Pregenerated sensors for ISCA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044792Ensembl transcript IDs: ENSMUST00000057115.7, ENSMUST00000225850.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCATCGCCACTCTCCTCACCGAATGTCTCAGACAGCACTGCTGTaGCCTCGAGGAAGGGAGAGCTGGGCAGGAACTGAGCAAGCAAGC | + |
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Preference number: 1 (lower is better) Translates to: SHRHSPHRMSQTALL*PRGRESWAGTEQAS Trigger: GCTTGCTTGCTCAGTTCCTGCCCAGCTCTCCCTTCCTCGAGGTCACAGCAGTGCTGTCTGAGACATTCGGTGAGGAGAGTGGCGATGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR TCA 90 bp | GCAGACCCGGCTCACCTGGAGCTCACAGTCCTGAGGTTTCACACGTaGAAGCTCTCACCGCAGCCACAGGTTCCCTTGATGTTGGGGTTA | + |
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Preference number: 1 (lower is better) Translates to: ADPAHLELTVLRFHT*KLSPQPQVPLMLGL Trigger: TAACCCCAACATCAAGGGAACCTGTGGCTGCGGTGAGAGCTTTCACGTGTGAAACCTCAGGACTGTGAGCTCCAGGTGAGCCGGGTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225850.2 |
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| 3UTR TCA 90 bp | GGAAAAACTTGGGATCCAGGCATGGTAGCACATGCCTCAGAAGGTTaGAGCAGGAGGATTGTGCGTTCAAGGCTGGCCTGTAGTATACAG | + |
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Preference number: 1 (lower is better) Translates to: GKTWDPGMVAHASEG*SRRIVRSRLACSIQ Trigger: CTGTATACTACAGGCCAGCCTTGAACGCACAATCCTCCTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAAGTTTTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CCA 90 bp | AAATATTTAGCAATTTCGTTTAGGAACCAGAAAGCATATGCATACTaGCAAGTGTCAGAATGGCATGTTCCGCTCCACAGGCCCGGTGCT | + |
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Preference number: 1 (lower is better) Translates to: KYLAISFRNQKAYAY*QVSEWHVPLHRPGA Trigger: AGCACCGGGCCTGTGGAGCGGAACATGCCATTCTGACACTTGCCAGTATGCATATGCTTTCTGGTTCCTAAACGAAATTGCTAAATATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAACTTGGGATCCAGGCATGGTAGCACATGCCTCAGAAGGTTGAAGCAGGAGCGAGGAAGGGAGAGCTaGGCAGGAACTGAGCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: KNLGSRHGSTCLRRLKQERGRES*AGTEQA Trigger: TGCTTGCTCAGTTCCTGCCCAGCTCTCCCTTCCTCG...CTCCTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAAGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCACTGCTGTGACCTCGAGGAAGGGAGAGCTGGGCAGGAACTGAGCAAGCAAGGCTTGGTTTTCAAATaGGTCACTTTATTTTCACCC | + |
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Preference number: 2 (lower is better) Translates to: QHCCDLEEGRAGQELSKQGLVFK*VTLFSP Trigger: GGGTGAAAATAAAGTGACGCATTTGAAAACCAAGCC...TTGCTTGCTCAGTTCCTGCCCAGCTCTCCCTTCCTCGAGGTCACAGCAGTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAGAGCTGGGCAGGAACTaGGCAAGCAAGCTGGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: LHETQPSTKEFTGYLRCPELGRN*ASKLAA Trigger: AGCAGCCAGCTTGCTTGCTCAGTTCCTGCCCAGCTC...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGATGTAGGTCACGCCTGTTATCCCATTCCTCAATTCCCAGCAAAGCAATGGTGGAGCTCACAGTCCTaGGGTTTCACACGTGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: CDVGHACYPIPQFPAKQWWSSQS*GFTRES Trigger: GCTTTCACGTGTGAAACCTCAGGACTGTGAGCTCCA...CCATTGCTTTGCTGGGAATTGAGGAATGGGATAACAGGCGTGACCTACATCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225850.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTCACACGTGAAAGCTCTCACCGCAGCCACAGGTTCCCTTGATGTTGGGGTTAGAGAGTACAGACATTaGTTTTGGAACTCTTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: VSHVKALTAATGSLDVGVREYRH*FWNSSH Trigger: GTGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCT...AACCCCAACATCAAGGGAACCTGTGGCTGCGGTGAGAGCTTTCACGTGTGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAACTTGGGATCCAGGCATGGTAGCACATGCCTCAGAAGGTTGAAGCAGGAGTCTAAACGAACAAGATaGCAACTCACACGAAAGGGT | + |
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Preference number: 2 (lower is better) Translates to: KNLGSRHGSTCLRRLKQESKRTR*QLTRKG Trigger: ACCCTTTCGTGTGAGTTGCCATCTTGTTCGTTTAGA...CTCCTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAAGTTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CAA 90 bp | TTAAGATGTCCAACCCAAGTCAATCAAGACCACTTAAGGAAAAACTaGGGATCCAGGCATGGTAGCACATGCCTCAGAAGGTTGAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LRCPTQVNQDHLRKN*GSRHGSTCLRRLKQ Trigger: CTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAAGTTTTTCCTTAAGTGGTCTTGATTGACTTGGGTTGGACATCTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGATGTAGGTCACGCCTGTTATCCCATTCCTCAATTCCCAGCAAAGCAATGGGAACTCTTCCCACATTaGCTTGGTTTTCAAATGCGT | + |
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Preference number: 2 (lower is better) Translates to: CDVGHACYPIPQFPAKQWELFPH*LGFQMR Trigger: ACGCATTTGAAAACCAAGCCAATGTGGGAAGAGTTC...CCATTGCTTTGCTGGGAATTGAGGAATGGGATAACAGGCGTGACCTACATCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAAGCAAGCAAGCTGGCTaGTTAGCACAAGCGTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: LHETQPSTKEFTGYLRCPSKQAG*LAQAFL Trigger: TAGAAACGCTTGTGCTAAGCAGCCAGCTTGCTTGCT...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | AAGATGGCAACTCACACGAAAGGGTTTACACAAGAGTCTAGTCAAAAGAAAACTTGGCAAGTGTCAGAATaGCATGTTCCGCTCCACAGG | + |
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Preference number: 2 (lower is better) Translates to: KMATHTKGFTQESSQKKTWQVSE*HVPLHR Trigger: CCTGTGGAGCGGAACATGCCATTCTGACACTTGCCA...AGTTTTCTTTTGACTAGACTCTTGTGTAAACCCTTTCGTGTGAGTTGCCATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAACCCAAGTCAATCAGGGGTTGGCAAAGATTaGGAAAGGGATAGACACACT | + |
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Preference number: 2 (lower is better) Translates to: AFHKRIHRLLKMSNPSQSGVGKD*ERDRHT Trigger: AGTGTGTCTATCCCTTTCTCAATCTTTGCCAACCCC...TGATTGACTTGGGTTGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR GCA 90 bp | CGAACAAGATGGCAACTCACACGAAAGGGTTTACACAAGAGTCTAGTCAAAAGAAGAGAGTACAGACATTaGTTTTGGAACTCTTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: RTRWQLTRKGLHKSLVKRREYRH*FWNSSH Trigger: GTGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCT...TCTTTTGACTAGACTCTTGTGTAAACCCTTTCGTGTGAGTTGCCATCTTGTTCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAGAACCAGAAAGCATATaGATACTGGCAAGTGTCAGA | + |
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Preference number: 2 (lower is better) Translates to: LHETQPSTKEFTGYLRCPEPESI*ILASVR Trigger: TCTGACACTTGCCAGTATGCATATGCTTTCTGGTTC...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAGAACTCTTCCCACATTaGCTTGGTTTTCAAATGCGT | + |
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Preference number: 2 (lower is better) Translates to: LHETQPSTKEFTGYLRCPELFPH*LGFQMR Trigger: ACGCATTTGAAAACCAAGCCAATGTGGGAAGAGTTC...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CAA 90 bp | TCCTGTAGAGAACAGAATGACTCAAGGAAATCTACGGCTTCTCAGTaGTGTCTTAGTATAGACGCCATGTTTTCTCAGTTTGTGTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: SCREQNDSRKSTASQ*CLSIDAMFSQFVSL Trigger: CAAAGACACAAACTGAGAAAACATGGCGTCTATACTAAGACACAACTGAGAAGCCGTAGATTTCCTTGAGTCATTCTGTTCTCTACAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR GCA 90 bp | CGAACAAGATGGCAACTCACACGAAAGGGTTTACACAAGAGTCTAGTCAAAAGAGGCTTGGTTTTCAAATaGGTCACTTTATTTTCACCC | + |
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Preference number: 2 (lower is better) Translates to: RTRWQLTRKGLHKSLVKRGLVFK*VTLFSP Trigger: GGGTGAAAATAAAGTGACGCATTTGAAAACCAAGCC...TCTTTTGACTAGACTCTTGTGTAAACCCTTTCGTGTGAGTTGCCATCTTGTTCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CAA 90 bp | CATGTTTTCTCAGTTTGTGTCTTACAGAGAGTACAGACATTGCTTTaGGAACTCTTCCCACATTGGCTTGGTTTTCAAATGCGTCACTTT | + |
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Preference number: 2 (lower is better) Translates to: HVFSVCVLQRVQTLL*ELFPHWLGFQMRHF Trigger: AAAGTGACGCATTTGAAAACCAAGCCAATGTGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCTGTAAGACACAAACTGAGAAAACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | CATGTTTTCTCAGTTTGTGTCTTACAGAGAGTACAGACATTGCTTTTGGAACTCTACAGACATTGCTTTTaGAACTCTTCCCACATTGGC | + |
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Preference number: 2 (lower is better) Translates to: HVFSVCVLQRVQTLLLELYRHCF*NSSHIG Trigger: GCCAATGTGGGAAGAGTTCCAAAAGCAATGTCTGTA...GAGTTCCAAAAGCAATGTCTGTACTCTCTGTAAGACACAAACTGAGAAAACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | CAGACTCATCAACATTCATATAAAACTACGAGTTGGTATATTTTGGTGGTAGGTTACAGACATTGCTTTTaGAACTCTTCCCACATTGGC | + |
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Preference number: 2 (lower is better) Translates to: QTHQHSYKTTSWYILVVGYRHCF*NSSHIG Trigger: GCCAATGTGGGAAGAGTTCCAAAAGCAATGTCTGTA...ACCTACCACCAAAATATACCAACTCGTAGTTTTATATGAATGTTGATGAGTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CCA 90 bp | CAGACTCATCAACATTCATATAAAACTACGAGTTGGTATATTTTGGTGGTAGGTTCTAAACGAACAAGATaGCAACTCACACGAAAGGGT | + |
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Preference number: 2 (lower is better) Translates to: QTHQHSYKTTSWYILVVGSKRTR*QLTRKG Trigger: ACCCTTTCGTGTGAGTTGCCATCTTGTTCGTTTAGA...ACCTACCACCAAAATATACCAACTCGTAGTTTTATATGAATGTTGATGAGTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR TCA 72 bp | CCGAGGCAGACCCGGCTCACCTGGAGCTCACAGTCCTaGGGTTTCACACGTGAAAGCTCTCACCGCAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: PRQTRLTWSSQS*GFTRESSHRSH Trigger: GTGGCTGCGGTGAGAGCTTTCACGTGTGAAACCTCAGGACTGTGAGCTCCAGGTGAGCCGGGTCTGCCTCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225850.2 |
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| 3UTR TCA 72 bp | GCTCACCTGGAGCTCACAGTCCTGAGGTTTCACACGTaGAAGCTCTCACCGCAGCCACAGGTTCCCTTGATG | + |
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Preference number: 3 (lower is better) Translates to: AHLELTVLRFHT*KLSPQPQVPLM Trigger: CATCAAGGGAACCTGTGGCTGCGGTGAGAGCTTTCACGTGTGAAACCTCAGGACTGTGAGCTCCAGGTGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225850.2 |
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| 3UTR TCA 72 bp | TGGGATCCAGGCATGGTAGCACATGCCTCAGAAGGTTaGAGCAGGAGGATTGTGCGTTCAAGGCTGGCCTGT | + |
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Preference number: 3 (lower is better) Translates to: WDPGMVAHASEG*SRRIVRSRLAC Trigger: ACAGGCCAGCCTTGAACGCACAATCCTCCTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CCA 72 bp | AACCAGAAAGCATATGCATACTGGCAAGTGTCAGAATaGCATGTTCCGCTCCACAGGCCCGGTGCTGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: NQKAYAYWQVSE*HVPLHRPGAER Trigger: CCTCTCAGCACCGGGCCTGTGGAGCGGAACATGCCATTCTGACACTTGCCAGTATGCATATGCTTTCTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR GCA 72 bp | GGGAGAGCTGGGCAGGAACTGAGCAAGCAAGCTGGCTaGTTAGCACAAGCGTTTCTAACTGAAAGGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: GRAGQELSKQAG*LAQAFLTERST Trigger: TGTAGACCTTTCAGTTAGAAACGCTTGTGCTAAGCAGCCAGCTTGCTTGCTCAGTTCCTGCCCAGCTCTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGGCAGGAACTGAGCAAGCAAGCTGGCTGCTTAGCACAAGCGTTTCTAACTCTTCCCACATTGGCTaGGTTTTCAAATGCGTCACT | + |
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Preference number: 3 (lower is better) Translates to: SWAGTEQASWLLSTSVSNSSHIG*VFKCVT Trigger: AGTGACGCATTTGAAAACCAAGCCAATGTGGGAAGA...GTTAGAAACGCTTGTGCTAAGCAGCCAGCTTGCTTGCTCAGTTCCTGCCCAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR GCA 72 bp | TTAAGGAAAAACTTGGGATCCAGGCATGGTAGCACATaGCTCAGAAGGTTGAAGCAGGAGGATTGTGCGTTC | + |
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Preference number: 3 (lower is better) Translates to: LRKNLGSRHGST*LRRLKQEDCAF Trigger: GAACGCACAATCCTCCTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAAGTTTTTCCTTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGGCAGGGTAGGAGTTTCCTGTAGAGAACAGAATGACTCAAGGAAATCTACGGGAACTCTTCCCACATaGGCTTGGTTTTCAAATGCG | + |
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Preference number: 3 (lower is better) Translates to: KGRVGVSCREQNDSRKSTGTLPT*AWFSNA Trigger: CGCATTTGAAAACCAAGCCAATGTGGGAAGAGTTCC...CGTAGATTTCCTTGAGTCATTCTGTTCTCTACAGGAAACTCCTACCCTGCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAACATGCCTCAGAAGGTaGAAGCAGGAGGATTGTGCG | + |
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Preference number: 3 (lower is better) Translates to: LHETQPSTKEFTGYLRCPTCLRR*KQEDCA Trigger: CGCACAATCCTCCTGCTTCAACCTTCTGAGGCATGT...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CCA 72 bp | GCAATTTCGTTTAGGAACCAGAAAGCATATGCATACTaGCAAGTGTCAGAATGGCATGTTCCGCTCCACAGG | + |
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Preference number: 3 (lower is better) Translates to: AISFRNQKAYAY*QVSEWHVPLHR Trigger: CCTGTGGAGCGGAACATGCCATTCTGACACTTGCCAGTATGCATATGCTTTCTGGTTCCTAAACGAAATTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCAGGAACTCTTCCCACATaGGCTTGGTTTTCAAATGCG | + |
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Preference number: 3 (lower is better) Translates to: LHETQPSTKEFTGYLRCPGTLPT*AWFSNA Trigger: CGCATTTGAAAACCAAGCCAATGTGGGAAGAGTTCC...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCATGAGACTCAGCCTTCCACAAAAGAATTCACAGGTTACTTAAGATGTCCACAGAGAGTACAGACATaGCTTTTGGAACTCTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: LHETQPSTKEFTGYLRCPQRVQT*LLELFP Trigger: TGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCTG...TGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAGGCTGAGTCTCATGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CCA 72 bp | ATACTGGAACTCAGAACTCAGGAACTGTTGAAGGGTTaGCAAACGAGGCATGTGATCATCACATTTTTGGTA | + |
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Preference number: 3 (lower is better) Translates to: ILELRTQELLKG*QTRHVIITFLV Trigger: TACCAAAAATGTGATGATCACATGCCTCGTTTGCCAACCCTTCAACAGTTCCTGAGTTCTGAGTTCCAGTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | TGTGATCATCACATTTTTGGTAAAAATGTAATGGGCCATGCCAAAGGTGAGGGAGTACAGACATTGCTTTaGGAACTCTTCCCACATTGG | + |
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Preference number: 3 (lower is better) Translates to: CDHHIFGKNVMGHAKGEGVQTLL*ELFPHW Trigger: CCAATGTGGGAAGAGTTCCAAAAGCAATGTCTGTAC...TCCCTCACCTTTGGCATGGCCCATTACATTTTTACCAAAAATGTGATGATCACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGTCAATCAAGACCACTTAAGGAAAAACTTGGGATCCAGGCATGGTAGCACACCATGTTTTCTCAGTTaGTGTCTTACAGAGAGTACA | + |
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Preference number: 3 (lower is better) Translates to: QVNQDHLRKNLGSRHGSTPCFLS*CLTEST Trigger: TGTACTCTCTGTAAGACACAAACTGAGAAAACATGG...TGTGCTACCATGCCTGGATCCCAAGTTTTTCCTTAAGTGGTCTTGATTGACTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CCA 72 bp | CAGTTTGTGTCTTACAGAGAGTACAGACATTGCTTTTaGAACTCTTCCCACATTGGCTTGGTTTTCAAATGC | + |
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Preference number: 3 (lower is better) Translates to: QFVSYREYRHCF*NSSHIGLVFKC Trigger: GCATTTGAAAACCAAGCCAATGTGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCTGTAAGACACAAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | TTACTTAAGATGTCCAACCCAAGTCAATCAAGACCACTTAAGGAAAAACTTGGGTCTTCCCACATTGGCTaGGTTTTCAAATGCGTCACT | + |
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Preference number: 3 (lower is better) Translates to: LLKMSNPSQSRPLKEKLGSSHIG*VFKCVT Trigger: AGTGACGCATTTGAAAACCAAGCCAATGTGGGAAGA...CCCAAGTTTTTCCTTAAGTGGTCTTGATTGACTTGGGTTGGACATCTTAAGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTTTCTCAGTTTGTGTCTTACAGAGAGTACAGACATTGCTTTTGGAACTCTTCAGAGAGTACAGACATaGCTTTTGGAACTCTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: CFLSLCLTESTDIAFGTLQRVQT*LLELFP Trigger: TGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCTG...AAGAGTTCCAAAAGCAATGTCTGTACTCTCTGTAAGACACAAACTGAGAAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR-3UTR CAA 90 bp | TTACTTAAGATGTCCAACCCAAGTCAATCAAGACCACTTAAGGAAAAACTTGGGCCATGTTTTCTCAGTTaGTGTCTTACAGAGAGTACA | + |
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Preference number: 3 (lower is better) Translates to: LLKMSNPSQSRPLKEKLGPCFLS*CLTEST Trigger: TGTACTCTCTGTAAGACACAAACTGAGAAAACATGG...CCCAAGTTTTTCCTTAAGTGGTCTTGATTGACTTGGGTTGGACATCTTAAGTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| CDS-3UTR TCA 90 bp | AAGGGCAGGGTAGGAGTTTCCTGTAGAGAACAGAATGACTCAAGGAAATCTACGCAGAGGGGGTCAGTGTaGGGGCCGCCCGCGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: KGRVGVSCREQNDSRKSTQRGSV*GPPAWA Trigger: AGCCCACGCGGGCGGCCCTCACACTGACCCCCTCTG...CGTAGATTTCCTTGAGTCATTCTGTTCTCTACAGGAAACTCCTACCCTGCCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| CDS-3UTR TCA 90 bp | TGTCTTACAGAGAGTACAGACATTGCTTTTGGAACTCTTCCCACATTGGCTTGGCAGAGGGGGTCAGTGTaGGGGCCGCCCGCGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CLTESTDIAFGTLPTLAWQRGSV*GPPAWA Trigger: AGCCCACGCGGGCGGCCCTCACACTGACCCCCTCTG...CCAAGCCAATGTGGGAAGAGTTCCAAAAGCAATGTCTGTACTCTCTGTAAGACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CAA 72 bp | TTGGGATCCAGGCATGGTAGCACATGCCTCAGAAGGTaGAAGCAGGAGGATTGTGCGTTCAAGGCTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LGSRHGSTCLRR*KQEDCAFKAGL Trigger: CAGGCCAGCCTTGAACGCACAATCCTCCTGCTTCAACCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CAA 72 bp | CCAACCCAAGTCAATCAAGACCACTTAAGGAAAAACTaGGGATCCAGGCATGGTAGCACATGCCTCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: PTQVNQDHLRKN*GSRHGSTCLRR Trigger: CCTTCTGAGGCATGTGCTACCATGCCTGGATCCCAAGTTTTTCCTTAAGTGGTCTTGATTGACTTGGGTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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| 3UTR CAA 72 bp | GAACAGAATGACTCAAGGAAATCTACGGCTTCTCAGTaGTGTCTTAGTATAGACGCCATGTTTTCTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: EQNDSRKSTASQ*CLSIDAMFSQF Trigger: AAACTGAGAAAACATGGCGTCTATACTAAGACACAACTGAGAAGCCGTAGATTTCCTTGAGTCATTCTGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057115.7 ENSMUST00000225850.2 |
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