Pregenerated sensors for ISCA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021241Ensembl transcript IDs: ENSMUST00000021667.7, ENSMUST00000222022.2, ENSMUST00000222982.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGAGGTGCTACAAATTATACTGGGTTCCAACCAGTGATTACAGGTGAGGTAACACTTTGGATGTGGCCTTaGCATTGTACTGGGGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: RGATNYTGFQPVITGEVTLWMWP*HCTGGG Trigger: CCCTCCCCCAGTACAATGTCAAGGCCACATCCAAAG...TGTTACCTCACCTGTAATCACTGGTTGGAACCCAGTATAATTTGTAGCACCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGGAGAGTATTTCGGCCAAGAGTTAAAAGCTTCACATTCCATAATTTACAGTCTAGGTTGTTCACACTaGTGCAGTGGTGGCAATCTC | + |
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Preference number: 2 (lower is better) Translates to: RGEYFGQELKASHSIIYSLGCSH*CSGGNL Trigger: GAGATTGCCACCACTGCACCAGTGTGAACAACCTAG...ACTGTAAATTATGGAATGTGAAGCTTTTAACTCTTGGCCGAAATACTCTCCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAAACCTCTCAGCCTTGCTGGGCTTaGGGGTTATTCAACACTTGG | + |
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Preference number: 2 (lower is better) Translates to: FWIKLNKMRAGHDEKETSQPCWA*GLFNTW Trigger: CCAAGTGTTGAATAACCCTCAAGCCCAGCAAGGCTG...AGAGGTTTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222022.2 |
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| 3UTR-3UTR CCA 90 bp | AGACACTTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAACTAGGTTGTTCACACTaGTGCAGTGGTGGCAATCTC | + |
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Preference number: 2 (lower is better) Translates to: RHFWIKLNKMRAGHDEKELGCSH*CSGGNL Trigger: GAGATTGCCACCACTGCACCAGTGTGAACAACCTAG...TTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAAGTGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021667.7 ENSMUST00000222022.2 ENSMUST00000222982.2 |
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| 3UTR-3UTR TCA 90 bp | AGACACTTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAACATTGTGTCAGACTTTaGCAGAGAAGGATGACCCAC | + |
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Preference number: 2 (lower is better) Translates to: RHFWIKLNKMRAGHDEKEHCVRL*QRRMTH Trigger: GTGGGTCATCCTTCTCTGTCAAAGTCTGACACAATG...TTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAAGTGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222022.2 |
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| 3UTR-3UTR CCA 90 bp | AGACACTTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAAGGGTTATTCAACACTTaGAATGAGCTTCGGATCAGT | + |
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Preference number: 2 (lower is better) Translates to: RHFWIKLNKMRAGHDEKEGLFNT*NELRIS Trigger: ACTGATCCGAAGCTCATTCCAAGTGTTGAATAACCC...TTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAAGTGTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222022.2 |
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| 3UTR-3UTR CAA 90 bp | AGACACTTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAAGATGTGGCCTTGACATaGTACTGGGGGAGGGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: RHFWIKLNKMRAGHDEKEDVALT*YWGRGE Trigger: CTCTCCCCTCCCCCAGTACAATGTCAAGGCCACATC...TTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAAGTGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR TCA 90 bp | ACAGGTGAGGTAACAGCCTTTGGATGTGGCCTTGACATTGTACTGGGGGAGGGGGGACGCAGCTGTCTGTaGGGCGGATCTGTCCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: TGEVTAFGCGLDIVLGEGGRSCL*GGSVPR Trigger: GCGAGGGACAGATCCGCCTCACAGACAGCTGCGTCC...CCCCTCCCCCAGTACAATGTCAAGGCCACATCCAAAGGCTGTTACCTCACCTGT 60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR TCA 90 bp | CCTTTGGATGTGGCCTTGACATTGTACTGGGGGAGGGGAGAGTATTTCGGCCAACCTCTACTTGCAGCCTaGGGAATTCTGACCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: PLDVALTLYWGRGEYFGQPLLAA*GILTLR Trigger: CCGAAGGGTCAGAATTCCTCAGGCTGCAAGTAGAGG...TTGGCCGAAATACTCTCCCCTCCCCCAGTACAATGTCAAGGCCACATCCAAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGATGTGGCCTTGACATTGTACTGGGGGAGGGGAGAGTATTTCGGCCAAATTTCCAGAAGCCTCTaGACGCAGCTGTCTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PLDVALTLYWGRGEYFGQISRSL*TQLSVR Trigger: CCTCACAGACAGCTGCGTCCAGAGGCTTCTGGAAAT...TTGGCCGAAATACTCTCCCCTCCCCCAGTACAATGTCAAGGCCACATCCAAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR TCA 90 bp | AGGGGAGAGTATTTCGGCCAAGAGTTAAAAGCTTCACATTCCATAATTTACAGTGGACGCAGCTGTCTGTaGGGCGGATCTGTCCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: RGEYFGQELKASHSIIYSGRSCL*GGSVPR Trigger: GCGAGGGACAGATCCGCCTCACAGACAGCTGCGTCC...ACTGTAAATTATGGAATGTGAAGCTTTTAACTCTTGGCCGAAATACTCTCCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR TCA 90 bp | AGACACTTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAAGGACGCAGCTGTCTGTaGGGCGGATCTGTCCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: RHFWIKLNKMRAGHDEKEGRSCL*GGSVPR Trigger: GCGAGGGACAGATCCGCCTCACAGACAGCTGCGTCC...TTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAAGTGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021667.7 ENSMUST00000222022.2 ENSMUST00000222982.2 |
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| CDS-3UTR TCA 90 bp | AGAGGTGCTACAAATTATACTGGGTTCCAACCAGTGATTACAGGTGAGGTAACACCTCTACTTGCAGCCTaGGGAATTCTGACCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: RGATNYTGFQPVITGEVTPLLAA*GILTLR Trigger: CCGAAGGGTCAGAATTCCTCAGGCTGCAAGTAGAGG...TGTTACCTCACCTGTAATCACTGGTTGGAACCCAGTATAATTTGTAGCACCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR TCA 90 bp | AGAGGTGCTACAAATTATACTGGGTTCCAACCAGTGATTACAGGTGAGGTAACACAGCCTTGCTGGGCTTaGGGGTTATTCAACACTTGG | + |
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Preference number: 4 (lower is better) Translates to: RGATNYTGFQPVITGEVTQPCWA*GLFNTW Trigger: CCAAGTGTTGAATAACCCTCAAGCCCAGCAAGGCTG...TGTTACCTCACCTGTAATCACTGGTTGGAACCCAGTATAATTTGTAGCACCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR CCA 90 bp | AGAGGTGCTACAAATTATACTGGGTTCCAACCAGTGATTACAGGTGAGGTAACACGCCAGCCTCTGGAATaGAAGATGTTGTTTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RGATNYTGFQPVITGEVTRQPLE*KMLFPS Trigger: GCTGGGAAACAACATCTTCCATTCCAGAGGCTGGCG...TGTTACCTCACCTGTAATCACTGGTTGGAACCCAGTATAATTTGTAGCACCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR CCA 90 bp | ATTACAGGTGAGGTAACAGCCTTTGGATGTGGCCTTGACATTGTACTGGGGGAGGGGTTATTCAACACTTaGAATGAGCTTCGGATCAGT | + |
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Preference number: 4 (lower is better) Translates to: ITGEVTAFGCGLDIVLGEGLFNT*NELRIS Trigger: ACTGATCCGAAGCTCATTCCAAGTGTTGAATAACCC...CTCCCCCAGTACAATGTCAAGGCCACATCCAAAGGCTGTTACCTCACCTGTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021667.7 ENSMUST00000222982.2 |
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| CDS-3UTR CCA 90 bp | AGGTTAACTCCAAATTTTGGAGTCCTAGAGGTGCTACAAATTATACTGGGTTCCCGCCAGCCTCTGGAATaGAAGATGTTGTTTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RLTPNFGVLEVLQIILGSRQPLE*KMLFPS Trigger: GCTGGGAAACAACATCTTCCATTCCAGAGGCTGGCG...GGAACCCAGTATAATTTGTAGCACCTCTAGGACTCCAAAATTTGGAGTTAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021667.7 |
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| CDS-3UTR TCA 90 bp | AAATTTTGGAGTCCTAGAGGTGCTACAAATTATACTGGGTTCCAACCAGTGATTCAGCCTTGCTGGGCTTaGGGGTTATTCAACACTTGG | + |
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Preference number: 4 (lower is better) Translates to: KFWSPRGATNYTGFQPVIQPCWA*GLFNTW Trigger: CCAAGTGTTGAATAACCCTCAAGCCCAGCAAGGCTG...AATCACTGGTTGGAACCCAGTATAATTTGTAGCACCTCTAGGACTCCAAAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021667.7 |
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| CDS-3UTR CCA 90 bp | GCTAGAGAGGTTAACTCCAAATTTTGGAGTCCTAGAGGTGCTACAAATTATACTATTTCCAGAAGCCTCTaGACGCAGCTGTCTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: AREVNSKFWSPRGATNYTISRSL*TQLSVR Trigger: CCTCACAGACAGCTGCGTCCAGAGGCTTCTGGAAAT...AGTATAATTTGTAGCACCTCTAGGACTCCAAAATTTGGAGTTAACCTCTCTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021667.7 |
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| CDS-3UTR CCA 90 bp | TTCTGGATTAAATTAAATAAGATGAGAGCCGGACATGATGAGAAAGAAACCTCTCGCCAGCCTCTGGAATaGAAGATGTTGTTTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FWIKLNKMRAGHDEKETSRQPLE*KMLFPS Trigger: GCTGGGAAACAACATCTTCCATTCCAGAGGCTGGCG...AGAGGTTTCTTTCTCATCATGTCCGGCTCTCATCTTATTTAATTTAATCCAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021667.7 ENSMUST00000222022.2 ENSMUST00000222982.2 |
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