Pregenerated sensors for ISG20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039236Ensembl transcript IDs: ENSMUST00000038142.15, ENSMUST00000118867.8, ENSMUST00000120331.4, ENSMUST00000121645.8, ENSMUST00000205981.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCGCTCAGTCTGTCCACGTGTCCCTGAGGTCCCTGACTCGGGTTTaGGAGGGGTGTCAGCAGGTGACTAGAGCTGGACAGGGCAGAAAT | + |
|
Preference number: 1 (lower is better) Translates to: AAQSVHVSLRSLTRV*EGCQQVTRAGQGRN Trigger: ATTTCTGCCCTGTCCAGCTCTAGTCACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGACCTCAGGGACACGTGGACAGACTGAGCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| 3UTR TCA 90 bp | AAGTTCAGTCTGACGTCCCAGGGCAAGGCAGCCCTCGCTGGGCTCTaGGTCGCTGAGAGATTTTGTAGAGCTCCATTGTGGCCCTGGCAT | + |
|
Preference number: 1 (lower is better) Translates to: KFSLTSQGKAALAGL*VAERFCRAPLWPWH Trigger: ATGCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAGACTGAACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| 3UTR-3UTR CCA 90 bp | TCGCTGGGCTCTGAGTCGCTGAGAGATTTTGTAGAGCTCCATTGTGGCCCTGGCACTCTCCGGGAGCAGTaGGCAAGCGAGGCAGCTCGG | + |
|
Preference number: 2 (lower is better) Translates to: SLGSESLRDFVELHCGPGTLREQ*ASEAAR Trigger: CCGAGCTGCCTCGCTTGCCCACTGCTCCCGGAGAGT...GCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| 3UTR-3UTR CCA 90 bp | TCGCTGGGCTCTGAGTCGCTGAGAGATTTTGTAGAGCTCCATTGTGGCCCTGGCTCCCTGACTCGGGTTTaGGAGGGGTGTCAGCAGGTG | + |
|
Preference number: 2 (lower is better) Translates to: SLGSESLRDFVELHCGPGSLTRV*EGCQQV Trigger: CACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGA...GCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGGAGAACTTGAGGAGTaGCAGCTTCTAACCCTGGAT | + |
|
Preference number: 2 (lower is better) Translates to: KRVAVMGECSWFYTLRWLGELEE*QLLTLD Trigger: ATCCAGGGTTAGAAGCTGCCACTCCTCAAGTTCTCC...CAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 |
||
| 3UTR-3UTR CCA 90 bp | CAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGAGAACTTGAGGAGTaGCAGCTTCTAACCCTGGAT | + |
|
Preference number: 2 (lower is better) Translates to: QESCCNGGVFLVLHIAVVGELEE*QLLTLD Trigger: ATCCAGGGTTAGAAGCTGCCACTCCTCAAGTTCTCC...AACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 |
||
| 3UTR CAA 90 bp | GTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTaGGTGGCAGTGGTTGTTAGAAACAGGTCTCATTCATGGAGAACT | + |
|
Preference number: 2 (lower is better) Translates to: VAVMGECSWFYTLRW*VAVVVRNRSHSWRT Trigger: AGTTCTCCATGAATGAGACCTGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| 3UTR CAA 90 bp | AGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATaGCGGTGGTTGGTGGCAGTGGTTGTTAGAAACAGGTCTCATTCA | + |
|
Preference number: 2 (lower is better) Translates to: SKRVAVMGECSWFYT*RWLVAVVVRNRSHS Trigger: TGAATGAGACCTGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| 3UTR CCA 72 bp | TCTGTCCACGTGTCCCTGAGGTCCCTGACTCGGGTTTaGGAGGGGTGTCAGCAGGTGACTAGAGCTGGACAG | + |
|
Preference number: 3 (lower is better) Translates to: SVHVSLRSLTRV*EGCQQVTRAGQ Trigger: CTGTCCAGCTCTAGTCACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGACCTCAGGGACACGTGGACAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| 3UTR TCA 72 bp | CTGACGTCCCAGGGCAAGGCAGCCCTCGCTGGGCTCTaGGTCGCTGAGAGATTTTGTAGAGCTCCATTGTGG | + |
|
Preference number: 3 (lower is better) Translates to: LTSQGKAALAGL*VAERFCRAPLW Trigger: CCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| 3UTR CCA 72 bp | TGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTaGTGGCAGTGGTTGTTAGAAACAGGTCTCATTCAT | + |
|
Preference number: 3 (lower is better) Translates to: WGSVLGFTHCGG*WQWLLETGLIH Trigger: ATGAATGAGACCTGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| 3UTR CCA 72 bp | GTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTaGTTGGTGGCAGTGGTTGTTAGAAACAGGTCTCAT | + |
|
Preference number: 3 (lower is better) Translates to: VMGECSWFYTLR*LVAVVVRNRSH Trigger: ATGAGACCTGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCTCAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGGTTGGTGGCAGTGGTaGTTAGAAACAGGTCTCATT | + |
|
Preference number: 3 (lower is better) Translates to: ASKQESCCNGGVFLVLHIGWWQW*LETGLI Trigger: AATGAGACCTGTTTCTAACAACCACTGCCACCAACC...AATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | CTGGACAGGGCAGAAATAACAGCGTGCGAGCGAGCAGAAGCAAGACTCTCCGGGAGGCCACTCACCCTTTaGGGCCCAAGCCCCACCATC | + |
|
Preference number: 4 (lower is better) Translates to: LDRAEITACERAEARLSGRPLTL*GPSPTI Trigger: GATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCT...CCCGGAGAGTCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTGTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS-3UTR CCA 90 bp | CAGAGCAGTGGCCCCGCCAGTTGTTCTGCAGACACAGGGAGAGCAGGAGCTAAGCTTCACCAAATGGCGTaGCCCTCACCATGTGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: QSSGPASCSADTGRAGAKLHQMA*PSPCAE Trigger: CTCAGCACATGGTGAGGGCCACGCCATTTGGTGAAG...CTTAGCTCCTGCTCTCCCTGTGTCTGCAGAACAACTGGCGGGGCCACTGCTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS-3UTR TCA 90 bp | TGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTGCCCTCACCATGTGCTaGGGCGTGACCCCGCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: CNGGVFLVLHIAVVGGSGALTMC*GVTPLT Trigger: AGTCAGCGGGGTCACGCCTCAGCACATGGTGAGGGC...ACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | GGACAGGGCAGAAATAACAGCGTGCGAGCGAGCAGAAGCAAGACTCTCCGGGAGCCTCCTTCAGGGCATTaGAGTCGTGCTTCAGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: GQGRNNSVRASRSKTLREPPSGH*SRASGH Trigger: ATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGG...CTCCCGGAGAGTCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS-3UTR GCA 90 bp | GTGACTAGAGCTGGACAGGGCAGAAATAACAGCGTGCGAGCGAGCAGAAGCAAGTGCAGCTTGGCCTCATaGCACAGCAGCCTGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: VTRAGQGRNNSVRASRSKCSLAS*HSSLSV Trigger: CACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCA...CTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTGTCCAGCTCTAGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS-3UTR CCA 90 bp | GTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTCTGCCTCCCCAGTCCTaGAGCTGGCCGCTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: VMGECSWFYTLRWLVAVVLPPQS*SWPLSL Trigger: CAGACTGAGCGGCCAGCTCCAGGACTGGGGAGGCAG...AACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | AGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGGCCACTCACCCTTTaGGGCCCAAGCCCCACCATC | + |
|
Preference number: 4 (lower is better) Translates to: SCCNGGVFLVLHIAVVGGRPLTL*GPSPTI Trigger: GATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCT...GCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | TGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTAGGGGTGTCAGCAGGTaGCTAGAGCTGGACAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: CCNGGVFLVLHIAVVGGSRGVSR*LELDRA Trigger: TGCCCTGTCCAGCTCTAGTCACCTGCTGACACCCCT...ACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | AAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGACTCTCCGGGAGCAGTaGGCAAGCGAGGCAGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: KRVAVMGECSWFYTLRWLTLREQ*ASEAAR Trigger: CCGAGCTGCCTCGCTTGCCCACTGCTCCCGGAGAGT...CAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | AAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGAGGCCACTCACCCTTTaGGGCCCAAGCCCCACCATC | + |
|
Preference number: 4 (lower is better) Translates to: KQESCCNGGVFLVLHIAVRPLTL*GPSPTI Trigger: GATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCT...CACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR GCA 90 bp | TGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTTGCAGCTTGGCCTCATaGCACAGCAGCCTGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CCNGGVFLVLHIAVVGGSCSLAS*HSSLSV Trigger: CACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCA...ACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | TGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTCGTGCTTCAGGTCATaGCCCACCACCAGCTTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: CNGGVFLVLHIAVVGGSGSCFRS*PTTSLP Trigger: AGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGA...ACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR GCA 90 bp | AGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTGCAGCTTGGCCTCATaGCACAGCAGCCTGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SKRVAVMGECSWFYTLRWCSLAS*HSSLSV Trigger: CACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCA...CCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR GCA 90 bp | AGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTGTTAGAAACACAGGAGCTAAGGGGCTaGCTCCCCAGTCCTGGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SVLGFTHCGGWWQWLLETQELRG*LPSPGA Trigger: AGCTCCAGGACTGGGGAGGCAGCCCCTTAGCTCCTG...TGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR GCA 90 bp | CAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTCCCCGCCAGTTGTTCTaGAGACACAGGGAGAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QESCCNGGVFLVLHIAVVPRQLF*RHRESR Trigger: CCTGCTCTCCCTGTGTCTGCAGAACAACTGGCGGGG...AACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | TGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTCTTCACCAAATGGCGTaGCCCTCACCATGTGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: CCNGGVFLVLHIAVVGGSLHQMA*PSPCAE Trigger: CTCAGCACATGGTGAGGGCCACGCCATTTGGTGAAG...ACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | GAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTGTTAGAAACTCCCTGACTCGGGTTTaGGAGGGGTGTCAGCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ECSWFYTLRWLVAVVVRNSLTRV*EGCQQV Trigger: CACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGA...GTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | TTGTTGTTGTTTTTGCCTCAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTAGGCCACTCACCCTTTaGGGCCCAAGCCCCACCATC | + |
|
Preference number: 4 (lower is better) Translates to: LLLFLPQSKRVAVMGECSRPLTL*GPSPTI Trigger: GATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCT...AGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGAGGCAAAAACAACAACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 |
||
| CDS-3UTR TCA 90 bp | TGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTCCTCCTTCAGGGCATTaGAGTCGTGCTTCAGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: CNGGVFLVLHIAVVGGSGPPSGH*SRASGH Trigger: ATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGG...ACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR GCA 90 bp | CAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGCAGCTTGGCCTCATaGCACAGCAGCCTGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: QSKRVAVMGECSWFYTLRCSLAS*HSSLSV Trigger: CACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCA...CCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | AAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGCTTCACCAAATGGCGTaGCCCTCACCATGTGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KRVAVMGECSWFYTLRWLLHQMA*PSPCAE Trigger: CTCAGCACATGGTGAGGGCCACGCCATTTGGTGAAG...CAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | CAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTCTGCCAGGCAGGACCTaGATGTTCTTGTGTAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QESCCNGGVFLVLHIAVVLPGRT*MFLCSR Trigger: CCTGCTACACAAGAACATCCAGGTCCTGCCTGGCAG...AACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | GTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAAAGGATGTCAGTGCCTaGCAAGATGCATCCTCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: VAVMGECSWFYTLRWLVAKDVSA*QDASSN Trigger: GTTGGAGGATGCATCTTGCCAGGCACTGACATCCTT...TGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | CAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGCCTCCTTCAGGGCATTaGAGTCGTGCTTCAGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QSKRVAVMGECSWFYTLRPPSGH*SRASGH Trigger: ATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGG...CCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR TCA 90 bp | CAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTCCTCCTTCAGGGCATTaGAGTCGTGCTTCAGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QESCCNGGVFLVLHIAVVPPSGH*SRASGH Trigger: ATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGG...AACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CCA 90 bp | GCCTCAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTCTTCACCAAATGGCGTaGCCCTCACCATGTGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: ASKQESCCNGGVFLVLHILHQMA*PSPCAE Trigger: CTCAGCACATGGTGAGGGCCACGCCATTTGGTGAAG...AATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR GCA 90 bp | GCCTCAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCAGAAATAACAGCGTaGGAGCGAGCAGAAGCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ASKQESCCNGGVFLVLHIAEITA*ERAEAR Trigger: TCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGC...AATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| 3UTR CAA 72 bp | ATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTaGGTGGCAGTGGTTGTTAGAAACAGGTCTCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: MGECSWFYTLRW*VAVVVRNRSHS Trigger: TGAATGAGACCTGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| 3UTR CAA 72 bp | TTGGTTTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTaGTTTTTGCCTCAAAGCAAGAGAGTTGCTGTAATG | + |
|
Preference number: 4 (lower is better) Translates to: LVLLLLLLLLLL*FLPQSKRVAVM Trigger: CATTACAGCAACTCTCTTGCTTTGAGGCAAAAACAACAACAACAACAACAACAACAACAACAGCAAAACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038142.15 |
||
| CDS-3UTR CAA 90 bp | GATGAGGATGAAGTTCAGTCTGACGTCCCAGGGCAAGGCAGCCCTCGCTGGGCTGAGGCCACTCACCCTTaGAGGCCCAAGCCCCACCAT | + |
|
Preference number: 5 (lower is better) Translates to: DEDEVQSDVPGQGSPRWAEATHP*RPKPHH Trigger: ATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTC...AGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAGACTGAACTTCATCCTCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS-3UTR CAA 90 bp | GATGAGGATGAAGTTCAGTCTGACGTCCCAGGGCAAGGCAGCCCTCGCTGGGCTTGGCCCACCACCAGCTaGCCTTTCAGAAGCTGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: DEDEVQSDVPGQGSPRWAWPTTS*PFRSCR Trigger: CCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCA...AGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAGACTGAACTTCATCCTCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS CCA 90 bp | GTGGCCCTGGCATCTTCCACAGAGCAGTGGCCCCGCCAGTTGTTCTaGATGTTCTTGTGTAGCAGGCGCTTACACAGCAGCCTCAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: VALASSTEQWPRQLF*MFLCSRRLHSSLRD Trigger: GTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAGAACAACTGGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 |
||
| CDS CCA 90 bp | GGCAAGATGCATCCTCCAACCCCCAAGAGGCTGCCAGGCAGGACCTaGATGTTCTTGTGTAGCAGGCGCTTACACAGCAGCCTCAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: GKMHPPTPKRLPGRT*MFLCSRRLHSSLRD Trigger: GTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAGGTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS GCA 90 bp | GGATGTACTTGTCATACAGGACTGCGCCATGGATGTTCACAATGCTaGAGCGGGCGAGGCCACTCACCCTTTGAGGCCCAAGCCCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: GCTCHTGLRHGCSQC*SGRGHSPFEAQAPP Trigger: TGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS GCA 90 bp | GTCGGATGTACTTGTCATACAGGACTGCGCCATGGATGTTCACAATaGTGCAGCGGGCGAGGCCACTCACCCTTTGAGGCCCAAGCCCCA | + |
|
Preference number: 5 (lower is better) Translates to: VGCTCHTGLRHGCSQ*CSGRGHSPFEAQAP Trigger: TGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CCA 90 bp | GCTTACACAGCAGCCTCAGGGACACTCGGCTGTAGTACTGCAGCTTaGCCTCATGCCACAGCAGCCTGTCTGTGGACGTGTCATAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: AYTAASGTLGCSTAA*PHATAACLWTCHRW Trigger: CCATCTATGACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CCA 90 bp | CCTGACCATTCCGACATAGAGCAGAAGATGAAGGATGTCAGTGCCTaGCAAGATGCATCCTCCAACCCCCAAGAGGCTGCCAGGCAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: PDHSDIEQKMKDVSA*QDASSNPQEAARQD Trigger: GTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCACTGACATCCTTCATCTTCTGCTCTATGTCGGAATGGTCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | GCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGAGGCCACTCACCCTTaGAGGCCCAAGCCCCACCAT | + |
|
Preference number: 5 (lower is better) Translates to: AVMGECSWFYTLRWLVAVEATHP*RPKPHH Trigger: ATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTC...CACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | GGACAGGGCAGAAATAACAGCGTGCGAGCGAGCAGAAGCAAGACTCTCCGGGAGTCCTCCTTCAGGGCATaGAAGTCGTGCTTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: GQGRNNSVRASRSKTLRESSFRA*KSCFRS Trigger: TGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGA...CTCCCGGAGAGTCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205981.2 |
||
| CDS CCA 90 bp | GGCTGTAGTACTGCAGCTTGGCCTCATGCCACAGCAGCCTGTCTGTaGACGTGTCATAGATGGTGTACTTGCTCATATCCTCCTTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GCSTAAWPHATAACL*TCHRWCTCSYPPSG Trigger: CCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGTACTACAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS-3UTR CAA 90 bp | AGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGGAGGCCACTCACCCTTaGAGGCCCAAGCCCCACCAT | + |
|
Preference number: 5 (lower is better) Translates to: SKRVAVMGECSWFYTLRWEATHP*RPKPHH Trigger: ATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTC...CCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | ACAGGTCTCATTCATGGAGAACTTGAGGAGTGGCAGCTTCTAACCCTGGATGAGTGGCCCACCACCAGCTaGCCTTTCAGAAGCTGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: TGLIHGELEEWQLLTLDEWPTTS*PFRSCR Trigger: CCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCA...CTCATCCAGGGTTAGAAGCTGCCACTCCTCAAGTTCTCCATGAATGAGACCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 |
||
| CDS-3UTR CAA 90 bp | GGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTGTTAGAAGTCCCTGACTCGGGTTaGGGAGGGGTGTCAGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: GSVLGFTHCGGWWQWLLEVPDSG*GGVSAG Trigger: ACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGAC...TTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CCA 90 bp | TTGCTCATATCCTCCTTCAGGGCATTGAAGTCGTGCTTCAGGTCATaGCCCACCACCAGCTTGCCTTTCAGAAGCTGCAGGATCTCTAGC | + |
|
Preference number: 5 (lower is better) Translates to: LLISSFRALKSCFRS*PTTSLPFRSCRISS Trigger: GCTAGAGATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGATATGAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS-3UTR CAA 90 bp | ACAGGTCTCATTCATGGAGAACTTGAGGAGTGGCAGCTTCTAACCCTGGATGAGCGTGACCCCGCTGACTaGGGTTCTGTAGTCCGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: TGLIHGELEEWQLLTLDERDPAD*GSVVRD Trigger: ATCACGGACTACAGAACCCAAGTCAGCGGGGTCACG...CTCATCCAGGGTTAGAAGCTGCCACTCCTCAAGTTCTCCATGAATGAGACCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 |
||
| CDS TCA 90 bp | ACGTGTCATAGATGGTGTACTTGCTCATATCCTCCTTCAGGGCATTaGAGTCGTGCTTCAGGTCATGGCCCACCACCAGCTTGCCTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: TCHRWCTCSYPPSGH*SRASGHGPPPACLS Trigger: TGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS-3UTR CAA 90 bp | AAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGCGTGACCCCGCTGACTaGGGTTCTGTAGTCCGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: KRVAVMGECSWFYTLRWLRDPAD*GSVVRD Trigger: ATCACGGACTACAGAACCCAAGTCAGCGGGGTCACG...CAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | AGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTGTTAGAAACATGGCCCACCACCAGCTaGCCTTTCAGAAGCTGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SVLGFTHCGGWWQWLLETWPTTS*PFRSCR Trigger: CCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCA...TGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | TCAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGTGGCCCACCACCAGCTaGCCTTTCAGAAGCTGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SKQESCCNGGVFLVLHIAWPTTS*PFRSCR Trigger: CCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCA...CGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | AGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCTCCTCCTTCAGGGCATaGAAGTCGTGCTTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SCCNGGVFLVLHIAVVGGSSFRA*KSCFRS Trigger: TGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGA...GCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | AAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGGTGGTTGTCCTCCTTCAGGGCATaGAAGTCGTGCTTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: KRVAVMGECSWFYTLRWLSSFRA*KSCFRS Trigger: TGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGA...CAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | AGTGTTCTTGGTTTTACACATTGCGGTGGTTGGTGGCAGTGGTTGTTAGAAACATCCTCCTTCAGGGCATaGAAGTCGTGCTTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SVLGFTHCGGWWQWLLETSSFRA*KSCFRS Trigger: TGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGA...TGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000120331.4 ENSMUST00000121645.8 |
||
| CDS-3UTR CAA 90 bp | TCAAAGCAAGAGAGTTGCTGTAATGGGGGAGTGTTCTTGGTTTTACACATTGCGAGGACCTGGATGTTCTaGTGTAGCAGGCGCTTACAC | + |
|
Preference number: 5 (lower is better) Translates to: SKQESCCNGGVFLVLHIARTWMF*CSRRLH Trigger: GTGTAAGCGCCTGCTACACAAGAACATCCAGGTCCT...CGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CAA 90 bp | CATCCTCCAACCCCCAAGAGGCTGCCAGGCAGGACCTGGATGTTCTaGTGTAGCAGGCGCTTACACAGCAGCCTCAGGGACACTCGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: HPPTPKRLPGRTWMF*CSRRLHSSLRDTRL Trigger: CAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAGGTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CCA 72 bp | GCAGCCTCAGGGACACTCGGCTGTAGTACTGCAGCTTaGCCTCATGCCACAGCAGCCTGTCTGTGGACGTGT | + |
|
Preference number: 6 (lower is better) Translates to: AASGTLGCSTAA*PHATAACLWTC Trigger: ACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CAA 72 bp | ACCCCCAAGAGGCTGCCAGGCAGGACCTGGATGTTCTaGTGTAGCAGGCGCTTACACAGCAGCCTCAGGGAC | + |
|
Preference number: 6 (lower is better) Translates to: TPKRLPGRTWMF*CSRRLHSSLRD Trigger: GTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAGGTCCTGCCTGGCAGCCTCTTGGGGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS GCA 72 bp | TGCCTGGCAAGATGCATCCTCCAACCCCCAAGAGGCTaGCAGGCAGGACCTGGATGTTCTTGTGTAGCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: CLARCILQPPRG*QAGPGCSCVAG Trigger: GCCTGCTACACAAGAACATCCAGGTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CCA 72 bp | CATCCTCCAACCCCCAAGAGGCTGCCAGGCAGGACCTaGATGTTCTTGTGTAGCAGGCGCTTACACAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: HPPTPKRLPGRT*MFLCSRRLHSS Trigger: GCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAGGTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CAA 90 bp | AAATGGCGTGGCCCTCACCATGTGCTGAGGCGTGACCCCGCTGACTaGGGTTCTGTAGTCCGTGATCTCTCCCTCGGGTCGGATGTACTT | + |
|
Preference number: 6 (lower is better) Translates to: KWRGPHHVLRRDPAD*GSVVRDLSLGSDVL Trigger: AAGTACATCCGACCCGAGGGAGAGATCACGGACTACAGAACCCAAGTCAGCGGGGTCACGCCTCAGCACATGGTGAGGGCCACGCCATTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS GCA 72 bp | CTCTCCCTCGGGTCGGATGTACTTGTCATACAGGACTaGGCCATGGATGTTCACAATGCTGCAGCGGGCGAG | + |
|
Preference number: 6 (lower is better) Translates to: LSLGSDVLVIQD*AMDVHNAAAGE Trigger: CTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGACCCGAGGGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CCA 72 bp | TCGGGTCGGATGTACTTGTCATACAGGACTGCGCCATaGATGTTCACAATGCTGCAGCGGGCGAGGCCACTC | + |
|
Preference number: 6 (lower is better) Translates to: SGRMYLSYRTAP*MFTMLQRARPL Trigger: GAGTGGCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGACCCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CAA 72 bp | GCCCTGGCATCTTCCACAGAGCAGTGGCCCCGCCAGTaGTTCTGGATGTTCTTGTGTAGCAGGCGCTTACAC | + |
|
Preference number: 6 (lower is better) Translates to: ALASSTEQWPRQ*FWMFLCSRRLH Trigger: GTGTAAGCGCCTGCTACACAAGAACATCCAGAACAACTGGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 |
||
| CDS GCA 72 bp | AGGTCATGGCCCACCACCAGCTTGCCTTTCAGAAGCTaGAGGATCTCTAGCCTGGCTTCACCAAATGGCGTG | + |
|
Preference number: 6 (lower is better) Translates to: RSWPTTSLPFRS*RISSLASPNGV Trigger: CACGCCATTTGGTGAAGCCAGGCTAGAGATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS GCA 72 bp | AGAGCAGAAGATGAAGGATGTCAGTGCCTGGCAAGATaGATCCTCCAACCCCCAAGAGGCTGCCAGGCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: RAEDEGCQCLAR*ILQPPRGCQAG Trigger: TCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCACTGACATCCTTCATCTTCTGCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CCA 72 bp | TCCTCCTTCAGGGCATTGAAGTCGTGCTTCAGGTCATaGCCCACCACCAGCTTGCCTTTCAGAAGCTGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SSFRALKSCFRS*PTTSLPFRSCR Trigger: CCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CCA 72 bp | GCATCTTCCACAGAGCAGTGGCCCCGCCAGTTGTTCTaGATGTTCTTGTGTAGCAGGCGCTTACACAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ASSTEQWPRQLF*MFLCSRRLHSS Trigger: GCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAGAACAACTGGCGGGGCCACTGCTCTGTGGAAGATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 |
||
| CDS CCA 72 bp | TCCGACATAGAGCAGAAGATGAAGGATGTCAGTGCCTaGCAAGATGCATCCTCCAACCCCCAAGAGGCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SDIEQKMKDVSA*QDASSNPQEAA Trigger: GGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCACTGACATCCTTCATCTTCTGCTCTATGTCGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121645.8 |
||
| CDS CAA 90 bp | TTCAGGGCATTGAAGTCGTGCTTCAGGTCATGGCCCACCACCAGCTaGCCTTTCAGAAGCTGCAGGATCTCTAGCCTGGCTTCACCAAAT | + |
|
Preference number: 6 (lower is better) Translates to: FRALKSCFRSWPTTS*PFRSCRISSLASPN Trigger: ATTTGGTGAAGCCAGGCTAGAGATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS TCA 72 bp | AGATGGTGTACTTGCTCATATCCTCCTTCAGGGCATTaGAGTCGTGCTTCAGGTCATGGCCCACCACCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RWCTCSYPPSGH*SRASGHGPPPA Trigger: AGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||
| CDS CCA 72 bp | ACTGCAGCTTGGCCTCATGCCACAGCAGCCTGTCTGTaGACGTGTCATAGATGGTGTACTTGCTCATATCCT | + |
|
Preference number: 6 (lower is better) Translates to: TAAWPHATAACL*TCHRWCTCSYP Trigger: AGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000038142.15 ENSMUST00000118867.8 ENSMUST00000120331.4 ENSMUST00000121645.8 ENSMUST00000205981.2 |
||