Pregenerated sensors for IRX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001504Ensembl transcript IDs: ENSMUST00000074372.6, ENSMUST00000167067.2, ENSMUST00000172353.3
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTGGCAGTaGAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGG | + |
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Preference number: 1 (lower is better) Translates to: AQTTCVQSLESVGWQ*SVHPLIQWHKMWSG Trigger: CCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR CCA 90 bp | TTAGAGTCTGTGGGTTGGCAGTGCAGTGTGCATCCTCTTATACAGTaGCACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTTGTATCT | + |
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Preference number: 1 (lower is better) Translates to: LESVGWQCSVHPLIQ*HKMWSGFPHLGFVS Trigger: AGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGCCAACCCACAGACTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR CCA 90 bp | TCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTaGCAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGG | + |
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Preference number: 1 (lower is better) Translates to: SYAQTTCVQSLESVG*QCSVHPLIQWHKMW Trigger: CCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR TCA 90 bp | ACAGATTGTTTCCAAAAGTCACACAAACATAGGGAAGCTATACTATaGCAACAAGTTCTCATATGCCCAAACAACGTGTGTCCAGTCCTT | + |
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Preference number: 1 (lower is better) Translates to: TDCFQKSHKHREAIL*QQVLICPNNVCPVL Trigger: AAGGACTGGACACACGTTGTTTGGGCATATGAGAACTTGTTGTCATAGTATAGCTTCCCTATGTTTGTGTGACTTTTGGAAACAATCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR-3UTR TCA 90 bp | GGTAGGACCACCTTTGGGGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAATATATACCGTGGCAATaGAGTGATGAGGATATCCTG | + |
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Preference number: 2 (lower is better) Translates to: GRTTFGAGTRATAGASTQYIPWQ*SDEDIL Trigger: CAGGATATCCTCATCACTTCATTGCCACGGTATATA...TTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCCCCAAAGGTGGTCCTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| 3UTR-3UTR TCA 90 bp | GGTAGGACCACCTTTGGGGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAAGGGAAGCTATACTATaGCAACAAGTTCTCATATGC | + |
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Preference number: 2 (lower is better) Translates to: GRTTFGAGTRATAGASTQREAIL*QQVLIC Trigger: GCATATGAGAACTTGTTGTCATAGTATAGCTTCCCT...TTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCCCCAAAGGTGGTCCTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| 3UTR-3UTR CCA 90 bp | CTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTGGCAGTGCAGTGGCACAAAATGTaGTCCGGGTTTCCACATCTG | + |
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Preference number: 2 (lower is better) Translates to: LICPNNVCPVLRVCGLAVQWHKM*SGFPHL Trigger: CAGATGTGGAAACCCGGACCACATTTTGTGCCACTG...CACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR CAA 90 bp | CTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTaGGCAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTG | + |
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Preference number: 2 (lower is better) Translates to: LICPNNVCPVLRVCG*AVQCASSYTVAQNV Trigger: CACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGAAGGACTCAAGTTCTTCAATCACGTTAGTTCTACCGTGTACATTTTTCCGGGTTTCCACATCTaGGGTTTGTATCTGTGTATT | + |
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Preference number: 2 (lower is better) Translates to: TSEGLKFFNHVSSTVYIFPGFHI*GLYLCI Trigger: AATACACAGATACAAACCCCAGATGTGGAAACCCGG...AAAAATGTACACGGTAGAACTAACGTGATTGAAGAACTTGAGTCCTTCAGAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR-3UTR CCA 90 bp | TCAAATTTGTTTCCACTTCTGAAGGACTCAAGTTCTTCAATCACGTTAGTTCTACCGGGTTTCCACATCTaGGGTTTGTATCTGTGTATT | + |
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Preference number: 2 (lower is better) Translates to: SNLFPLLKDSSSSITLVLPGFHI*GLYLCI Trigger: AATACACAGATACAAACCCCAGATGTGGAAACCCGG...TAGAACTAACGTGATTGAAGAACTTGAGTCCTTCAGAAGTGGAAACAAATTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR CCA 72 bp | CAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAATaGGTCTCCAGTAAAAATGAGCCCCAAACACCATTT | + |
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Preference number: 3 (lower is better) Translates to: QEPGLPLELLPK*VSSKNEPQTPF Trigger: AAATGGTGTTTGGGGCTCATTTTTACTGGAGACCCATTTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| 3UTR TCA 72 bp | AAGGACGTTTATTTCACTGGCTCTTCACTTAAAAGGTaGGGTAGGACCACCTTTGGGGCAGGAACCAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: KDVYFTGSSLKR*GRTTFGAGTRA Trigger: AGCCCTGGTTCCTGCCCCAAAGGTGGTCCTACCTCACCTTTTAAGTGAAGAGCCAGTGAAATAAACGTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| 3UTR CCA 72 bp | TGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTaGTCCGGGTTTCCACATCTGGGGTTTGTATCTGTG | + |
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Preference number: 3 (lower is better) Translates to: CSVHPLIQWHKM*SGFPHLGFVSV Trigger: CACAGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR-3UTR CAA 90 bp | CAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTTGTGTATTTATGAACTaGGGAAGGGAGAATAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: QCASSYTVAQNVVRVSTSCVFMN*GRENSL Trigger: GAGGCTATTCTCCCTTCCCAAGTTCATAAATACACA...AGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR TCA 72 bp | TTCCAAAAGTCACACAAACATAGGGAAGCTATACTATaGCAACAAGTTCTCATATGCCCAAACAACGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: FQKSHKHREAIL*QQVLICPNNVC Trigger: ACACACGTTGTTTGGGCATATGAGAACTTGTTGTCATAGTATAGCTTCCCTATGTTTGTGTGACTTTTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| 3UTR GCA 72 bp | GGTATCTCCCTGTTGTACATTAATTTCTCTCAGGTCTaGAGTTTTTCAAATAAGCTCAAGAAGGACGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: GISLLYINFSQV*SFSNKLKKDVY Trigger: ATAAACGTCCTTCTTGAGCTTATTTGAAAAACTGCAGACCTGAGAGAAATTAATGTACAACAGGGAGATACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | GGTAGGACCACCTTTGGGGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAAGTACTGCAGCGGGCTaGCGAAGCCGGTTGCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: GRTTFGAGTRATAGASTQSTAAG*RSRLPP Trigger: AGGCGGCAACCGGCTTCGGCAGCCCGCTGCAGTACT...TTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCCCCAAAGGTGGTCCTACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | GGTAGGACCACCTTTGGGGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAAGGAGGTTACGGGCTTaGGTGGCGCCAGGTCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: GRTTFGAGTRATAGASTQRRLRA*VAPGPA Trigger: AGCGGGACCTGGCGCCACCCAAGCCCGTAACCTCCT...TTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCCCCAAAGGTGGTCCTACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR TCA 90 bp | GCAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCTTGCCGCCTGCGCTGTaGAGGCCGCCGAGCCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: AVQCASSYTVAQNVVRVSLPPAL*RPPSRG Trigger: ACCCCGGCTCGGCGGCCTTCACAGCGCAGGCGGCAA...GGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | GCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTGGTTACGGGCTTGGGTaGCGCCAGGTCCCGCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: ASSYTVAQNVVRVSTSGVGYGLG*RQVPLA Trigger: TGCGAGCGGGACCTGGCGCCACCCAAGCCCGTAACC...AACCCCAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | GGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAATGGGTCTCCAGTAAAATACCGCAGAAGGCCCTaGCCTTGCAGCGCTGCGTTT | + |
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Preference number: 4 (lower is better) Translates to: GRNQGYRWSFYPNGSPVKYRRRP*PCSAAF Trigger: AAACGCAGCGCTGCAAGGCCAGGGCCTTCTGCGGTA...TTTTACTGGAGACCCATTTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | TGGGTTGGCAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGTGGCCGCCTTGGGCATaGCGTGCAGTGTCTCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: WVGSAVCILLYSGTKCGPWPPWA*RAVSRL Trigger: CAGGCGAGACACTGCACGCCATGCCCAAGGCGGCCA...CGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGCCAACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | GTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGGCCTTGCCCGTGTCGCTaGCCGCCTTGGGCATGGCGT | + |
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Preference number: 4 (lower is better) Translates to: VCILLYSGTKCGPGFHIWPCPCR*PPWAWR Trigger: ACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGG...CCAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR TCA 90 bp | GCAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCGGTACGCGGGGTCGTTaGGCTGGTATGGATAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: AVQCASSYTVAQNVVRVSGTRGR*AGMDRP Trigger: CGGCCTATCCATACCAGCTCAACGACCCCGCGTACC...GGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | CAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTAAGCCGGTTGCCGCCTaGGCTGTGAAGGCCGCCGAG | + |
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Preference number: 4 (lower is better) Translates to: QCASSYTVAQNVVRVSTSKPVAA*AVKAAE Trigger: CTCGGCGGCCTTCACAGCGCAGGCGGCAACCGGCTT...AGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | AGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGACCACAGCTTGGGTTTaGTGGCGGGCGGCGGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: SVHPLIQWHKMWSGFPHLTTAWV*WRAAAL Trigger: GAGCGCCGCCGCCCGCCAGCAAACCCAAGCTGTGGT...CAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR TCA 90 bp | GGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAATGGGTCTCCAGTAAAACCAAGCTTGGTTGCTTaGGGTCCGACGTGGCTATCT | + |
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Preference number: 4 (lower is better) Translates to: GRNQGYRWSFYPNGSPVKPSLVA*GPTWLS Trigger: AGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGG...TTTTACTGGAGACCCATTTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | CTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTGGCAGTGGGGCCCAAGCTTGGTTaGTTGAGGTCCGACGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LICPNNVCPVLRVCGLAVGPKLG*LRSDVA Trigger: AGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCC...CACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR TCA 90 bp | ACTTCTGAAGGACTCAAGTTCTTCAATCACGTTAGTTCTACCGTGTACATTTTTAGCCGGGGTACGGGCTaGACGCGGAGCCCGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: TSEGLKFFNHVSSTVYIFSRGTG*TRSPTP Trigger: CGGCGTCGGGCTCCGCGTTCAGCCCGTACCCCGGCT...AAAAATGTACACGGTAGAACTAACGTGATTGAAGAACTTGAGTCCTTCAGAAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | TTGGCAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTCCGCAGAGGTCTCTGTaGCATCCTGTGCCTTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LAVQCASSYTVAQNVVRVPQRSL*HPVPCL Trigger: CAGACAAGGCACAGGATGGCACAGAGACCTCTGCGG...AACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | CTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTGGCAGTGGCCTGCACCAACAACTaGACAGCCCTCACTGGTATC | + |
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Preference number: 4 (lower is better) Translates to: LICPNNVCPVLRVCGLAVACTNN*TALTGI Trigger: GATACCAGTGAGGGCTGTGCAGTTGTTGGTGCAGGC...CACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | AGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGGGCCGCACTGCCATATaGATGGTAGCTGATGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: SVHPLIQWHKMWSGFPHLGRTAI*MVADGA Trigger: GGCGCCATCAGCTACCATCCATATGGCAGTGCGGCC...CAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | ACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTTGTATCTGTGTATTTATGAAGCTGCCGAAGCCGGTTaGCGCCTGCGCTGTGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: TKCGPGFHIWGLYLCIYEAAEAG*RLRCEG Trigger: GCCTTCACAGCGCAGGCGGCAACCGGCTTCGGCAGC...TTCATAAATACACAGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | GGTCCGGGTTTCCACATCTGGGGTTTGTATCTGTGTATTTATGAACTTGGGAAGACCCGGGCCCAAGCTTaGTTGCTTGAGGTCCGACGT | + |
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Preference number: 4 (lower is better) Translates to: GPGFHIWGLYLCIYELGKTRAQA*LLEVRR Trigger: ACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGT...CTTCCCAAGTTCATAAATACACAGATACAAACCCCAGATGTGGAAACCCGGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR TCA 90 bp | GGAACCGTAGGTATCTCCCTGTTGTACATTAATTTCTCTCAGGTCTGCAGTTTTGTAGTGGGACTCCAGTaGATGCGAGCCCGCCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: GTVGISLLYINFSQVCSFVVGLQ*MRARLA Trigger: GGCAAGGCGGGCTCGCATTCACTGGAGTCCCACTAC...AAAACTGCAGACCTGAGAGAAATTAATGTACAACAGGGAGATACCTACGGTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| 3UTR CAA 72 bp | CCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTaGGCAGTGCAGTGTGCATCCTCTTATACAGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: PNNVCPVLRVCG*AVQCASSYTVA Trigger: TGCCACTGTATAAGAGGATGCACACTGCACTGCCAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| CDS-3UTR GCA 90 bp | CTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTTGTATCTAGAAGGCCCTGGCCTTaGAGCGCTGCGTTTAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LIQWHKMWSGFPHLGFVSRRPWP*SAAFKF Trigger: GAACTTAAACGCAGCGCTGCAAGGCCAGGGCCTTCT...AGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | CAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGTCGTTGAGCTGGTATaGATAGGCCGCACTGCCATA | + |
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Preference number: 4 (lower is better) Translates to: QCASSYTVAQNVVRVSTSVVELV*IGRTAI Trigger: TATGGCAGTGCGGCCTATCCATACCAGCTCAACGAC...AGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | TTGTTTCCACTTCTGAAGGACTCAAGTTCTTCAATCACGTTAGTTCTACCGTGTTCCGCTGAGCACGAGTaGTCCGTGAGCGAGTCGACG | + |
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Preference number: 4 (lower is better) Translates to: LFPLLKDSSSSITLVLPCSAEHE*SVSEST Trigger: CGTCGACTCGCTCACGGACCACTCGTGCTCAGCGGA...ACACGGTAGAACTAACGTGATTGAAGAACTTGAGTCCTTCAGAAGTGGAAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | CAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTCTGAACTCTCCTCCTTaGTTCTGGAAGCATCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: QCASSYTVAQNVVRVSTSLNSPP*FWKHLP Trigger: AGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAG...AGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR GCA 90 bp | TACATTAATTTCTCTCAGGTCTGCAGTTTTTCAAATAAGCTCAAGAAGGACGTTAATGCGAGCCCGCCTTaGCCGTGTCGCTGGCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: YINFSQVCSFSNKLKKDVNASPP*PCRWPP Trigger: AGGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATT...AACGTCCTTCTTGAGCTTATTTGAAAAACTGCAGACCTGAGAGAAATTAATGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | CAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACTCGCTTTTGTTCCTTaGGGCCCAGGTCATTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: QCSVHPLIQWHKMWSGFPLAFVP*GPGHFV Trigger: AACAAAATGACCTGGGCCCCAAGGAACAAAAGCGAG...TGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | TCAAATTTGTTTCCACTTCTGAAGGACTCAAGTTCTTCAATCACGTTAGTTCTACCAGCGACCACAGCTTaGGTTTGCTGGCGGGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: SNLFPLLKDSSSSITLVLPATTA*VCWRAA Trigger: CGCCGCCCGCCAGCAAACCCAAGCTGTGGTCGCTGG...TAGAACTAACGTGATTGAAGAACTTGAGTCCTTCAGAAGTGGAAACAAATTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | AAAAGTCACACAAACATAGGGAAGCTATACTATGACAACAAGTTCTCATATGCCTGTCGCTGGCCGCCTTaGGCATGGCGTGCAGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: KSHTNIGKLYYDNKFSYACRWPP*AWRAVS Trigger: AGACACTGCACGCCATGCCCAAGGCGGCCAGCGACA...GGCATATGAGAACTTGTTGTCATAGTATAGCTTCCCTATGTTTGTGTGACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | GGAACCGTAGGTATCTCCCTGTTGTACATTAATTTCTCTCAGGTCTGCAGTTTTTCTCCTCCTTGCTTCTaGAAGCATCTCCCTCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: GTVGISLLYINFSQVCSFSPPCF*KHLPRP Trigger: AGGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGA...AAAACTGCAGACCTGAGAGAAATTAATGTACAACAGGGAGATACCTACGGTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | ATTGTTTCCAAAAGTCACACAAACATAGGGAAGCTATACTATGACAACAAGTTCCACTGGTATCTTTCTTaGGCTCGTAGCCGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: IVSKSHTNIGKLYYDNKFHWYLS*ARSRRP Trigger: CGGGCGGCGGCTACGAGCCCAAGAAAGATACCAGTG...GAACTTGTTGTCATAGTATAGCTTCCCTATGTTTGTGTGACTTTTGGAAACAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| 3UTR CAA 72 bp | GGCACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTaGTATCTGTGTATTTATGAACTTGGGAAGGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: GTKCGPGFHIWG*YLCIYELGKGE Trigger: TTCTCCCTTCCCAAGTTCATAAATACACAGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000172353.3 |
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| CDS-3UTR GCA 90 bp | ACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTTGTATCTGTGTATTTATGAACGTAGTTTGTGTAGTTaGCATAGAAAGGGGACGTGT | + |
|
Preference number: 4 (lower is better) Translates to: TKCGPGFHIWGLYLCIYERSLCS*HRKGTC Trigger: ACACGTCCCCTTTCTATGGCAACTACACAAACTACG...TTCATAAATACACAGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CCA 90 bp | TACATTAATTTCTCTCAGGTCTGCAGTTTTTCAAATAAGCTCAAGAAGGACGTTCTGCACAGCCCTCACTaGTATCTTTCTTGGGCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: YINFSQVCSFSNKLKKDVLHSPH*YLSWAR Trigger: ACGAGCCCAAGAAAGATACCAGTGAGGGCTGTGCAG...AACGTCCTTCTTGAGCTTATTTGAAAAACTGCAGACCTGAGAGAAATTAATGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 90 bp | GCGCTCCTGGCGACGTCCGGCTGCCTAGGGGCGTCTTGCCACCGCTaGCACCGCGCGGCGCGGCTTCGGGCGCCGGGCTCAGCAGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: ALLATSGCLGASCHR*HRAARLRAPGSAGV Trigger: CACCCCTGCTGAGCCCGGCGCCCGAAGCCGCGCCGCGCGGTGGCAGCGGTGGCAAGACGCCCCTAGGCAGCCGGACGTCGCCAGGAGCGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS TCA 90 bp | GCGCGGCTTCGGGCGCCGGGCTCAGCAGGGGTGCCTCCACGCCGGTaGGAGGCGAGGAGGTTACGGGCTTGGGTGGCGCCAGGTCCCGCT | + |
|
Preference number: 5 (lower is better) Translates to: ARLRAPGSAGVPPRR*EARRLRAWVAPGPA Trigger: AGCGGGACCTGGCGCCACCCAAGCCCGTAACCTCCTCGCCTCTCACCGGCGTGGAGGCACCCCTGCTGAGCCCGGCGCCCGAAGCCGCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 90 bp | GGCGGCGGCGTCCGCCGAGTACTGCAGCGGGCTGCCGAAGCCGGTTaGCGCCTGCGCTGTGAAGGCCGCCGAGCCGGGGTACGGGCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: GGGVRRVLQRAAEAG*RLRCEGRRAGVRAE Trigger: TTCAGCCCGTACCCCGGCTCGGCGGCCTTCACAGCGCAGGCGGCAACCGGCTTCGGCAGCCCGCTGCAGTACTCGGCGGACGCCGCCGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 90 bp | GCGTCCGCCGAGTACTGCAGCGGGCTGCCGAAGCCGGTTGCCGCCTaGGCTGTGAAGGCCGCCGAGCCGGGGTACGGGCTGAACGCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: ASAEYCSGLPKPVAA*AVKAAEPGYGLNAE Trigger: CTCCGCGTTCAGCCCGTACCCCGGCTCGGCGGCCTTCACAGCGCAGGCGGCAACCGGCTTCGGCAGCCCGCTGCAGTACTCGGCGGACGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | GGCGGCAGCAGGCAGCCCCGGAGGCCCGCAACCCGGGCCCAAGCTTaGTTGCTTGAGGTCCGACGTGGCTATCTCGGCCAGCGACCACAG | + |
|
Preference number: 5 (lower is better) Translates to: GGSRQPRRPATRAQA*LLEVRRGYLGQRPQ Trigger: CTGTGGTCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGGGGCTGCCTGCTGCCGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 90 bp | CGCCCGGAGGCCTGTAGTGGGACTCCAGTGAATGCGAGCCCGCCTTaGCCGTGTCGCTGGCCGCCTTGGGCATGGCGTGCAGTGTCTCGC | + |
|
Preference number: 5 (lower is better) Translates to: RPEACSGTPVNASPP*PCRWPPWAWRAVSR Trigger: GCGAGACACTGCACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTCACTGGAGTCCCACTACAGGCCTCCGGGCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | ATGGTAGCTGATGGCGCCAGTCATTCCGGTGGTGTGCGTGTCGTATaGCGAGCCCACGTAGGACGGGAAGCCGGCAGCCGCGGCGGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: MVADGASHSGGVRVV*RAHVGREAGSRGGG Trigger: GCCGCCGCCGCGGCTGCCGGCTTCCCGTCCTACGTGGGCTCGCCATACGACACGCACACCACCGGAATGACTGGCGCCATCAGCTACCAT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS TCA 90 bp | CGTGTCGCTGGCCGCCTTGGGCATGGCGTGCAGTGTCTCGCCTGGTaGGGAGGCCGCGGTATTGTACCGCAGAAGGCCCTGGCCTTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RVAGRLGHGVQCLAW*GGRGIVPQKALALQ Trigger: CTGCAAGGCCAGGGCCTTCTGCGGTACAATACCGCGGCCTCCTCACCAGGCGAGACACTGCACGCCATGCCCAAGGCGGCCAGCGACACG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | ACTCCAGTGAATGCGAGCCCGCCTTGCCCGTGTCGCTGGCCGCCTTaGGCATGGCGTGCAGTGTCTCGCCTGGTGAGGAGGCCGCGGTAT | + |
|
Preference number: 5 (lower is better) Translates to: TPVNASPPCPCRWPP*AWRAVSRLVRRPRY Trigger: ATACCGCGGCCTCCTCACCAGGCGAGACACTGCACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTCACTGGAGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | GGTAGGACCACCTTTGGGGCAGGAACCAGGGCTACCGCTGGAGCTTCTACCCAAGCCAGCGACCACAGCTaGGGTTTGCTGGCGGGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: GRTTFGAGTRATAGASTQASDHS*GLLAGG Trigger: GCCGCCCGCCAGCAAACCCAAGCTGTGGTCGCTGGC...TTGGGTAGAAGCTCCAGCGGTAGCCCTGGTTCCTGCCCCAAAGGTGGTCCTACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | GGACGCCTGCACCAACAACTGCACAGCCCTCACTGGTATCTTTCTTaGGCTCGTAGCCGCCGCCCGGAGGCCTGTAGTGGGACTCCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GRLHQQLHSPHWYLS*ARSRRPEACSGTPV Trigger: CACTGGAGTCCCACTACAGGCCTCCGGGCGGCGGCTACGAGCCCAAGAAAGATACCAGTGAGGGCTGTGCAGTTGTTGGTGCAGGCGTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | GCGCGGCAGGGCAATTTTTCCCCATCTGACTCCGCTGAGCACGAGTaGTCCGTGAGCGAGTCGACGTGTAGACTGATCCCTTCGTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: ARQGNFSPSDSAEHE*SVSESTCRLIPSSS Trigger: GGAGGACGAAGGGATCAGTCTACACGTCGACTCGCTCACGGACCACTCGTGCTCAGCGGAGTCAGATGGGGAAAAATTGCCCTGCCGCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | GTACGCGGGGTCGTTGAGCTGGTATGGATAGGCCGCACTGCCATATaGATGGTAGCTGATGGCGCCAGTCATTCCGGTGGTGTGCGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: VRGVVELVWIGRTAI*MVADGASHSGGVRV Trigger: GACACGCACACCACCGGAATGACTGGCGCCATCAGCTACCATCCATATGGCAGTGCGGCCTATCCATACCAGCTCAACGACCCCGCGTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 90 bp | GTCCCGCGTAGCGTTCTTACGGTACGCGGGGTCGTTGAGCTGGTATaGATAGGCCGCACTGCCATATGGATGGTAGCTGATGGCGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: VPRSVLTVRGVVELV*IGRTAIWMVADGAS Trigger: ACTGGCGCCATCAGCTACCATCCATATGGCAGTGCGGCCTATCCATACCAGCTCAACGACCCCGCGTACCGTAAGAACGCTACGCGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000167067.2 |
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| CDS CCA 90 bp | ATAGGTAGGTCTGGACGCCTGCACCAACAACTGCACAGCCCTCACTaGTATCTTTCTTGGGCTCGTAGCCGCCGCCCGGAGGCCTGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: IGRSGRLHQQLHSPH*YLSWARSRRPEACS Trigger: ACTACAGGCCTCCGGGCGGCGGCTACGAGCCCAAGAAAGATACCAGTGAGGGCTGTGCAGTTGTTGGTGCAGGCGTCCAGACCTACCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | CAAGTTCTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTGGACCACAGCTTGGGTTaGCTGGCGGGCGGCGGCGCT | + |
|
Preference number: 5 (lower is better) Translates to: QVLICPNNVCPVLRVCGLDHSLG*LAGGGA Trigger: AGCGCCGCCGCCCGCCAGCAAACCCAAGCTGTGGTC...CAACCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAGAACTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 90 bp | CCTGGCCTTGCAGCGCTGCGTTTAAGTTCCCGTAGTTTGTGTAGTTaGCATAGAAAGGGGACGTGTAATAGAGGTGGCGGCCCAGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: PGLAALRLSSRSLCS*HRKGTCNRGGGPAG Trigger: CCCTGCTGGGCCGCCACCTCTATTACACGTCCCCTTTCTATGGCAACTACACAAACTACGGGAACTTAAACGCAGCGCTGCAAGGCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 90 bp | CAGAGGTCTCTGTGCCATCCTGTGCCTTGTCTGAACTCTCCTCCTTaGTTCTGGAAGCATCTCCCTCGTCCTCGTCCTCATCCTCGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: QRSLCHPVPCLNSPP*FWKHLPRPRPHPRF Trigger: AAAGCGAGGATGAGGACGAGGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCACAGAGACCTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | ACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTTGTATCTGTGTATTTATGAAGAATGCGAGCCCGCCTaGCCCGTGTCGCTGGCCGCC | + |
|
Preference number: 5 (lower is better) Translates to: TKCGPGFHIWGLYLCIYEECEPA*PVSLAA Trigger: GGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTC...TTCATAAATACACAGATACAAACCCCAGATGTGGAAACCCGGACCACATTTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | GCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGGGGTTCCCAAGCTTGGTTGCTaGAGGTCCGACGTGGCTATC | + |
|
Preference number: 5 (lower is better) Translates to: ASSYTVAQNVVRVSTSGVPKLGC*RSDVAI Trigger: GATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGG...AACCCCAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | ACATCTGGGGTTTGTATCTGTGTATTTATGAACTTGGGAAGGGAGAATAGCCTCCGGGCCCAAGCTTGGTaGCTTGAGGTCCGACGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: TSGVCICVFMNLGRENSLRAQAW*LEVRRG Trigger: GCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCG...GAGGCTATTCTCCCTTCCCAAGTTCATAAATACACAGATACAAACCCCAGATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | CAGTGCAGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCATCTGAACTCTCCTCCTaGCTTCTGGAAGCATCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: QCSVHPLIQWHKMWSGFPSELSS*LLEASP Trigger: GGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGA...TGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACTGCACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | CAACAAGTTCTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGGTGCCATCCTGTGCCTaGTCTGAACTCTCCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: QQVLICPNNVCPVLRVCGVPSCA*SELSSL Trigger: CAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCAC...CCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAGAACTTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | AGTGTGCATCCTCTTATACAGTGGCACAAAATGTGGTCCGGGTTTCCACATCTGTCCAGGTCCTCAAACTaGTCCTTACACTCTGAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SVHPLIQWHKMWSGFPHLSRSSN*SLHSEP Trigger: AGGCTCAGAGTGTAAGGACAAGTTTGAGGACCTGGA...CAGATGTGGAAACCCGGACCACATTTTGTGCCACTGTATAAGAGGATGCACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS-3UTR CAA 90 bp | CAACAAGTTCTCATATGCCCAAACAACGTGTGTCCAGTCCTTAGAGTCTGTGGGTTAAGTTCCCGTAGTTaGTGTAGTTGCCATAGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: QQVLICPNNVCPVLRVCGLSSRS*CSCHRK Trigger: CTTTCTATGGCAACTACACAAACTACGGGAACTTAA...CCCACAGACTCTAAGGACTGGACACACGTTGTTTGGGCATATGAGAACTTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GCGACGTCCGGCTGCCTAGGGGCGTCTTGCCACCGCTaGCACCGCGCGGCGCGGCTTCGGGCGCCGGGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: ATSGCLGASCHR*HRAARLRAPGS Trigger: TGAGCCCGGCGCCCGAAGCCGCGCCGCGCGGTGGCAGCGGTGGCAAGACGCCCCTAGGCAGCCGGACGTCGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GCGCTCCTGGCGACGTCCGGCTGCCTAGGGGCGTCTTaGCACCGCTGCCACCGCGCGGCGCGGCTTCGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: ALLATSGCLGAS*HRCHRAARLRA Trigger: CGCCCGAAGCCGCGCCGCGCGGTGGCAGCGGTGGCAAGACGCCCCTAGGCAGCCGGACGTCGCCAGGAGCGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GAGTACTGCAGCGGGCTGCCGAAGCCGGTTGCCGCCTaGGCTGTGAAGGCCGCCGAGCCGGGGTACGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: EYCSGLPKPVAA*AVKAAEPGYGL Trigger: CAGCCCGTACCCCGGCTCGGCGGCCTTCACAGCGCAGGCGGCAACCGGCTTCGGCAGCCCGCTGCAGTACTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GTCCGCCGAGTACTGCAGCGGGCTGCCGAAGCCGGTTaGCGCCTGCGCTGTGAAGGCCGCCGAGCCGGGGTA | + |
|
Preference number: 6 (lower is better) Translates to: VRRVLQRAAEAG*RLRCEGRRAGV Trigger: TACCCCGGCTCGGCGGCCTTCACAGCGCAGGCGGCAACCGGCTTCGGCAGCCCGCTGCAGTACTCGGCGGAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS TCA 72 bp | GTAGCCGCCGCCCGGAGGCCTGTAGTGGGACTCCAGTaGATGCGAGCCCGCCTTGCCCGTGTCGCTGGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: VAAARRPVVGLQ*MRARLARVAGR Trigger: GCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTCACTGGAGTCCCACTACAGGCCTCCGGGCGGCGGCTAC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 90 bp | AGCAGGGGTGCCTCCACGCCGGTGAGAGGCGAGGAGGTTACGGGCTaGGGTGGCGCCAGGTCCCGCTCGCACTCGTCTTCCTCGTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SRGASTPVRGEEVTG*GGARSRSHSSSSSS Trigger: GGAGGACGAGGAAGACGAGTGCGAGCGGGACCTGGCGCCACCCAAGCCCGTAACCTCCTCGCCTCTCACCGGCGTGGAGGCACCCCTGCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 90 bp | GGCAGCAGGCAGCCCCGGAGGCCCGCAACCCGGGCCCAAGCTTGGTaGCTTGAGGTCCGACGTGGCTATCTCGGCCAGCGACCACAGCTT | + |
|
Preference number: 6 (lower is better) Translates to: GSRQPRRPATRAQAW*LEVRRGYLGQRPQL Trigger: AAGCTGTGGTCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGGGGCTGCCTGCTGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 90 bp | GACTCCAGTGAATGCGAGCCCGCCTTGCCCGTGTCGCTGGCCGCCTaGGGCATGGCGTGCAGTGTCTCGCCTGGTGAGGAGGCCGCGGTA | + |
|
Preference number: 6 (lower is better) Translates to: DSSECEPALPVSLAA*GMACSVSPGEEAAV Trigger: TACCGCGGCCTCCTCACCAGGCGAGACACTGCACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTCACTGGAGTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | AGCCCCGGAGGCCCGCAACCCGGGCCCAAGCTTGGTTaGTTGAGGTCCGACGTGGCTATCTCGGCCAGCGAC | + |
|
Preference number: 6 (lower is better) Translates to: SPGGPQPGPKLG*LRSDVAISASD Trigger: GTCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGGGGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GCCTTGCCCGTGTCGCTGGCCGCCTTGGGCATGGCGTaGAGTGTCTCGCCTGGTGAGGAGGCCGCGGTATTG | + |
|
Preference number: 6 (lower is better) Translates to: ALPVSLAALGMA*SVSPGEEAAVL Trigger: CAATACCGCGGCCTCCTCACCAGGCGAGACACTGCACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | CACGCCGGTGAGAGGCGAGGAGGTTACGGGCTTGGGTaGCGCCAGGTCCCGCTCGCACTCGTCTTCCTCGTC | + |
|
Preference number: 6 (lower is better) Translates to: HAGERRGGYGLG*RQVPLALVFLV Trigger: GACGAGGAAGACGAGTGCGAGCGGGACCTGGCGCCACCCAAGCCCGTAACCTCCTCGCCTCTCACCGGCGTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | AGGCAGCCCCGGAGGCCCGCAACCCGGGCCCAAGCTTaGTTGCTTGAGGTCCGACGTGGCTATCTCGGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: RQPRRPATRAQA*LLEVRRGYLGQ Trigger: CTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGGGGCTGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 72 bp | CCCGGAGGCCCGCAACCCGGGCCCAAGCTTGGTTGCTaGAGGTCCGACGTGGCTATCTCGGCCAGCGACCAC | + |
|
Preference number: 6 (lower is better) Translates to: PGGPQPGPKLGC*RSDVAISASDH Trigger: GTGGTCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 72 bp | CAGCCCCGGAGGCCCGCAACCCGGGCCCAAGCTTGGTaGCTTGAGGTCCGACGTGGCTATCTCGGCCAGCGA | + |
|
Preference number: 6 (lower is better) Translates to: QPRRPATRAQAW*LEVRRGYLGQR Trigger: TCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGGGGCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS TCA 72 bp | CCGGAGGCCCGCAACCCGGGCCCAAGCTTGGTTGCTTaGGGTCCGACGTGGCTATCTCGGCCAGCGACCACA | + |
|
Preference number: 6 (lower is better) Translates to: PEARNPGPSLVA*GPTWLSRPATT Trigger: TGTGGTCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCGGGTTGCGGGCCTCCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS TCA 72 bp | GGCCGCCTTGGGCATGGCGTGCAGTGTCTCGCCTGGTaGGGAGGCCGCGGTATTGTACCGCAGAAGGCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: GRLGHGVQCLAW*GGRGIVPQKAL Trigger: CAGGGCCTTCTGCGGTACAATACCGCGGCCTCCTCACCAGGCGAGACACTGCACGCCATGCCCAAGGCGGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GCCTGTAGTGGGACTCCAGTGAATGCGAGCCCGCCTTaGCCGTGTCGCTGGCCGCCTTGGGCATGGCGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: ACSGTPVNASPP*PCRWPPWAWRA Trigger: TGCACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTCACTGGAGTCCCACTACAGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | GATGGCGCCAGTCATTCCGGTGGTGTGCGTGTCGTATaGCGAGCCCACGTAGGACGGGAAGCCGGCAGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: DGASHSGGVRVV*RAHVGREAGSR Trigger: GCGGCTGCCGGCTTCCCGTCCTACGTGGGCTCGCCATACGACACGCACACCACCGGAATGACTGGCGCCATC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | CACCAACAACTGCACAGCCCTCACTGGTATCTTTCTTaGGCTCGTAGCCGCCGCCCGGAGGCCTGTAGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: HQQLHSPHWYLS*ARSRRPEACSG Trigger: CCCACTACAGGCCTCCGGGCGGCGGCTACGAGCCCAAGAAAGATACCAGTGAGGGCTGTGCAGTTGTTGGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 90 bp | CTGATCCCTTCGTCCTCCGCAGAGGTCTCTGTGCCATCCTGTGCCTaGTCTGAACTCTCCTCCTTGCTTCTGGAAGCATCTCCCTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: LIPSSSAEVSVPSCA*SELSSLLLEASPSS Trigger: GGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCACAGAGACCTCTGCGGAGGACGAAGGGATCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS TCA 72 bp | GGTATGGATAGGCCGCACTGCCATATGGATGGTAGCTaGTGGCGCCAGTCATTCCGGTGGTGTGCGTGTCGT | + |
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Preference number: 6 (lower is better) Translates to: GMDRPHCHMDGS*WRQSFRWCACR Trigger: ACGACACGCACACCACCGGAATGACTGGCGCCATCAGCTACCATCCATATGGCAGTGCGGCCTATCCATACC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 90 bp | GCAGAGGTCTCTGTGCCATCCTGTGCCTTGTCTGAACTCTCCTCCTaGCTTCTGGAAGCATCTCCCTCGTCCTCGTCCTCATCCTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: AEVSVPSCALSELSS*LLEASPSSSSSSSL Trigger: AAGCGAGGATGAGGACGAGGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCACAGAGACCTCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | GTCGTTGAGCTGGTATGGATAGGCCGCACTGCCATATaGATGGTAGCTGATGGCGCCAGTCATTCCGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: VVELVWIGRTAI*MVADGASHSGG Trigger: ACCACCGGAATGACTGGCGCCATCAGCTACCATCCATATGGCAGTGCGGCCTATCCATACCAGCTCAACGAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | GGCAATTTTTCCCCATCTGACTCCGCTGAGCACGAGTaGTCCGTGAGCGAGTCGACGTGTAGACTGATCCCT | + |
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Preference number: 6 (lower is better) Translates to: GNFSPSDSAEHE*SVSESTCRLIP Trigger: AGGGATCAGTCTACACGTCGACTCGCTCACGGACCACTCGTGCTCAGCGGAGTCAGATGGGGAAAAATTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 90 bp | GCAGAAGGCCCTGGCCTTGCAGCGCTGCGTTTAAGTTCCCGTAGTTaGTGTAGTTGCCATAGAAAGGGGACGTGTAATAGAGGTGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: AEGPGLAALRLSSRS*CSCHRKGTCNRGGG Trigger: GCCGCCACCTCTATTACACGTCCCCTTTCTATGGCAACTACACAAACTACGGGAACTTAAACGCAGCGCTGCAAGGCCAGGGCCTTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | CTGTGCCATCCTGTGCCTTGTCTGAACTCTCCTCCTTaGTTCTGGAAGCATCTCCCTCGTCCTCGTCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LCHPVPCLNSPP*FWKHLPRPRPH Trigger: ATGAGGACGAGGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CCA 72 bp | AGCGTTCTTACGGTACGCGGGGTCGTTGAGCTGGTATaGATAGGCCGCACTGCCATATGGATGGTAGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SVLTVRGVVELV*IGRTAIWMVAD Trigger: ATCAGCTACCATCCATATGGCAGTGCGGCCTATCCATACCAGCTCAACGACCCCGCGTACCGTAAGAACGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074372.6 ENSMUST00000167067.2 |
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| CDS CAA 72 bp | TCTGTGCCATCCTGTGCCTTGTCTGAACTCTCCTCCTaGCTTCTGGAAGCATCTCCCTCGTCCTCGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: SVPSCALSELSS*LLEASPSSSSS Trigger: TGAGGACGAGGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCACAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 72 bp | TCGTCCTCCGCAGAGGTCTCTGTGCCATCCTGTGCCTaGTCTGAACTCTCCTCCTTGCTTCTGGAAGCATCT | + |
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Preference number: 6 (lower is better) Translates to: SSSAEVSVPSCA*SELSSLLLEAS Trigger: AGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGATGGCACAGAGACCTCTGCGGAGGACGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 72 bp | TCTTCCTCGTCCTCCTCGTCCTCCAGGTCCTCAAACTaGTCCTTACACTCTGAGCCTGATTCGCACAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: SSSSSSSSRSSN*SLHSEPDSHKA Trigger: TGCCTTGTGCGAATCAGGCTCAGAGTGTAAGGACAAGTTTGAGGACCTGGAGGACGAGGAGGACGAGGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS GCA 72 bp | GCAGCGCTGCGTTTAAGTTCCCGTAGTTTGTGTAGTTaGCATAGAAAGGGGACGTGTAATAGAGGTGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: AALRLSSRSLCS*HRKGTCNRGGG Trigger: GCCGCCACCTCTATTACACGTCCCCTTTCTATGGCAACTACACAAACTACGGGAACTTAAACGCAGCGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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| CDS CAA 72 bp | CCTGGCCTTGCAGCGCTGCGTTTAAGTTCCCGTAGTTaGTGTAGTTGCCATAGAAAGGGGACGTGTAATAGA | + |
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Preference number: 6 (lower is better) Translates to: PGLAALRLSSRS*CSCHRKGTCNR Trigger: TCTATTACACGTCCCCTTTCTATGGCAACTACACAAACTACGGGAACTTAAACGCAGCGCTGCAAGGCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074372.6 |
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