA 90 bp | CTGGTAAGTCCCCACTGGCAATCCACTGAAATCCGATGGTCCCTTTaGCAGTGGGTATGCGAAGGGAGCATTTGGAGATGGCATGGGCAT | + |
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Preference number: 5 (lower is better) Translates to: LVSPHWQSTEIRWSL*QWVCEGSIWRWHGH Trigger: ATGCCCATGCCATCTCCAAATGCTCCCTTCGCATACCCACTGCCAAAGGGACCATCGGATTTCAGTGGATTGCCAGTGGGGACTTACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CAA 90 bp | TCCAATGAAAACAAGTACCCCTCCTCTCCTGCAGGCTTCCAGATCTCTACCCAAAATCCGATGGTCCCTTaGGCAGTGGGTATGCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: SNENKYPSSPAGFQISTQNPMVP*AVGMRR Trigger: CCTTCGCATACCCACTGCCAAAGGGACCATCGGATT...TTGGGTAGAGATCTGGAAGCCTGCAGGAGAGGAGGGGTACTTGTTTTCATTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CAA 90 bp | GAAGAATCACTGAAGAAGTGGAAAGCAACACAATTGGTAGAGCAGCAGAGAGCCCTCTCCACTAGGATTTaGGGTGGGGCTTCTACGCTC | + |
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Preference number: 5 (lower is better) Translates to: EESLKKWKATQLVEQQRALSTRI*GGASTL Trigger: GAGCGTAGAAGCCCCACCCAAAATCCTAGTGGAGAG...GGCTCTCTGCTGCTCTACCAATTGTGTTGCTTTCCACTTCTTCAGTGATTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CAA 90 bp | GTCACTGTTACACGGAGAACTGTTCACTATCAACTTCCAGAATGTGGATGCTGCGCAGGAGCTTCTGGCTaGGGTCCAACAATCTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: VTVTRRTVHYQLPECGCCAGASG*GPTICA Trigger: TGCACAGATTGTTGGACCCAAGCCAGAAGCTCCTGC...GCAGCATCCACATTCTGGAAGTTGATAGTGAACAGTTCTCCGTGTAACAGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CAA 90 bp | GCAGACTACAGCGACATGGCACTAAAACTTAAGATGCCAGTTTGTAAAGAGTCCTTGGTCCTGCACAACTaGCCATATTCCTTGCTGTAT | + |
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Preference number: 5 (lower is better) Translates to: ADYSDMALKLKMPVCKESLVLHN*PYSLLY Trigger: ATACAGCAAGGAATATGGCAAGTTGTGCAGGACCAA...GGACTCTTTACAAACTGGCATCTTAAGTTTTAGTGCCATGTCGCTGTAGTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS-3UTR CAA 90 bp | TTCCTGAGCCATCTTCTGACTCATGAGAAAACACATGGTAGCCTTGATTCTCTCGCTTCTACGCTCAGTTaGTGCATTAGCCTATCATTC | + |
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Preference number: 5 (lower is better) Translates to: FLSHLLTHEKTHGSLDSLASTLS*CISLSF Trigger: GAATGATAGGCTAATGCACAAACTGAGCGTAGAAGC...GAGAGAATCAAGGCTACCATGTGTTTTCTCATGAGTCAGAAGATGGCTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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| CDS CCA 72 bp | CCCCACTGGCAATCCACTGAAATCCGATGGTCCCTTTaGCAGTGGGTATGCGAAGGGAGCATTTGGAGATGG | + |
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Preference number: 6 (lower is better) Translates to: PHWQSTEIRWSL*QWVCEGSIWRW Trigger: CCATCTCCAAATGCTCCCTTCGCATACCCACTGCCAAAGGGACCATCGGATTTCAGTGGATTGCCAGTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034164.6 |
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