RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IRGC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062028

Ensembl transcript IDs: ENSMUST00000080594.8, ENSMUST00000205385.2, ENSMUST00000205776.2

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GGTGCGGGTAGGGCGAAGGCTGCATGGTGGTCTCCACGACCCCAGTaGGAGCTGCGCCAGGATCCTCGGCCCCCAGGCCGCGTAGGGCAT +
Preference number: 5 (lower is better)
Translates to: GAGRAKAAWWSPRPQ*ELRQDPRPPGRVGH
Trigger: ATGCCCTACGCGGCCTGGGGGCCGAGGATCCTGGCGCAGCTCTCACTGGGGTCGTGGAGACCACCATGCAGCCTTCGCCCTACCCGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp TGCAGAGCCTCCAGCGAGATGTCAGGCAGGGACAGCAGACCGGCGTaGCGACGGTGGGCGGGCAGGTCGTGCTCCCAGGTGGTCACGAGC +
Preference number: 5 (lower is better)
Translates to: CRASSEMSGRDSRPA*RRWAGRSCSQVVTS
Trigger: GCTCGTGACCACCTGGGAGCACGACCTGCCCGCCCACCGTCGCCACGCCGGTCTGCTGTCCCTGCCTGACATCTCGCTGGAGGCTCTGCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp CGGAGCGCAGGTCCCCTGCCTGTTTGCCCACCTGCTCGGCCAGCTTaGCCAGCGAGTCGTCGTCTAGGCCGAAGCTGCGGTGGTAGCCCC +
Preference number: 5 (lower is better)
Translates to: RSAGPLPVCPPARPA*PASRRLGRSCGGSP
Trigger: GGGGCTACCACCGCAGCTTCGGCCTAGACGACGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGGGACCTGCGCTCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 90 bp TACCCGCAGCCGCTCCGTGCAGTGATCTCGGATCTCCTGGAGGACTaGAGCCTCGCTGAAACCCGAGGGCCTCTGGCTGCGGGTGGCCGC +
Preference number: 5 (lower is better)
Translates to: YPQPLRAVISDLLED*SLAETRGPLAAGGR
Trigger: GCGGCCACCCGCAGCCAGAGGCCCTCGGGTTTCAGCGAGGCTGCAGTCCTCCAGGAGATCCGAGATCACTGCACGGAGCGGCTGCGGGTA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 90 bp GGGGAGCGGATGACGGAGCGCAGGTCCCCTGCCTGTTTGCCCACCTaGTCGGCCAGCTTGGCCAGCGAGTCGTCGTCTAGGCCGAAGCTG +
Preference number: 5 (lower is better)
Translates to: GERMTERRSPACLPT*SASLASESSSRPKL
Trigger: CAGCTTCGGCCTAGACGACGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGGGACCTGCGCTCCGTCATCCGCTCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp GCAGACCGGCGTGGCGACGGTGGGCGGGCAGGTCGTGCTCCCAGGTaGTCACGAGCATCGGGAAGTCATAGCGGGTTGGCGACAGGTTGG +
Preference number: 5 (lower is better)
Translates to: ADRRGDGGRAGRAPR*SRASGSHSGLATGW
Trigger: CCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGGGAGCACGACCTGCCCGCCCACCGTCGCCACGCCGGTCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp TCCAGCGAGATGTCAGGCAGGGACAGCAGACCGGCGTGGCGACGGTaGGCGGGCAGGTCGTGCTCCCAGGTGGTCACGAGCATCGGGAAG +
Preference number: 5 (lower is better)
Translates to: SSEMSGRDSRPAWRR*AGRSCSQVVTSIGK
Trigger: CTTCCCGATGCTCGTGACCACCTGGGAGCACGACCTGCCCGCCCACCGTCGCCACGCCGGTCTGCTGTCCCTGCCTGACATCTCGCTGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 90 bp GGCTCCCGACTCACCCGTGACGCCCACTTCCAGCCGGGTGGTCTCTaGGTTGGCCAGCAGCTCCCGAAGGCGAGAGGCGGCTTGAGGGAT +
Preference number: 5 (lower is better)
Translates to: GSRLTRDAHFQPGGL*VGQQLPKARGGLRD
Trigger: ATCCCTCAAGCCGCCTCTCGCCTTCGGGAGCTGCTGGCCAACTCAGAGACCACCCGGCTGGAAGTGGGCGTCACGGGTGAGTCGGGAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS CCA 90 bp CGGATCTCCTGGAGGACTGCAGCCTCGCTGAAACCCGAGGGCCTCTaGCTGCGGGTGGCCGCCAGATCCTCGTCCACCTTGGTGCGCACA +
Preference number: 5 (lower is better)
Translates to: RISWRTAASLKPEGL*LRVAARSSSTLVRT
Trigger: TGTGCGCACCAAGGTGGACGAGGATCTGGCGGCCACCCGCAGCCAGAGGCCCTCGGGTTTCAGCGAGGCTGCAGTCCTCCAGGAGATCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 90 bp GTGGTCTCTGAGTTGGCCAGCAGCTCCCGAAGGCGAGAGGCGGCTTaGGGGATGTCGCCAGACTCAAAAGCAGTGCGCAGGGCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: VVSELASSSRRREAA*GMSPDSKAVRRASS
Trigger: GCTGGAGGCCCTGCGCACTGCTTTTGAGTCTGGCGACATCCCTCAAGCCGCCTCTCGCCTTCGGGAGCTGCTGGCCAACTCAGAGACCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS TCA 90 bp ATGCGGGGATCATTCACACCCGCTACCCGCAGCCGCTCCGTGCAGTaGTCTCGGATCTCCTGGAGGACTGCAGCCTCGCTGAAACCCGAG +
Preference number: 5 (lower is better)
Translates to: MRGSFTPATRSRSVQ*SRISWRTAASLKPE
Trigger: CTCGGGTTTCAGCGAGGCTGCAGTCCTCCAGGAGATCCGAGATCACTGCACGGAGCGGCTGCGGGTAGCGGGTGTGAATGATCCCCGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 90 bp TCGGGAAGTCATAGCGGGTTGGCGACAGGTTGGACACCAGGAAGATaGGGGGATCATTCACACCCGCTACCCGCAGCCGCTCCGTGCAGT +
Preference number: 5 (lower is better)
Translates to: SGSHSGLATGWTPGR*GDHSHPLPAAAPCS
Trigger: ACTGCACGGAGCGGCTGCGGGTAGCGGGTGTGAATGATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 90 bp CAGACTCAAAAGCAGTGCGCAGGGCCTCCAGCTCTTCCTTGGCCATaGGGATGGTGGTCTCCTCAGGCACGGCGGGCAACCTGGAAGTTG +
Preference number: 5 (lower is better)
Translates to: QTQKQCAGPPALPWP*GWWSPQARRATWKL
Trigger: CAACTTCCAGGTTGCCCGCCGTGCCTGAGGAGACCACCATCCTCATGGCCAAGGAAGAGCTGGAGGCCCTGCGCACTGCTTTTGAGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS GCA 90 bp AGGGCCTCTGGCTGCGGGTGGCCGCCAGATCCTCGTCCACCTTGGTaGGCACAAAGTAAAACTTCTTCCCCTGGCGCAGGATCTCAGAAG +
Preference number: 5 (lower is better)
Translates to: RASGCGWPPDPRPPW*AQSKTSSPGAGSQK
Trigger: CTTCTGAGATCCTGCGCCAGGGGAAGAAGTTTTACTTTGTGCGCACCAAGGTGGACGAGGATCTGGCGGCCACCCGCAGCCAGAGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp AGGTGGTCACGAGCATCGGGAAGTCATAGCGGGTTGGCGACAGGTTaGACACCAGGAAGATGCGGGGATCATTCACACCCGCTACCCGCA +
Preference number: 5 (lower is better)
Translates to: RWSRASGSHSGLATG*TPGRCGDHSHPLPA
Trigger: TGCGGGTAGCGGGTGTGAATGATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp GTCGTGCTCCCAGGTGGTCACGAGCATCGGGAAGTCATAGCGGGTTaGCGACAGGTTGGACACCAGGAAGATGCGGGGATCATTCACACC +
Preference number: 5 (lower is better)
Translates to: VVLPGGHEHREVIAG*RQVGHQEDAGIIHT
Trigger: GGTGTGAATGATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGGGAGCACGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 90 bp TGCCGAAAACAGGGATGCCCCTCTCAAAGGCACGGGCCACCCGCATaGCACCATCTGAGGACTGCGAGTAGAGTCTCAGGACAGTCTCTG +
Preference number: 5 (lower is better)
Translates to: CRKQGCPSQRHGPPA*HHLRTASRVSGQSL
Trigger: CAGAGACTGTCCTGAGACTCTACTCGCAGTCCTCAGATGGTGCCATGCGGGTGGCCCGTGCCTTTGAGAGGGGCATCCCTGTTTTCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 90 bp TGTCTTCTGACAAGTCGCGCCTCTTCCAGCTGTCAAGAATATACTTaGGGAGGAGGCCGAGCTTCCTGCGGGTGGACAGCGGGGCTTCCT +
Preference number: 5 (lower is better)
Translates to: CLLTSRASSSCQEYT*GGGRASCGWTAGLP
Trigger: AGGAAGCCCCGCTGTCCACCCGCAGGAAGCTCGGCCTCCTCCTCAAGTATATTCTTGACAGCTGGAAGAGGCGCGACTTGTCAGAAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 90 bp AAGGCAGTCTTAAGCACCTGCTCTTGTAGCATGTCCTTCTTCTTCTaGAGAGCCTCCAGCGAGATGTCAGGCAGGGACAGCAGACCGGCG +
Preference number: 5 (lower is better)
Translates to: KAVLSTCSCSMSFFF*RASSEMSGRDSRPA
Trigger: CGCCGGTCTGCTGTCCCTGCCTGACATCTCGCTGGAGGCTCTGCAGAAGAAGAAGGACATGCTACAAGAGCAGGTGCTTAAGACTGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 72 bp ATGTCAGGCAGGGACAGCAGACCGGCGTGGCGACGGTaGGCGGGCAGGTCGTGCTCCCAGGTGGTCACGAGC +
Preference number: 6 (lower is better)
Translates to: MSGRDSRPAWRR*AGRSCSQVVTS
Trigger: GCTCGTGACCACCTGGGAGCACGACCTGCCCGCCCACCGTCGCCACGCCGGTCTGCTGTCCCTGCCTGACAT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 72 bp TCCAGCGAGATGTCAGGCAGGGACAGCAGACCGGCGTaGCGACGGTGGGCGGGCAGGTCGTGCTCCCAGGTG +
Preference number: 6 (lower is better)
Translates to: SSEMSGRDSRPA*RRWAGRSCSQV
Trigger: CACCTGGGAGCACGACCTGCCCGCCCACCGTCGCCACGCCGGTCTGCTGTCCCTGCCTGACATCTCGCTGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 72 bp GGGGAGCGGATGACGGAGCGCAGGTCCCCTGCCTGTTaGCCCACCTGCTCGGCCAGCTTGGCCAGCGAGTCG +
Preference number: 6 (lower is better)
Translates to: GERMTERRSPAC*PTCSASLASES
Trigger: CGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGGGACCTGCGCTCCGTCATCCGCTCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 90 bp GGATCCTCGGCCCCCAGGCCGCGTAGGGCATTGATGAGGGAGGACTaGCCGGCTCCCGACTCACCCGTGACGCCCACTTCCAGCCGGGTG +
Preference number: 6 (lower is better)
Translates to: GSSAPRPRRALMRED*PAPDSPVTPTSSRV
Trigger: CACCCGGCTGGAAGTGGGCGTCACGGGTGAGTCGGGAGCCGGCAAGTCCTCCCTCATCAATGCCCTACGCGGCCTGGGGGCCGAGGATCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS TCA 72 bp CTCACCCGTGACGCCCACTTCCAGCCGGGTGGTCTCTaGGTTGGCCAGCAGCTCCCGAAGGCGAGAGGCGGC +
Preference number: 6 (lower is better)
Translates to: LTRDAHFQPGGL*VGQQLPKARGG
Trigger: GCCGCCTCTCGCCTTCGGGAGCTGCTGGCCAACTCAGAGACCACCCGGCTGGAAGTGGGCGTCACGGGTGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS CCA 72 bp CGTGGCGACGGTGGGCGGGCAGGTCGTGCTCCCAGGTaGTCACGAGCATCGGGAAGTCATAGCGGGTTGGCG +
Preference number: 6 (lower is better)
Translates to: RGDGGRAGRAPR*SRASGSHSGLA
Trigger: CGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGGGAGCACGACCTGCCCGCCCACCGTCGCCACG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 72 bp GCCCCCAGGCCGCGTAGGGCATTGATGAGGGAGGACTaGCCGGCTCCCGACTCACCCGTGACGCCCACTTCC +
Preference number: 6 (lower is better)
Translates to: APRPRRALMRED*PAPDSPVTPTS
Trigger: GGAAGTGGGCGTCACGGGTGAGTCGGGAGCCGGCAAGTCCTCCCTCATCAATGCCCTACGCGGCCTGGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS CCA 72 bp TGGAGGACTGCAGCCTCGCTGAAACCCGAGGGCCTCTaGCTGCGGGTGGCCGCCAGATCCTCGTCCACCTTG +
Preference number: 6 (lower is better)
Translates to: WRTAASLKPEGL*LRVAARSSSTL
Trigger: CAAGGTGGACGAGGATCTGGCGGCCACCCGCAGCCAGAGGCCCTCGGGTTTCAGCGAGGCTGCAGTCCTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 72 bp GGTCCCCTGCCTGTTTGCCCACCTGCTCGGCCAGCTTaGCCAGCGAGTCGTCGTCTAGGCCGAAGCTGCGGT +
Preference number: 6 (lower is better)
Translates to: GPLPVCPPARPA*PASRRLGRSCG
Trigger: ACCGCAGCTTCGGCCTAGACGACGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGGGACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 72 bp CCGCTCCGTGCAGTGATCTCGGATCTCCTGGAGGACTaGAGCCTCGCTGAAACCCGAGGGCCTCTGGCTGCG +
Preference number: 6 (lower is better)
Translates to: PLRAVISDLLED*SLAETRGPLAA
Trigger: CGCAGCCAGAGGCCCTCGGGTTTCAGCGAGGCTGCAGTCCTCCAGGAGATCCGAGATCACTGCACGGAGCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 72 bp ATGACGGAGCGCAGGTCCCCTGCCTGTTTGCCCACCTaGTCGGCCAGCTTGGCCAGCGAGTCGTCGTCTAGG +
Preference number: 6 (lower is better)
Translates to: MTERRSPACLPT*SASLASESSSR
Trigger: CCTAGACGACGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGGGACCTGCGCTCCGTCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 72 bp AAGCAGTGCGCAGGGCCTCCAGCTCTTCCTTGGCCATaGGGATGGTGGTCTCCTCAGGCACGGCGGGCAACC +
Preference number: 6 (lower is better)
Translates to: KQCAGPPALPWP*GWWSPQARRAT
Trigger: GGTTGCCCGCCGTGCCTGAGGAGACCACCATCCTCATGGCCAAGGAAGAGCTGGAGGCCCTGCGCACTGCTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS TCA 72 bp GAGTTGGCCAGCAGCTCCCGAAGGCGAGAGGCGGCTTaGGGGATGTCGCCAGACTCAAAAGCAGTGCGCAGG +
Preference number: 6 (lower is better)
Translates to: ELASSSRRREAA*GMSPDSKAVRR
Trigger: CCTGCGCACTGCTTTTGAGTCTGGCGACATCCCTCAAGCCGCCTCTCGCCTTCGGGAGCTGCTGGCCAACTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS TCA 72 bp TCATTCACACCCGCTACCCGCAGCCGCTCCGTGCAGTaGTCTCGGATCTCCTGGAGGACTGCAGCCTCGCTG +
Preference number: 6 (lower is better)
Translates to: SFTPATRSRSVQ*SRISWRTAASL
Trigger: CAGCGAGGCTGCAGTCCTCCAGGAGATCCGAGATCACTGCACGGAGCGGCTGCGGGTAGCGGGTGTGAATGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 72 bp GACAGCCCTGGAGCATGGTGTAGACCGTGCCGAAGCTaGTACCCCCGGCCACCAGCGTGCCGAAAACAGGGA +
Preference number: 6 (lower is better)
Translates to: DSPGAWCRPCRS*YPRPPACRKQG
Trigger: TCCCTGTTTTCGGCACGCTGGTGGCCGGGGGTATCAGCTTCGGCACGGTCTACACCATGCTCCAGGGCTGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 72 bp GGGGATCATTCACACCCGCTACCCGCAGCCGCTCCGTaGAGTGATCTCGGATCTCCTGGAGGACTGCAGCCT +
Preference number: 6 (lower is better)
Translates to: GDHSHPLPAAAP*SDLGSPGGLQP
Trigger: AGGCTGCAGTCCTCCAGGAGATCCGAGATCACTGCACGGAGCGGCTGCGGGTAGCGGGTGTGAATGATCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 90 bp ATGTCGCCAGACTCAAAAGCAGTGCGCAGGGCCTCCAGCTCTTCCTaGGCCATGAGGATGGTGGTCTCCTCAGGCACGGCGGGCAACCTG +
Preference number: 6 (lower is better)
Translates to: MSPDSKAVRRASSSS*AMRMVVSSGTAGNL
Trigger: CAGGTTGCCCGCCGTGCCTGAGGAGACCACCATCCTCATGGCCAAGGAAGAGCTGGAGGCCCTGCGCACTGCTTTTGAGTCTGGCGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS GCA 72 bp GGCTGCGGGTGGCCGCCAGATCCTCGTCCACCTTGGTaGGCACAAAGTAAAACTTCTTCCCCTGGCGCAGGA +
Preference number: 6 (lower is better)
Translates to: GCGWPPDPRPPW*AQSKTSSPGAG
Trigger: TCCTGCGCCAGGGGAAGAAGTTTTACTTTGTGCGCACCAAGGTGGACGAGGATCTGGCGGCCACCCGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS GCA 72 bp CATAGCGGGTTGGCGACAGGTTGGACACCAGGAAGATaGGGGGATCATTCACACCCGCTACCCGCAGCCGCT +
Preference number: 6 (lower is better)
Translates to: HSGLATGWTPGR*GDHSHPLPAAA
Trigger: AGCGGCTGCGGGTAGCGGGTGTGAATGATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 72 bp GACTCAAAAGCAGTGCGCAGGGCCTCCAGCTCTTCCTaGGCCATGAGGATGGTGGTCTCCTCAGGCACGGCG +
Preference number: 6 (lower is better)
Translates to: DSKAVRRASSSS*AMRMVVSSGTA
Trigger: CGCCGTGCCTGAGGAGACCACCATCCTCATGGCCAAGGAAGAGCTGGAGGCCCTGCGCACTGCTTTTGAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080594.8
ENSMUST00000205385.2
ENSMUST00000205776.2
CDS CCA 72 bp CCAGGTGGTCACGAGCATCGGGAAGTCATAGCGGGTTaGCGACAGGTTGGACACCAGGAAGATGCGGGGATC +
Preference number: 6 (lower is better)
Translates to: PGGHEHREVIAG*RQVGHQEDAGI
Trigger: GATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 72 bp GGCTCATCTTCCTCCAGGGCTTTGATGCGGACGCGTTaGGCGTCCTCAGCCATCTCATTGAGACAGCCCTGG +
Preference number: 6 (lower is better)
Translates to: GSSSSRALMRTR*ASSAISLRQPW
Trigger: CCAGGGCTGTCTCAATGAGATGGCTGAGGACGCCCAACGCGTCCGCATCAAAGCCCTGGAGGAAGATGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 72 bp CCCAGGTGGTCACGAGCATCGGGAAGTCATAGCGGGTaGGCGACAGGTTGGACACCAGGAAGATGCGGGGAT +
Preference number: 6 (lower is better)
Translates to: PRWSRASGSHSG*ATGWTPGRCGD
Trigger: ATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 72 bp GGGCTCATCTTCCTCCAGGGCTTTGATGCGGACGCGTaGGGCGTCCTCAGCCATCTCATTGAGACAGCCCTG +
Preference number: 6 (lower is better)
Translates to: GLIFLQGFDADA*GVLSHLIETAL
Trigger: CAGGGCTGTCTCAATGAGATGGCTGAGGACGCCCAACGCGTCCGCATCAAAGCCCTGGAGGAAGATGAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 90 bp GGTCGTGCTCCCAGGTGGTCACGAGCATCGGGAAGTCATAGCGGGTaGGCGACAGGTTGGACACCAGGAAGATGCGGGGATCATTCACAC +
Preference number: 6 (lower is better)
Translates to: GRAPRWSRASGSHSG*ATGWTPGRCGDHSH
Trigger: GTGTGAATGATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGGGAGCACGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CCA 72 bp CGAGCATCGGGAAGTCATAGCGGGTTGGCGACAGGTTaGACACCAGGAAGATGCGGGGATCATTCACACCCG +
Preference number: 6 (lower is better)
Translates to: RASGSHSGLATG*TPGRCGDHSHP
Trigger: CGGGTGTGAATGATCCCCGCATCTTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 90 bp TTGTCTTCTGACAAGTCGCGCCTCTTCCAGCTGTCAAGAATATACTaGAGGAGGAGGCCGAGCTTCCTGCGGGTGGACAGCGGGGCTTCC +
Preference number: 6 (lower is better)
Translates to: LSSDKSRLFQLSRIY*RRRPSFLRVDSGAS
Trigger: GGAAGCCCCGCTGTCCACCCGCAGGAAGCTCGGCCTCCTCCTCAAGTATATTCTTGACAGCTGGAAGAGGCGCGACTTGTCAGAAGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS TCA 72 bp ACAAGTCGCGCCTCTTCCAGCTGTCAAGAATATACTTaGGGAGGAGGCCGAGCTTCCTGCGGGTGGACAGCG +
Preference number: 6 (lower is better)
Translates to: TSRASSSCQEYT*GGGRASCGWTA
Trigger: CGCTGTCCACCCGCAGGAAGCTCGGCCTCCTCCTCAAGTATATTCTTGACAGCTGGAAGAGGCGCGACTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2
CDS CAA 72 bp GACAAGTCGCGCCTCTTCCAGCTGTCAAGAATATACTaGAGGAGGAGGCCGAGCTTCCTGCGGGTGGACAGC +
Preference number: 6 (lower is better)
Translates to: DKSRLFQLSRIY*RRRPSFLRVDS
Trigger: GCTGTCCACCCGCAGGAAGCTCGGCCTCCTCCTCAAGTATATTCTTGACAGCTGGAAGAGGCGCGACTTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080594.8
ENSMUST00000205776.2