RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IRS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038894

Ensembl transcript IDs: ENSMUST00000040514.8

Found 307 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTaGTGTAGTCAGCAGATCAGTCCTACTGTCCCTGGGGGATTCAGC +
Preference number: 1 (lower is better)
Translates to: GDHSQHGGCVTSAST*CSQQISPTVPGGFS
Trigger: GCTGAATCCCCCAGGGACAGTAGGACTGATCTGCTGACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 90 bp GACTGGAGTCCACATCGACTTAACAGAGAGACGGAGGTCAGCATGTaGTCCTGGGGCAGAGTCGCCCTGTACCCTGCCAAACAATCCGGC +
Preference number: 1 (lower is better)
Translates to: DWSPHRLNRETEVSM*SWGRVALYPAKQSG
Trigger: GCCGGATTGTTTGGCAGGGTACAGGGCGACTCTGCCCCAGGATCACATGCTGACCTCCGTCTCTCTGTTAAGTCGATGTGGACTCCAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 90 bp CAAGTCCAATCCCACGGAGAATATTCAGTCCCACACCGGGCTCTGTaGGTAGGTAAACCATTCAGGTACCTGGACTGGAGTCCACATCGA +
Preference number: 1 (lower is better)
Translates to: QVQSHGEYSVPHRAL*VGKPFRYLDWSPHR
Trigger: TCGATGTGGACTCCAGTCCAGGTACCTGAATGGTTTACCTACGCACAGAGCCCGGTGTGGGACTGAATATTCTCCGTGGGATTGGACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 90 bp TCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTaGAGGACTTACACGAACATCTACAGAGAGAGGAGTCAACAAGCC +
Preference number: 1 (lower is better)
Translates to: SQPGGLWRGEKALAI*RTYTNIYRERSQQA
Trigger: GGCTTGTTGACTCCTCTCTCTGTAGATGTTCGTGTAAGTCCTTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 90 bp CTAAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTaGAATCTGAAGGACTTACACGAACATCTACAGAGAGAGGAGTCA +
Preference number: 1 (lower is better)
Translates to: LRVTARRLVEGRKGS*NLKDLHEHLQREES
Trigger: TGACTCCTCTCTCTGTAGATGTTCGTGTAAGTCCTTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 90 bp GAGGGATTAATCCACTTTGCCAAAATGAAAGTAACAAGAGAAAAATaGCAGCGATGGCCAGGACTTATGGAGGCCGGCGGCGGTGGAAAC +
Preference number: 1 (lower is better)
Translates to: EGLIHFAKMKVTREK*QRWPGLMEAGGGGN
Trigger: GTTTCCACCGCCGCCGGCCTCCATAAGTCCTGGCCATCGCTGTCATTTTTCTCTTGTTACTTTCATTTTGGCAAAGTGGATTAATCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 90 bp GGGGGATTTAGTGTATTCTCGATTTCTCTTCTTGTTCATGTCAGCTaGATCAGGGACATATGCCATCTGTGTCCTGTGGTGACCACTCCC +
Preference number: 1 (lower is better)
Translates to: GGFSVFSISLLVHVS*IRDICHLCPVVTTP
Trigger: GGGAGTGGTCACCACAGGACACAGATGGCATATGTCCCTGATGCAGCTGACATGAACAAGAAGAGAAATCGAGAATACACTAAATCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 90 bp TTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGTACAGTaGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATAGC +
Preference number: 1 (lower is better)
Translates to: LSSAASRDPYIQHVQ*KTTGRASLLLKHNS
Trigger: GCTATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 90 bp CAAACTAATCTACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTaGCCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGC +
Preference number: 1 (lower is better)
Translates to: QTNLLQFILVFSGIT*PLYTACTVEDNREG
Trigger: GCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGTAGATTAGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 90 bp ATGCACAACTGCAGCAAGGTAAACCTTGAGAATTGGCGCGGGGTGTaGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACAGCCTT +
Preference number: 1 (lower is better)
Translates to: MHNCSKVNLENWRGV*GDQFTFNFVLQYSL
Trigger: AAGGCTGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTACCTTGCTGCAGTTGTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 90 bp TACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTaGAACACAATAGCGAGAAATATATTTAACATCTTGGTATCCAGG +
Preference number: 1 (lower is better)
Translates to: YSMYSGRQQGGQVSC*NTIARNIFNILVSR
Trigger: CCTGGATACCAAGATGTTAAATATATTTCTCGCTATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 90 bp TTAAGATTAAGTCAAGCAAAATGTACAAAGACCCAATGTACAGCATaGAGTGTGGCGAACGTAACACTTACACATTTTGGTTCCATTCTG +
Preference number: 1 (lower is better)
Translates to: LRLSQAKCTKTQCTA*SVANVTLTHFGSIL
Trigger: CAGAATGGAACCAAAATGTGTAAGTGTTACGTTCGCCACACTTCATGCTGTACATTGGGTCTTTGTACATTTTGCTTGACTTAATCTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR TCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATGGGCCTCCAGCCCTGTaGCGGAGCAGCGAGGTGACG +
Preference number: 2 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNGPPAL*RSSEVT
Trigger: CGTCACCTCGCTGCTCCGTCACAGGGCTGGAGGCCC...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR GCA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTGCTGTAGTCAGCTACACAGCAAATaGAGCGCAGGTTCCTCATCA +
Preference number: 2 (lower is better)
Translates to: GDHSQHGGCVTSASTCCSQLHSK*SAGSSS
Trigger: TGATGAGGAACCTGCGCTGCATTTGCTGTGTAGCTG...ACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATACCATTCATAGTACAATaGCTGGAATGCCTCCCCTCC +
Preference number: 2 (lower is better)
Translates to: SSEVTAILPASSALLGDIPFIVQ*LECLPS
Trigger: GGAGGGGAGGCATTCCAGCCATTGTACTATGAATGG...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGGATGGCCAGGACTTATaGAGGCCGGCGGCGGTGGAA +
Preference number: 2 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLDGQDL*RPAAVE
Trigger: TTCCACCGCCGCCGGCCTCCATAAGTCCTGGCCATC...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 90 bp GCTAAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTaGCAATCTGAAGGACTTACACGAACATCTACAGAGAGAGGAGTC +
Preference number: 2 (lower is better)
Translates to: AKSHSQEACGGEKRL*QSEGLTRTSTERGV
Trigger: GACTCCTCTCTCTGTAGATGTTCGTGTAAGTCCTTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR TCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATAATCCGGCTTCACCCTaGACTGAGGTAGGACTGTGG +
Preference number: 2 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNNPASP*TEVGLW
Trigger: CCACAGTCCTACCTCAGTTCAGGGTGAAGCCGGATT...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CCA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTGCTGTAGTAGCATCTCCTTCGAATaGATTCAGAGTTTTGTTTTT +
Preference number: 2 (lower is better)
Translates to: GDHSQHGGCVTSASTCCSSISFE*IQSFVF
Trigger: AAAAACAAAACTCTGAATCCATTCGAAGGAGATGCT...ACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CCA 90 bp GACCACTTCCATGTATATTATAGCATCTCCTTGCATGCTGAGGGATTAATCCACATGAGGGCTGGTGTGTaGGGACAGCTGAGAGGCAGA +
Preference number: 2 (lower is better)
Translates to: DHFHVYYSISLHAEGLIHMRAGV*GQLRGR
Trigger: TCTGCCTCTCAGCTGTCCCCACACACCAGCCCTCAT...GTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR TCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACAGGCTTCACCCTGAACTaGGGTAGGACTGTGGTAGTT +
Preference number: 2 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTGFTLN*GRTVVV
Trigger: AACTACCACAGTCCTACCTCAGTTCAGGGTGAAGCC...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR TCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGTATGCCTGCTCTTCTTaGAATGTACAGGAGGAGGGG +
Preference number: 2 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMYACSS*NVQEEG
Trigger: CCCCTCCTCCTGTACATTTCAAGAAGAGCAGGCATA...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 90 bp TTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTaGTCTTGCAATACAGCCTTCTTCTACAAGCTCAGCAACGGAAGC +
Preference number: 2 (lower is better)
Translates to: LRIGAGCGEINLHST*SCNTAFFYKLSNGS
Trigger: GCTTCCGTTGCTGAGCTTGTAGAAGAAGGCTGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 90 bp AATGTACAGGAGGAGGGGGATTTAGTGTATTCTCGATTTCTCTTCTaGTTCATGTCAGCTGCATCAGGGACATATGCCATCTGTGTCCTG +
Preference number: 2 (lower is better)
Translates to: NVQEEGDLVYSRFLF*FMSAASGTYAICVL
Trigger: CAGGACACAGATGGCATATGTCCCTGATGCAGCTGACATGAACAAGAAGAGAAATCGAGAATACACTAAATCCCCCTCCTCCTGTACATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR TCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGACATTTCCAGAACACTaGCAACAGAACCAGGGTAGT +
Preference number: 2 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLTFPEH*QQNQGS
Trigger: ACTACCCTGGTTCTGTTGTCAGTGTTCTGGAAATGT...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR TCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACAGTAACAAGAGAAAAATaGCAGCGATGGCCAGGACTT +
Preference number: 2 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTVTREK*QRWPGL
Trigger: AAGTCCTGGCCATCGCTGTCATTTTTCTCTTGTTAC...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 90 bp TCAATACAGACTAAATACAGCAAACTAATCTACTCCAGTTTATTCTaGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGTACAG +
Preference number: 2 (lower is better)
Translates to: SIQTKYSKLIYSSLF*SSAASRDPYIQHVQ
Trigger: CTGTACATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGTAGATTAGTTTGCTGTATTTAGTCTGTATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 90 bp GTAAATACCAGATTTGACCACTTCCATGTATATTATAGCATCTCCTaGCATGCTGAGGGATTAATCCACTTTGCCAAAATGAAAGTAACA +
Preference number: 2 (lower is better)
Translates to: VNTRFDHFHVYYSIS*HAEGLIHFAKMKVT
Trigger: TGTTACTTTCATTTTGGCAAAGTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTCAAATCTGGTATTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 72 bp ACAGCGATGGCCAGGACTTATGGAGGCCGGCGGCGGTaGAAACGTCCAATCTCCCGGAGTGTACGCCATCAG +
Preference number: 3 (lower is better)
Translates to: TAMARTYGGRRR*KRPISRSVRHQ
Trigger: CTGATGGCGTACACTCCGGGAGATTGGACGTTTCCACCGCCGCCGGCCTCCATAAGTCCTGGCCATCGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp TCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTaGTGTAGTCAGCAGATCAGTCCTACTGTCCCTGGG +
Preference number: 3 (lower is better)
Translates to: SQHGGCVTSAST*CSQQISPTVPG
Trigger: CCCAGGGACAGTAGGACTGATCTGCTGACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 72 bp GCTGCATCAGGGACATATGCCATCTGTGTCCTGTGGTaGCCACTCCCAGCATGGAGGGTGTGTCACATCTGC +
Preference number: 3 (lower is better)
Translates to: AASGTYAICVLW*PLPAWRVCHIC
Trigger: GCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACCACAGGACACAGATGGCATATGTCCCTGATGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 72 bp GGAAACAAAATGCAACACAAACCGTGCGATGAGGGCTaGTGTGTGGGGACAGCTGAGAGGCAGACCTGCCTC +
Preference number: 3 (lower is better)
Translates to: GNKMQHKPCDEG*CVGTAERQTCL
Trigger: GAGGCAGGTCTGCCTCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp GAGGGCTGGTGTGTGGGGACAGCTGAGAGGCAGACCTaGCTCTTGGTTCCTTATCTAATTCACAGAAGTCTC +
Preference number: 3 (lower is better)
Translates to: EGWCVGTAERQT*LLVPYLIHRSL
Trigger: GAGACTTCTGTGAATTAGATAAGGAACCAAGAGGCAGGTCTGCCTCTCAGCTGTCCCCACACACCAGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp TCCCACGGAGAATATTCAGTCCCACACCGGGCTCTGTaGGTAGGTAAACCATTCAGGTACCTGGACTGGAGT +
Preference number: 3 (lower is better)
Translates to: SHGEYSVPHRAL*VGKPFRYLDWS
Trigger: ACTCCAGTCCAGGTACCTGAATGGTTTACCTACGCACAGAGCCCGGTGTGGGACTGAATATTCTCCGTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp TCAGTTCACAAAGGAAACAAAATGCAACACAAACCGTaGGATGAGGGCTGGTGTGTGGGGACAGCTGAGAGG +
Preference number: 3 (lower is better)
Translates to: SVHKGNKMQHKP*DEGWCVGTAER
Trigger: CCTCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTTTCCTTTGTGAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp TCCTACTGTCCCTGGGGGATTCAGCTACACAGCAAATaGAGCGCAGGTTCCTCATCAACACTGGAGAAGATT +
Preference number: 3 (lower is better)
Translates to: SYCPWGIQLHSK*SAGSSSTLEKI
Trigger: AATCTTCTCCAGTGTTGATGAGGAACCTGCGCTGCATTTGCTGTGTAGCTGAATCCCCCAGGGACAGTAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp TCTCTTCTTGTTCATGTCAGCTGCATCAGGGACATATaGCATCTGTGTCCTGTGGTGACCACTCCCAGCATG +
Preference number: 3 (lower is better)
Translates to: SLLVHVSCIRDI*HLCPVVTTPSM
Trigger: CATGCTGGGAGTGGTCACCACAGGACACAGATGGCATATGTCCCTGATGCAGCTGACATGAACAAGAAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CAA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTTCACAGCCAGGAGGCTaGTGGAGGGGAGAAAAGGCT +
Preference number: 3 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFSQPGG*WRGEKA
Trigger: AGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGA...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp TTTCCTCTTTTGCCATTCATAGTACAATGGCTGGAATaGCTCCCCTCCTGTTCAGGGCAACCTTGTTGGCCA +
Preference number: 3 (lower is better)
Translates to: FPLLPFIVQWLE*LPSCSGQPCWP
Trigger: TGGCCAACAAGGTTGCCCTGAACAGGAGGGGAGGCATTCCAGCCATTGTACTATGAATGGCAAAAGAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 72 bp GCGGCATCACGTGACCCCTATATACAGCATGTACAGTaGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAA +
Preference number: 3 (lower is better)
Translates to: AASRDPYIQHVQ*KTTGRASLLLK
Trigger: TTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGTCACGTGATGCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 72 bp GACAACAGAACCAGGGTAGTCTCTGTCAAGAACCGTTaGCAGGAAAGTGTAGGGGGAGAGATGTTTTTCCTC +
Preference number: 3 (lower is better)
Translates to: DNRTRVVSVKNR*QESVGGEMFFL
Trigger: GAGGAAAAACATCTCTCCCCCTACACTTTCCTGTCAACGGTTCTTGACAGAGACTACCCTGGTTCTGTTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CAA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGAGGCAGACCTGCCTCTaGGTTCCTTATCTAATTCAC +
Preference number: 3 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMRQTCL*VPYLIH
Trigger: GTGAATTAGATAAGGAACCAAGAGGCAGGTCTGCCT...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 72 bp AAGATGCACAACTGCAGCAAGGTAAACCTTGAGAATTaGCGCGGGGTGTGGGGAGATCAATTTACATTCAAC +
Preference number: 3 (lower is better)
Translates to: KMHNCSKVNLEN*RGVWGDQFTFN
Trigger: GTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTACCTTGCTGCAGTTGTGCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CAA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGACAAGCGTGCCTGTGTaGAGTTTTAGGTTTGAGGAT +
Preference number: 3 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLTSVPV*SFRFED
Trigger: ATCCTCAAACCTAAAACTCAACACAGGCACGCTTGT...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 72 bp CTACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTaGCCCCTATATACAGCATGTACAGTGGAAGACAAC +
Preference number: 3 (lower is better)
Translates to: LLQFILVFSGIT*PLYTACTVEDN
Trigger: GTTGTCTTCCACTGTACATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CCA 72 bp TGCAGCAAGGTAAACCTTGAGAATTGGCGCGGGGTGTaGGGAGATCAATTTACATTCAACTTTGTCTTGCAA +
Preference number: 3 (lower is better)
Translates to: CSKVNLENWRGV*GDQFTFNFVLQ
Trigger: TTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTACCTTGCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR GCA 72 bp GGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTaGAATACAGCCTTCTTCTACAAGCTCAGCAACGGA +
Preference number: 3 (lower is better)
Translates to: GCGEINLHSTLS*NTAFFYKLSNG
Trigger: TCCGTTGCTGAGCTTGTAGAAGAAGGCTGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR-3UTR CAA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTTATTATAGCATCTCCTaGCATGCTGAGGGATTAATC +
Preference number: 3 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFYYSIS*HAEGLI
Trigger: GATTAATCCCTCAGCATGCAAGGAGATGCTATAATA...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 72 bp AGTCAAGCAAAATGTACAAAGACCCAATGTACAGCATaGAGTGTGGCGAACGTAACACTTACACATTTTGGT +
Preference number: 3 (lower is better)
Translates to: SQAKCTKTQCTA*SVANVTLTHFG
Trigger: ACCAAAATGTGTAAGTGTTACGTTCGCCACACTTCATGCTGTACATTGGGTCTTTGTACATTTTGCTTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR TCA 72 bp TACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTaGAACACAATAGCGAGAAATATATTTAACATCTTG +
Preference number: 3 (lower is better)
Translates to: YSGRQQGGQVSC*NTIARNIFNIL
Trigger: CAAGATGTTAAATATATTTCTCGCTATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTGGTCAGGGGGCTGGCTaGCTTGAAGGAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSGQGAG*LEGKPP
Trigger: TGGAGGCTTTCCTTCAAGTCAGCCAGCCCCCTGACC...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTGCGATCAGGTACTTGTaGTTGGCGTCCGCGCGCTTG +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSAIRYL*LASARL
Trigger: CAAGCGCGCGGACGCCAAGCACAAGTACCTGATCGC...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTGCTGTAGTACTCAGGGGGCTCCCTaGCACCGACATCGGCCTGCC +
Preference number: 4 (lower is better)
Translates to: GDHSQHGGCVTSASTCCSTQGAP*HRHRPA
Trigger: GGCAGGCCGATGTCGGTGGCAGGGAGCCCCCTGAGT...ACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTACTCGCCAGGGCTCTTaGGCTCTGTGGGTAGAGGGT +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSTRQGS*ALWVEG
Trigger: ACCCTCTACCCACAGAGCCCAAGAGCCCTGGCGAGT...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTCAAAGCTCCAGTGCCTaGACCCCCACACACTCCGCT +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSQSSSA*TPTHSA
Trigger: AGCGGAGTGTGTGGGGGTCCAGGCACTGGAGCTTTG...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTGCAGGTAGCCGCACTTaGGCACGCTGTGGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSAGSRT*ARCGCC
Trigger: ACAACAACCACAGCGTGCGCAAGTGCGGCTACCTGC...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAGGCACGCTGATGGGATaGGTGGCTGACGACCCGGAC +
Preference number: 4 (lower is better)
Translates to: SSEVTAILPASSALLGDIGTLMG*VADDPD
Trigger: GTCCGGGTCGTCAGCCACGCATCCCATCAGCGTGCC...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTTGTTGTTGTTGTTATTaGGGTTCGGGCCGTCCCCGC +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSCCCCY*GSGRPR
Trigger: GCGGGGACGGCCCGAACCTCAATAACAACAACAACA...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTGCTGTAGTCAGCCCTCCTGCTCCTaGTCGTTCTCCGCCGCTACA +
Preference number: 4 (lower is better)
Translates to: GDHSQHGGCVTSASTCCSQPSCS*SFSAAT
Trigger: TGTAGCGGCGGAGAACGAGCAGGAGCAGGAGGGCTG...ACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAACCGCCAGGCTGTCAGTaGGCGAGCGGCGCACCAGGC +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEPPGCQ*ASGAPG
Trigger: GCCTGGTGCGCCGCTCGCGCACTGACAGCCTGGCGG...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAAGCCACCAAGGGCTGTaGCTGTCCTGGGGATGTGGG +
Preference number: 4 (lower is better)
Translates to: SSEVTAILPASSALLGDISHQGL*LSWGCG
Trigger: CCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCT...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTACGAAAAAGCGCTTGTaGCCGTGCTTCTGCTTGCGC +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSTKKRL*PCFCLR
Trigger: GCGCAAGCAGAAGCACGGCCACAAGCGCTTTTTCGT...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGATTGACTAGGTGGTGGTaGCGGCGCGCGCCCGGCACG +
Preference number: 4 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRLTRWW*RRAPGT
Trigger: CGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAA...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAACAGGCTGCCTGGGCTaGTGGCTGCAGGAGGTGAGT +
Preference number: 4 (lower is better)
Translates to: SSEVTAILPASSALLGDITGCLG*WLQEVS
Trigger: ACTCACCTCCTGCAGCCACCAGCCCAGGCAGCCTGT...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTCGCTTGTGGGGCTCATaGGCATGTAGTCATCGCTCT +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSRLWGS*ACSHRS
Trigger: AGAGCGATGACTACATGCCCATGAGCCCCACAAGCG...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTGCTCCCCGGGACCGGTaGCGGCCGAACGGCCCACCT +
Preference number: 4 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCAPRDR*RPNGPP
Trigger: AGGTGGGCCGTTCGGCCGTCACCGGTCCCGGGGAGC...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGAGCTGCCGGCTGTCGCTaGTGGTGCCTGGGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRAAGCR*WCLGFL
Trigger: CAGGAACCCCAGGCACCAGCAGCGACAGCCGGCAGC...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGAAGCCGTGCCCACTGCTaGAGGACAGGCTGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRSRAHC*RTGCLG
Trigger: GCCCAGGCAGCCTGTCCTCCAGCAGTGGGCACGGCT...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGCCACGGCCTAGCCTGTaGCACTGGGGGCACAGCCAC +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAEPRPSL*HWGHSH
Trigger: GTGGCTGTGCCCCCAGTGCCACAGGCTAGGCCGTGG...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGTCGGCGCGCCCGCCTTaGTCCTCCACTTCTTCTCGC +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAESARPP*SSTSSR
Trigger: GCGAGAAGAAGTGGAGGAGCAAGGCGGGCGCGCCGA...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGATGCTGGAGGACAGGCTaGCTGGGCTGGTGGCTGCAG +
Preference number: 4 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRCWRTG*LGWWLQ
Trigger: CTGCAGCCACCAGCCCAGGCAGCCTGTCCTCCAGCA...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGGTGGGGTCCCTGCAGTaGCTGCCTCGCTGGGGGACA +
Preference number: 4 (lower is better)
Translates to: PLLFRATLLANKSNIVPEVGSLQ*LPRWGT
Trigger: TGTCCCCCAGCGAGGCAGGCACTGCAGGGACCCCAC...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGGAGAGTGGAGAGCGCTaGCGGCTGTCGCTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAEESGER*RLSLLV
Trigger: CACCAGCAGCGACAGCCGGCAGCGCTCTCCACTCTC...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGAGGGGGCAAGGCCGCTaGCAAGCGTGGCTGCAGGAT +
Preference number: 4 (lower is better)
Translates to: PLLFRATLLANKSNIVPERGQGR*QAWLQD
Trigger: ATCCTGCAGCCACGCTTGGCAGCGGCCTTGCCCCCT...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GCAGCGTTGGTCGGAAACATGCCAAGCATCTCCTTCGAATGGATTCAGAGTTTTCGGGTGGGAGCCAGGTaGCAGCGGGTAGGAGCCCGA +
Preference number: 4 (lower is better)
Translates to: AALVGNMPSISFEWIQSFRVGAR*QRVGAR
Trigger: TCGGGCTCCTACCCGCTGCCACCTGGCTCCCACCCG...AAAACTCTGAATCCATTCGAAGGAGATGCTTGGCATGTTTCCGACCAACGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGGGCCGCTGCCAAGCGTaGCTGCAGGATCTGCTTGGG +
Preference number: 4 (lower is better)
Translates to: PLLFRATLLANKSNIVPEGRCQA*LQDLLG
Trigger: CCCAAGCAGATCCTGCAGCCACGCTTGGCAGCGGCC...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAGGCTCTTGGGCTCTGTaGGTAGAGGGTACTCTTGCA +
Preference number: 4 (lower is better)
Translates to: SSEVTAILPASSALLGDIGSWAL*VEGTLA
Trigger: TGCAAGAGTACCCTCTACCCACAGAGCCCAAGAGCC...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAAGAGAAGGCCATCCATaGAGCCTACTGTGTCCCCAC +
Preference number: 4 (lower is better)
Translates to: SSEVTAILPASSALLGDIREGHP*SLLCPH
Trigger: GTGGGGACACAGTAGGCTCCATGGATGGCCTTCTCT...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAAGGGCTGTGCCTGTCCTaGGGATGTGGGCGGCTCATC +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEGLCLS*GCGRLI
Trigger: GATGAGCCGCCCACATCCCCAGGACAGGCACAGCCC...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTACTCTTTCACGACTGTaGCTTCCTTCAAGTGATGGG +
Preference number: 4 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSTLSRL*LPSSDG
Trigger: CCCATCACTTGAAGGAAGCCACAGTCGTGAAAGAGT...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAAACTCGTCAAGGGACATaGAACCCGGGTCGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSETRQGT*NPGRWG
Trigger: CCCCCAGCGACCCGGGTTTCATGTCCCTTGACGAGT...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGTCACGAAGCCGATGGTaGGCGCAGACAGGCATAGGC +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAESRSRW*AQTGIG
Trigger: GCCTATGCCTGTCTGCGCGCACCATCGGCTTCGTGA...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAGTCAGGTTCTTGCTCTaGCCCAGTCCCTTAGGTTTC +
Preference number: 4 (lower is better)
Translates to: SSEVTAILPASSALLGDIVRFLL*PSPLGF
Trigger: GAAACCTAAGGGACTGGGCCAGAGCAAGAACCTGAC...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGAGGTTGACTAGGTGGTaGTGGCGGCGCGCGCCCGGC +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLRLTRW*WRRAPG
Trigger: GCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCT...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGTGGGGAGCTCTCCGCTaGGGAGCTGGCTTTGTAGCC +
Preference number: 4 (lower is better)
Translates to: PLLFRATLLANKSNIVPEWGALR*GAGFVA
Trigger: GGCTACAAAGCCAGCTCCCCAGCGGAGAGCTCCCCA...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGGTACCCACTGTCTTCTaGGGAGCTCTCCGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAEVPTVF*GALRWG
Trigger: TCCCCAGCGGAGAGCTCCCCAGAAGACAGTGGGTAC...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGCCAGCAGTGGGACCCTaGGAAGTGGCAGCTGATGCT +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAEPAVGP*EVAADA
Trigger: AGCATCAGCTGCCACTTCCCAGGGTCCCACTGCTGG...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGGACGACCCGGACGACTaGCTCTTGCTGCGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLDDPDD*LLLRGR
Trigger: CCGGCCTCGCAGCAAGAGTCAGTCGTCCGGGTCGTC...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAACGGACGACTGACTCTTaGTGCGAGGCCGGAACTCGA +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSERTTDS*CEAGTR
Trigger: TCGAGTTCCGGCCTCGCAGCAAGAGTCAGTCGTCCG...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGCCGAGCCGTGCCCACTaGTGGAGGACAGGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMPSRAH*WRTGCL
Trigger: CAGGCAGCCTGTCCTCCAGCAGTGGGCACGGCTCGG...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATGTCAGGTGGGGTCCCTaGAGTGCCTGCCTCGCTGGG +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNVRWGP*SACLAG
Trigger: CCCAGCGAGGCAGGCACTGCAGGGACCCCACCTGAC...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGGGCTGCCTGGGCTGGTaGCTGCAGGAGGTGAGTGCG +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMGCLGW*LQEVSA
Trigger: CGCACTCACCTCCTGCAGCCACCAGCCCAGGCAGCC...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTGCTGTAGTCTCATGAGCACATACTaGTCATTGTCTCCGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GDHSQHGGCVTSASTCCSLMSTY*SLSPLQ
Trigger: CTGCAGCGGAGACAATGACCAGTATGTGCTCATGAG...ACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATAAAGGTGCCAGCCCCTaGGGTGGCCTGGGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNKGASP*GGLGLQ
Trigger: CTGGAGCCCCAGGCCACCCCAGGGGCTGGCACCTTT...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCGGTACCAGCCCTCCTaGTCCTGCTCGTTCTCCGCC +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLRYQPS*SCSFSA
Trigger: GGCGGAGAACGAGCAGGAGCAGGAGGGCTGGTACCG...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp GCAGCGTTGGTCGGAAACATGCCAAGCATCTCCTTCGAATGGATTCAGAGTTTTACCGAGTCGTCGGCTTaGATCCACAGCTCCCCGGGA +
Preference number: 4 (lower is better)
Translates to: AALVGNMPSISFEWIQSFTESSA*IHSSPG
Trigger: TCCCGGGGAGCTGTGGATGCAAGCCGACGACTCGGT...AAAACTCTGAATCCATTCGAAGGAGATGCTTGGCATGTTTCCGACCAACGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGACGACTGACTCTTGCTaGGAGGCCGGAACTCGAAGA +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAETTDSC*EAGTRR
Trigger: TCTTCGAGTTCCGGCCTCGCAGCAAGAGTCAGTCGT...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGCGATGCTTGCATAGGTaGTGGCAGAGGGCAAAGCTC +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAERCLHR*WQRAKL
Trigger: GAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCG...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAAAAGAAGCTGTCCGAGTaGCCGCAGCGGCGAATGTTC +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEKKLSE*PQRRMF
Trigger: GAACATTCGCCGCTGCGGCCACTCGGACAGCTTCTT...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGGTAGGTTGACTAGGTaGTGGTGGCGGCGCGCGCCC +
Preference number: 4 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFGRLTR*WWRRAP
Trigger: GGGCGCGCGCCGCCACCACCACCTAGTCAACCTACC...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACAGGAGGACAGGCTGCCTaGGCTGGTGGCTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: YTACTVEDNREGKSLVETGGQAA*AGGCRR
Trigger: CCTCCTGCAGCCACCAGCCCAGGCAGCCTGTCCTCC...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp TCCCGGAGTGTACGCCATCAGCCCGTCAGTTCACAAAGGAAACAAAATGCAACATTGGGGGTGATGCAGTaGATGAGGCAGGTGCGGGTG +
Preference number: 4 (lower is better)
Translates to: SRSVRHQPVSSQRKQNATLGVMQ*MRQVRV
Trigger: CACCCGCACCTGCCTCATCCACTGCATCACCCCCAA...TGTTGCATTTTGTTTCCTTTGTGAACTGACGGGCTGATGGCGTACACTCCGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATCCCCACTGCCATCTCTaGCTGGCGGGGTCTCCGCTA +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNPHCHL*LAGSPL
Trigger: TAGCGGAGACCCCGCCAGCCAGAGATGGCAGTGGGG...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAATGGCACTCGGCCTCATaGAGGAAGGCACTGCTGAGT +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEWHSAS*RKALLS
Trigger: ACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTGCCA...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGCATATAGTCAGAGAGTaGAGAGCGCTGCCGGCTGTC +
Preference number: 4 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAEHIVRE*RALPAV
Trigger: GACAGCCGGCAGCGCTCTCCACTCTCTGACTATATG...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAAAGGTCTCTCTGCGCATaGGAGAACTGCTGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSERSLCA*ENCCLQ
Trigger: CTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCT...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTCCACGCAAAGCTGCTaGGAAGTCAGGTGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCSTQSC*EVRWGP
Trigger: GGGACCCCACCTGACTTCTCAGCAGCTTTGCGTGGA...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAATGGTGGGTATGGGGATaGAGCCTCTGGAGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEWWVWG*SLWREK
Trigger: CTTCTCTCTCCAGAGGCTTCATCCCCATACCCACCA...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCTGGGAAGTGGCAGCTaGTGCTGGAGGCAGGCGGTA +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLLGSGS*CWRQAV
Trigger: TACCGCCTGCCTCCAGCATCAGCTGCCACTTCCCAG...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGAGTGGCTTCCTTCAAGTaGTGGGACAGGAAGTCGATG +
Preference number: 4 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRVASFK*WDRKSM
Trigger: CATCGACTTCCTGTCCCATCACTTGAAGGAAGCCAC...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATGCTGCAGGAGGTGAGTaGGCCACGGGCATGGACATG +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNAAGGE*ATGMDM
Trigger: CATGTCCATGCCCGTGGCGCACTCACCTCCTGCAGC...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGGGCTGTCGCTGCTGGTaGCTGGGGTTCCTGAACCCA +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMGCRCW*LGFLNP
Trigger: TGGGTTCAGGAACCCCAGGCACCAGCAGCGACAGCC...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATCGCACCAGGCCGGTCTaGCTAGGGGGTAGGTTGACT +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNRTRPV*LGGRLT
Trigger: AGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCG...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp TCCCGGAGTGTACGCCATCAGCCCGTCAGTTCACAAAGGAAACAAAATGCAACAGGTTGTAGGCCACTTTaGGAGAGGACGCAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SRSVRHQPVSSQRKQNATGCRPL*ERTQGR
Trigger: CCTTCCCTGCGTCCTCTCCCAAAGTGGCCTACAACC...TGTTGCATTTTGTTTCCTTTGTGAACTGACGGGCTGATGGCGTACACTCCGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGGCCACCTCCGTTTACTaGGAAGGTCCTGCCCACCCC +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLATSVY*EGPAHP
Trigger: GGGGTGGGCAGGACCTTCCCAGTAAACGGAGGTGGC...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTGGAAGTGGAAGGACGTaGGGGCAGTGGTGGGTATGG +
Preference number: 4 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCGSGRT*GQWWVW
Trigger: CCATACCCACCACTGCCCCCACGTCCTTCCACTTCC...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGGGACCCTGGGAAGTaGCAGCTGATGCTGGAGGCA +
Preference number: 4 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCWDPGK*QLMLEA
Trigger: TGCCTCCAGCATCAGCTGCCACTTCCCAGGGTCCCA...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAAAAAGGATGGGGACACTaGGGTGACGGTGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEKGWGH*GDGGGR
Trigger: TCTACCACCACCGTCACCCCAGTGTCCCCATCCTTT...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGATGGCGCTTGGAATTGTaGGCAAAGGATGGGGACACT +
Preference number: 4 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRWRLEL*AKDGDT
Trigger: AGTGTCCCCATCCTTTGCCCACAATTCCAAGCGCCA...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGTGCTCCTGTGGCTACTaGAGGCTCTCAGGTCGCCAG +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMCSCGY*RLSGRQ
Trigger: CTGGCGACCTGAGAGCCTTCAGTAGCCACAGGAGCA...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACAGACCAAGTCGGTGAGTaGGCGGTACCAGCCCTCCTG +
Preference number: 4 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTDQVGE*AVPALL
Trigger: CAGGAGGGCTGGTACCGCGCACTCACCGACTTGGTC...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAACGAATGTTCATAAGCTaGAGCGTCACCGACGGCTGT +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSERMFIS*SVTDGC
Trigger: ACAGCCGTCGGTGACGCTGCAGCTTATGAACATTCG...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACATTGCAGGGCTCCCCCTaGCGGCGCCAGAGTCACTTT +
Preference number: 4 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTLQGSP*RRQSHF
Trigger: AAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAA...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATACCACTCCTAAGGGCTaGCCCAGGGGTCATGGGCAT +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNTTPKG*PRGHGH
Trigger: ATGCCCATGACCCCTGGGGCAGCCCTTAGGAGTGGT...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp TCCCGGAGTGTACGCCATCAGCCCGTCAGTTCACAAAGGAAACAAAATGCAACAATGCTGGGAAGGGTCTaGAGTCCCTCTAGCGATAGG +
Preference number: 4 (lower is better)
Translates to: SRSVRHQPVSSQRKQNATMLGRV*SPSSDR
Trigger: CCTATCGCTAGAGGGACTGCAGACCCTTCCCAGCAT...TGTTGCATTTTGTTTCCTTTGTGAACTGACGGGCTGATGGCGTACACTCCGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGCCACGGAGGTCTCTCTaGGCATGGGAGAACTGCTGC +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMPRRSL*AWENCC
Trigger: GCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGG...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAACGAAGTACTCGTCCTTaGTGTAGAGGGCGATCAGGT +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSERSTRP*CRGRSG
Trigger: ACCTGATCGCCCTCTACACCAAGGACGAGTACTTCG...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GCAGCGTTGGTCGGAAACATGCCAAGCATCTCCTTCGAATGGATTCAGAGTTTTGCTTCACGAAGCCGATaGTGCGCGCAGACAGGCATA +
Preference number: 4 (lower is better)
Translates to: AALVGNMPSISFEWIQSFASRSR*CAQTGI
Trigger: TATGCCTGTCTGCGCGCACCATCGGCTTCGTGAAGC...AAAACTCTGAATCCATTCGAAGGAGATGCTTGGCATGTTTCCGACCAACGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTCCACGGGCATGGACATaGAGCGGCTGTGTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFPRAWT*SGCVAG
Trigger: CCCTGCAACACAGCCGCTCCATGTCCATGCCCGTGG...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GACCACTTCCATGTATATTATAGCATCTCCTTGCATGCTGAGGGATTAATCCACGCCGGCTGTCGCTGCTaGTGCCTGGGGTTCCTGAAC +
Preference number: 4 (lower is better)
Translates to: DHFHVYYSISLHAEGLIHAGCRC*CLGFLN
Trigger: GTTCAGGAACCCCAGGCACCAGCAGCGACAGCCGGC...GTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACACCTGTCCTGGGGATGTaGGCGGCTCATCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTPVLGM*AAHHLL
Trigger: GAGGAGGTGATGAGCCGCCCACATCCCCAGGACAGG...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGGTCTCATGGATGTTCTaGGCCACCACCGAGTCGTCG +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLVSWMF*ATTESS
Trigger: CGACGACTCGGTGGTGGCGCAGAACATCCATGAGAC...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTGAGGGTACTCTTGCATaGTGGGAAGGGTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCEGTLA*WEGSAV
Trigger: GACTGCAGACCCTTCCCAGCATGCAAGAGTACCCTC...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATGCAGGTGGCAGAGGCTaGTGTAAGGAGGAAGGGGAA +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNAGGRG*CKEEGE
Trigger: TTCCCCTTCCTCCTTACAGCAGCCTCTGCCACCTGC...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATAGGTTGTGGCGGGGTTaGAGCCACACCAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNRLWRG*SHTKGH
Trigger: ATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCT...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGTGCGCATGGGAGAACTaGTGCCTCCAGGACAGCCAA +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMCAWEN*CLQDSQ
Trigger: TTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCA...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTAGTGCGCCACGGGCATaGACATGGAGCGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFSAPRA*TWSGCV
Trigger: AACACAGCCGCTCCATGTCCATGCCCGTGGCGCACT...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAACCGAATTGTGGCGCTTaGAATTGTGGGCAAAGGATG +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSEPNCGA*NCGQRM
Trigger: CATCCTTTGCCCACAATTCCAAGCGCCACAATTCGG...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTCGTCCGCGCGCTTGTTaGTGTTCAGACAGCAGTCGA +
Preference number: 4 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFRPRAC*CSDSSR
Trigger: TCGACTGCTGTCTGAACATCAACAAGCGCGCGGACG...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGGAGGAAGGCACTGCTaGGTGATGAGGCTGGGTATG +
Preference number: 4 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFGGRHC*VMRLGM
Trigger: CATACCCAGCCTCATCACTCAGCAGTGCCTTCCTCC...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp GACCACTTCCATGTATATTATAGCATCTCCTTGCATGCTGAGGGATTAATCCACTTACTGGGAAGGTCCTaGCCACCCCTGAAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: DHFHVYYSISLHAEGLIHLLGRS*PPLKGV
Trigger: CACCCCCTTCAGGGGTGGGCAGGACCTTCCCAGTAA...GTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp CTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGGGTAGAGGGTACTCTTaGATGCTGGGAAGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: LENWRGVWGDQFTFNFVLGRGYS*MLGRVC
Trigger: GCAGACCCTTCCCAGCATGCAAGAGTACCCTCTACC...CAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp GACCACTTCCATGTATATTATAGCATCTCCTTGCATGCTGAGGGATTAATCCACTCTCCGCTGGGGAGCTaGCTTTGTAGCCACCTCCGT +
Preference number: 4 (lower is better)
Translates to: DHFHVYYSISLHAEGLIHSPLGS*LCSHLR
Trigger: ACGGAGGTGGCTACAAAGCCAGCTCCCCAGCGGAGA...GTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACACACTCGGGCACCTTCTaGCTTTGGAGGTGCCACGAT +
Preference number: 4 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTHSGTF*LWRCHD
Trigger: ATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTG...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 72 bp ATGGCTGGAATGCCTCCCCTCCTGTTCAGGGCAACCTaGTTGGCCAACAAAAGTAACATTGTGCCAGAGATA +
Preference number: 4 (lower is better)
Translates to: MAGMPPLLFRAT*LANKSNIVPEI
Trigger: TATCTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGGAGGCATTCCAGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACAACGGCTGTTCGCAATTaGGCTTCACGAAGCCGATGG +
Preference number: 4 (lower is better)
Translates to: YTACTVEDNREGKSLVETTAVRN*ASRSRW
Trigger: CCATCGGCTTCGTGAAGCTCAATTGCGAACAGCCGT...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGCTGCTGGAACTCTTGTaGGAACCAATCTCAATGTCT +
Preference number: 4 (lower is better)
Translates to: PLLFRATLLANKSNIVPELLELL*EPISMS
Trigger: AGACATTGAGATTGGTTCTCACAAGAGTTCCAGCAG...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGCCACAGGGGAGCTCATaGGCACATACTGGTCATTGT +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMPQGSS*AHTGHC
Trigger: ACAATGACCAGTATGTGCTCATGAGCTCCCCTGTGG...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAATCAGGGGTCTATCCATaGTCATGTACCCATAGAGTT +
Preference number: 4 (lower is better)
Translates to: KSHSQEACGGEKRLLQSESGVYP*SCTHRV
Trigger: AACTCTATGGGTACATGAGCATGGATAGACCCCTGA...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGCATGTAGCCATCATCTaGCCCCAGGTTACTGCTGGA +
Preference number: 4 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMHVAII*PQVTAG
Trigger: TCCAGCAGTAACCTGGGGGCAGATGATGGCTACATG...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGTAGTCATCGCTCTTaGAGCTATTGGGACCACCAC +
Preference number: 4 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCCSHRS*SYWDHH
Trigger: GTGGTGGTCCCAATAGCTGCAAGAGCGATGACTACA...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACAATTGTGGGCAAAGGATaGGGACACTGGGGTGACGGT +
Preference number: 4 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTIVGKG*GHWGDG
Trigger: ACCGTCACCCCAGTGTCCCCATCCTTTGCCCACAAT...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CCA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACATGCTTGCATAGGTGCTaGCAGAGGGCAAAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: YTACTVEDNREGKSLVETCLHRC*QRAKLQ
Trigger: CTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCA...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 72 bp GCTGGAATGCCTCCCCTCCTGTTCAGGGCAACCTTGTaGGCCAACAAAAGTAACATTGTGCCAGAGATAATA +
Preference number: 4 (lower is better)
Translates to: AGMPPLLFRATL*ANKSNIVPEII
Trigger: TATTATCTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGGAGGCATTCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 72 bp GGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTaGTCTTGCAATACAGCCTTCTTCTACAAGCTCAGC +
Preference number: 4 (lower is better)
Translates to: GAGCGEINLHST*SCNTAFFYKLS
Trigger: GCTGAGCTTGTAGAAGAAGGCTGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACACCAAAGTCAATGTTaGTGTACTCGCCAGGGCTCT +
Preference number: 4 (lower is better)
Translates to: YTACTVEDNREGKSLVETHQSQC*CTRQGS
Trigger: AGAGCCCTGGCGAGTACATCAACATTGACTTTGGTG...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 72 bp ACAGGAAAGTGTAGGGGGAGAGATGTTTTTCCTCTTTaGCCATTCATAGTACAATGGCTGGAATGCCTCCCC +
Preference number: 4 (lower is better)
Translates to: TGKCRGRDVFPL*PFIVQWLECLP
Trigger: GGGGAGGCATTCCAGCCATTGTACTATGAATGGCAAAAGAGGAAAAACATCTCTCCCCCTACACTTTCCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR TCA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACAAGAAGGTGGCCCTCATaGGAGTGTATTCATCTAGAG +
Preference number: 4 (lower is better)
Translates to: YTACTVEDNREGKSLVETRRWPS*ECIHLE
Trigger: CTCTAGATGAATACACTCTCATGAGGGCCACCTTCT...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR GCA 90 bp GACCACTTCCATGTATATTATAGCATCTCCTTGCATGCTGAGGGATTAATCCACAGACAGACGGGTACCTaGCTCACCAAAGTCAATGTT +
Preference number: 4 (lower is better)
Translates to: DHFHVYYSISLHAEGLIHRQTGT*LTKVNV
Trigger: AACATTGACTTTGGTGAGGCAGGTACCCGTCTGTCT...GTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 72 bp ACTAAATACAGCAAACTAATCTACTCCAGTTTATTCTaGTCTTCAGCGGCATCACGTGACCCCTATATACAG +
Preference number: 4 (lower is better)
Translates to: TKYSKLIYSSLF*SSAASRDPYIQ
Trigger: CTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGTAGATTAGTTTGCTGTATTTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
3UTR CAA 72 bp AGATTTGACCACTTCCATGTATATTATAGCATCTCCTaGCATGCTGAGGGATTAATCCACTTTGCCAAAATG +
Preference number: 4 (lower is better)
Translates to: RFDHFHVYYSIS*HAEGLIHFAKM
Trigger: CATTTTGGCAAAGTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTCAAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp AGAGTCACTTTGCTCGGGCGGCCTCCGCAGCCGGCGCTCAGGGTGTaGGAGCGGCTAAGGGGCGCGCGCACCGGCCCGGGACTCAGGGGG +
Preference number: 5 (lower is better)
Translates to: RVTLLGRPPQPALRV*ERLRGARTGPGLRG
Trigger: CCCCCTGAGTCCCGGGCCGGTGCGCGCGCCCCTTAGCCGCTCGCACACCCTGAGCGCCGGCTGCGGAGGCCGCCCGAGCAAAGTGACTCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GTGGCCGCCAGGCTGTCAGTGCGCGAGCGGCGCACCAGGCCGGTCTaGCTAGGGGGTAGGTTGACTAGGTGGTGGTGGCGGCGCGCGCCC +
Preference number: 5 (lower is better)
Translates to: VAARLSVRERRTRPV*LGGRLTRWWWRRAP
Trigger: GGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCGCCGCTCGCGCACTGACAGCCTGGCGGCCAC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp CGCCACGGGCATGGACATGGAGCGGCTGTGTTGCAGGGCTCCCCCTaGCGGCGCCAGAGTCACTTTGCTCGGGCGGCCTCCGCAGCCGGC +
Preference number: 5 (lower is better)
Translates to: RHGHGHGAAVLQGSP*RRQSHFARAASAAG
Trigger: GCCGGCTGCGGAGGCCGCCCGAGCAAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAACACAGCCGCTCCATGTCCATGCCCGTGGCG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp GGGTGTCACGAGCCCGTAGTTGTCATCGCAGCCAGCGGCGCCCGCTaGGCCGCCCAGGACGCCCGGGAGAGAGGCGCTGCAAGAGCCTCC +
Preference number: 5 (lower is better)
Translates to: GCHEPVVVIAASGAR*AAQDARERGAARAS
Trigger: GGAGGCTCTTGCAGCGCCTCTCTCCCGGGCGTCCTGGGCGGCTCAGCGGGCGCCGCTGGCTGCGATGACAACTACGGGCTCGTGACACCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CGGCGCACCAGGCCGGTCTGGCTAGGGGGTAGGTTGACTAGGTGGTaGTGGCGGCGCGCGCCCGGCACGCTGATGGGATGCGTGGCTGAC +
Preference number: 5 (lower is better)
Translates to: RRTRPVWLGGRLTRW*WRRAPGTLMGCVAD
Trigger: GTCAGCCACGCATCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCGCCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GAGCGGCGCACCAGGCCGGTCTGGCTAGGGGGTAGGTTGACTAGGTaGTGGTGGCGGCGCGCGCCCGGCACGCTGATGGGATGCGTGGCT +
Preference number: 5 (lower is better)
Translates to: ERRTRPVWLGGRLTR*WWRRAPGTLMGCVA
Trigger: AGCCACGCATCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCGCCGCTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GGCTGCCTGGGCTGGTGGCTGCAGGAGGTGAGTGCGCCACGGGCATaGACATGGAGCGGCTGTGTTGCAGGGCTCCCCCTGCCGGCGCCA +
Preference number: 5 (lower is better)
Translates to: GCLGWWLQEVSAPRA*TWSGCVAGLPLPAP
Trigger: TGGCGCCGGCAGGGGGAGCCCTGCAACACAGCCGCTCCATGTCCATGCCCGTGGCGCACTCACCTCCTGCAGCCACCAGCCCAGGCAGCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CGCACCAGGCCGGTCTGGCTAGGGGGTAGGTTGACTAGGTGGTGGTaGCGGCGCGCGCCCGGCACGCTGATGGGATGCGTGGCTGACGAC +
Preference number: 5 (lower is better)
Translates to: RTRPVWLGGRLTRWW*RRAPGTLMGCVADD
Trigger: GTCGTCAGCCACGCATCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp GCAGGAGGTGAGTGCGCCACGGGCATGGACATGGAGCGGCTGTGTTaGAGGGCTCCCCCTGCCGGCGCCAGAGTCACTTTGCTCGGGCGG +
Preference number: 5 (lower is better)
Translates to: AGGECATGMDMERLC*RAPPAGARVTLLGR
Trigger: CCGCCCGAGCAAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAACACAGCCGCTCCATGTCCATGCCCGTGGCGCACTCACCTCCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp CCACGGCCTAGCCTGTGGCACTGGGGGCACAGCCACCAAGGGCTGTaGCTGTCCTGGGGATGTGGGCGGCTCATCACCTCCTCCCAGGGT +
Preference number: 5 (lower is better)
Translates to: PRPSLWHWGHSHQGL*LSWGCGRLITSSQG
Trigger: ACCCTGGGAGGAGGTGATGAGCCGCCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTGCCACAGGCTAGGCCGTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp AGCCTGTGGCACTGGGGGCACAGCCACCAAGGGCTGTGCCTGTCCTaGGGATGTGGGCGGCTCATCACCTCCTCCCAGGGTACTGCTGCC +
Preference number: 5 (lower is better)
Translates to: SLWHWGHSHQGLCLS*GCGRLITSSQGTAA
Trigger: GGCAGCAGTACCCTGGGAGGAGGTGATGAGCCGCCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTGCCACAGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp TGCTGGCACGGCTGCTCCGGAAGGGGGCAAGGCCGCTGCCAAGCGTaGCTGCAGGATCTGCTTGGGAGCAGACACGCTTGTGGGGCTCAT +
Preference number: 5 (lower is better)
Translates to: CWHGCSGRGQGRCQA*LQDLLGSRHACGAH
Trigger: ATGAGCCCCACAAGCGTGTCTGCTCCCAAGCAGATCCTGCAGCCACGCTTGGCAGCGGCCTTGCCCCCTTCCGGAGCAGCCGTGCCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CTGCCCGACATCGCTGGCCCAGGAAGCCCTCAGGGCGGCCACCGATaGCACTCGGCCTCATGGAGGAAGGCACTGCTGAGTGATGAGGCT +
Preference number: 5 (lower is better)
Translates to: LPDIAGPGSPQGGHR*HSASWRKALLSDEA
Trigger: AGCCTCATCACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTGCCATCGGTGGCCGCCCTGAGGGCTTCCTGGGCCAGCGATGTCGGGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GCACTGGGGGCACAGCCACCAAGGGCTGTGCCTGTCCTGGGGATGTaGGCGGCTCATCACCTCCTCCCAGGGTACTGCTGCCTTCACTGC +
Preference number: 5 (lower is better)
Translates to: ALGAQPPRAVPVLGM*AAHHLLPGYCCLHC
Trigger: GCAGTGAAGGCAGCAGTACCCTGGGAGGAGGTGATGAGCCGCCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp GCCCGGGATGCCTTTGAGGCCTTCACTGCCTCCACGCAAAGCTGCTaGGAAGTCAGGTGGGGTCCCTGCAGTGCCTGCCTCGCTGGGGGA +
Preference number: 5 (lower is better)
Translates to: ARDAFEAFTASTQSC*EVRWGPCSACLAGG
Trigger: TCCCCCAGCGAGGCAGGCACTGCAGGGACCCCACCTGACTTCTCAGCAGCTTTGCGTGGAGGCAGTGAAGGCCTCAAAGGCATCCCGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp CGGCCTTCGCTGACCAAGTCGGTGAGTGCGCGGTACCAGCCCTCCTaGTCCTGCTCGTTCTCCGCCGCTACAGCGAAGTACTCGTCCTTG +
Preference number: 5 (lower is better)
Translates to: RPSLTKSVSARYQPS*SCSFSAATAKYSSL
Trigger: CAAGGACGAGTACTTCGCTGTAGCGGCGGAGAACGAGCAGGAGCAGGAGGGCTGGTACCGCGCACTCACCGACTTGGTCAGCGAAGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GGCCCAGGAAGCCCTCAGGGCGGCCACCGATGGCACTCGGCCTCATaGAGGAAGGCACTGCTGAGTGATGAGGCTGGGTATGACTACCAC +
Preference number: 5 (lower is better)
Translates to: GPGSPQGGHRWHSAS*RKALLSDEAGYDYH
Trigger: GTGGTAGTCATACCCAGCCTCATCACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTGCCATCGGTGGCCGCCCTGAGGGCTTCCTGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTCAGGCTCGGAGGACATaGAGGAGCCAGCAGTGGGAC +
Preference number: 5 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSQARRT*RSQQWD
Trigger: GTCCCACTGCTGGCTCCTCAATGTCCTCCGAGCCTG...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGGGGCTGGCTGACTaGAAGGAAAGCCTCCACCCC +
Preference number: 5 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSRGLAD*KESLHP
Trigger: GGGGTGGAGGCTTTCCTTCAAGTCAGCCAGCCCCCT...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp GCCCGATGTGGGACTGGCCACTCGGGCACCTTCTGGCTTTGGAGGTaGCACGATAGGTTGTGGCGGGGTTGCAGCCACACCAAAGGCCAT +
Preference number: 5 (lower is better)
Translates to: ARCGTGHSGTFWLWR*HDRLWRGCSHTKGH
Trigger: ATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCCAGTCCCACATCGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp GGCCGTTCTGGAAACCCACGGAGGTCTCTCTGCGCATGGGAGAACTaGTGCCTCCAGGACAGCCAATCAAAGCTCCGGGCTGACCGGGGT +
Preference number: 5 (lower is better)
Translates to: GRSGNPRRSLCAWEN*CLQDSQSKLRADRG
Trigger: ACCCCGGTCAGCCCGGAGCTTTGATTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGGGTTTCCAGAACGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CTGGCTGGCGGGGTCTCCGCTATTGACTCGGGTGTGTTGCTCCTGTaGCTACTGAAGGCTCTCAGGTCGCCAGGGCTGGAGCCATACTCG +
Preference number: 5 (lower is better)
Translates to: LAGGVSAIDSGVLLL*LLKALRSPGLEPYS
Trigger: CGAGTATGGCTCCAGCCCTGGCGACCTGAGAGCCTTCAGTAGCCACAGGAGCAACACACCCGAGTCAATAGCGGAGACCCCGCCAGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp GCGGGGTCTCCGCTATTGACTCGGGTGTGTTGCTCCTGTGGCTACTaGAGGCTCTCAGGTCGCCAGGGCTGGAGCCATACTCGTCAAGGG +
Preference number: 5 (lower is better)
Translates to: AGSPLLTRVCCSCGY*RLSGRQGWSHTRQG
Trigger: CCCTTGACGAGTATGGCTCCAGCCCTGGCGACCTGAGAGCCTTCAGTAGCCACAGGAGCAACACACCCGAGTCAATAGCGGAGACCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp AGGGCGGCCACCGATGGCACTCGGCCTCATGGAGGAAGGCACTGCTaGGTGATGAGGCTGGGTATGACTACCACCAGCTGCCCCAAAGGT +
Preference number: 5 (lower is better)
Translates to: RAATDGTRPHGGRHC*VMRLGMTTTSCPKG
Trigger: ACCTTTGGGGCAGCTGGTGGTAGTCATACCCAGCCTCATCACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTGCCATCGGTGGCCGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp CGTTCTGGAAACCCACGGAGGTCTCTCTGCGCATGGGAGAACTGCTaGCTCCAGGACAGCCAATCAAAGCTCCGGGCTGACCGGGGTTCC +
Preference number: 5 (lower is better)
Translates to: RSGNPRRSLCAWENC*LQDSQSKLRADRGS
Trigger: GGAACCCCGGTCAGCCCGGAGCTTTGATTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGGGTTTCCAGAACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CCTGCTCCTGCTCGTTCTCCGCCGCTACAGCGAAGTACTCGTCCTTaGTGTAGAGGGCGATCAGGTACTTGTGCTTGGCGTCCGCGCGCT +
Preference number: 5 (lower is better)
Translates to: PAPARSPPLQRSTRP*CRGRSGTCAWRPRA
Trigger: AGCGCGCGGACGCCAAGCACAAGTACCTGATCGCCCTCTACACCAAGGACGAGTACTTCGCTGTAGCGGCGGAGAACGAGCAGGAGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATAAGGGCGATCAGGTACTaGTGCTTGGCGTCCGCGCGC +
Preference number: 5 (lower is better)
Translates to: SSEVTAILPASSALLGDIRAIRY*CLASAR
Trigger: GCGCGCGGACGCCAAGCACAAGTACCTGATCGCCCT...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp TGTAGAGGGCGATCAGGTACTTGTGCTTGGCGTCCGCGCGCTTGTTaGTGTTCAGACAGCAGTCGAGCGCGATCACTCGCTTCGGCGCGC +
Preference number: 5 (lower is better)
Translates to: CRGRSGTCAWRPRAC*CSDSSRARSLASAR
Trigger: GCGCGCCGAAGCGAGTGATCGCGCTCGACTGCTGTCTGAACATCAACAAGCGCGCGGACGCCAAGCACAAGTACCTGATCGCCCTCTACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp GCGCCAAGGACCCCTGCTCGCCTCTCACATCGATGGCGATATAGTTaGGGCCGTTCTGGAAACCCACGGAGGTCTCTCTGCGCATGGGAG +
Preference number: 5 (lower is better)
Translates to: APRTPARLSHRWRYS*GRSGNPRRSLCAWE
Trigger: CTCCCATGCGCAGAGAGACCTCCGTGGGTTTCCAGAACGGCCTCAACTATATCGCCATCGATGTGAGAGGCGAGCAGGGGTCCTTGGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp TTCGCATGTACCCACTGTCTTCTGGGGAGCTCTCCGCTGGGGAGCTaGCTTTGTAGCCACCTCCGTTTACTGGGAAGGTCCTGCCCACCC +
Preference number: 5 (lower is better)
Translates to: FACTHCLLGSSPLGS*LCSHLRLLGRSCPP
Trigger: GGGTGGGCAGGACCTTCCCAGTAAACGGAGGTGGCTACAAAGCCAGCTCCCCAGCGGAGAGCTCCCCAGAAGACAGTGGGTACATGCGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GGCCACTCGGGCACCTTCTGGCTTTGGAGGTGCCACGATAGGTTGTaGCGGGGTTGCAGCCACACCAAAGGCCATCTCGGTATAGTCACC +
Preference number: 5 (lower is better)
Translates to: GHSGTFWLWRCHDRL*RGCSHTKGHLGIVT
Trigger: GGTGACTATACCGAGATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CTTCAAGCCCGATGTGGGACTGGCCACTCGGGCACCTTCTGGCTTTaGAGGTGCCACGATAGGTTGTGGCGGGGTTGCAGCCACACCAAA +
Preference number: 5 (lower is better)
Translates to: LQARCGTGHSGTFWL*RCHDRLWRGCSHTK
Trigger: TTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCCAGTCCCACATCGGGCTTGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp AGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTAGGTGACATACTGCGGGTGCTAGGCTaGGGGGACTTGGGAGAACTG +
Preference number: 5 (lower is better)
Translates to: SSEVTAILPASSALLGDILRVLG*GDLGEL
Trigger: CAGTTCTCCCAAGTCCCCCAAGCCTAGCACCCGCAG...TATGTCACCTAGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CCTGTGACGGAGCAGCGAGGTGACGGCGATTCTGCCGGCAAGCTCAGCCCTTCTTCCACAGAGGCCGAATaGTGGCGCTTGGAATTGTGG +
Preference number: 5 (lower is better)
Translates to: PVTEQRGDGDSAGKLSPSSTEAE*WRLELW
Trigger: CCACAATTCCAAGCGCCACAATTCGGCCTCTGTGGA...AGAAGGGCTGAGCTTGCCGGCAGAATCGCCGTCACCTCGCTGCTCCGTCACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp AGACCCTACGGTAAGGGCGGCCACAGTGGCTCAGGGGTCTATCCATaGTCATGTACCCATAGAGTTCGCCCCCACTGCCATCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: RPYGKGGHSGSGVYP*SCTHRVRPHCHLWL
Trigger: CAGCCAGAGATGGCAGTGGGGGCGAACTCTATGGGTACATGAGCATGGATAGACCCCTGAGCCACTGTGGCCGCCCTTACCGTAGGGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp TTGGGCTCTGTGGGTAGAGGGTACTCTTGCATGCTGGGAAGGGTCTaGAGTCCCTCTAGCGATAGGCGTGTAGGCCGCACTGCCCGACAT +
Preference number: 5 (lower is better)
Translates to: LGSVGRGYSCMLGRV*SPSSDRRVGRTARH
Trigger: ATGTCGGGCAGTGCGGCCTACACGCCTATCGCTAGAGGGACTGCAGACCCTTCCCAGCATGCAAGAGTACCCTCTACCCACAGAGCCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp CCAGGTTCATATAGTCAGAGAGTGGAGAGCGCTGCCGGCTGTCGCTaGTGGTGCCTGGGGTTCCTGAACCCAGGGATGAAGCAGGACTAC +
Preference number: 5 (lower is better)
Translates to: PGSYSQRVESAAGCR*WCLGFLNPGMKQDY
Trigger: GTAGTCCTGCTTCATCCCTGGGTTCAGGAACCCCAGGCACCAGCAGCGACAGCCGGCAGCGCTCTCCACTCTCTGACTATATGAACCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp CGCGCAGACAGGCATAGGCGGTATACACCAGTCAGGTTCTTGCTCTaGCCCAGTCCCTTAGGTTTCAGGTTCACCTGCCACACCTCGCGG +
Preference number: 5 (lower is better)
Translates to: RADRHRRYTPVRFLL*PSPLGFRFTCHTSR
Trigger: CCGCGAGGTGTGGCAGGTGAACCTGAAACCTAAGGGACTGGGCCAGAGCAAGAACCTGACTGGTGTATACCGCCTATGCCTGTCTGCGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp AGTCACCATTATCCCCAGGCTCGGAGGACATTGAGGAGCCAGCAGTaGGACCCTGGGAAGTGGCAGCTGATGCTGGAGGCAGGCGGTATA +
Preference number: 5 (lower is better)
Translates to: SHHYPQARRTLRSQQ*DPGKWQLMLEAGGI
Trigger: TATACCGCCTGCCTCCAGCATCAGCTGCCACTTCCCAGGGTCCCACTGCTGGCTCCTCAATGTCCTCCGAGCCTGGGGATAATGGTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGCACCGAGTCGTCGGCTaGCATCCACAGCTCCCCGGG +
Preference number: 5 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAEHRVVG*HPQLPG
Trigger: CCCGGGGAGCTGTGGATGCAAGCCGACGACTCGGTG...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GTGGCTGCAGGATCTGCTTGGGAGCAGACACGCTTGTGGGGCTCATaGGCATGTAGTCATCGCTCTTGCAGCTATTGGGACCACCACTCC +
Preference number: 5 (lower is better)
Translates to: VAAGSAWEQTRLWGS*ACSHRSCSYWDHHS
Trigger: GGAGTGGTGGTCCCAATAGCTGCAAGAGCGATGACTACATGCCCATGAGCCCCACAAGCGTGTCTGCTCCCAAGCAGATCCTGCAGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp AGACAGCTTGGAGCCACACCACATTCGCATGTACCCACTGTCTTCTaGGGAGCTCTCCGCTGGGGAGCTGGCTTTGTAGCCACCTCCGTT +
Preference number: 5 (lower is better)
Translates to: RQLGATPHSHVPTVF*GALRWGAGFVATSV
Trigger: AACGGAGGTGGCTACAAAGCCAGCTCCCCAGCGGAGAGCTCCCCAGAAGACAGTGGGTACATGCGAATGTGGTGTGGCTCCAAGCTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp GGTGACCACTCCCAGCATGGAGGGTGTGTCACATCTGCCTCGACGTGCTGTAGTCTAGGCTTGGGGGACTaGGGAGAACTGAAGTCCAGG +
Preference number: 5 (lower is better)
Translates to: GDHSQHGGCVTSASTCCSLGLGD*GELKSR
Trigger: CCTGGACTTCAGTTCTCCCAAGTCCCCCAAGCCTAG...ACTACAGCACGTCGAGGCAGATGTGACACACCCTCCATGCTGGGAGTGGTCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp TATAAGAGCGGGGCAAAGAGCTGTAGCAGTGGCCCGGGATGCCTTTaGGGCCTTCACTGCCTCCACGCAAAGCTGCTGAGAAGTCAGGTG +
Preference number: 5 (lower is better)
Translates to: YKSGAKSCSSGPGCL*GLHCLHAKLLRSQV
Trigger: CACCTGACTTCTCAGCAGCTTTGCGTGGAGGCAGTGAAGGCCTCAAAGGCATCCCGGGCCACTGCTACAGCTCTTTGCCCCGCTCTTATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp GGCACCTTCTGGCTTTGGAGGTGCCACGATAGGTTGTGGCGGGGTTaGAGCCACACCAAAGGCCATCTCGGTATAGTCACCATTATCCCC +
Preference number: 5 (lower is better)
Translates to: GTFWLWRCHDRLWRG*SHTKGHLGIVTIIP
Trigger: GGGGATAATGGTGACTATACCGAGATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp ACACCACATTCGCATGTACCCACTGTCTTCTGGGGAGCTCTCCGCTaGGGAGCTGGCTTTGTAGCCACCTCCGTTTACTGGGAAGGTCCT +
Preference number: 5 (lower is better)
Translates to: TPHSHVPTVFWGALR*GAGFVATSVYWEGP
Trigger: AGGACCTTCCCAGTAAACGGAGGTGGCTACAAAGCCAGCTCCCCAGCGGAGAGCTCCCCAGAAGACAGTGGGTACATGCGAATGTGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGGGACGGACGCTGGCCTaGGGGGTGATGCAGTGGATG +
Preference number: 5 (lower is better)
Translates to: PLLFRATLLANKSNIVPEGRTLA*GVMQWM
Trigger: CATCCACTGCATCACCCCCAAGGCCAGCGTCCGTCC...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 90 bp CTTTCACGACTGTGGCTTCCTTCAAGTGATGGGACAGGAAGTCGATaGTTGCATAGGTGCTGGCAGAGGGCAAAGCTCCAGTGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: LSRLWLPSSDGTGSR*LHRCWQRAKLQCLD
Trigger: GTCCAGGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACTTGAAGGAAGCCACAGTCGTGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp TCTCAATGTCTCCATAGTCCTCTGGGTAAGGGTTGTAGGCCACTTTaGGAGAGGACGCAGGGAAGGATGGGCAGAGGCGACCTGAACTAC +
Preference number: 5 (lower is better)
Translates to: SQCLHSPLGKGCRPL*ERTQGRMGRGDLNY
Trigger: GTAGTTCAGGTCGCCTCTGCCCATCCTTCCCTGCGTCCTCTCCCAAAGTGGCCTACAACCCTTACCCAGAGGACTATGGAGACATTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGAATCAGGTACTTGTGCTaGGCGTCCGCGCGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRIRYLC*ASARLL
Trigger: CAACAAGCGCGCGGACGCCAAGCACAAGTACCTGAT...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp AGGATGGGCAGAGGCGACCTGAACTACCAGAGAAGGTGGCCCTCATaGGAGTGTATTCATCTAGAGAGGCAGAGGAAGGCTGAGGTACCT +
Preference number: 5 (lower is better)
Translates to: RMGRGDLNYQRRWPS*ECIHLERQRKAEVP
Trigger: AGGTACCTCAGCCTTCCTCTGCCTCTCTAGATGAATACACTCTCATGAGGGCCACCTTCTCTGGTAGTTCAGGTCGCCTCTGCCCATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGTTGGCGTCCGCGCGCTaGTTGATGTTCAGACAGCAG +
Preference number: 5 (lower is better)
Translates to: PLLFRATLLANKSNIVPELASAR*LMFRQQ
Trigger: CTGCTGTCTGAACATCAACAAGCGCGCGGACGCCAA...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp AACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGACAGGAAGTCGATGCTaGCATAGGTGCTGGCAGAGG +
Preference number: 5 (lower is better)
Translates to: NKMQHKPCDEGWCVGTAETGSRC*HRCWQR
Trigger: CCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGT...CTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 90 bp GCTCATCACCTCCTCCCAGGGTACTGCTGCCTTCACTGCTTTTCCTaGGTGAGACATTTTCCACAGAGGCCGAATTGTGGCGCTTGGAAT +
Preference number: 5 (lower is better)
Translates to: AHHLLPGYCCLHCFS*VRHFPQRPNCGAWN
Trigger: ATTCCAAGCGCCACAATTCGGCCTCTGTGGAAAATGTCTCACTCAGGAAAAGCAGTGAAGGCAGCAGTACCCTGGGAGGAGGTGATGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ACTCCAGTTTATTCTTGTCTTCAGCGGCATCACGTGACCCCTATATACAGCATGTGGCTAGGGGGTAGGTaGACTAGGTGGTGGTGGCGG +
Preference number: 5 (lower is better)
Translates to: TPVYSCLQRHHVTPIYSMWLGGR*TRWWWR
Trigger: CCGCCACCACCACCTAGTCAACCTACCCCCTAGCCA...CATGCTGTATATAGGGGTCACGTGATGCCGCTGAAGACAAGAATAAACTGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTGGCTGCAGGATCTGCTaGGGAGCAGACACGCTTGTG +
Preference number: 5 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCGCRIC*GADTLV
Trigger: CACAAGCGTGTCTGCTCCCAAGCAGATCCTGCAGCC...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ACAAAATGCAACACAAACCGTGCGATGAGGGCTGGTGTGTGGGGACAGCTGAGAGCCGAATTGTGGCGCTaGGAATTGTGGGCAAAGGAT +
Preference number: 5 (lower is better)
Translates to: TKCNTNRAMRAGVWGQLRAELWR*ELWAKD
Trigger: ATCCTTTGCCCACAATTCCAAGCGCCACAATTCGGC...TCTCAGCTGTCCCCACACACCAGCCCTCATCGCACGGTTTGTGTTGCATTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 90 bp GCTGGAACTCTTGTGAGAACCAATCTCAATGTCTCCATAGTCCTCTaGGTAAGGGTTGTAGGCCACTTTGGGAGAGGACGCAGGGAAGGA +
Preference number: 5 (lower is better)
Translates to: AGTLVRTNLNVSIVL*VRVVGHFGRGRREG
Trigger: TCCTTCCCTGCGTCCTCTCCCAAAGTGGCCTACAACCCTTACCCAGAGGACTATGGAGACATTGAGATTGGTTCTCACAAGAGTTCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CCCCTCCTGTTCAGGGCAACCTTGTTGGCCAACAAAAGTAACATTGTGCCAGAGATTGACTCGGGTGTGTaGCTCCTGTGGCTACTGAAG +
Preference number: 5 (lower is better)
Translates to: PLLFRATLLANKSNIVPEIDSGV*LLWLLK
Trigger: CTTCAGTAGCCACAGGAGCAACACACCCGAGTCAAT...CTCTGGCACAATGTTACTTTTGTTGGCCAACAAGGTTGCCCTGAACAGGAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACATGGCCCGGGATGCCTTaGAGGCCTTCACTGCCTCCA +
Preference number: 5 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTWPGMP*RPSLPP
Trigger: TGGAGGCAGTGAAGGCCTCAAAGGCATCCCGGGCCA...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp TCCCGGAGTGTACGCCATCAGCCCGTCAGTTCACAAAGGAAACAAAATGCAACATTGTGGCGCTTGGAATaGTGGGCAAAGGATGGGGAC +
Preference number: 5 (lower is better)
Translates to: SRSVRHQPVSSQRKQNATLWRLE*WAKDGD
Trigger: GTCCCCATCCTTTGCCCACAATTCCAAGCGCCACAA...TGTTGCATTTTGTTTCCTTTGTGAACTGACGGGCTGATGGCGTACACTCCGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp AAGAGTCACAGCCAGGAGGCTTGTGGAGGGGAGAAAAGGCTCTTGCAATCTGAACGCACGCTGTGGTTGTaGTTGTTGTTGTTGTTATTG +
Preference number: 5 (lower is better)
Translates to: KSHSQEACGGEKRLLQSERTLWL*LLLLLL
Trigger: CAATAACAACAACAACAACAACAACCACAGCGTGCG...TTCAGATTGCAAGAGCCTTTTCTCCCCTCCACAAGCCTCCTGGCTGTGACTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACAGACGGCTGTTCGCAATaGAGCTTCACGAAGCCGATG +
Preference number: 5 (lower is better)
Translates to: YTACTVEDNREGKSLVETDGCSQ*SFTKPM
Trigger: CATCGGCTTCGTGAAGCTCAATTGCGAACAGCCGTC...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp TATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACATTGTTGTTGTTGTTATaGAGGTTCGGGCCGTCCCCG +
Preference number: 5 (lower is better)
Translates to: YTACTVEDNREGKSLVETLLLLL*RFGPSP
Trigger: CGGGGACGGCCCGAACCTCAATAACAACAACAACAA...TGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp GACCACTTCCATGTATATTATAGCATCTCCTTGCATGCTGAGGGATTAATCCACAACACGAAAAAGCGCTaGTGGCCGTGCTTCTGCTTG +
Preference number: 5 (lower is better)
Translates to: DHFHVYYSISLHAEGLIHNTKKR*WPCFCL
Trigger: CAAGCAGAAGCACGGCCACAAGCGCTTTTTCGTGTT...GTGGATTAATCCCTCAGCATGCAAGGAGATGCTATAATATACATGGAAGTGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp GTAAACCTTGAGAATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTTCACCAAAGTCAATGTaGATGTACTCGCCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: VNLENWRGVWGDQFTFNFSPKSM*MYSPGL
Trigger: GAGCCCTGGCGAGTACATCAACATTGACTTTGGTGA...AAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAATTCTCAAGGTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ACCCCTATATACAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGGTTGTTGTTGTTGTaGTTGTTATTGAGGTTCGGG +
Preference number: 5 (lower is better)
Translates to: TPIYSMYSGRQQGGQVSCWLLLL*LLLRFG
Trigger: CCCGAACCTCAATAACAACAACAACAACAACAACCA...ACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTGTATATAGGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp GCAGCGTTGGTCGGAAACATGCCAAGCATCTCCTTCGAATGGATTCAGAGTTTTACGCTGTGGTTGTTGTaGTTGTTGTTGTTATTGAGG +
Preference number: 5 (lower is better)
Translates to: AALVGNMPSISFEWIQSFTLWLL*LLLLLR
Trigger: CCTCAATAACAACAACAACAACAACAACCACAGCGT...AAAACTCTGAATCCATTCGAAGGAGATGCTTGGCATGTTTCCGACCAACGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp ATTGGCGCGGGGTGTGGGGAGATCAATTTACATTCAACTTTGTCTTGCAATACAAACTCGAAGAGCTCTTaGAGTGCCTTCATAGCTTCT +
Preference number: 5 (lower is better)
Translates to: IGAGCGEINLHSTLSCNTNSKSS*SAFIAS
Trigger: AGAAGCTATGAAGGCACTCAAAGAGCTCTTCGAGTT...TGTATTGCAAGACAAAGTTGAATGTAAATTGATCTCCCCACACCCCGCGCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS-3UTR CAA 90 bp CAGCATGTACAGTGGAAGACAACAGGGAGGGCAAGTCTCTTGTTGAAACACAATCTGTGGTTGTTGTTGTaGTTGTTGTTATTGAGGTTC +
Preference number: 5 (lower is better)
Translates to: QHVQWKTTGRASLLLKHNLWLLL*LLLLRF
Trigger: GAACCTCAATAACAACAACAACAACAACAACCACAG...ATTGTGTTTCAACAAGAGACTTGCCCTCCCTGTTGTCTTCCACTGTACATGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp TTGCTCGGGCGGCCTCCGCAGCCGGCGCTCAGGGTGTaGGAGCGGCTAAGGGGCGCGCGCACCGGCCCGGGA +
Preference number: 6 (lower is better)
Translates to: LLGRPPQPALRV*ERLRGARTGPG
Trigger: TCCCGGGCCGGTGCGCGCGCCCCTTAGCCGCTCGCACACCCTGAGCGCCGGCTGCGGAGGCCGCCCGAGCAA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp GAGCGGCGCACCAGGCCGGTCTGGCTAGGGGGTAGGTaGACTAGGTGGTGGTGGCGGCGCGCGCCCGGCACG +
Preference number: 6 (lower is better)
Translates to: ERRTRPVWLGGR*TRWWWRRAPGT
Trigger: CGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCGCCGCTC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp GAGCGGCTGTGTTGCAGGGCTCCCCCTGCCGGCGCCAGAGTCACTTaGCTCGGGCGGCCTCCGCAGCCGGCGCTCAGGGTGTGCGAGCGG +
Preference number: 6 (lower is better)
Translates to: ERLCCRAPPAGARVT*LGRPPQPALRVCER
Trigger: CCGCTCGCACACCCTGAGCGCCGGCTGCGGAGGCCGCCCGAGCAAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAACACAGCCGCTC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp GCGGCGCGCGCCCGGCACGCTGATGGGATGCGTGGCTaGCGACCCGGACGACTGACTCTTGCTGCGAGGCCG +
Preference number: 6 (lower is better)
Translates to: AARARHADGMRG*RPGRLTLAARP
Trigger: CGGCCTCGCAGCAAGAGTCAGTCGTCCGGGTCGTCAGCCACGCATCCCATCAGCGTGCCGGGCGCGCGCCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp TGTTGCAGGGCTCCCCCTGCCGGCGCCAGAGTCACTTaGCTCGGGCGGCCTCCGCAGCCGGCGCTCAGGGTG +
Preference number: 6 (lower is better)
Translates to: CCRAPPAGARVT*LGRPPQPALRV
Trigger: CACCCTGAGCGCCGGCTGCGGAGGCCGCCCGAGCAAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAACA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp TCAGTGCGCGAGCGGCGCACCAGGCCGGTCTGGCTAGGGGGTAGGTaGACTAGGTGGTGGTGGCGGCGCGCGCCCGGCACGCTGATGGGA +
Preference number: 6 (lower is better)
Translates to: SVRERRTRPVWLGGR*TRWWWRRAPGTLMG
Trigger: TCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCGCCGCTCGCGCACTGA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GCAAAGCTCCAGTGCCTGGACCCCCACACACTCCGCTaGCGCCAGAGCCTCCGACGGTGCCGAGGAGCCCCC +
Preference number: 6 (lower is better)
Translates to: AKLQCLDPHTLR*RQSLRRCRGAP
Trigger: GGGGGCTCCTCGGCACCGTCGGAGGCTCTGGCGCCAGCGGAGTGTGTGGGGGTCCAGGCACTGGAGCTTTGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp CCGGTCTGGCTAGGGGGTAGGTTGACTAGGTGGTGGTaGCGGCGCGCGCCCGGCACGCTGATGGGATGCGTG +
Preference number: 6 (lower is better)
Translates to: PVWLGGRLTRWW*RRAPGTLMGCV
Trigger: CACGCATCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGGCCGGTCTGGCTAGGGGGTAGGTTGACTAGGTGGTaGTGGCGGCGCGCGCCCGGCACGCTGATGGGATGC +
Preference number: 6 (lower is better)
Translates to: RPVWLGGRLTRW*WRRAPGTLMGC
Trigger: GCATCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp ACCAGGCCGGTCTGGCTAGGGGGTAGGTTGACTAGGTaGTGGTGGCGGCGCGCGCCCGGCACGCTGATGGGA +
Preference number: 6 (lower is better)
Translates to: TRPVWLGGRLTR*WWRRAPGTLMG
Trigger: TCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGTCGCTGGGGGAGCCCGAGGCGGAGGCACTACCGCTaGACGGACGCTGGCCTTGGGGGTGATGCAGTGGAT +
Preference number: 6 (lower is better)
Translates to: GRWGSPRRRHYR*TDAGLGGDAVD
Trigger: ATCCACTGCATCACCCCCAAGGCCAGCGTCCGTCCAGCGGTAGTGCCTCCGCCTCGGGCTCCCCCAGCGACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGGCTGACCGGGGTTCCACGGCCTAGCCTGTGGCACTaGGGGCACAGCCACCAAGGGCTGTGCCTGTCCTGG +
Preference number: 6 (lower is better)
Translates to: GLTGVPRPSLWH*GHSHQGLCLSW
Trigger: CCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTGCCACAGGCTAGGCCGTGGAACCCCGGTCAGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp GCCACCTCCGTTTACTGGGAAGGTCCTGCCCACCCCTaGAGGGGGTGCTGGCACGGCTGCTCCGGAAGGGGG +
Preference number: 6 (lower is better)
Translates to: ATSVYWEGPAHP*RGCWHGCSGRG
Trigger: CCCCCTTCCGGAGCAGCCGTGCCAGCACCCCCTTCAGGGGTGGGCAGGACCTTCCCAGTAAACGGAGGTGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp CATGGACATGGAGCGGCTGTGTTGCAGGGCTCCCCCTaGCGGCGCCAGAGTCACTTTGCTCGGGCGGCCTCC +
Preference number: 6 (lower is better)
Translates to: HGHGAAVLQGSP*RRQSHFARAAS
Trigger: GGAGGCCGCCCGAGCAAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAACACAGCCGCTCCATGTCCATG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGGCTGTCAGTGCGCGAGCGGCGCACCAGGCCGGTCTaGCTAGGGGGTAGGTTGACTAGGTGGTGGTGGCGG +
Preference number: 6 (lower is better)
Translates to: RLSVRERRTRPV*LGGRLTRWWWR
Trigger: CCGCCACCACCACCTAGTCAACCTACCCCCTAGCCAGACCGGCCTGGTGCGCCGCTCGCGCACTGACAGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGCGATAGGCGTGTAGGCCGCACTGCCCGACATCGCTaGCCCAGGAAGCCCTCAGGGCGGCCACCGATGGCA +
Preference number: 6 (lower is better)
Translates to: SDRRVGRTARHR*PRKPSGRPPMA
Trigger: TGCCATCGGTGGCCGCCCTGAGGGCTTCCTGGGCCAGCGATGTCGGGCAGTGCGGCCTACACGCCTATCGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GAGTGCGCCACGGGCATGGACATGGAGCGGCTGTGTTaGAGGGCTCCCCCTGCCGGCGCCAGAGTCACTTTG +
Preference number: 6 (lower is better)
Translates to: ECATGMDMERLC*RAPPAGARVTL
Trigger: CAAAGTGACTCTGGCGCCGGCAGGGGGAGCCCTGCAACACAGCCGCTCCATGTCCATGCCCGTGGCGCACTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GCTCCGGAAGGGGGCAAGGCCGCTGCCAAGCGTGGCTaGAGGATCTGCTTGGGAGCAGACACGCTTGTGGGG +
Preference number: 6 (lower is better)
Translates to: APEGGKAAAKRG*RICLGADTLVG
Trigger: CCCCACAAGCGTGTCTGCTCCCAAGCAGATCCTGCAGCCACGCTTGGCAGCGGCCTTGCCCCCTTCCGGAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp TGCTGGCACGGCTGCTCCGGAAGGGGGCAAGGCCGCTaGCAAGCGTGGCTGCAGGATCTGCTTGGGAGCAGA +
Preference number: 6 (lower is better)
Translates to: CWHGCSGRGQGR*QAWLQDLLGSR
Trigger: TCTGCTCCCAAGCAGATCCTGCAGCCACGCTTGGCAGCGGCCTTGCCCCCTTCCGGAGCAGCCGTGCCAGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp AGCCTGTGGCACTGGGGGCACAGCCACCAAGGGCTGTaGCTGTCCTGGGGATGTGGGCGGCTCATCACCTCC +
Preference number: 6 (lower is better)
Translates to: SLWHWGHSHQGL*LSWGCGRLITS
Trigger: GGAGGTGATGAGCCGCCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTGCCACAGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp CACTGGGGGCACAGCCACCAAGGGCTGTGCCTGTCCTaGGGATGTGGGCGGCTCATCACCTCCTCCCAGGGT +
Preference number: 6 (lower is better)
Translates to: HWGHSHQGLCLS*GCGRLITSSQG
Trigger: ACCCTGGGAGGAGGTGATGAGCCGCCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp CTGCTGCCTCCAGGACAGCCAATCAAAGCTCCGGGCTaGCCGGGGTTCCACGGCCTAGCCTGTGGCACTGGG +
Preference number: 6 (lower is better)
Translates to: LLPPGQPIKAPG*PGFHGLACGTG
Trigger: CCCAGTGCCACAGGCTAGGCCGTGGAACCCCGGTCAGCCCGGAGCTTTGATTGGCTGTCCTGGAGGCAGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp CTCGCCAGAGCGGCCTTCGCTGACCAAGTCGGTGAGTaGGCGGTACCAGCCCTCCTGCTCCTGCTCGTTCTC +
Preference number: 6 (lower is better)
Translates to: LARAAFADQVGE*AVPALLLLLVL
Trigger: GAGAACGAGCAGGAGCAGGAGGGCTGGTACCGCGCACTCACCGACTTGGTCAGCGAAGGCCGCTCTGGCGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGCTGCTCCGGAAGGGGGCAAGGCCGCTGCCAAGCGTaGCTGCAGGATCTGCTTGGGAGCAGACACGCTTGT +
Preference number: 6 (lower is better)
Translates to: GCSGRGQGRCQA*LQDLLGSRHAC
Trigger: ACAAGCGTGTCTGCTCCCAAGCAGATCCTGCAGCCACGCTTGGCAGCGGCCTTGCCCCCTTCCGGAGCAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp ATCGCTGGCCCAGGAAGCCCTCAGGGCGGCCACCGATaGCACTCGGCCTCATGGAGGAAGGCACTGCTGAGT +
Preference number: 6 (lower is better)
Translates to: IAGPGSPQGGHR*HSASWRKALLS
Trigger: ACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTGCCATCGGTGGCCGCCCTGAGGGCTTCCTGGGCCAGCGAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GCACAGCCACCAAGGGCTGTGCCTGTCCTGGGGATGTaGGCGGCTCATCACCTCCTCCCAGGGTACTGCTGC +
Preference number: 6 (lower is better)
Translates to: AQPPRAVPVLGM*AAHHLLPGYCC
Trigger: GCAGCAGTACCCTGGGAGGAGGTGATGAGCCGCCCACATCCCCAGGACAGGCACAGCCCTTGGTGGCTGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp TGCATAGGTGCTGGCAGAGGGCAAAGCTCCAGTGCCTaGACCCCCACACACTCCGCTGGCGCCAGAGCCTCC +
Preference number: 6 (lower is better)
Translates to: CIGAGRGQSSSA*TPTHSAGARAS
Trigger: GGAGGCTCTGGCGCCAGCGGAGTGTGTGGGGGTCCAGGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp CCTCAGTCCTCTATCCAGGTCCTGGGCCCCATCCCCTaGGACCCTACGGTAAGGGCGGCCACAGTGGCTCAG +
Preference number: 6 (lower is better)
Translates to: PQSSIQVLGPIP*DPTVRAATVAQ
Trigger: CTGAGCCACTGTGGCCGCCCTTACCGTAGGGTCTCAGGGGATGGGGCCCAGGACCTGGATAGAGGACTGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GGGACTGGCCACTCGGGCACCTTCTGGCTTTGGAGGTaGCACGATAGGTTGTGGCGGGGTTGCAGCCACACC +
Preference number: 6 (lower is better)
Translates to: GTGHSGTFWLWR*HDRLWRGCSHT
Trigger: GGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCCAGTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp TCAGGTTCACCTGCCACACCTCGCGGTAGACGGCCGTaGCGGGTGTCACGAGCCCGTAGTTGTCATCGCAGC +
Preference number: 6 (lower is better)
Translates to: SGSPATPRGRRP*RVSRARSCHRS
Trigger: GCTGCGATGACAACTACGGGCTCGTGACACCCGCCACGGCCGTCTACCGCGAGGTGTGGCAGGTGAACCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp AAGTCGGTGAGTGCGCGGTACCAGCCCTCCTGCTCCTaGTCGTTCTCCGCCGCTACAGCGAAGTACTCGTCC +
Preference number: 6 (lower is better)
Translates to: KSVSARYQPSCS*SFSAATAKYSS
Trigger: GGACGAGTACTTCGCTGTAGCGGCGGAGAACGAGCAGGAGCAGGAGGGCTGGTACCGCGCACTCACCGACTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp CTGACCAAGTCGGTGAGTGCGCGGTACCAGCCCTCCTaGTCCTGCTCGTTCTCCGCCGCTACAGCGAAGTAC +
Preference number: 6 (lower is better)
Translates to: LTKSVSARYQPS*SCSFSAATAKY
Trigger: GTACTTCGCTGTAGCGGCGGAGAACGAGCAGGAGCAGGAGGGCTGGTACCGCGCACTCACCGACTTGGTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp TGGCTTTGTAGCCACCTCCGTTTACTGGGAAGGTCCTaGCCACCCCTGAAGGGGGTGCTGGCACGGCTGCTC +
Preference number: 6 (lower is better)
Translates to: WLCSHLRLLGRS*PPLKGVLARLL
Trigger: GAGCAGCCGTGCCAGCACCCCCTTCAGGGGTGGGCAGGACCTTCCCAGTAAACGGAGGTGGCTACAAAGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp CAAGCCCGATGTGGGACTGGCCACTCGGGCACCTTCTaGCTTTGGAGGTGCCACGATAGGTTGTGGCGGGGT +
Preference number: 6 (lower is better)
Translates to: QARCGTGHSGTF*LWRCHDRLWRG
Trigger: ACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCCAGTCCCACATCGGGCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp CTGCCATCTCTGGCTGGCGGGGTCTCCGCTATTGACTCGGGTGTGTaGCTCCTGTGGCTACTGAAGGCTCTCAGGTCGCCAGGGCTGGAG +
Preference number: 6 (lower is better)
Translates to: LPSLAGGVSAIDSGV*LLWLLKALRSPGLE
Trigger: CTCCAGCCCTGGCGACCTGAGAGCCTTCAGTAGCCACAGGAGCAACACACCCGAGTCAATAGCGGAGACCCCGCCAGCCAGAGATGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp GCCTTTGAGGCCTTCACTGCCTCCACGCAAAGCTGCTaGGAAGTCAGGTGGGGTCCCTGCAGTGCCTGCCTC +
Preference number: 6 (lower is better)
Translates to: AFEAFTASTQSC*EVRWGPCSACL
Trigger: GAGGCAGGCACTGCAGGGACCCCACCTGACTTCTCAGCAGCTTTGCGTGGAGGCAGTGAAGGCCTCAAAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp AGTGGAAGGACGTGGGGGCAGTGGTGGGTATGGGGATaGAGCCTCTGGAGAGAGAAGGCCATCCATGGAGCC +
Preference number: 6 (lower is better)
Translates to: SGRTWGQWWVWG*SLWREKAIHGA
Trigger: GGCTCCATGGATGGCCTTCTCTCTCCAGAGGCTTCATCCCCATACCCACCACTGCCCCCACGTCCTTCCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp AACCCACGGAGGTCTCTCTGCGCATGGGAGAACTGCTaGCTCCAGGACAGCCAATCAAAGCTCCGGGCTGAC +
Preference number: 6 (lower is better)
Translates to: NPRRSLCAWENC*LQDSQSKLRAD
Trigger: GTCAGCCCGGAGCTTTGATTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GGAAACCCACGGAGGTCTCTCTGCGCATGGGAGAACTaGTGCCTCCAGGACAGCCAATCAAAGCTCCGGGCT +
Preference number: 6 (lower is better)
Translates to: GNPRRSLCAWEN*CLQDSQSKLRA
Trigger: AGCCCGGAGCTTTGATTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGGGTTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGAGCCACACCACATTCGCATGTACCCACTGTCTTCTaGGGAGCTCTCCGCTGGGGAGCTGGCTTTGTAGCC +
Preference number: 6 (lower is better)
Translates to: GATPHSHVPTVF*GALRWGAGFVA
Trigger: GGCTACAAAGCCAGCTCCCCAGCGGAGAGCTCCCCAGAAGACAGTGGGTACATGCGAATGTGGTGTGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGGACATTGAGGAGCCAGCAGTGGGACCCTGGGAAGTaGCAGCTGATGCTGGAGGCAGGCGGTATAGGTCTC +
Preference number: 6 (lower is better)
Translates to: RTLRSQQWDPGK*QLMLEAGGIGL
Trigger: GAGACCTATACCGCCTGCCTCCAGCATCAGCTGCCACTTCCCAGGGTCCCACTGCTGGCTCCTCAATGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGCACCTTCTGGCTTTGGAGGTGCCACGATAGGTTGTaGCGGGGTTGCAGCCACACCAAAGGCCATCTCGGT +
Preference number: 6 (lower is better)
Translates to: GTFWLWRCHDRL*RGCSHTKGHLG
Trigger: ACCGAGATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp CCGCACTTGCGCACGCTGTGGTTGTTGTTGTTGTTGTaGTTATTGAGGTTCGGGCCGTCCCCGCCCGCCGAC +
Preference number: 6 (lower is better)
Translates to: PHLRTLWLLLLL*LLRFGPSPPAD
Trigger: GTCGGCGGGCGGGGACGGCCCGAACCTCAATAACAACAACAACAACAACAACCACAGCGTGCGCAAGTGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp TCGGGCACCTTCTGGCTTTGGAGGTGCCACGATAGGTaGTGGCGGGGTTGCAGCCACACCAAAGGCCATCTC +
Preference number: 6 (lower is better)
Translates to: SGTFWLWRCHDR*WRGCSHTKGHL
Trigger: GAGATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp ACTGGCCACTCGGGCACCTTCTGGCTTTGGAGGTGCCACGATAGGTaGTGGCGGGGTTGCAGCCACACCAAAGGCCATCTCGGTATAGTC +
Preference number: 6 (lower is better)
Translates to: TGHSGTFWLWRCHDR*WRGCSHTKGHLGIV
Trigger: GACTATACCGAGATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp ACCGATGGCACTCGGCCTCATGGAGGAAGGCACTGCTaGGTGATGAGGCTGGGTATGACTACCACCAGCTGC +
Preference number: 6 (lower is better)
Translates to: TDGTRPHGGRHC*VMRLGMTTTSC
Trigger: GCAGCTGGTGGTAGTCATACCCAGCCTCATCACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTGCCATCGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GGTAAGGGCGGCCACAGTGGCTCAGGGGTCTATCCATaGTCATGTACCCATAGAGTTCGCCCCCACTGCCAT +
Preference number: 6 (lower is better)
Translates to: GKGGHSGSGVYP*SCTHRVRPHCH
Trigger: ATGGCAGTGGGGGCGAACTCTATGGGTACATGAGCATGGATAGACCCCTGAGCCACTGTGGCCGCCCTTACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GTGGGTAGAGGGTACTCTTGCATGCTGGGAAGGGTCTaGAGTCCCTCTAGCGATAGGCGTGTAGGCCGCACT +
Preference number: 6 (lower is better)
Translates to: VGRGYSCMLGRV*SPSSDRRVGRT
Trigger: AGTGCGGCCTACACGCCTATCGCTAGAGGGACTGCAGACCCTTCCCAGCATGCAAGAGTACCCTCTACCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GAGAGGCAGAGGAAGGCTGAGGTACCTGCCGCTGCCTaGCAGGCGTGGTTAGGGAATAAGTCCTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: ERQRKAEVPAAA*QAWLGNKSSSS
Trigger: TGAGGAAGAGGACTTATTCCCTAACCACGCCTGCCAGGCAGCGGCAGGTACCTCAGCCTTCCTCTGCCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp TCGCATGTACCCACTGTCTTCTGGGGAGCTCTCCGCTaGGGAGCTGGCTTTGTAGCCACCTCCGTTTACTGG +
Preference number: 6 (lower is better)
Translates to: SHVPTVFWGALR*GAGFVATSVYW
Trigger: CCAGTAAACGGAGGTGGCTACAAAGCCAGCTCCCCAGCGGAGAGCTCCCCAGAAGACAGTGGGTACATGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGGAGAACTGAAGTCCAGGTTCATATAGTCAGAGAGTaGAGAGCGCTGCCGGCTGTCGCTGCTGGTGCCTGG +
Preference number: 6 (lower is better)
Translates to: GRTEVQVHIVRE*RALPAVAAGAW
Trigger: CCAGGCACCAGCAGCGACAGCCGGCAGCGCTCTCCACTCTCTGACTATATGAACCTGGACTTCAGTTCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGCCGTTCTGGAAACCCACGGAGGTCTCTCTGCGCATaGGAGAACTGCTGCCTCCAGGACAGCCAATCAAAG +
Preference number: 6 (lower is better)
Translates to: GRSGNPRRSLCA*ENCCLQDSQSK
Trigger: CTTTGATTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGGGTTTCCAGAACGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGTGATGGGACAGGAAGTCGATGCTTGCATAGGTGCTaGCAGAGGGCAAAGCTCCAGTGCCTGGACCCCCAC +
Preference number: 6 (lower is better)
Translates to: SDGTGSRCLHRC*QRAKLQCLDPH
Trigger: GTGGGGGTCCAGGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp GCGATCAGGTACTTGTGCTTGGCGTCCGCGCGCTTGTaGATGTTCAGACAGCAGTCGAGCGCGATCACTCGC +
Preference number: 6 (lower is better)
Translates to: AIRYLCLASARL*MFRQQSSAITR
Trigger: GCGAGTGATCGCGCTCGACTGCTGTCTGAACATCAACAAGCGCGCGGACGCCAAGCACAAGTACCTGATCGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp ATGGTGCGCGCAGACAGGCATAGGCGGTATACACCAGTCAGGTTCTaGCTCTGGCCCAGTCCCTTAGGTTTCAGGTTCACCTGCCACACC +
Preference number: 6 (lower is better)
Translates to: MVRADRHRRYTPVRF*LWPSPLGFRFTCHT
Trigger: GGTGTGGCAGGTGAACCTGAAACCTAAGGGACTGGGCCAGAGCAAGAACCTGACTGGTGTATACCGCCTATGCCTGTCTGCGCGCACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp TCACGACTGTGGCTTCCTTCAAGTGATGGGACAGGAAGTCGATGCTaGCATAGGTGCTGGCAGAGGGCAAAGCTCCAGTGCCTGGACCCC +
Preference number: 6 (lower is better)
Translates to: SRLWLPSSDGTGSRC*HRCWQRAKLQCLDP
Trigger: GGGGTCCAGGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACTTGAAGGAAGCCACAGTCGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp CGATCAGGTACTTGTGCTTGGCGTCCGCGCGCTTGTTaGTGTTCAGACAGCAGTCGAGCGCGATCACTCGCT +
Preference number: 6 (lower is better)
Translates to: RSGTCAWRPRAC*CSDSSRARSLA
Trigger: AGCGAGTGATCGCGCTCGACTGCTGTCTGAACATCAACAAGCGCGCGGACGCCAAGCACAAGTACCTGATCG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS TCA 72 bp ACCCCTGCTCGCCTCTCACATCGATGGCGATATAGTTaGGGCCGTTCTGGAAACCCACGGAGGTCTCTCTGC +
Preference number: 6 (lower is better)
Translates to: TPARLSHRWRYS*GRSGNPRRSLC
Trigger: GCAGAGAGACCTCCGTGGGTTTCCAGAACGGCCTCAACTATATCGCCATCGATGTGAGAGGCGAGCAGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp TGGCTTTGGAGGTGCCACGATAGGTTGTGGCGGGGTTaGAGCCACACCAAAGGCCATCTCGGTATAGTCACC +
Preference number: 6 (lower is better)
Translates to: WLWRCHDRLWRG*SHTKGHLGIVT
Trigger: GGTGACTATACCGAGATGGCCTTTGGTGTGGCTGCAACCCCGCCACAACCTATCGTGGCACCTCCAAAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp TCAAGTGATGGGACAGGAAGTCGATGCTTGCATAGGTaGTGGCAGAGGGCAAAGCTCCAGTGCCTGGACCCC +
Preference number: 6 (lower is better)
Translates to: SSDGTGSRCLHR*WQRAKLQCLDP
Trigger: GGGGTCCAGGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GCTCGTTCTCCGCCGCTACAGCGAAGTACTCGTCCTTaGTGTAGAGGGCGATCAGGTACTTGTGCTTGGCGT +
Preference number: 6 (lower is better)
Translates to: ARSPPLQRSTRP*CRGRSGTCAWR
Trigger: ACGCCAAGCACAAGTACCTGATCGCCCTCTACACCAAGGACGAGTACTTCGCTGTAGCGGCGGAGAACGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp AGGGCGATCAGGTACTTGTGCTTGGCGTCCGCGCGCTaGTTGATGTTCAGACAGCAGTCGAGCGCGATCACT +
Preference number: 6 (lower is better)
Translates to: RAIRYLCLASAR*LMFRQQSSAIT
Trigger: AGTGATCGCGCTCGACTGCTGTCTGAACATCAACAAGCGCGCGGACGCCAAGCACAAGTACCTGATCGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp GGCTTCCTTCAAGTGATGGGACAGGAAGTCGATGCTTaGATAGGTGCTGGCAGAGGGCAAAGCTCCAGTGCC +
Preference number: 6 (lower is better)
Translates to: GFLQVMGQEVDA*IGAGRGQSSSA
Trigger: GGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACTTGAAGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGGAAGGCTGAGGTACCTGCCGCTGCCTGGCAGGCGTaGTTAGGGAATAAGTCCTCTTCCTCAGTCCTCTAT +
Preference number: 6 (lower is better)
Translates to: RKAEVPAAAWQA*LGNKSSSSVLY
Trigger: ATAGAGGACTGAGGAAGAGGACTTATTCCCTAACCACGCCTGCCAGGCAGCGGCAGGTACCTCAGCCTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp GGATCTGCTTGGGAGCAGACACGCTTGTGGGGCTCATaGGCATGTAGTCATCGCTCTTGCAGCTATTGGGAC +
Preference number: 6 (lower is better)
Translates to: GSAWEQTRLWGS*ACSHRSCSYWD
Trigger: GTCCCAATAGCTGCAAGAGCGATGACTACATGCCCATGAGCCCCACAAGCGTGTCTGCTCCCAAGCAGATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AAGATCCGGCCCACAGGGGAGCTCATGAGCACATACTaGTCATTGTCTCCGCTGCAGGAACAGGGAGCCTTA +
Preference number: 6 (lower is better)
Translates to: KIRPTGELMSTY*SLSPLQEQGAL
Trigger: TAAGGCTCCCTGTTCCTGCAGCGGAGACAATGACCAGTATGTGCTCATGAGCTCCCCTGTGGGCCGGATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp ATGGAGCCTACTGTGTCCCCACTGCGGGTGCTAGGCTaGGGGGACTTGGGAGAACTGAAGTCCAGGTTCATA +
Preference number: 6 (lower is better)
Translates to: MEPTVSPLRVLG*GDLGELKSRFI
Trigger: TATGAACCTGGACTTCAGTTCTCCCAAGTCCCCCAAGCCTAGCACCCGCAGTGGGGACACAGTAGGCTCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 90 bp GTACCTGCCTCACCAAAGTCAATGTTGATGTACTCGCCAGGGCTCTaGGGCTCTGTGGGTAGAGGGTACTCTTGCATGCTGGGAAGGGTC +
Preference number: 6 (lower is better)
Translates to: VPASPKSMLMYSPGL*GSVGRGYSCMLGRV
Trigger: GACCCTTCCCAGCATGCAAGAGTACCCTCTACCCACAGAGCCCAAGAGCCCTGGCGAGTACATCAACATTGACTTTGGTGAGGCAGGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp CTGTGGCTTCCTTCAAGTGATGGGACAGGAAGTCGATaGTTGCATAGGTGCTGGCAGAGGGCAAAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: LWLPSSDGTGSR*LHRCWQRAKLQ
Trigger: CTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACTTGAAGGAAGCCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp AGGCATAGGCGGTATACACCAGTCAGGTTCTTGCTCTaGCCCAGTCCCTTAGGTTTCAGGTTCACCTGCCAC +
Preference number: 6 (lower is better)
Translates to: RHRRYTPVRFLL*PSPLGFRFTCH
Trigger: GTGGCAGGTGAACCTGAAACCTAAGGGACTGGGCCAGAGCAAGAACCTGACTGGTGTATACCGCCTATGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp TGGCTTCCTTCAAGTGATGGGACAGGAAGTCGATGCTaGCATAGGTGCTGGCAGAGGGCAAAGCTCCAGTGC +
Preference number: 6 (lower is better)
Translates to: WLPSSDGTGSRC*HRCWQRAKLQC
Trigger: GCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGACTTCCTGTCCCATCACTTGAAGGAAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CAA 72 bp GGGAGTAGCTTAGGGTCTGGGTTCTCCATAGACAGCTaGGAGCCACACCACATTCGCATGTACCCACTGTCT +
Preference number: 6 (lower is better)
Translates to: GSSLGSGFSIDS*EPHHIRMYPLS
Trigger: AGACAGTGGGTACATGCGAATGTGGTGTGGCTCCAAGCTGTCTATGGAGAACCCAGACCCTAAGCTACTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp CTTGTGAGAACCAATCTCAATGTCTCCATAGTCCTCTaGGTAAGGGTTGTAGGCCACTTTGGGAGAGGACGC +
Preference number: 6 (lower is better)
Translates to: LVRTNLNVSIVL*VRVVGHFGRGR
Trigger: GCGTCCTCTCCCAAAGTGGCCTACAACCCTTACCCAGAGGACTATGGAGACATTGAGATTGGTTCTCACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp TTCCTGAGTGAGACATTTTCCACAGAGGCCGAATTGTaGCGCTTGGAATTGTGGGCAAAGGATGGGGACACT +
Preference number: 6 (lower is better)
Translates to: FLSETFSTEAEL*RLELWAKDGDT
Trigger: AGTGTCCCCATCCTTTGCCCACAATTCCAAGCGCCACAATTCGGCCTCTGTGGAAAATGTCTCACTCAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS GCA 72 bp TCATGGGCATGTAGCCATCATCTGCCCCCAGGTTACTaGTGGAACTCTTGTGAGAACCAATCTCAATGTCTC +
Preference number: 6 (lower is better)
Translates to: SWACSHHLPPGY*WNSCENQSQCL
Trigger: GAGACATTGAGATTGGTTCTCACAAGAGTTCCAGCAGTAACCTGGGGGCAGATGATGGCTACATGCCCATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8
CDS CCA 72 bp TGGGCATGTAGCCATCATCTGCCCCCAGGTTACTGCTaGAACTCTTGTGAGAACCAATCTCAATGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: WACSHHLPPGYC*NSCENQSQCLH
Trigger: ATGGAGACATTGAGATTGGTTCTCACAAGAGTTCCAGCAGTAACCTGGGGGCAGATGATGGCTACATGCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040514.8