Pregenerated sensors for IRX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060969Ensembl transcript IDs: ENSMUST00000077337.9, ENSMUST00000223379.2, ENSMUST00000223460.2
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGCGCTTAGGCAGGATGAGCCCCTTTCTGCAGAGAGCGATGTGTaGGAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTC | + |
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Preference number: 1 (lower is better) Translates to: QALRQDEPLSAESDV*ESLTLPSRLSFTQV Trigger: GACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACATCGCTCTCTGCAGAAAGGGGCTCATCCTGCCTAAGCGCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR TCA 90 bp | GGCAGGATGAGCCCCTTTCTGCAGAGAGCGATGTGTGAGAATCACTaGCGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAATATTT | + |
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Preference number: 1 (lower is better) Translates to: GRMSPFLQRAMCENH*RCRHVCPLHKSQIF Trigger: AAATATTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACATCGCTCTCTGCAGAAAGGGGCTCATCCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR-3UTR TCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATCACGGACTGTGCGCCTaGCACTCGGTGGAAACACTG | + |
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Preference number: 2 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNHGLCA*HSVETL Trigger: CAGTGTTTCCACCGAGTGTCAGGCGCACAGTCCGTG...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR-3UTR TCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATCGAAACCATAGCCCCTaGACTGTGCCCAGGATTTCA | + |
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Preference number: 2 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNRNHSP*TVPRIS Trigger: TGAAATCCTGGGCACAGTTCAGGGGCTATGGTTTCG...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR-3UTR GCA 90 bp | GATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCATAGCCCCTGAACTGTaGCCAGGATTTCAAGATCGC | + |
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Preference number: 2 (lower is better) Translates to: DLHCQQEAGLGAKRTNSTIAPEL*PGFQDR Trigger: GCGATCTTGAAATCCTGGGCACAGTTCAGGGGCTAT...GGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR-3UTR CCA 90 bp | CAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAGATCGCAAACATCATaGCCTCCCCCAAAACGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QRFTLPTRSWPRSKTNKFRSQTS*PPPKRR Trigger: CCTGCGTTTTGGGGGAGGCCATGATGTTTGCGATCT...GAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCGCGCTATTTACAATCTaGAATCACGCTATATACAGA | + |
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Preference number: 2 (lower is better) Translates to: QRFTLPTRSWPRSKTNKFALFTI*NHAIYR Trigger: TCTGTATATAGCGTGATTTCAGATTGTAAATAGCGC...GAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR TCA 72 bp | AGGCAGGATGAGCCCCTTTCTGCAGAGAGCGATGTGTaGGAATCACTGACGCTGCCGTCACGTTTGTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: RQDEPLSAESDV*ESLTLPSRLSF Trigger: AAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACATCGCTCTCTGCAGAAAGGGGCTCATCCTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR-3UTR CAA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCACGCTGCCGTCACGTTaGTCCTTTACACAAGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: KHHGLPQNAGGQGQTAVATLPSR*SFTQVS Trigger: TGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGT...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR TCA 72 bp | AGCCCCTTTCTGCAGAGAGCGATGTGTGAGAATCACTaGCGCTGCCGTCACGTTTGTCCTTTACACAAGTCT | + |
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Preference number: 3 (lower is better) Translates to: SPFLQRAMCENH*RCRHVCPLHKS Trigger: AGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACATCGCTCTCTGCAGAAAGGGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR GCA 72 bp | CCAAAAGAGTCTGGCGAAACCATAGCCCCTGAACTGTaGCCAGGATTTCAAGATCGCAAACATCATGGCCTC | + |
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Preference number: 3 (lower is better) Translates to: PKESGETIAPEL*PGFQDRKHHGL Trigger: GAGGCCATGATGTTTGCGATCTTGAAATCCTGGGCACAGTTCAGGGGCTATGGTTTCGCCAGACTCTTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| 3UTR TCA 72 bp | CCTTCTCCCAAAAGAGTCTGGCGAAACCATAGCCCCTaGACTGTGCCCAGGATTTCAAGATCGCAAACATCA | + |
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Preference number: 3 (lower is better) Translates to: PSPKRVWRNHSP*TVPRISRSQTS Trigger: TGATGTTTGCGATCTTGAAATCCTGGGCACAGTTCAGGGGCTATGGTTTCGCCAGACTCTTTTGGGAGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | CCCCAGCCTCTTCGGGCAGAGCCCGGGCTAGAGCTAGACCGCCTCCCAACAGTCCATGGAGCACCCCGGTaGCAACCTGGACTGGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: PQPLRAEPGLELDRLPTVHGAPR*QPGLAA Trigger: AGCCGCCAGTCCAGGTTGCCACCGGGGTGCTCCATG...GACTGTTGGGAGGCGGTCTAGCTCTAGCCCGGGCTCTGCCCGAAGAGGCTGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR CCA 90 bp | TCTTCGGGCAGAGCCCGGGCTAGAGCTAGACCGCCTCCCAACAGTCTCCCTGCTACCCCGGTGGCAACCTaGACTGGCGGCTGTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: SSGRARARARPPPNSLPATPVAT*TGGCGG Trigger: ACCTCCACAGCCGCCAGTCCAGGTTGCCACCGGGGT...AGCAGGGAGACTGTTGGGAGGCGGTCTAGCTCTAGCCCGGGCTCTGCCCGAAGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR GCA 90 bp | TCTTCGGGCAGAGCCCGGGCTAGAGCTAGACCGCCTCCCAACAGTCTCCCTGCTCTGGAAGTGCAGGACTaGTGCGTGCGGAGGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SSGRARARARPPPNSLPALEVQD*CVRRPS Trigger: AGAAGGCCTCCGCACGCAGCAGTCCTGCACTTCCAG...AGCAGGGAGACTGTTGGGAGGCGGTCTAGCTCTAGCCCGGGCTCTGCCCGAAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR CCA 90 bp | GAGCCCGGGCTAGAGCTAGACCGCCTCCCAACAGTCTCCCTGCTCCAGAGAACTCTGGACTGGCGGCTGTaGAGGTGGTGGTGCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: EPGLELDRLPTVSLLQRTLDWRL*RWWCCQ Trigger: CTGACAGCACCACCACCTCCACAGCCGCCAGTCCAG...AGTTCTCTGGAGCAGGGAGACTGTTGGGAGGCGGTCTAGCTCTAGCCCGGGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR GCA 90 bp | CCCAAGCGCTTAGGCAGGATGAGCCCCTTTCTGCAGAGAGCGATGTGTGAGAATGGCGCTGTAGTTGGGTaGGCCCGCGTACGGTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: PKRLGRMSPFLQRAMCENGAVVG*ARVRSR Trigger: GCGGGACCGTACGCGGGCGCACCCAACTACAGCGCC...ATTCTCACACATCGCTCTCTGCAGAAAGGGGCTCATCCTGCCTAAGCGCTTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | TCTTCGGGCAGAGCCCGGGCTAGAGCTAGACCGCCTCCCAACAGTCTCCCTGCTGTCTCTCTCTGGAAGTaGAGGACTGCTGCGTGCGGA | + |
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Preference number: 4 (lower is better) Translates to: SSGRARARARPPPNSLPAVSLWK*RTAACG Trigger: TCCGCACGCAGCAGTCCTGCACTTCCAGAGAGAGAC...AGCAGGGAGACTGTTGGGAGGCGGTCTAGCTCTAGCCCGGGCTCTGCCCGAAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR TCA 90 bp | ACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCGCTCTGCGAGAAGAGGCTaGGGTCCGCGGCATAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: TSWPPPKRRRTGTNSCSRSARRG*GPRHRA Trigger: TGCCCTATGCCGCGGACCTCAGCCTCTTCTCGCAGA...GCGGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | CTAGAGCTAGACCGCCTCCCAACAGTCTCCCTGCTCCAGAGAACTGGAGCAAGCTGGCGGCTGTGGAGGTaGTGGTGCTGTCAGGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LELDRLPTVSLLQRTGASWRLWR*WCCQVW Trigger: CCACACCTGACAGCACCACCACCTCCACAGCCGCCA...GCTTGCTCCAGTTCTCTGGAGCAGGGAGACTGTTGGGAGGCGGTCTAGCTCTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR GCA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCGCCAGGCTTTCAGCGTaGTGGTGCTCTCCCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: KHHGLPQNAGGQGQTAVAARLSA*WCSPAW Trigger: CCACGCGGGAGAGCACCAGCACGCTGAAAGCCTGGC...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | ACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCGCCAGGTGTACAGTCCGTaGCTGGGTAGAAAGGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: TSWPPPKRRRTGTNSCSRQVYSP*LGRKAG Trigger: CCCGGCCTTTCTACCCAGCCACGGACTGTACACCTG...GCGGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | CCCAAGCGCTTAGGCAGGATGAGCCCCTTTCTGCAGAGAGCGATGTGTGAGAATCATGGAGCACCCCGGTaGCAACCTGGACTGGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: PKRLGRMSPFLQRAMCENHGAPR*QPGLAA Trigger: AGCCGCCAGTCCAGGTTGCCACCGGGGTGCTCCATG...ATTCTCACACATCGCTCTCTGCAGAAAGGGGCTCATCCTGCCTAAGCGCTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCAGGCGTTGTGTGGGCTaGGAAGGTCGCTGGGTGCAC | + |
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Preference number: 4 (lower is better) Translates to: KHHGLPQNAGGQGQTAVARRCVG*EGRWVH Trigger: GTGCACCCAGCGACCTTCGCAGCCCACACAACGCCT...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCCTGTGGAGGTGGTGGTaGTGTCAGGTGTGGGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: KHHGLPQNAGGQGQTAVALWRWW*CQVWAV Trigger: CACGGCCCACACCTGACAGCACCACCACCTCCACAG...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | TGTGTGAGAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAACCCGCGTGGCGTTCTTaGGCCGTCCGGGATCCCCGT | + |
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Preference number: 4 (lower is better) Translates to: CVRITDAAVTFVLYTSLKPAWRS*AVRDPR Trigger: ACGGGGATCCCGGACGGCCCAAGAACGCCACGCGGG...TTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACAGGGCGCCGTCTTCCTaGTCCTTGCTGCGCGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYRAPSS*SLLRAP Trigger: GGGGGCGCGCAGCAAGGACCAGGAAGACGGCGCCCT...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACATCTTGGGCTTGCTGTaGGGCGCGCCCTGCAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYILGLL*GAPCRP Trigger: CGGCCTGCAGGGCGCGCCGCACAGCAAGCCCAAGAT...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCTTGTCGCGCACCGGCTaGAAGGGCGACTTTAACTGT | + |
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Preference number: 4 (lower is better) Translates to: KHHGLPQNAGGQGQTAVALSRTG*KGDFNC Trigger: ACAGTTAAAGTCGCCCTTCCAGCCGGTGCGCGACAA...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATGGCAGACGGGAGGGCTaGGAGGATCCGAGGCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNGRREG*EDPRRS Trigger: GGAACGCCTCGGATCCTCGCAGCCCTCCCGTCTGCC...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR TCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACTGTGCTGCCGGGCTCTaGGACCTCCTTAACCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYCAAGL*DLLNQA Trigger: GGCCTGGTTAAGGAGGTCTCAGAGCCCGGCAGCACA...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATGCGAAGGTCGCTGGGTaGACCCCGGGGTTGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNAKVAG*TPGLSF Trigger: GAAGGACAACCCCGGGGTGCACCCAGCGACCTTCGC...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | GATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCCGCCCTCGGTGTCGCTaGCAAAGAGGGCGCCGTCTT | + |
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Preference number: 4 (lower is better) Translates to: DLHCQQEAGLGAKRTNSTRPRCR*QRGRRL Trigger: AAGACGGCGCCCTCTTTGGCAGCGACACCGAGGGCG...GGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | TGTGTGAGAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAAGACTCAGCAGGCGTGTaGTGCCGGGCTCTGAGACCT | + |
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Preference number: 4 (lower is better) Translates to: CVRITDAAVTFVLYTSLKDSAGV*CRALRP Trigger: AGGTCTCAGAGCCCGGCAGCACACGCCTGCTGAGTC...TTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | TGTGTGAGAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAAACCAGATCTTGGGCTTaGTGTGCGGCGCGCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: CVRITDAAVTFVLYTSLKTRSWA*CAARPA Trigger: TGCAGGGCGCGCCGCACAGCAAGCCCAAGATCTGGT...TTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | AGCTGTATGAGAAACAGCAAGAAGACACCAGCAATGAGTAAACAGATCCAGCGCCTGTGGAGGTGGTGGTaGTGTCAGGTGTGGGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: SCMRNSKKTPAMSKQIQRLWRWW*CQVWAV Trigger: CACGGCCCACACCTGACAGCACCACCACCTCCACAG...GCGCTGGATCTGTTTACTCATTGCTGGTGTCTTCTTGCTGTTTCTCATACAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR GCA 90 bp | CAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCCGAGGCGTTCCCTCCTaGGGGGCCAGCGAGTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: QRFTLPTRSWPRSKTNKFRGVPS*GASELS Trigger: CGACAACTCGCTGGCCCCGCAGGAGGGAACGCCTCG...GAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAATATTTGTGGCTGCGAAGGTCGCTaGGTGCACCCCGGGGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ESLTLPSRLSFTQVSNICGCEGR*VHPGVV Trigger: GACAACCCCGGGGTGCACCCAGCGACCTTCGCAGCC...ACAAATATTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACAGGCTTTCAGCGTGCTaGTGCTCTCCCGCGTGGCGT | + |
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Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYRLSAC*CSPAWR Trigger: ACGCCACGCGGGAGAGCACCAGCACGCTGAAAGCCT...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACCTGGACTGGCGGCTGTaGAGGTGGTGGTGCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYLDWRL*RWWCCQ Trigger: CTGACAGCACCACCACCTCCACAGCCGCCAGTCCAG...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATACCCCGGTGGCAACCTaGACTGGCGGCTGTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNTPVAT*TGGCGG Trigger: ACCTCCACAGCCGCCAGTCCAGGTTGCCACCGGGGT...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTGGCGGCTGTGGAGGTaGTGGTGCTGTCAGGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNWRLWR*WCCQVW Trigger: CCACACCTGACAGCACCACCACCTCCACAGCCGCCA...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATCTGGAAGTGCAGGACTaGTGCGTGCGGAGGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNLEVQD*CVRRPS Trigger: AGAAGGCCTCCGCACGCAGCAGTCCTGCACTTCCAG...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAATATTTGTAGAAGGCGCTGTAGTTaGGTGCGCCCGCGTACGGTC | + |
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Preference number: 4 (lower is better) Translates to: ESLTLPSRLSFTQVSNICRRRCS*VRPRTV Trigger: GACCGTACGCGGGCGCACCCAACTACAGCGCCTTCT...ACAAATATTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAATATTTGTGACAATGGGGAGCTCTaGTCCCGAGCTGAGGCGGGA | + |
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Preference number: 4 (lower is better) Translates to: ESLTLPSRLSFTQVSNICDNGEL*SRAEAG Trigger: TCCCGCCTCAGCTCGGGACCAGAGCTCCCCATTGTC...ACAAATATTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | CAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCCCAGAGACCAGATCTTaGGCTTGCTGTGCGGCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: QRFTLPTRSWPRSKTNKFPETRS*ACCAAR Trigger: GCGCGCCGCACAGCAAGCCCAAGATCTGGTCTCTGG...GAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCTCCAGTTGGAAAACTTaGCTATGTGACAGGTGTACA | + |
|
Preference number: 4 (lower is better) Translates to: KHHGLPQNAGGQGQTAVASSWKT*LCDRCT Trigger: TGTACACCTGTCACATAGGCAAGTTTTCCAACTGGA...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GCGAGCTGTATGAGAAACAGCAAGAAGACACCAGCAATGAGTAAACAGATCCAGTTGTCGCGCACCGGCTaGAAGGGCGACTTTAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: ASCMRNSKKTPAMSKQIQLSRTG*KGDFNC Trigger: ACAGTTAAAGTCGCCCTTCCAGCCGGTGCGCGACAA...CTGGATCTGTTTACTCATTGCTGGTGTCTTCTTGCTGTTTCTCATACAGCTCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223379.2 |
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| CDS-3UTR TCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACCCCAAGGGCGAATCTTaGGACTTGAGTGTCTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYPKGES*DLSVSA Trigger: TGCTGAGACACTCAAGTCTCAAGATTCGCCCTTGGG...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR GCA 90 bp | AGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACGTCTCTCTCTGGAAGTaGAGGACTGCTGCGTGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: RFTLPTRSWPRSKTNKFNVSLWK*RTAACG Trigger: TCCGCACGCAGCAGTCCTGCACTTCCAGAGAGAGAC...GTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | TGTGTGAGAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAACTAGGAACGCGCCGTTaGTCCAGTTGGAAAACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: CVRITDAAVTFVLYTSLKLGTRR*SSWKTC Trigger: GCAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAG...TTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTCTCACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
||
| CDS-3UTR TCA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACTCCTTCAGTTCATACTaGGAGCCCATCTGCGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYSFSSY*EPICEK Trigger: CTTCTCGCAGATGGGCTCTCAGTATGAACTGAAGGA...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GAATCACTGACGCTGCCGTCACGTTTGTCCTTTACACAAGTCTCAAATATTTGTTGTACAGTCCGTGGCTaGGTAGAAAGGCCGGGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: ESLTLPSRLSFTQVSNICCTVRG*VERPGV Trigger: AACACCCGGCCTTTCTACCCAGCCACGGACTGTACA...ACAAATATTTGAGACTTGTGTAAAGGACAAACGTGACGGCAGCGTCAGTGATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR TCA 90 bp | AGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACTCACGCTCGTCGATCTaGTCGATGTCAATGCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RFTLPTRSWPRSKTNKFNSRSSI*SMSMLS Trigger: GGAGAGCATTGACATCGATCAGATCGACGAGCGTGA...GTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR TCA 90 bp | GATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCGAAAACTTGCCTATGTaGCAGGTGTACAGTCCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: DLHCQQEAGLGAKRTNSTENLPM*QVYSPW Trigger: CCACGGACTGTACACCTGTCACATAGGCAAGTTTTC...GGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CCA 90 bp | GGCAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATCGCCGTTGGTCCAGTTaGAAAACTTGCCTATGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: GKDLHCQQEAGLGAKRTNRRWSS*KTCLCD Trigger: GTCACATAGGCAAGTTTTCCAACTGGACCAACGGCG...ATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CCA 90 bp | GGGTGTTGCAGGGGTGAGCCGCTGGGCGGCCCGTGTGCGCTGGCGTaGCTTGAGGGTGGCGGTGGAGACGCCTTAGGCGCACCATCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: GCCRGEPLGGPCALA*LEGGGGDALGAPSG Trigger: CCCCGATGGTGCGCCTAAGGCGTCTCCACCGCCACCCTCAAGCCACGCCAGCGCACACGGGCCGCCCAGCGGCTCACCCCTGCAACACCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS CCA 90 bp | GTCCGTGGCTGGGTAGAAAGGCCGGGTGTTGCAGGGGTGAGCCGCTaGGCGGCCCGTGTGCGCTGGCGTGGCTTGAGGGTGGCGGTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: VRGWVERPGVAGVSR*AARVRWRGLRVAVE Trigger: CTCCACCGCCACCCTCAAGCCACGCCAGCGCACACGGGCCGCCCAGCGGCTCACCCCTGCAACACCCGGCCTTTCTACCCAGCCACGGAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CCA 90 bp | GGCAACCTGGACTGGCGGCTGTGGAGGTGGTGGTGCTGTCAGGTGTaGGCCGTGAGGTGCTGCATGCGGCGCGCTGACGCCCAGGAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: GNLDWRLWRWWCCQV*AVRCCMRRADAQER Trigger: TCTTTCCTGGGCGTCAGCGCGCCGCATGCAGCACCTCACGGCCCACACCTGACAGCACCACCACCTCCACAGCCGCCAGTCCAGGTTGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS TCA 90 bp | TGGACTGGCGGCTGTGGAGGTGGTGGTGCTGTCAGGTGTGGGCCGTaGGGTGCTGCATGCGGCGCGCTGACGCCCAGGAAAGATCGCATG | + |
|
Preference number: 5 (lower is better) Translates to: WTGGCGGGGAVRCGP*GAACGALTPRKDRM Trigger: CATGCGATCTTTCCTGGGCGTCAGCGCGCCGCATGCAGCACCTCACGGCCCACACCTGACAGCACCACCACCTCCACAGCCGCCAGTCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS TCA 90 bp | GACCGCCGCGGCGCCAGGACTCAGCAGGCGTGTGCTGCCGGGCTCTaGGACCTCCTTAACCAGGCCCAAGGGCGAATCTTGAGACTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: DRRGARTQQACAAGL*DLLNQAQGRILRLE Trigger: CTCAAGTCTCAAGATTCGCCCTTGGGCCTGGTTAAGGAGGTCTCAGAGCCCGGCAGCACACGCCTGCTGAGTCCTGGCGCCGCGGCGGTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS CCA 90 bp | CTCTCTGGAAGTGCAGGACTGCTGCGTGCGGAGGCCTTCTCACCATaGAGCACCCCGGTGGCAACCTGGACTGGCGGCTGTGGAGGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: LSGSAGLLRAEAFSP*STPVATWTGGCGGG Trigger: ACCACCTCCACAGCCGCCAGTCCAGGTTGCCACCGGGGTGCTCCATGGTGAGAAGGCCTCCGCACGCAGCAGTCCTGCACTTCCAGAGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS TCA 90 bp | GTGGTGCTGTCAGGTGTGGGCCGTGAGGTGCTGCATGCGGCGCGCTaGCGCCCAGGAAAGATCGCATGTTCAGCAGCGAGCCCTGTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: VVLSGVGREVLHAAR*RPGKIACSAASPVL Trigger: TAGCACAGGGCTCGCTGCTGAACATGCGATCTTTCCTGGGCGTCAGCGCGCCGCATGCAGCACCTCACGGCCCACACCTGACAGCACCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS CCA 90 bp | TCCAGTTGGAAAACTTGCCTATGTGACAGGTGTACAGTCCGTGGCTaGGTAGAAAGGCCGGGTGTTGCAGGGGTGAGCCGCTGGGCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: SSWKTCLCDRCTVRG*VERPGVAGVSRWAA Trigger: GGCCGCCCAGCGGCTCACCCCTGCAACACCCGGCCTTTCTACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS TCA 90 bp | CTGCCGGGCTCTGAGACCTCCTTAACCAGGCCCAAGGGCGAATCTTaGGACTTGAGTGTCTCAGCAGCCGACAATGGGGAGCTCTGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: LPGSETSLTRPKGES*DLSVSAADNGELWS Trigger: GGACCAGAGCTCCCCATTGTCGGCTGCTGAGACACTCAAGTCTCAAGATTCGCCCTTGGGCCTGGTTAAGGAGGTCTCAGAGCCCGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS TCA 90 bp | GCTGGAAGGGCGACTTTAACTGTTGTGGGGGCGAATCCGGTCTGGTaGCTAGGTCTCTCTCTGGAAGTGCAGGACTGCTGCGTGCGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: AGRATLTVVGANPVW*LGLSLEVQDCCVRR Trigger: CCTCCGCACGCAGCAGTCCTGCACTTCCAGAGAGAGACCTAGTCACCAGACCGGATTCGCCCCCACAACAGTTAAAGTCGCCCTTCCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS GCA 90 bp | GCGAGCCCTGTGCTAGGAACGCGCCGTTGGTCCAGTTGGAAAACTTaGCTATGTGACAGGTGTACAGTCCGTGGCTGGGTAGAAAGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: ASPVLGTRRWSSWKT*LCDRCTVRGWVERP Trigger: CGGCCTTTCTACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGCACAGGGCTCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CAA 90 bp | CCCAAGCGCTTAGGCAGGATGAGCCCCTTTCTGCAGAGAGCGATGTGTGAGAATTCCTCTTCGTCTTCGTaGCTCTGGTCGCCATCACGC | + |
|
Preference number: 5 (lower is better) Translates to: PKRLGRMSPFLQRAMCENSSSSS*LWSPSR Trigger: GCGTGATGGCGACCAGAGCAACGAAGACGAAGAGGA...ATTCTCACACATCGCTCTCTGCAGAAAGGGGCTCATCCTGCCTAAGCGCTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CAA 90 bp | AAACATCATGGCCTCCCCCAAAACGCAGGAGGACAGGGACAAACAGCTGTAGCCGATAATAAGCAGGCGTaGTGTGGGCTGCGAAGGTCG | + |
|
Preference number: 5 (lower is better) Translates to: KHHGLPQNAGGQGQTAVADNKQA*CGLRRS Trigger: CGACCTTCGCAGCCCACACAACGCCTGCTTATTATC...GGCTACAGCTGTTTGTCCCTGTCCTCCTGCGTTTTGGGGGAGGCCATGATGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CCA 90 bp | AAGATCGCATGTTCAGCAGCGAGCCCTGTGCTAGGAACGCGCCGTTaGTCCAGTTGGAAAACTTGCCTATGTGACAGGTGTACAGTCCGT | + |
|
Preference number: 5 (lower is better) Translates to: KIACSAASPVLGTRR*SSWKTCLCDRCTVR Trigger: ACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGCACAGGGCTCGCTGCTGAACATGCGATCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CAA 90 bp | CAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCTGCGGGGCCAGCGAGTaGTCGCGCACCGGCTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: QRFTLPTRSWPRSKTNKFCGASE*SRTGWK Trigger: CTTCCAGCCGGTGCGCGACAACTCGCTGGCCCCGCA...GAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CAA 90 bp | CAAAGATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCGACCAGATCTTGGGCTaGCTGTGCGGCGCGCCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QRFTLPTRSWPRSKTNKFDQILG*LCGAPC Trigger: GCAGGGCGCGCCGCACAGCAAGCCCAAGATCTGGTC...GAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CAA 90 bp | GATTTACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCGCCAGAGACCAGATCTaGGGCTTGCTGTGCGGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: DLHCQQEAGLGAKRTNSTARDQI*GLLCGA Trigger: CGCGCCGCACAGCAAGCCCAAGATCTGGTCTCTGGC...GGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGTAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS-3UTR CAA 90 bp | ACACTGCCAACAAGAAGCTGGCCTAGGAGCAAAACGAACAAATTCAACCACTACGCTAGGAACGCGCCGTaGGTCCAGTTGGAAAACTTG | + |
|
Preference number: 5 (lower is better) Translates to: TLPTRSWPRSKTNKFNHYARNAP*VQLENL Trigger: CAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGC...GTAGTGGTTGAATTTGTTCGTTTTGCTCCTAGGCCAGCTTCTTGTTGGCAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS GCA 72 bp | AGAGACCAGATCTTGGGCTTGCTGTGCGGCGCGCCCTaGAGGCCGACCGCCGCGGCGCCAGGACTCAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RDQILGLLCGAP*RPTAAAPGLSR Trigger: CCTGCTGAGTCCTGGCGCCGCGGCGGTCGGCCTGCAGGGCGCGCCGCACAGCAAGCCCAAGATCTGGTCTCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS GCA 72 bp | GACGGGAGGGCTGCGAGGATCCGAGGCGTTCCCTCCTaGGGGGCCAGCGAGTTGTCGCGCACCGGCTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: DGRAARIRGVPS*GASELSRTGWK Trigger: CTTCCAGCCGGTGCGCGACAACTCGCTGGCCCCGCAGGAGGGAACGCCTCGGATCCTCGCAGCCCTCCCGTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CCA 72 bp | TGGGTAGAAAGGCCGGGTGTTGCAGGGGTGAGCCGCTaGGCGGCCCGTGTGCGCTGGCGTGGCTTGAGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: WVERPGVAGVSR*AARVRWRGLRV Trigger: CACCCTCAAGCCACGCCAGCGCACACGGGCCGCCCAGCGGCTCACCCCTGCAACACCCGGCCTTTCTACCCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CCA 72 bp | GACTGGCGGCTGTGGAGGTGGTGGTGCTGTCAGGTGTaGGCCGTGAGGTGCTGCATGCGGCGCGCTGACGCC | + |
|
Preference number: 6 (lower is better) Translates to: DWRLWRWWCCQV*AVRCCMRRADA Trigger: GGCGTCAGCGCGCCGCATGCAGCACCTCACGGCCCACACCTGACAGCACCACCACCTCCACAGCCGCCAGTC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS GCA 72 bp | GTCCGCGGCATAGGGCAAGAAGGCGCTGTAGTTGGGTaGGCCCGCGTACGGTCCCGCCGCGGCATACATGCC | + |
|
Preference number: 6 (lower is better) Translates to: VRGIGQEGAVVG*ARVRSRRGIHA Trigger: GGCATGTATGCCGCGGCGGGACCGTACGCGGGCGCACCCAACTACAGCGCCTTCTTGCCCTATGCCGCGGAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS GCA 72 bp | GTGTACAGTCCGTGGCTGGGTAGAAAGGCCGGGTGTTaGAGGGGTGAGCCGCTGGGCGGCCCGTGTGCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: VYSPWLGRKAGC*RGEPLGGPCAL Trigger: CAGCGCACACGGGCCGCCCAGCGGCTCACCCCTGCAACACCCGGCCTTTCTACCCAGCCACGGACTGTACAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CAA 90 bp | CGAGCTGAGGCGGGAGGGGCTACGCGCGCCCTAGGAGCCTCCGCCTaGTCCTCTTCGTCTTCGTTGCTCTGGTCGCCATCACGCTCGTCG | + |
|
Preference number: 6 (lower is better) Translates to: RAEAGGATRALGASA*SSSSSLLWSPSRSS Trigger: CGACGAGCGTGATGGCGACCAGAGCAACGAAGACGAAGAGGACAAGGCGGAGGCTCCTAGGGCGCGCGTAGCCCCTCCCGCCTCAGCTCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS CAA 72 bp | TCGGGGCTAGTGGCTGTCTCAGCCAGAGACCAGATCTaGGGCTTGCTGTGCGGCGCGCCCTGCAGGCCGACC | + |
|
Preference number: 6 (lower is better) Translates to: SGLVAVSARDQI*GLLCGAPCRPT Trigger: GGTCGGCCTGCAGGGCGCGCCGCACAGCAAGCCCAAGATCTGGTCTCTGGCTGAGACAGCCACTAGCCCCGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS CCA 72 bp | GAGGCCTTCTCACCATGGAGCACCCCGGTGGCAACCTaGACTGGCGGCTGTGGAGGTGGTGGTGCTGTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: EAFSPWSTPVAT*TGGCGGGGAVR Trigger: CCTGACAGCACCACCACCTCCACAGCCGCCAGTCCAGGTTGCCACCGGGGTGCTCCATGGTGAGAAGGCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
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| CDS CCA 72 bp | CCCTCCTGCGGGGCCAGCGAGTTGTCGCGCACCGGCTaGAAGGGCGACTTTAACTGTTGTGGGGGCGAATCC | + |
|
Preference number: 6 (lower is better) Translates to: PSCGASELSRTG*KGDFNCCGGES Trigger: GGATTCGCCCCCACAACAGTTAAAGTCGCCCTTCCAGCCGGTGCGCGACAACTCGCTGGCCCCGCAGGAGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS TCA 72 bp | GGCGCCAGGACTCAGCAGGCGTGTGCTGCCGGGCTCTaGGACCTCCTTAACCAGGCCCAAGGGCGAATCTTG | + |
|
Preference number: 6 (lower is better) Translates to: GARTQQACAAGL*DLLNQAQGRIL Trigger: CAAGATTCGCCCTTGGGCCTGGTTAAGGAGGTCTCAGAGCCCGGCAGCACACGCCTGCTGAGTCCTGGCGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
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| CDS CCA 72 bp | AAAACTTGCCTATGTGACAGGTGTACAGTCCGTGGCTaGGTAGAAAGGCCGGGTGTTGCAGGGGTGAGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: KTCLCDRCTVRG*VERPGVAGVSR Trigger: GCGGCTCACCCCTGCAACACCCGGCCTTTCTACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS TCA 72 bp | TCAGTTCATACTGAGAGCCCATCTGCGAGAAGAGGCTaGGGTCCGCGGCATAGGGCAAGAAGGCGCTGTAGT | + |
|
Preference number: 6 (lower is better) Translates to: SVHTESPSARRG*GPRHRARRRCS Trigger: ACTACAGCGCCTTCTTGCCCTATGCCGCGGACCTCAGCCTCTTCTCGCAGATGGGCTCTCAGTATGAACTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
||
| CDS TCA 72 bp | GCGACTTTAACTGTTGTGGGGGCGAATCCGGTCTGGTaGCTAGGTCTCTCTCTGGAAGTGCAGGACTGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: ATLTVVGANPVW*LGLSLEVQDCC Trigger: GCAGCAGTCCTGCACTTCCAGAGAGAGACCTAGTCACCAGACCGGATTCGCCCCCACAACAGTTAAAGTCGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223379.2 |
||
| CDS CCA 72 bp | GCGAGCCCTGTGCTAGGAACGCGCCGTTGGTCCAGTTaGAAAACTTGCCTATGTGACAGGTGTACAGTCCGT | + |
|
Preference number: 6 (lower is better) Translates to: ASPVLGTRRWSS*KTCLCDRCTVR Trigger: ACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGCACAGGGCTCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
||
| CDS CAA 72 bp | CCGCGTGGCGTTCTTGGGCCGTCCGGGATCCCCGTATaGAAACTGACCATAGGGATAATAAGCAGGCGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: PRGVLGPSGIPV*KLTIGIISRRC Trigger: ACAACGCCTGCTTATTATCCCTATGGTCAGTTTCAATACGGGGATCCCGGACGGCCCAAGAACGCCACGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
||
| CDS TCA 72 bp | TCTGAGACCTCCTTAACCAGGCCCAAGGGCGAATCTTaGGACTTGAGTGTCTCAGCAGCCGACAATGGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SETSLTRPKGES*DLSVSAADNGE Trigger: CTCCCCATTGTCGGCTGCTGAGACACTCAAGTCTCAAGATTCGCCCTTGGGCCTGGTTAAGGAGGTCTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077337.9 ENSMUST00000223460.2 |
||
| CDS TCA 72 bp | AACGCGCCGTTGGTCCAGTTGGAAAACTTGCCTATGTaGCAGGTGTACAGTCCGTGGCTGGGTAGAAAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: NAPLVQLENLPM*QVYSPWLGRKA Trigger: GGCCTTTCTACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACTGGACCAACGGCGCGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS GCA 72 bp | GTGCTAGGAACGCGCCGTTGGTCCAGTTGGAAAACTTaGCTATGTGACAGGTGTACAGTCCGTGGCTGGGTA | + |
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Preference number: 6 (lower is better) Translates to: VLGTRRWSSWKT*LCDRCTVRGWV Trigger: TACCCAGCCACGGACTGTACACCTGTCACATAGGCAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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| CDS CCA 72 bp | TGTTCAGCAGCGAGCCCTGTGCTAGGAACGCGCCGTTaGTCCAGTTGGAAAACTTGCCTATGTGACAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: CSAASPVLGTRR*SSWKTCLCDRC Trigger: ACACCTGTCACATAGGCAAGTTTTCCAACTGGACCAACGGCGCGTTCCTAGCACAGGGCTCGCTGCTGAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077337.9 |
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