RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IRF9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002325

Ensembl transcript IDs: ENSMUST00000130697.8, ENSMUST00000134863.8, ENSMUST00000138037.2, ENSMUST00000226275.2

Found 273 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATaGAGACGCGACGATCAGTGTCCCAGAGCAGAGGGTGACTGCTCT +
Preference number: 1 (lower is better)
Translates to: TEAGRPRVWRTSLFP*RRDDQCPRAEGDCS
Trigger: AGAGCAGTCACCCTCTGCTCTGGGACACTGATCGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR GCA 90 bp TTCTCCTCTTCTGGAATCTTCTCCAGTAAATGTCGGGCAAAGGCCTaGTCCATCTGTACAAGAGGAAGTGAGGCGCAGGCTGCAGTGAGC +
Preference number: 1 (lower is better)
Translates to: FSSSGIFSSKCRAKA*SICTRGSEAQAAVS
Trigger: GCTCACTGCAGCCTGCGCCTCACTTCCTCTTGTACAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGAAGAGGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR GCA 90 bp AGACGCGACGATCAGTGTCCCAGAGCAGAGGGTGACTGCTCTGTGTaGTGTAACAGGAACAAGGCAGCTTTCTCCTCTTCTGGAATCTTC +
Preference number: 1 (lower is better)
Translates to: RRDDQCPRAEGDCSV*CNRNKAAFSSSGIF
Trigger: GAAGATTCCAGAAGAGGAGAAAGCTGCCTTGTTCCTGTTACAGCACACAGAGCAGTCACCCTCTGCTCTGGGACACTGATCGTCGCGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR GCA 90 bp TTTCCATGGAGACGCGACGATCAGTGTCCCAGAGCAGAGGGTGACTaGTCTGTGTGCTGTAACAGGAACAAGGCAGCTTTCTCCTCTTCT +
Preference number: 1 (lower is better)
Translates to: FPWRRDDQCPRAEGD*SVCCNRNKAAFSSS
Trigger: AGAAGAGGAGAAAGCTGCCTTGTTCCTGTTACAGCACACAGAGCAGTCACCCTCTGCTCTGGGACACTGATCGTCGCGTCTCCATGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR CCA 90 bp CACACGGTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTaGAGAACAAGTCTATTTCCATGGAGACGCGACGATCAGTGTCCC +
Preference number: 1 (lower is better)
Translates to: HTVIRTITEAGRPRV*RTSLFPWRRDDQCP
Trigger: GGGACACTGATCGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCACCGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR TCA 90 bp CTAGGAATGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTaGCACAACTCAACCAACAACCCCACACCTCTAGTCATCCCAAGT +
Preference number: 1 (lower is better)
Translates to: LGMARVFGNLKAHGQ*HNSTNNPTPLVIPS
Trigger: ACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCATTCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR CCA 90 bp CAGAAGAGGGTGTCTGAAGACAGGTGTGAGCAACCATGTGGTTGCTaGGATTTGAACTCAGGATCTTCAGAAGGGCAGTCAGTGCTCTTA +
Preference number: 1 (lower is better)
Translates to: QKRVSEDRCEQPCGC*DLNSGSSEGQSVLL
Trigger: TAAGAGCACTGACTGCCCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTTGCTCACACCTGTCTTCAGACACCCTCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR TCA 90 bp AGCAGGAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTaGCTTATAAGCATGAGACACAGAGAGAGTGTGCTAGCTAGGAAT +
Preference number: 1 (lower is better)
Translates to: SRRQASMELRLRVYI*LISMRHRESVLARN
Trigger: ATTCCTAGCTAGCACACTCTCTCTGTGTCTCATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTCCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR CCA 90 bp GCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTaGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGAAGC +
Preference number: 1 (lower is better)
Translates to: ANSICKEKHHPCTFS*PCWITHGDKNHHRS
Trigger: GCTTCTGTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR CCA 90 bp GGAGATAAAAGTCTCTTCCAGGTTGTCTTTGAGCTCATAACCATTTaGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGT +
Preference number: 1 (lower is better)
Translates to: GDKSLFQVVFELITI*SVFQVLRLQVSSTS
Trigger: ACTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGACAACCTGGAAGAGACTTTTATCTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR GCA 90 bp ATTTTATTTCAGTCTAGTGAGGACTGGGAGATAAAATATATAAAGTaGTTAGATTTAGAGTTTGGGACTGGGAGGAGCATACAATTCCCT +
Preference number: 1 (lower is better)
Translates to: ILFQSSEDWEIKYIK*LDLEFGTGRSIQFP
Trigger: AGGGAATTGTATGCTCCTCCCAGTCCCAAACTCTAAATCTAAGCACTTTATATATTTTATCTCCCAGTCCTCACTAGACTGAAATAAAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR TCA 90 bp CCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGATCAGTGAGGCGCAGGCTGCAGTaGGCACTGCGGGGACAGCCA +
Preference number: 2 (lower is better)
Translates to: PTKSVENKSISMETRRSVRRRLQ*ALRGQP
Trigger: TGGCTGTCCCCGCAGTGCTCACTGCAGCCTGCGCCT...CACTGATCGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR-3UTR GCA 90 bp CCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGGCTGCAGTGAGCACTaGGGGGACAGCCACCACCCT +
Preference number: 2 (lower is better)
Translates to: PSQKQADQECGEQVYFHGGCSEH*GDSHHP
Trigger: AGGGTGGTGGCTGTCCCCGCAGTGCTCACTGCAGCC...TCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR-3UTR GCA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTGGACAGCCACCACCCTaGGGCCCCTTCCCCTCAGGG +
Preference number: 2 (lower is better)
Translates to: KSASQTQFVRRNITLALSGQPPP*GPFPSG
Trigger: CCCTGAGGGGAAGGGGCCGCAGGGTGGTGGCTGTCC...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR-3UTR TCA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGAAAGCCCATGGCCAGTaGCACAACTCAACCAACAAC +
Preference number: 2 (lower is better)
Translates to: LGSMTITTENKAGGRQAWKAHGQ*HNSTNN
Trigger: GTTGTTGGTTGAGTTGTGTCACTGGCCATGGGCTTT...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CCA 90 bp CAGCTTTCTCCTCTTCTGGAATCTTCTCCAGTAAATGTCGGGCAAAGGCCTGCTGGCCGACCAAGAGTGTaGAGAACAAGTCTATTTCCA +
Preference number: 2 (lower is better)
Translates to: QLSPLLESSPVNVGQRPAGRPRV*RTSLFP
Trigger: TGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCC...AGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGAAGAGGAGAAAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR-3UTR CCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAACAACCATGTGGTTGCTaGGATTTGAACTCAGGATCT +
Preference number: 2 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQQPCGC*DLNSGS
Trigger: AGATCCTGAGTTCAAATCCCAGCAACCACATGGTTG...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR GCA 90 bp CAGGTTGTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTATGTCGGGCAAAGGCCTaGTCCATCTGTACAAGAGGA +
Preference number: 2 (lower is better)
Translates to: QVVFELITIWSVFQVLRLCRAKA*SICTRG
Trigger: TCCTCTTGTACAGATGGAGCAGGCCTTTGCCCGACA...TAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGACAACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR-3UTR CCA 90 bp TCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCCCTTGCACTTTCTCTTaGCCATGCTGGATAACACAC +
Preference number: 2 (lower is better)
Translates to: SQSSCLLSHMCQLCNTSPPCTFS*PCWITH
Trigger: GTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGG...GGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAATGGAGGCTGATCTCTaGCCCAAAGAGTTATTTATT +
Preference number: 2 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQMEADL*PKELFI
Trigger: AATAAATAACTCTTTGGGCCAGAGATCAGCCTCCAT...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR TCA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGTTGAGAGTTTACATCTaGCTTATAAGCATGAGACAC +
Preference number: 2 (lower is better)
Translates to: LGSMTITTENKAGGRQAWLRVYI*LISMRH
Trigger: GTGTCTCATGCTTATAAGTCAGATGTAAACTCTCAA...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR GCA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCACTCTTGTCTCACATGTaGCAACTATGTAATACCTCA +
Preference number: 2 (lower is better)
Translates to: WQGSLETLKPMASDTTQPLLSHM*QLCNTS
Trigger: TGAGGTATTACATAGTTGGCACATGTGAGACAAGAG...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CCA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACAGGCCGACCAAGAGTGTaGAGAACAAGTCTATTTCCA +
Preference number: 2 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITGRPRV*RTSLFP
Trigger: TGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCC...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR-3UTR TCA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGGCATACAATTCCCTCTaGGATCACACCCTTTGGAAC +
Preference number: 2 (lower is better)
Translates to: HNHLVCLPSAEITSILNKAYNSL*DHTLWN
Trigger: GTTCCAAAGGGTGTGATCTCAGAGGGAATTGTATGC...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CCA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACAGAGCTCATAACCATTTaGTCTGTCTTCCAAGTGCTG +
Preference number: 2 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITELITI*SVFQVL
Trigger: CAGCACTTGGAAGACAGACCAAATGGTTATGAGCTC...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR-3UTR CCA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTGGCCGACCAAGAGTGTaGAGAACAAGTCTATTTCCA +
Preference number: 2 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSGRPRV*RTSLFP
Trigger: TGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCC...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR TCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTCTGTCTTCCAAGTGCTaGGATTACAAGTATCCTCAA +
Preference number: 2 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCLSSKC*DYKYPQ
Trigger: TTGAGGATACTTGTAATCTCAGCACTTGGAAGACAG...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR TCA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTCTGTCTTCCAAGTGCTaGGATTACAAGTATCCTCAA +
Preference number: 2 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSLSSKC*DYKYPQ
Trigger: TTGAGGATACTTGTAATCTCAGCACTTGGAAGACAG...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR TCA 72 bp CCATCTGTACAAGAGGAAGTGAGGCGCAGGCTGCAGTaGGCACTGCGGGGACAGCCACCACCCTGCGGCCCC +
Preference number: 3 (lower is better)
Translates to: PSVQEEVRRRLQ*ALRGQPPPCGP
Trigger: GGGGCCGCAGGGTGGTGGCTGTCCCCGCAGTGCTCACTGCAGCCTGCGCCTCACTTCCTCTTGTACAGATGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR CCA 72 bp GGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATaGAGACGCGACGATCAGTGTCCCAGAGCAGAGGGT +
Preference number: 3 (lower is better)
Translates to: GRPRVWRTSLFP*RRDDQCPRAEG
Trigger: ACCCTCTGCTCTGGGACACTGATCGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR TCA 72 bp CAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTaGGGACCAAGTAGTCAACATGTGAGCGGATGGAGG +
Preference number: 3 (lower is better)
Translates to: QPHTSSHPKWFH*GPSSQHVSGWR
Trigger: CCTCCATCCGCTCACATGTTGACTACTTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR GCA 72 bp TCTGGAATCTTCTCCAGTAAATGTCGGGCAAAGGCCTaGTCCATCTGTACAAGAGGAAGTGAGGCGCAGGCT +
Preference number: 3 (lower is better)
Translates to: SGIFSSKCRAKA*SICTRGSEAQA
Trigger: AGCCTGCGCCTCACTTCCTCTTGTACAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR GCA 72 bp GATCAGTGTCCCAGAGCAGAGGGTGACTGCTCTGTGTaGTGTAACAGGAACAAGGCAGCTTTCTCCTCTTCT +
Preference number: 3 (lower is better)
Translates to: DQCPRAEGDCSV*CNRNKAAFSSS
Trigger: AGAAGAGGAGAAAGCTGCCTTGTTCCTGTTACAGCACACAGAGCAGTCACCCTCTGCTCTGGGACACTGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR GCA 72 bp AGGGTGTCTGAAGACAGGTGTGAGCAACCATGTGGTTaGTGGGATTTGAACTCAGGATCTTCAGAAGGGCAG +
Preference number: 3 (lower is better)
Translates to: RVSEDRCEQPCG*WDLNSGSSEGQ
Trigger: CTGCCCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTTGCTCACACCTGTCTTCAGACACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CAA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGCTGAGATCACACCCTTaGGAACTTTCCAGTTCCTTG +
Preference number: 3 (lower is better)
Translates to: LGSMTITTENKAGGRQAWLRSHP*ELSSSL
Trigger: CAAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAG...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR TCA 72 bp AAGACAGGTGTGAGCAACCATGTGGTTGCTGGGATTTaGACTCAGGATCTTCAGAAGGGCAGTCAGTGCTCT +
Preference number: 3 (lower is better)
Translates to: KTGVSNHVVAGI*TQDLQKGSQCS
Trigger: AGAGCACTGACTGCCCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTTGCTCACACCTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR CCA 72 bp GTGTCTGAAGACAGGTGTGAGCAACCATGTGGTTGCTaGGATTTGAACTCAGGATCTTCAGAAGGGCAGTCA +
Preference number: 3 (lower is better)
Translates to: VSEDRCEQPCGC*DLNSGSSEGQS
Trigger: TGACTGCCCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTTGCTCACACCTGTCTTCAGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR CCA 72 bp ATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTaGAGAACAAGTCTATTTCCATGGAGACGCGACGAT +
Preference number: 3 (lower is better)
Translates to: IRTITEAGRPRV*RTSLFPWRRDD
Trigger: ATCGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
3UTR-3UTR CAA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCAAGACTGGCCTTGAATTaGAACTCACAGTCTTCTTGC +
Preference number: 3 (lower is better)
Translates to: WQGSLETLKPMASDTTQPRLALN*NSQSSC
Trigger: GCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCT...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CAA 90 bp TCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATACCCTTGCACTTTCTCTaGGCCATGCTGGATAACACA +
Preference number: 3 (lower is better)
Translates to: SICKEKHHPCTFSWPCWIPLHFL*AMLDNT
Trigger: TGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGG...TATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR-3UTR CAA 90 bp GAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTGACTTATAAGCATAGACTGGCCTTGAATTaGAACTCACAGTCTTCTTGC +
Preference number: 3 (lower is better)
Translates to: EAGKHGAEVESLHLTYKHRLALN*NSQSSC
Trigger: GCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCT...ATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CAA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTCCCTTGCACTTTCTCTaGGCCATGCTGGATAACACA +
Preference number: 3 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCPLHFL*AMLDNT
Trigger: TGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGG...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CAA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGCCCTTGCACTTTCTCTaGGCCATGCTGGATAACACA +
Preference number: 3 (lower is better)
Translates to: HNHLVCLPSAEITSILNKPLHFL*AMLDNT
Trigger: TGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGG...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR-3UTR CAA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTCCCTTGCACTTTCTCTaGGCCATGCTGGATAACACA +
Preference number: 3 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSPLHFL*AMLDNT
Trigger: TGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGG...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CAA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGCTGAGATCACACCCTTaGGAACTTTCCAGTTCCTTG +
Preference number: 3 (lower is better)
Translates to: HNHLVCLPSAEITSILNKLRSHP*ELSSSL
Trigger: CAAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAG...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR CCA 72 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTaGCCATGCTGGATAACACACGGTGATAAGAACCAT +
Preference number: 3 (lower is better)
Translates to: ICKEKHHPCTFS*PCWITHGDKNH
Trigger: ATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR-3UTR CAA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTCAGTCTTCTTGCCTCTaGTCTCACATGTGCCAACTA +
Preference number: 3 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSQSSCL*SHMCQL
Trigger: TAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTG...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR-3UTR CAA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGGAACTTTCCAGTTCCTaGGAGCTGAGAGAGAATATA +
Preference number: 3 (lower is better)
Translates to: HNHLVCLPSAEITSILNKELSSS*ELRENI
Trigger: TATATTCTCTCTCAGCTCCAAGGAACTGGAAAGTTC...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR-3UTR CAA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTTCACCAAGACTGGCCTaGAATTTGAACTCACAGTCT +
Preference number: 3 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSSPRLA*NLNSQS
Trigger: AGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGA...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GGTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTAGGACCAGGCCCGGGTaGGGCCTCTGGTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: GDKNHHRSRPTKSVENKSRTRPG*GLWCIP
Trigger: TGGAATGCACCAGAGGCCCCACCCGGGCCTGGTCCT...AGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGGGGGGCCCCTGGCCCTaGAAGTACTGGGCCAAATCT +
Preference number: 4 (lower is better)
Translates to: HRSRPTKSVENKSISMETGGPWP*KYWAKS
Trigger: AGATTTGGCCCAGTACTTCCAGGGCCAGGGGCCCCC...CGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTGGGTGGGGGCCCCTaGCCCTGGAAGTACTGGGCC +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLLGGGP*PWKYWA
Trigger: GGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAA...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAATGCTTGGAACTTGGGTaGGGGCCCCTGGCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQCLELG*GPLALE
Trigger: TTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCA...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp GACAGTGTCACCAAGACTGGCCTTGAATTTGAACTCACAGTCTTCTTGCCTCTTTTGCTGGGCAGCAGATaGGGACCAGGCCCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: DSVTKTGLEFELTVFLPLLLGSR*GPGPGG
Trigger: CCCACCCGGGCCTGGTCCTCATCTGCTGCCCAGCAA...AAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGACACTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGGTCCCAGCACACCCCTaGGAAATGGCCACTCTCCAC +
Preference number: 4 (lower is better)
Translates to: LGSMTITTENKAGGRQAWVPAHP*EMATLH
Trigger: GTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGAC...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCTTGGGTGGGGGCCCCTaGCCCTGGAAGTACTGGGCC +
Preference number: 4 (lower is better)
Translates to: PQQVCLANSICKEKHHPCLGGGP*PWKYWA
Trigger: GGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAA...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR GCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAGAACATGGTCTTGGCTaGATCGTCCCAGCACACCCC +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQEHGLG*IVPAHP
Trigger: GGGGTGTGCTGGGACGATGCAGCCAAGACCATGTTC...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp AAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGTCCTGTTGCTGCCATTaGCACCACCGCCTATGTTGC +
Preference number: 4 (lower is better)
Translates to: KQADQECGEQVYFHGDATSCCCH*HHRLCC
Trigger: GCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGA...CGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GGTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTTGCTGTCGCTCCTGTTaGTGCCATTGCCACCACCGC +
Preference number: 4 (lower is better)
Translates to: GDKNHHRSRPTKSVENKSCCRSC*CHCHHR
Trigger: GCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCA...AGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGCGACAGTCTAGGCTGTaGACCTGGGTCTTACCCACC +
Preference number: 4 (lower is better)
Translates to: LGSMTITTENKAGGRQAWRQSRL*TWVLPT
Trigger: GGTGGGTAAGACCCAGGTGCACAGCCTAGACTGTCG...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGTCCCAGCACACCCCTaGGAAATGGCCACTCTCCAC +
Preference number: 4 (lower is better)
Translates to: PSQKQADQECGEQVYFHGVPAHP*EMATLH
Trigger: GTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGAC...TCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp AAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGTCCAGGAGATGGGGATaGGGCAAAGGCGCTGAACAA +
Preference number: 4 (lower is better)
Translates to: KQADQECGEQVYFHGDATSRRWG*GKGAEQ
Trigger: TTGTTCAGCGCCTTTGCCCCATCCCCATCTCCTGGA...CGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGGTGCATTCCAGGAGATaGGGATGGGGCAAAGGCGCT +
Preference number: 4 (lower is better)
Translates to: LGSMTITTENKAGGRQAWVHSRR*GWGKGA
Trigger: AGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCAC...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCCCCGGGTGGGGCCTCTaGTGCATTCCAGGAGATGGG +
Preference number: 4 (lower is better)
Translates to: PQQVCLANSICKEKHHPCPGWGL*CIPGDG
Trigger: CCCATCTCCTGGAATGCACCAGAGGCCCCACCCGGG...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTGACTTATAAGCATAGGACCAGGCCCGGGTaGGGCCTCTGGTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: EAGKHGAEVESLHLTYKHRTRPG*GLWCIP
Trigger: TGGAATGCACCAGAGGCCCCACCCGGGCCTGGTCCT...ATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CCTTGCACTTTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACGGGGGCCCCTGGCCCTaGAAGTACTGGGCCAAATCT +
Preference number: 4 (lower is better)
Translates to: PCTFSWPCWITHGDKNHHGGPWP*KYWAKS
Trigger: AGATTTGGCCCAGTACTTCCAGGGCCAGGGGCCCCC...GTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp GCTGTAACAGGAACAAGGCAGCTTTCTCCTCTTCTGGAATCTTCTCCAGTAAATTTGGGTGGGGGCCCCTaGCCCTGGAAGTACTGGGCC +
Preference number: 4 (lower is better)
Translates to: AVTGTRQLSPLLESSPVNLGGGP*PWKYWA
Trigger: GGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAA...ATTTACTGGAGAAGATTCCAGAAGAGGAGAAAGCTGCCTTGTTCCTGTTACAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATGCTTGGAACTTGGGTaGGGGCCCCTGGCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLCLELG*GPLALE
Trigger: TTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCA...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR TCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAATTCGGAACTCTTGTTaGGGGCACAGCGTAGGCGAG +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQIRNSC*GHSVGE
Trigger: CTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAAT...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAACGCCTCTGTCAAGCTaGTTCAGCAGGTGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQTPLSS*FSRCWV
Trigger: TACCCAGCACCTGCTGAATCAGCTTGACAGAGGCGT...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGAAGCAGGTGCTGTCGCTCCTGTTaGTGCCATTGCCACCACCGC +
Preference number: 4 (lower is better)
Translates to: FSWPCWITHGDKNHHRSRCCRSC*CHCHHR
Trigger: GCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCA...CCTGCTTCTGTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGACGACAGTCTAGGCTGTaGACCTGGGTCTTACCCACC +
Preference number: 4 (lower is better)
Translates to: PSQKQADQECGEQVYFHGRQSRL*TWVLPT
Trigger: GGTGGGTAAGACCCAGGTGCACAGCCTAGACTGTCG...TCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACATTGGGTGGGGGCCCCTaGCCCTGGAAGTACTGGGCC +
Preference number: 4 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITLGGGP*PWKYWA
Trigger: GGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAA...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCTGCTTGGAACTTGGGTaGGGGCCCCTGGCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: PQQVCLANSICKEKHHPCCLELG*GPLALE
Trigger: TTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCA...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR TCA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCAATTCGGAACTCTTGTTaGGGGCACAGCGTAGGCGAG +
Preference number: 4 (lower is better)
Translates to: WQGSLETLKPMASDTTQPIRNSC*GHSVGE
Trigger: CTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAAT...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAGAGTTCAGAGGAAGTTaGTGCTCCAGGAACACTGGG +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQEFRGS*CSRNTG
Trigger: CCCAGTGTTCCTGGAGCATCAACTTCCTCTGAACTC...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp ACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCTTGCTGGGCAGCAGATaGGGACCAGGCCCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: TSILNKSASQTQFVRRNILLGSR*GPGPGG
Trigger: CCCACCCGGGCCTGGTCCTCATCTGCTGCCCAGCAA...GATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp CAGGTTGTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTAGGGCAAGGGCGGAGCTaGAGAAATGGGCAGGGCCTG +
Preference number: 4 (lower is better)
Translates to: QVVFELITIWSVFQVLRLGQGRS*RNGQGL
Trigger: CAGGCCCTGCCCATTTCTTCAGCTCCGCCCTTGCCC...TAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGACAACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS-3UTR GCA 90 bp CACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGTCCTCTCGGAAGTCTTaGTTGCCTGCATGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: HRSRPTKSVENKSISMETSSRKS*LPACFQ
Trigger: CTGGAAGCATGCAGGCAAGCAAGACTTCCGAGAGGA...CGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCCCACCTGCTCCATGCTaGTCTCCGAGTCTGAGCGCT +
Preference number: 4 (lower is better)
Translates to: SQSSCLLSHMCQLCNTSPPPAPC*SPSLSA
Trigger: AGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGG...GGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGAAGCAGGACTCCACCTGCTCCATaGTGCTCTCCGAGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: FSWPCWITHGDKNHHRSRTPPAP*CSPSLS
Trigger: GCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGT...CCTGCTTCTGTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCGGGTGGGGCCTCTGGTaGATTCCAGGAGATGGGGAT +
Preference number: 4 (lower is better)
Translates to: PQQVCLANSICKEKHHPCGWGLW*IPGDGD
Trigger: ATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCC...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCATCCGGAACATGGTCTTaGCTGCATCGTCCCAGCACA +
Preference number: 4 (lower is better)
Translates to: WQGSLETLKPMASDTTQPSGTWS*LHRPST
Trigger: TGTGCTGGGACGATGCAGCCAAGACCATGTTCCGGA...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAATGCTCCAGGAACACTaGGTCCTCTCTAATGGTGGC +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQMLQEH*VLSNGG
Trigger: GCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCAT...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CAGGTTGTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACCCGGGTGGGGCCTCTaGTGCATTCCAGGAGATGGG +
Preference number: 4 (lower is better)
Translates to: QVVFELITIWSVFQVLRLPGWGL*CIPGDG
Trigger: CCCATCTCCTGGAATGCACCAGAGGCCCCACCCGGG...TAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGACAACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAAGGACCAGGCCCGGGTaGGGCCTCTGGTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: SICKEKHHPCTFSWPCWIRTRPG*GLWCIP
Trigger: TGGAATGCACCAGAGGCCCCACCCGGGCCTGGTCCT...TATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCGGGGGCCCCTGGCCCTaGAAGTACTGGGCCAAATCT +
Preference number: 4 (lower is better)
Translates to: ANSICKEKHHPCTFSWPCGGPWP*KYWAKS
Trigger: AGATTTGGCCCAGTACTTCCAGGGCCAGGGGCCCCC...GCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR TCA 90 bp CCTTGCACTTTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACATTCGGAACTCTTGTTaGGGGCACAGCGTAGGCGAG +
Preference number: 4 (lower is better)
Translates to: PCTFSWPCWITHGDKNHHIRNSC*GHSVGE
Trigger: CTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAAT...GTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTAATGGGGCAAAGGCGCTaGACAAAGAGGCCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLMGQRR*TKRPLE
Trigger: TTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCAT...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTTTGCTGGGCAGCAGATaGGGACCAGGCCCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSLLGSR*GPGPGG
Trigger: CCCACCCGGGCCTGGTCCTCATCTGCTGCCCAGCAA...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTGACTTATAAGCATGAACATGGTCTTGGCTaGATCGTCCCAGCACACCCC +
Preference number: 4 (lower is better)
Translates to: EAGKHGAEVESLHLTYKHEHGLG*IVPAHP
Trigger: GGGGTGTGCTGGGACGATGCAGCCAAGACCATGTTC...ATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GACAGTGTCACCAAGACTGGCCTTGAATTTGAACTCACAGTCTTCTTGCCTCTTACTCCACCTGCTCCATaGTGCTCTCCGAGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: DSVTKTGLEFELTVFLPLTPPAP*CSPSLS
Trigger: GCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGT...AAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGACACTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CCTTGCACTTTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACTTGGGAAACTCCACCTaGTCCATGCTGCTCTCCGAG +
Preference number: 4 (lower is better)
Translates to: PCTFSWPCWITHGDKNHHLGNST*SMLLSE
Trigger: CTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAA...GTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCGGGTGGGGCCTCTGGTaGATTCCAGGAGATGGGGAT +
Preference number: 4 (lower is better)
Translates to: QVCLANSICKEKHHPCTFGWGLW*IPGDGD
Trigger: ATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCC...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTGGAGCTGAGAGAGAATATGGGTGGGGCCTCTGGTaGATTCCAGGAGATGGGGAT +
Preference number: 4 (lower is better)
Translates to: SEITPFGTFQFLGAEREYGWGLW*IPGDGD
Trigger: ATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCC...ATATTCTCTCTCAGCTCCAAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATCCGGAACATGGTCTTaGCTGCATCGTCCCAGCACA +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLSGTWS*LHRPST
Trigger: TGTGCTGGGACGATGCAGCCAAGACCATGTTCCGGA...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp AAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGTTGCATGGTGATTTCTaGTTCCGTGGTTGGTTAGGG +
Preference number: 4 (lower is better)
Translates to: KQADQECGEQVYFHGDATLHGDF*FRGWLG
Trigger: CCCTAACCAACCACGGAACCAGAAATCACCATGCAA...CGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GGTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTCCACACACTTATTGCTaGGCAGCAGATGAGGACCAG +
Preference number: 4 (lower is better)
Translates to: GDKNHHRSRPTKSVENKSPHTYC*AADEDQ
Trigger: CTGGTCCTCATCTGCTGCCCAGCAATAAGTGTGTGG...AGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCACC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
3UTR CAA 72 bp GAAGACAGGTGTGAGCAACCATGTGGTTGCTGGGATTaGAACTCAGGATCTTCAGAAGGGCAGTCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: EDRCEQPCGCWD*NSGSSEGQSVL
Trigger: GAGCACTGACTGCCCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTTGCTCACACCTGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCATGGGGCAAAGGCGCTaGACAAAGAGGCCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: PQQVCLANSICKEKHHPCMGQRR*TKRPLE
Trigger: TTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCAT...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGAAGCAGGTCCTCTCGGAAGTCTTaGTTGCCTGCATGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: FSWPCWITHGDKNHHRSRSSRKS*LPACFQ
Trigger: CTGGAAGCATGCAGGCAAGCAAGACTTCCGAGAGGA...CCTGCTTCTGTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTGGAGCTGAGAGAGAATATTGGTGGCCTCAGTTGTaGCAGCTCCCTCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: SEITPFGTFQFLGAEREYWWPQL*QLPPLA
Trigger: AGCTAGAGGAGGGAGCTGGCACAACTGAGGCCACCA...ATATTCTCTCTCAGCTCCAAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTGGTGGCCTCAGTTGTaGCAGCTCCCTCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: QVCLANSICKEKHHPCTFWWPQL*QLPPLA
Trigger: AGCTAGAGGAGGGAGCTGGCACAACTGAGGCCACCA...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACACCACCTGCTCCATGCTaGTCTCCGAGTCTGAGCGCT +
Preference number: 4 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITPPAPC*SPSLSA
Trigger: AGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGG...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCTTGGGAAACTCCACCTaGTCCATGCTGCTCTCCGAG +
Preference number: 4 (lower is better)
Translates to: SQSSCLLSHMCQLCNTSPLGNST*SMLLSE
Trigger: CTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAA...GGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTAGCTCCACACACTTATTaGTGGGCAGCAGATGAGGAC +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLAPHTY*WAADED
Trigger: GTCCTCATCTGCTGCCCAGCAATAAGTGTGTGGAGC...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GACAGTGTCACCAAGACTGGCCTTGAATTTGAACTCACAGTCTTCTTGCCTCTTAGGGAATCCGGAACATaGTCTTGGCTGCATCGTCCC +
Preference number: 4 (lower is better)
Translates to: DSVTKTGLEFELTVFLPLRESGT*SWLHRP
Trigger: GGGACGATGCAGCCAAGACCATGTTCCGGATTCCCT...AAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGACACTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTGACTTATAAGCATAGGGAATCCGGAACATaGTCTTGGCTGCATCGTCCC +
Preference number: 4 (lower is better)
Translates to: EAGKHGAEVESLHLTYKHRESGT*SWLHRP
Trigger: GGGACGATGCAGCCAAGACCATGTTCCGGATTCCCT...ATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCACTGCCACTGTCTGAGTaGTTTACAACGCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: WQGSLETLKPMASDTTQPLPLSE*FTTPLV
Trigger: GACCAATGGCGTTGTAAACCACTCAGACAGTGGCAG...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCCCGGGTGGGGCCTCTaGTGCATTCCAGGAGATGGG +
Preference number: 4 (lower is better)
Translates to: YKYPQQVCLANSICKEKHPGWGL*CIPGDG
Trigger: CCCATCTCCTGGAATGCACCAGAGGCCCCACCCGGG...ATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp AAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACGGGGGCCCCTGGCCCTaGAAGTACTGGGCCAAATCT +
Preference number: 4 (lower is better)
Translates to: KYPQQVCLANSICKEKHHGGPWP*KYWAKS
Trigger: AGATTTGGCCCAGTACTTCCAGGGCCAGGGGCCCCC...GTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp GTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATGCTTGGAACTTGGGTaGGGGCCCCTGGCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: VFELITIWSVFQVLRLQVCLELG*GPLALE
Trigger: TTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCA...TACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAGTGATGAGATTCTCTTaGCTATGGCTAGAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQVMRFS*LWLEPG
Trigger: TCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCAC...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGGCGGAGCTGAAGAAATaGGCAGGGCCTGAGCCGCTG +
Preference number: 4 (lower is better)
Translates to: HNHLVCLPSAEITSILNKAELKK*AGPEPL
Trigger: CAGCGGCTCAGGCCCTGCCCATTTCTTCAGCTCCGC...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS-3UTR TCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTAGTTGCTGCCACTGTCTaGGTGGTTTACAACGCCATT +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLVAATV*VVYNAI
Trigger: AATGGCGTTGTAAACCACTCAGACAGTGGCAGCAAC...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCATGGGGCAAAGGCGCTaGACAAAGAGGCCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: QVCLANSICKEKHHPCTFMGQRR*TKRPLE
Trigger: TTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCAT...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GACAGTGTCACCAAGACTGGCCTTGAATTTGAACTCACAGTCTTCTTGCCTCTTCTCGGAAGTCTTGCTTaGCTGCATGCTTCCAGGGAA +
Preference number: 4 (lower is better)
Translates to: DSVTKTGLEFELTVFLPLLGSLA*LHASRE
Trigger: TTCCCTGGAAGCATGCAGGCAAGCAAGACTTCCGAG...AAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGACACTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCCTCGGAAGTCTTGCTTaGCTGCATGCTTCCAGGGAA +
Preference number: 4 (lower is better)
Translates to: SQSSCLLSHMCQLCNTSPLGSLA*LHASRE
Trigger: TTCCCTGGAAGCATGCAGGCAAGCAAGACTTCCGAG...GGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GAGGAGCATACAATTCCCTCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTAGTTGCAGTTGCTGTTaGTGTCGCTCCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: EEHTIPSEITPFGTFQFLSCSCC*CRSCCC
Trigger: GCAGCAACAGGAGCGACAGCAACAGCAACTGCAACT...AAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGAGGGAATTGTATGCTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTCCACCTGCTCCATGCTaGTCTCCGAGTCTGAGCGCT +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCPPAPC*SPSLSA
Trigger: AGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGG...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp GAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTGACTTATAAGCATGCTCCACACACTTATTaGTGGGCAGCAGATGAGGAC +
Preference number: 4 (lower is better)
Translates to: EAGKHGAEVESLHLTYKHAPHTY*WAADED
Trigger: GTCCTCATCTGCTGCCCAGCAATAAGTGTGTGGAGC...ATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTGTCGGGCAAAGGCCTaGTCCATCTGCACTGTGATG +
Preference number: 4 (lower is better)
Translates to: QVCLANSICKEKHHPCTFCRAKA*SICTVM
Trigger: CATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACA...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTGGGTGCAGCGTACTTTaGCTGAGGCCATCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: KSASQTQFVRRNITLALSGCSVL*LRPSFS
Trigger: GGAGAAGGATGGCCTCAGGCAAAGTACGCTGCACCC...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS-3UTR CCA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGGTCCCAGCACACCCCTaGGAAATGGCCACTCTCCAC +
Preference number: 4 (lower is better)
Translates to: HNHLVCLPSAEITSILNKVPAHP*EMATLH
Trigger: GTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGAC...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp AAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGGGTTTACAACGCCATTaGTCCTCCCATTTTCCATAT +
Preference number: 4 (lower is better)
Translates to: KQADQECGEQVYFHGDATGLQRH*SSHFPY
Trigger: ATATGGAAAATGGGAGGACCAATGGCGTTGTAAACC...CGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTACTGCCACTGTCTGAGTaGTTTACAACGCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: VIRTITEAGRPRVWRTSLLPLSE*FTTPLV
Trigger: GACCAATGGCGTTGTAAACCACTCAGACAGTGGCAG...TAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCATGCTCCAGGAACACTaGGTCCTCTCTAATGGTGGC +
Preference number: 4 (lower is better)
Translates to: PQQVCLANSICKEKHHPCMLQEH*VLSNGG
Trigger: GCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCAT...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGATCAGTGTCGTGATGAGATTCTCTTaGCTATGGCTAGAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: DQECGEQVYFHGDATISVVMRFS*LWLEPG
Trigger: TCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCAC...GACACTGATCGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
CDS-3UTR TCA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTACGCCTCTGTCAAGCTaGTTCAGCAGGTGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: KSASQTQFVRRNITLALSTPLSS*FSRCWV
Trigger: TACCCAGCACCTGCTGAATCAGCTTGACAGAGGCGT...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTGAACATGGTCTTGGCTaGATCGTCCCAGCACACCCC +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCEHGLG*IVPAHP
Trigger: GGGGTGTGCTGGGACGATGCAGCCAAGACCATGTTC...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCAACCAACAACCCCACACCTCTAGTCATCCCAAGTGGTTCCACTGAGGACCAAATGTCCCCATCTTTGTaGTTTTCCTTAAACAGTGCC +
Preference number: 4 (lower is better)
Translates to: STNNPTPLVIPSGSTEDQMSPSL*FSLNSA
Trigger: GGCACTGTTTAAGGAAAAGCACAAAGATGGGGACAT...TTGGTCCTCAGTGGAACCACTTGGGATGACTAGAGGTGTGGGGTTGTTGGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTAGTTGCAGTTGCTGTTaGTGTCGCTCCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: QQVCLANSICKEKHHPCTSCSCC*CRSCCC
Trigger: GCAGCAACAGGAGCGACAGCAACAGCAACTGCAACT...AGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCAGTTGCAGTTGCTGTTaGTGTCGCTCCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: QVCLANSICKEKHHPCTFSCSCC*CRSCCC
Trigger: GCAGCAACAGGAGCGACAGCAACAGCAACTGCAACT...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGTGGTGGCCTCAGTTGTaGCAGCTCCCTCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: HNHLVCLPSAEITSILNKWWPQL*QLPPLA
Trigger: AGCTAGAGGAGGGAGCTGGCACAACTGAGGCCACCA...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACATTGGGAAACTCCACCTaGTCCATGCTGCTCTCCGAG +
Preference number: 4 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITLGNST*SMLLSE
Trigger: CTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAA...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTTCCAGGAGATGGGGATaGGGCAAAGGCGCTGAACAA +
Preference number: 4 (lower is better)
Translates to: KSASQTQFVRRNITLALSSRRWG*GKGAEQ
Trigger: TTGTTCAGCGCCTTTGCCCCATCCCCATCTCCTGGA...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGGTGCATTCCAGGAGATaGGGATGGGGCAAAGGCGCT +
Preference number: 4 (lower is better)
Translates to: HNHLVCLPSAEITSILNKVHSRR*GWGKGA
Trigger: AGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCAC...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTGTGCATTCCAGGAGATaGGGATGGGGCAAAGGCGCT +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCVHSRR*GWGKGA
Trigger: AGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCAC...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTGGAGCTGAGAGAGAATATCCACACACTTATTGCTaGGCAGCAGATGAGGACCAG +
Preference number: 4 (lower is better)
Translates to: SEITPFGTFQFLGAEREYPHTYC*AADEDQ
Trigger: CTGGTCCTCATCTGCTGCCCAGCAATAAGTGTGTGG...ATATTCTCTCTCAGCTCCAAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp GTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTAACGCCTCTGTCAAGCTaGTTCAGCAGGTGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: VFELITIWSVFQVLRLQVTPLSS*FSRCWV
Trigger: TACCCAGCACCTGCTGAATCAGCTTGACAGAGGCGT...TACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATATCCTCTCGGAAGTCTTaGTTGCCTGCATGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: SICKEKHHPCTFSWPCWISSRKS*LPACFQ
Trigger: CTGGAAGCATGCAGGCAAGCAAGACTTCCGAGAGGA...TATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTTCCTGTTGCTGCCATTaGCACCACCGCCTATGTTGC +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCSCCCH*HHRLCC
Trigger: GCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGA...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp ACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCTCCTGTTGCTGCCATTaGCACCACCGCCTATGTTGC +
Preference number: 4 (lower is better)
Translates to: TSILNKSASQTQFVRRNISCCCH*HHRLCC
Trigger: GCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGA...GATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCAGCTAAATTTTATTTCTGCTGTCGCTCCTGTTaGTGCCATTGCCACCACCGC +
Preference number: 4 (lower is better)
Translates to: SCLTCANYVIPHPAKFYFCCRSC*CHCHHR
Trigger: GCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCA...GAAATAAAATTTAGCTGGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTCGACAGTCTAGGCTGTaGACCTGGGTCTTACCCACC +
Preference number: 4 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSRQSRL*TWVLPT
Trigger: GGTGGGTAAGACCCAGGTGCACAGCCTAGACTGTCG...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTACTCCACCTGCTCCATaGTGCTCTCCGAGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSTPPAP*CSPSLS
Trigger: GCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGT...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp ACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCTGTCGGGCAAAGGCCTaGTCCATCTGCACTGTGATG +
Preference number: 4 (lower is better)
Translates to: TSILNKSASQTQFVRRNICRAKA*SICTVM
Trigger: CATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACA...GATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGAAGCAGGAGGGAGGGTTCCTGCTaGCAGTATTCGATATACTTT +
Preference number: 4 (lower is better)
Translates to: FSWPCWITHGDKNHHRSRREGSC*QYSIYF
Trigger: AAAGTATATCGAATACTGCCAGCAGGAACCCTCCCT...CCTGCTTCTGTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GAGGCAGGCAAGCATGGAGCTGAGGTTGAGAGTTTACATCTGACTTATAAGCATTTGCATGGTGATTTCTaGTTCCGTGGTTGGTTAGGG +
Preference number: 4 (lower is better)
Translates to: EAGKHGAEVESLHLTYKHLHGDF*FRGWLG
Trigger: CCCTAACCAACCACGGAACCAGAAATCACCATGCAA...ATGCTTATAAGTCAGATGTAAACTCTCAACCTCAGCTCCATGCTTGCCTGCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCCTGCCACTGTCTGAGTaGTTTACAACGCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: QVCLANSICKEKHHPCTFLPLSE*FTTPLV
Trigger: GACCAATGGCGTTGTAAACCACTCAGACAGTGGCAG...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp ACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCTCCAGGAGATGGGGATaGGGCAAAGGCGCTGAACAA +
Preference number: 4 (lower is better)
Translates to: TSILNKSASQTQFVRRNISRRWG*GKGAEQ
Trigger: TTGTTCAGCGCCTTTGCCCCATCCCCATCTCCTGGA...GATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp CAGGTTGTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTAGTTGCTGCCACTGTCTaGGTGGTTTACAACGCCATT +
Preference number: 4 (lower is better)
Translates to: QVVFELITIWSVFQVLRLVAATV*VVYNAI
Trigger: AATGGCGTTGTAAACCACTCAGACAGTGGCAGCAAC...TAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGACAACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTGAGTTCAGAGGAAGTTaGTGCTCCAGGAACACTGGG +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCEFRGS*CSRNTG
Trigger: CCCAGTGTTCCTGGAGCATCAACTTCCTCTGAACTC...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGAAGCAGGATGTCCCCATCTTTGTaGTTTTCCTTAAACAGTGCC +
Preference number: 4 (lower is better)
Translates to: FSWPCWITHGDKNHHRSRMSPSL*FSLNSA
Trigger: GGCACTGTTTAAGGAAAAGCACAAAGATGGGGACAT...CCTGCTTCTGTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp TACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATTGTCGGGCAAAGGCCTaGTCCATCTGCACTGTGATG +
Preference number: 4 (lower is better)
Translates to: YKYPQQVCLANSICKEKHCRAKA*SICTVM
Trigger: CATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACA...ATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTAATGCTCCAGGAACACTaGGTCCTCTCTAATGGTGGC +
Preference number: 4 (lower is better)
Translates to: VFELITIWSVFQVLRLQVMLQEH*VLSNGG
Trigger: GCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCAT...TACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCGTGATGAGATTCTCTTaGCTATGGCTAGAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: ANSICKEKHHPCTFSWPCVMRFS*LWLEPG
Trigger: TCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCAC...GCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR CAA 72 bp CTGGCCTTGAATTTGAACTCACAGTCTTCTTGCCTCTaGTCTCACATGTGCCAACTATGTAATACCTCACCC +
Preference number: 4 (lower is better)
Translates to: LALNLNSQSSCL*SHMCQLCNTSP
Trigger: GGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp TCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATATTCTTCCCTCTCAGGTaGCACACAACTGATACTTCG +
Preference number: 4 (lower is better)
Translates to: SICKEKHHPCTFSWPCWIFFPLR*HTTDTS
Trigger: CGAAGTATCAGTTGTGTGTCACCTGAGAGGGAAGAA...TATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp ACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCGTTGCTGCCACTGTCTaGGTGGTTTACAACGCCATT +
Preference number: 4 (lower is better)
Translates to: TSILNKSASQTQFVRRNIVAATV*VVYNAI
Trigger: AATGGCGTTGTAAACCACTCAGACAGTGGCAGCAAC...GATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp TACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATGCAGCGTACTTTGCCTaGGGCCATCCTGAAAGGAAA +
Preference number: 4 (lower is better)
Translates to: YKYPQQVCLANSICKEKHAAYFA*GHPERK
Trigger: TTTCCTTTCAGGATGGCCTCAGGCAAAGTACGCTGC...ATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTGCTCCACACACTTATTaGTGGGCAGCAGATGAGGAC +
Preference number: 4 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSAPHTY*WAADED
Trigger: GTCCTCATCTGCTGCCCAGCAATAAGTGTGTGGAGC...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCAGCTAAATTTTATTTCAGGGAATCCGGAACATaGTCTTGGCTGCATCGTCCC +
Preference number: 4 (lower is better)
Translates to: SCLTCANYVIPHPAKFYFRESGT*SWLHRP
Trigger: GGGACGATGCAGCCAAGACCATGTTCCGGATTCCCT...GAAATAAAATTTAGCTGGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACAGTGATGAGATTCTCTTaGCTATGGCTAGAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITVMRFS*LWLEPG
Trigger: TCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCAC...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
3UTR CAA 72 bp TTTTTGGAGACAGTGTCACCAAGACTGGCCTTGAATTaGAACTCACAGTCTTCTTGCCTCTTGTCTCACATG +
Preference number: 4 (lower is better)
Translates to: FLETVSPRLALN*NSQSSCLLSHM
Trigger: CATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGACACTGTCTCCAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR TCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTTTCTTCCCTCTCAGGTaGCACACAACTGATACTTCG +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCFFPLR*HTTDTS
Trigger: CGAAGTATCAGTTGTGTGTCACCTGAGAGGGAAGAA...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CAGGTTGTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTAAGGGAGGGTTCCTGCTaGCAGTATTCGATATACTTT +
Preference number: 4 (lower is better)
Translates to: QVVFELITIWSVFQVLRLREGSC*QYSIYF
Trigger: AAAGTATATCGAATACTGCCAGCAGGAACCCTCCCT...TAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGACAACCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTTTGCATGGTGATTTCTaGTTCCGTGGTTGGTTAGGG +
Preference number: 4 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCLHGDF*FRGWLG
Trigger: CCCTAACCAACCACGGAACCAGAAATCACCATGCAA...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp CAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTGGTTTACAACGCCATTaGTCCTCCCATTTTCCATAT +
Preference number: 4 (lower is better)
Translates to: QQVCLANSICKEKHHPCTGLQRH*SSHFPY
Trigger: ATATGGAAAATGGGAGGACCAATGGCGTTGTAAACC...AGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp TCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTGGAGCTGAGAGAGAATATGGTTTACAACGCCATTaGTCCTCCCATTTTCCATAT +
Preference number: 4 (lower is better)
Translates to: SEITPFGTFQFLGAEREYGLQRH*SSHFPY
Trigger: ATATGGAAAATGGGAGGACCAATGGCGTTGTAAACC...ATATTCTCTCTCAGCTCCAAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CCA 90 bp GTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTAAGGGAGGGTTCCTGCTaGCAGTATTCGATATACTTT +
Preference number: 4 (lower is better)
Translates to: VFELITIWSVFQVLRLQVREGSC*QYSIYF
Trigger: AAAGTATATCGAATACTGCCAGCAGGAACCCTCCCT...TACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR GCA 90 bp CATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTATCCTCAACAAGATGTCCCCATCTTTGTaGTTTTCCTTAAACAGTGCC +
Preference number: 4 (lower is better)
Translates to: HNHLVCLPSAEITSILNKMSPSL*FSLNSA
Trigger: GGCACTGTTTAAGGAAAAGCACAAAGATGGGGACAT...CTTGTTGAGGATACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp AGGTGCTGGGTAGGCTCCAGTGGGTCGGGTTTGGGAAACTCCACCTaGTCCATGCTGCTCTCCGAGTCTGAGCGCTCAGCCACGAGCCGA +
Preference number: 5 (lower is better)
Translates to: RCWVGSSGSGLGNST*SMLLSESERSATSR
Trigger: TCGGCTCGTGGCTGAGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCACTGGAGCCTACCCAGCACCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp GACCAGGCCCGGGTGGGGCCTCTGGTGCATTCCAGGAGATGGGGATaGGGCAAAGGCGCTGAACAAAGAGGCCTCTGGAATTGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: DQARVGPLVHSRRWG*GKGAEQRGLWNCWP
Trigger: TGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCCGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp GCTGCATCGTCCCAGCACACCCCTGGGAAATGGCCACTCTCCACCTaGTCCACGATCCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTTG +
Preference number: 5 (lower is better)
Translates to: AASSQHTPGKWPLST*STIQLRSFRVQRTL
Trigger: CAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGACGATGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp CGGAACATGGTCTTGGCTGCATCGTCCCAGCACACCCCTGGGAAATaGCCACTCTCCACCTGCTCCACGATCCAGCTCCGCAGCTTTCGG +
Preference number: 5 (lower is better)
Translates to: RNMVLAASSQHTPGK*PLSTCSTIQLRSFR
Trigger: CCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGACGATGCAGCCAAGACCATGTTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp GGGAATCCGGAACATGGTCTTGGCTGCATCGTCCCAGCACACCCCTaGGAAATGGCCACTCTCCACCTGCTCCACGATCCAGCTCCGCAG +
Preference number: 5 (lower is better)
Translates to: GNPEHGLGCIVPAHP*EMATLHLLHDPAPQ
Trigger: CTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGACGATGCAGCCAAGACCATGTTCCGGATTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp GGCCACTCTCCACCTGCTCCACGATCCAGCTCCGCAGCTTTCGGGTaGAGCGTACTTTGCCTGAGGCCATCCTTCTCCTTACCATACCCC +
Preference number: 5 (lower is better)
Translates to: GHSPPAPRSSSAAFG*SVLCLRPSFSLPYP
Trigger: GGGGTATGGTAAGGAGAAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS CCA 90 bp GACGCCTCTGTCAAGCTGATTCAGCAGGTGCTGGGTAGGCTCCAGTaGGTCGGGTTTGGGAAACTCCACCTGCTCCATGCTGCTCTCCGA +
Preference number: 5 (lower is better)
Translates to: DASVKLIQQVLGRLQ*VGFGKLHLLHAALR
Trigger: TCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCACTGGAGCCTACCCAGCACCTGCTGAATCAGCTTGACAGAGGCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp TGGGGATGGGGCAAAGGCGCTGAACAAAGAGGCCTCTGGAATTGCTaGCCACCAGGACGCCTCTGTCAAGCTGATTCAGCAGGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: WGWGKGAEQRGLWNC*PPGRLCQADSAGAG
Trigger: CCCAGCACCTGCTGAATCAGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCATCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp TGGCCTCAGTTGTGCCAGCTCCCTCCTCTAGCTCAGAGTTGCAGTTaGTGTTGCTGTCGCTCCTGTTGCTGCCATTGCCACCACCGCCTA +
Preference number: 5 (lower is better)
Translates to: WPQLCQLPPLAQSCS*CCCRSCCCHCHHRL
Trigger: TAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTGGCACAACTGAGGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp CTATGGCTAGAGCCAGGACTCTCCTCCCAGAAATGTAGGGTTGCTTaGAACTTGGGTGGGGGCCCCTGGCCCTGGAAGTACTGGGCCAAA +
Preference number: 5 (lower is better)
Translates to: LWLEPGLSSQKCRVA*NLGGGPWPWKYWAK
Trigger: TTTGGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS GCA 90 bp AGATGGGGATGGGGCAAAGGCGCTGAACAAAGAGGCCTCTGGAATTaGTGGCCACCAGGACGCCTCTGTCAAGCTGATTCAGCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: RWGWGKGAEQRGLWN*WPPGRLCQADSAGA
Trigger: AGCACCTGCTGAATCAGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCATCCCCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp TCCAGGAGATGGGGATGGGGCAAAGGCGCTGAACAAAGAGGCCTCTaGAATTGCTGGCCACCAGGACGCCTCTGTCAAGCTGATTCAGCA +
Preference number: 5 (lower is better)
Translates to: SRRWGWGKGAEQRGL*NCWPPGRLCQADSA
Trigger: TGCTGAATCAGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCATCCCCATCTCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCAAGGGTTGCTTGGAACTaGGGTGGGGGCCCCTGGCCC +
Preference number: 5 (lower is better)
Translates to: WQGSLETLKPMASDTTQPRVAWN*GGGPWP
Trigger: GGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCT...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 90 bp CCATACGACCTCTCTCGGGAACCTCCTCAAATTCGGAACTCTTGTTaGGGGCACAGCGTAGGCGAGTCTTCCAGACAGCGGGGTGTCCTA +
Preference number: 5 (lower is better)
Translates to: PYDLSREPPQIRNSC*GHSVGESSRQRGVL
Trigger: TAGGACACCCCGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGAGAGAGGTCGTATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp CCTCCTCTAGCTCAGAGTTGCAGTTGCTGTTGCTGTCGCTCCTGTTaGTGCCATTGCCACCACCGCCTATGTTGCTGCCACTGTCTGAGT +
Preference number: 5 (lower is better)
Translates to: PPLAQSCSCCCCRSC*CHCHHRLCCCHCLS
Trigger: ACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CCTTGCACTTTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACAGGGTTGCTTGGAACTaGGGTGGGGGCCCCTGGCCC +
Preference number: 5 (lower is better)
Translates to: PCTFSWPCWITHGDKNHHRVAWN*GGGPWP
Trigger: GGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCT...GTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CAA 90 bp GAGGAGCATACAATTCCCTCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTAGGGTTGCTTGGAACTaGGGTGGGGGCCCCTGGCCC +
Preference number: 5 (lower is better)
Translates to: EEHTIPSEITPFGTFQFLRVAWN*GGGPWP
Trigger: GGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCT...AAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGAGGGAATTGTATGCTCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp TGCTGTCGCTCCTGTTGCTGCCATTGCCACCACCGCCTATGTTGCTaGCACTGTCTGAGTGGTTTACAACGCCATTGGTCCTCCCATTTT +
Preference number: 5 (lower is better)
Translates to: CCRSCCCHCHHRLCC*HCLSGLQRHWSSHF
Trigger: AAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTAGGGTTGCTTGGAACTaGGGTGGGGGCCCCTGGCCC +
Preference number: 5 (lower is better)
Translates to: QQVCLANSICKEKHHPCTRVAWN*GGGPWP
Trigger: GGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCT...AGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CAA 90 bp TTAGGGTCCATGACCATCACAACAGAGAACAAAGCAGGAGGCAGGCAAGCATGGCGGGTGCAGCGTACTTaGCCTGAGGCCATCCTGAAA +
Preference number: 5 (lower is better)
Translates to: LGSMTITTENKAGGRQAWRVQRT*PEAILK
Trigger: TTTCAGGATGGCCTCAGGCAAAGTACGCTGCACCCG...CCATGCTTGCCTGCCTCCTGCTTTGTTCTCTGTTGTGATGGTCATGGACCCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138037.2
CDS TCA 90 bp GGCCCTGGAAGTACTGGGCCAAATCTCTACAGAAGTAGGTGGTCTTaGAGAGCTCCACACACTTATTGCTGGGCAGCAGATGAGGACCAG +
Preference number: 5 (lower is better)
Translates to: GPGSTGPNLYRSRWS*RAPHTYCWAADEDQ
Trigger: CTGGTCCTCATCTGCTGCCCAGCAATAAGTGTGTGGAGCTCTTCAAGACCACCTACTTCTGTAGAGATTTGGCCCAGTACTTCCAGGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 90 bp CTCCACGATCCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTTGCCTaGGGCCATCCTGAAAGGAAACCTCAGACATTTGGTCTTGATAAG +
Preference number: 5 (lower is better)
Translates to: LHDPAPQLSGAAYFA*GHPERKPQTFGLDK
Trigger: CTTATCAAGACCAAATGTCTGAGGTTTCCTTTCAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138037.2
CDS CCA 90 bp GCAAAGGCCTGCTCCATCTGCACTGTGATGAGATTCTCTTGGCTATaGCTAGAGCCAGGACTCTCCTCCCAGAAATGTAGGGTTGCTTGG +
Preference number: 5 (lower is better)
Translates to: AKACSICTVMRFSWL*LEPGLSSQKCRVAW
Trigger: CCAAGCAACCCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp TGTCGGGCAAAGGCCTGCTCCATCTGCACTGTGATGAGATTCTCTTaGCTATGGCTAGAGCCAGGACTCTCCTCCCAGAAATGTAGGGTT +
Preference number: 5 (lower is better)
Translates to: CRAKACSICTVMRFS*LWLEPGLSSQKCRV
Trigger: AACCCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCAATCCGGAACATGGTCTaGGCTGCATCGTCCCAGCAC +
Preference number: 5 (lower is better)
Translates to: WQGSLETLKPMASDTTQPIRNMV*AASSQH
Trigger: GTGCTGGGACGATGCAGCCAAGACCATGTTCCGGAT...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGGTCCTCTCGGAAGTCTaGCTTGCCTGCATGCTTCCA +
Preference number: 5 (lower is better)
Translates to: HRSRPTKSVENKSISMETVLSEV*LACMLP
Trigger: TGGAAGCATGCAGGCAAGCAAGACTTCCGAGAGGAC...CGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGTTTCTGGTTCCGTGGTaGGTTAGGGAGGGTTCCTGC +
Preference number: 5 (lower is better)
Translates to: HRSRPTKSVENKSISMETFLVPW*VREGSC
Trigger: GCAGGAACCCTCCCTAACCAACCACGGAACCAGAAA...CGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp GGTGATAAGAACCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTCTCCTGTTGCTGCCATaGCCACCACCGCCTATGTTG +
Preference number: 5 (lower is better)
Translates to: GDKNHHRSRPTKSVENKSLLLLP*PPPPML
Trigger: CAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAG...AGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGGTTCTTATCACC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CCTTGCACTTTCTCTTGGCCATGCTGGATAACACACGGTGATAAGAACCATCACTTGCTGTCGCTCCTGTaGCTGCCATTGCCACCACCG +
Preference number: 5 (lower is better)
Translates to: PCTFSWPCWITHGDKNHHLLSLL*LPLPPP
Trigger: CGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAA...GTGATGGTTCTTATCACCGTGTGTTATCCAGCATGGCCAAGAGAAAGTGCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCATTTCTGGTTCCGTGGTaGGTTAGGGAGGGTTCCTGC +
Preference number: 5 (lower is better)
Translates to: WQGSLETLKPMASDTTQPFLVPW*VREGSC
Trigger: GCAGGAACCCTCCCTAACCAACCACGGAACCAGAAA...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp GAGGAGCATACAATTCCCTCTGAGATCACACCCTTTGGAACTTTCCAGTTCCTTAAGAGGCCTCTGGAATaGCTGGCCACCAGGACGCCT +
Preference number: 5 (lower is better)
Translates to: EEHTIPSEITPFGTFQFLKRPLE*LATRTP
Trigger: AGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTT...AAGGAACTGGAAAGTTCCAAAGGGTGTGATCTCAGAGGGAATTGTATGCTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 90 bp CCTGTTGCTGCCATTGCCACCACCGCCTATGTTGCTGCCACTGTCTaGGTGGTTTACAACGCCATTGGTCCTCCCATTTTCCATATTTTC +
Preference number: 5 (lower is better)
Translates to: PVAAIATTAYVAATV*VVYNAIGPPIFHIF
Trigger: GAAAATATGGAAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 90 bp TCTGGAATCTTCTCCAGTAAATGTCGGGCAAAGGCCTGCTCCATCTaGACTGTGATGAGATTCTCTTGGCTATGGCTAGAGCCAGGACTC +
Preference number: 5 (lower is better)
Translates to: SGIFSSKCRAKACSI*TVMRFSWLWLEPGL
Trigger: GAGTCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCCTCCTGTTGCTGCCATaGCCACCACCGCCTATGTTG +
Preference number: 5 (lower is better)
Translates to: PQQVCLANSICKEKHHPCLLLLP*PPPPML
Trigger: CAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAG...GCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCATCCTCTAGCTCAGAGTaGCAGTTGCTGTTGCTGTCG +
Preference number: 5 (lower is better)
Translates to: WQGSLETLKPMASDTTQPSSSSE*QLLLLS
Trigger: CGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGA...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCAAGAGGCCTCTGGAATaGCTGGCCACCAGGACGCCT +
Preference number: 5 (lower is better)
Translates to: QVCLANSICKEKHHPCTFKRPLE*LATRTP
Trigger: AGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTT...GAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 90 bp TTGCTGCCATTGCCACCACCGCCTATGTTGCTGCCACTGTCTGAGTaGTTTACAACGCCATTGGTCCTCCCATTTTCCATATTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: LLPLPPPPMLLPLSE*FTTPLVLPFSIFSS
Trigger: GGAAGAAAATATGGAAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp GCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCATCCGGAACATGGTCTaGGCTGCATCGTCCCAGCAC +
Preference number: 5 (lower is better)
Translates to: ANSICKEKHHPCTFSWPCIRNMV*AASSQH
Trigger: GTGCTGGGACGATGCAGCCAAGACCATGTTCCGGAT...GCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTTTGCTGTCGCTCCTGTaGCTGCCATTGCCACCACCG +
Preference number: 5 (lower is better)
Translates to: KSASQTQFVRRNITLALSLLSLL*LPLPPP
Trigger: CGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAA...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCGAGTTGCAGTTGCTGTaGCTGTCGCTCCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: SQSSCLLSHMCQLCNTSPELQLL*LSLLLL
Trigger: CAGCAACAGGAGCGACAGCAACAGCAACTGCAACTC...GGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTAAGAGGCCTCTGGAATaGCTGGCCACCAGGACGCCT +
Preference number: 5 (lower is better)
Translates to: KSASQTQFVRRNITLALSKRPLE*LATRTP
Trigger: AGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTT...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CCATCACAGAAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGATGTGATGAGATTCTCTaGGCTATGGCTAGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: PSQKQADQECGEQVYFHGCDEIL*AMARAR
Trigger: CCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACA...TCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTTCTGTGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CAA 90 bp TGGCAAGGGTCTTTGGAAACCTTAAAGCCCATGGCCAGTGACACAACTCAACCATGTGATGAGATTCTCTaGGCTATGGCTAGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: WQGSLETLKPMASDTTQPCDEIL*AMARAR
Trigger: CCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACA...TGGTTGAGTTGTGTCACTGGCCATGGGCTTTAAGGTTTCCAAAGACCCTTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp ATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCTGGATAACACGGGTGCAGCGTACTTaGCCTGAGGCCATCCTTCTC +
Preference number: 5 (lower is better)
Translates to: ICKEKHHPCTFSWPCWITRVQRT*PEAILL
Trigger: GAGAAGGATGGCCTCAGGCAAAGTACGCTGCACCCG...TGTTATCCAGCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS GCA 90 bp TTCTCCTCTTCTGGAATCTTCTCCAGTAAATGTCGGGCAAAGGCCTaGTCCATCTGCACTGTGATGAGATTCTCTTGGCTATGGCTAGAG +
Preference number: 5 (lower is better)
Translates to: FSSSGIFSSKCRAKA*SICTVMRFSWLWLE
Trigger: CTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGAAGAGGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AAGCAGGCCGACCAAGAGTGTGGAGAACAAGTCTATTTCCATGGAGACGCGACGCCTATGTCCCCATCTTaGTGCTTTTCCTTAAACAGT +
Preference number: 5 (lower is better)
Translates to: KQADQECGEQVYFHGDATPMSPS*CFSLNS
Trigger: ACTGTTTAAGGAAAAGCACAAAGATGGGGACATAGG...CGTCGCGTCTCCATGGAAATAGACTTGTTCTCCACACTCTTGGTCGGCCTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp CAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTTCTGGTTCCGTGGTaGGTTAGGGAGGGTTCCTGC +
Preference number: 5 (lower is better)
Translates to: QQVCLANSICKEKHHPCTFLVPW*VREGSC
Trigger: GCAGGAACCCTCCCTAACCAACCACGGAACCAGAAA...AGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp GACAGTGTCACCAAGACTGGCCTTGAATTTGAACTCACAGTCTTCTTGCCTCTTTCCTCTAGCTCAGAGTaGCAGTTGCTGTTGCTGTCG +
Preference number: 5 (lower is better)
Translates to: DSVTKTGLEFELTVFLPLSSSSE*QLLLLS
Trigger: CGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGA...AAGAGGCAAGAAGACTGTGAGTTCAAATTCAAGGCCAGTCTTGGTGACACTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp GTCTTTGAGCTCATAACCATTTGGTCTGTCTTCCAAGTGCTGAGATTACAAGTAATCCGGAACATGGTCTaGGCTGCATCGTCCCAGCAC +
Preference number: 5 (lower is better)
Translates to: VFELITIWSVFQVLRLQVIRNMV*AASSQH
Trigger: GTGCTGGGACGATGCAGCCAAGACCATGTTCCGGAT...TACTTGTAATCTCAGCACTTGGAAGACAGACCAAATGGTTATGAGCTCAAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp ACAAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCCTCCTGTTGCTGCCATaGCCACCACCGCCTATGTTG +
Preference number: 5 (lower is better)
Translates to: TSILNKSASQTQFVRRNILLLLP*PPPPML
Trigger: CAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAG...GATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCAGCTAAATTTTATTTCTTGCTGTCGCTCCTGTaGCTGCCATTGCCACCACCG +
Preference number: 5 (lower is better)
Translates to: SCLTCANYVIPHPAKFYFLLSLL*LPLPPP
Trigger: CGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAA...GAAATAAAATTTAGCTGGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AGCGGATGGAGGCTGATCTCTGGCCCAAAGAGTTATTTATTATTATATGTAAGTGTCCTCTCGGAAGTCTaGCTTGCCTGCATGCTTCCA +
Preference number: 5 (lower is better)
Translates to: SGWRLISGPKSYLLLYVSVLSEV*LACMLP
Trigger: TGGAAGCATGCAGGCAAGCAAGACTTCCGAGAGGAC...ACTTACATATAATAATAAATAACTCTTTGGGCCAGAGATCAGCCTCCATCCGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TTGAATTTGAACTCACAGTCTTCTTGCCTCTTGTCTCACATGTGCCAACTATGTTCCTCTAGCTCAGAGTaGCAGTTGCTGTTGCTGTCG +
Preference number: 5 (lower is better)
Translates to: LNLNSQSSCLLSHMCQLCSSSSE*QLLLLS
Trigger: CGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGA...ACATAGTTGGCACATGTGAGACAAGAGGCAAGAAGACTGTGAGTTCAAATTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTTGTGATGAGATTCTCTaGGCTATGGCTAGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: KSASQTQFVRRNITLALSCDEIL*AMARAR
Trigger: CCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACA...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CAA 90 bp CAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTGGTTTACAACGCCATaGGTCCTCCCATTTTCCATA +
Preference number: 5 (lower is better)
Translates to: QQVCLANSICKEKHHPCTWFTTP*VLPFSI
Trigger: TATGGAAAATGGGAGGACCAATGGCGTTGTAAACCA...AGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp TCTTGTCTCACATGTGCCAACTATGTAATACCTCACCCAGCTAAATTTTATTTCGAGTTGCAGTTGCTGTaGCTGTCGCTCCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: SCLTCANYVIPHPAKFYFELQLL*LSLLLL
Trigger: CAGCAACAGGAGCGACAGCAACAGCAACTGCAACTC...GAAATAAAATTTAGCTGGGTGAGGTATTACATAGTTGGCACATGTGAGACAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AAGTATCCTCAACAAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACTGTGATGAGATTCTCTaGGCTATGGCTAGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: KYPQQVCLANSICKEKHHCDEIL*AMARAR
Trigger: CCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACA...GTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTTGTTGAGGATACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS-3UTR CAA 90 bp GCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTCTTGGCCATGCCCTATGTCCCCATCTTaGTGCTTTTCCTTAAACAGT +
Preference number: 5 (lower is better)
Translates to: ANSICKEKHHPCTFSWPCPMSPS*CFSLNS
Trigger: ACTGTTTAAGGAAAAGCACAAAGATGGGGACATAGG...GCATGGCCAAGAGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS-3UTR CAA 90 bp AAGTCTGCCTCGCAAACTCAATTTGTAAGGAGAAACATCACCCTTGCACTTTCTTGGTTTACAACGCCATaGGTCCTCCCATTTTCCATA +
Preference number: 5 (lower is better)
Translates to: KSASQTQFVRRNITLALSWFTTP*VLPFSI
Trigger: TATGGAAAATGGGAGGACCAATGGCGTTGTAAACCA...AGAAAGTGCAAGGGTGATGTTTCTCCTTACAAATTGAGTTTGCGAGGCAGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp TCCCAGCACACCCCTGGGAAATGGCCACTCTCCACCTaGTCCACGATCCAGCTCCGCAGCTTTCGGGTGCAG +
Preference number: 6 (lower is better)
Translates to: SQHTPGKWPLST*STIQLRSFRVQ
Trigger: CTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCCATTTCCCAGGGGTGTGCTGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp GTGGGTCGGGTTTGGGAAACTCCACCTGCTCCATGCTaGTCTCCGAGTCTGAGCGCTCAGCCACGAGCCGAC +
Preference number: 6 (lower is better)
Translates to: VGRVWETPPAPC*SPSLSAQPRAD
Trigger: GTCGGCTCGTGGCTGAGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp CCAGTGGGTCGGGTTTGGGAAACTCCACCTGCTCCATaGTGCTCTCCGAGTCTGAGCGCTCAGCCACGAGCC +
Preference number: 6 (lower is better)
Translates to: PVGRVWETPPAP*CSPSLSAQPRA
Trigger: GGCTCGTGGCTGAGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCACTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 72 bp GGGGGCAAGGGCGGAGCTGAAGAAATGGGCAGGGCCTaGGCCGCTGAAAAGGTCCCAGGCTTAGCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: GGKGGAEEMGRA*AAEKVPGLAGS
Trigger: AGAACCTGCTAAGCCTGGGACCTTTTCAGCGGCTCAGGCCCTGCCCATTTCTTCAGCTCCGCCCTTGCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS CCA 72 bp CGGGTGGGGCCTCTGGTGCATTCCAGGAGATGGGGATaGGGCAAAGGCGCTGAACAAAGAGGCCTCTGGAAT +
Preference number: 6 (lower is better)
Translates to: RVGPLVHSRRWG*GKGAEQRGLWN
Trigger: ATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp GACTCTCCTCCCAGAAATGTAGGGTTGCTTGGAACTTaGGTGGGGGCCCCTGGCCCTGGAAGTACTGGGCCA +
Preference number: 6 (lower is better)
Translates to: DSPPRNVGLLGT*VGAPGPGSTGP
Trigger: TGGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCTACATTTCTGGGAGGAGAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS CAA 90 bp GTGGCCTCAGTTGTGCCAGCTCCCTCCTCTAGCTCAGAGTTGCAGTaGCTGTTGCTGTCGCTCCTGTTGCTGCCATTGCCACCACCGCCT +
Preference number: 6 (lower is better)
Translates to: VASVVPAPSSSSELQ*LLLSLLLLPLPPPP
Trigger: AGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTGGCACAACTGAGGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 72 bp TTGAAGAGCTCCACACACTTATTGCTGGGCAGCAGATaGGGACCAGGCCCGGGTGGGGCCTCTGGTGCATTC +
Preference number: 6 (lower is better)
Translates to: LKSSTHLLLGSR*GPGPGGASGAF
Trigger: GAATGCACCAGAGGCCCCACCCGGGCCTGGTCCTCATCTGCTGCCCAGCAATAAGTGTGTGGAGCTCTTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp CAGCTCCCTCCTCTAGCTCAGAGTTGCAGTTGCTGTTaGTGTCGCTCCTGTTGCTGCCATTGCCACCACCGC +
Preference number: 6 (lower is better)
Translates to: QLPPLAQSCSCC*CRSCCCHCHHR
Trigger: GCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp TGGGGATGGGGCAAAGGCGCTGAACAAAGAGGCCTCTaGAATTGCTGGCCACCAGGACGCCTCTGTCAAGCT +
Preference number: 6 (lower is better)
Translates to: WGWGKGAEQRGL*NCWPPGRLCQA
Trigger: AGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCCCCATCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp CTAGAGCCAGGACTCTCCTCCCAGAAATGTAGGGTTGCTTGGAACTaGGGTGGGGGCCCCTGGCCCTGGAAGTACTGGGCCAAATCTCTA +
Preference number: 6 (lower is better)
Translates to: LEPGLSSQKCRVAWN*GGGPWPWKYWAKSL
Trigger: TAGAGATTTGGCCCAGTACTTCCAGGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCTACATTTCTGGGAGGAGAGTCCTGGCTCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
ENSMUST00000226275.2
CDS GCA 72 bp GCTCAGAGTTGCAGTTGCTGTTGCTGTCGCTCCTGTTaGTGCCATTGCCACCACCGCCTATGTTGCTGCCAC +
Preference number: 6 (lower is better)
Translates to: AQSCSCCCCRSC*CHCHHRLCCCH
Trigger: GTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp CGATCCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTTaGCTGAGGCCATCCTTCTCCTTACCATACCCCTCT +
Preference number: 6 (lower is better)
Translates to: RSSSAAFGCSVL*LRPSFSLPYPS
Trigger: AGAGGGGTATGGTAAGGAGAAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS CCA 72 bp GTCAAGCTGATTCAGCAGGTGCTGGGTAGGCTCCAGTaGGTCGGGTTTGGGAAACTCCACCTGCTCCATGCT +
Preference number: 6 (lower is better)
Translates to: VKLIQQVLGRLQ*VGFGKLHLLHA
Trigger: AGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCACTGGAGCCTACCCAGCACCTGCTGAATCAGCTTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 72 bp ACGATCCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTaGCCTGAGGCCATCCTTCTCCTTACCATACCCCTC +
Preference number: 6 (lower is better)
Translates to: TIQLRSFRVQRT*PEAILLLTIPL
Trigger: GAGGGGTATGGTAAGGAGAAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134863.8
CDS CAA 90 bp TCCATACGACCTCTCTCGGGAACCTCCTCAAATTCGGAACTCTTGTaGAGGGCACAGCGTAGGCGAGTCTTCCAGACAGCGGGGTGTCCT +
Preference number: 6 (lower is better)
Translates to: SIRPLSGTSSNSELL*RAQRRRVFQTAGCP
Trigger: AGGACACCCCGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGAGAGAGGTCGTATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp CTGTTGCTGTCGCTCCTGTTGCTGCCATTGCCACCACCGCCTATGTaGCTGCCACTGTCTGAGTGGTTTACAACGCCATTGGTCCTCCCA +
Preference number: 6 (lower is better)
Translates to: LLLSLLLLPLPPPPM*LPLSEWFTTPLVLP
Trigger: TGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp TCAGTTGTGCCAGCTCCCTCCTCTAGCTCAGAGTTGCAGTTGCTGTaGCTGTCGCTCCTGTTGCTGCCATTGCCACCACCGCCTATGTTG +
Preference number: 6 (lower is better)
Translates to: SVVPAPSSSSELQLL*LSLLLLPLPPPPML
Trigger: CAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTGGCACAACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp CTAATGGTGGCCTCAGTTGTGCCAGCTCCCTCCTCTAGCTCAGAGTaGCAGTTGCTGTTGCTGTCGCTCCTGTTGCTGCCATTGCCACCA +
Preference number: 6 (lower is better)
Translates to: LMVASVVPAPSSSSE*QLLLLSLLLLPLPP
Trigger: TGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTGGCACAACTGAGGCCACCATTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 72 bp CTCTCTCGGGAACCTCCTCAAATTCGGAACTCTTGTTaGGGGCACAGCGTAGGCGAGTCTTCCAGACAGCGG +
Preference number: 6 (lower is better)
Translates to: LSREPPQIRNSC*GHSVGESSRQR
Trigger: CCGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGAGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp CAGAGTTGCAGTTGCTGTTGCTGTCGCTCCTGTTGCTaGCATTGCCACCACCGCCTATGTTGCTGCCACTGT +
Preference number: 6 (lower is better)
Translates to: QSCSCCCCRSCC*HCHHRLCCCHC
Trigger: ACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp GGCAAAGGCGCTGAACAAAGAGGCCTCTGGAATTGCTaGCCACCAGGACGCCTCTGTCAAGCTGATTCAGCA +
Preference number: 6 (lower is better)
Translates to: GKGAEQRGLWNC*PPGRLCQADSA
Trigger: TGCTGAATCAGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGCGCCTTTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 72 bp CCTCTCTCGGGAACCTCCTCAAATTCGGAACTCTTGTaGAGGGCACAGCGTAGGCGAGTCTTCCAGACAGCG +
Preference number: 6 (lower is better)
Translates to: PLSGTSSNSELL*RAQRRRVFQTA
Trigger: CGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGAGAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp ACATCCATACGACCTCTCTCGGGAACCTCCTCAAATTCGGAACTCTaGTTGAGGGCACAGCGTAGGCGAGTCTTCCAGACAGCGGGGTGT +
Preference number: 6 (lower is better)
Translates to: TSIRPLSGTSSNSEL*LRAQRRRVFQTAGC
Trigger: ACACCCCGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGAGAGAGGTCGTATGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp ACCTGCTCCACGATCCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTaGCCTGAGGCCATCCTGAAAGGAAACCTCAGACATTTGGTCTTG +
Preference number: 6 (lower is better)
Translates to: TCSTIQLRSFRVQRT*PEAILKGNLRHLVL
Trigger: CAAGACCAAATGTCTGAGGTTTCCTTTCAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138037.2
CDS TCA 72 bp CCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTTGCCTaGGGCCATCCTGAAAGGAAACCTCAGACATTTGGT +
Preference number: 6 (lower is better)
Translates to: PAPQLSGAAYFA*GHPERKPQTFG
Trigger: ACCAAATGTCTGAGGTTTCCTTTCAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138037.2
CDS GCA 72 bp TCCTGTTGCTGCCATTGCCACCACCGCCTATGTTGCTaGCACTGTCTGAGTGGTTTACAACGCCATTGGTCC +
Preference number: 6 (lower is better)
Translates to: SCCCHCHHRLCC*HCLSGLQRHWS
Trigger: GGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 72 bp CGACCTCTCTCGGGAACCTCCTCAAATTCGGAACTCTaGTTGAGGGCACAGCGTAGGCGAGTCTTCCAGACA +
Preference number: 6 (lower is better)
Translates to: RPLSGTSSNSEL*LRAQRRRVFQT
Trigger: TGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGAGAGAGGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 72 bp TCGCTCCTGTTGCTGCCATTGCCACCACCGCCTATGTaGCTGCCACTGTCTGAGTGGTTTACAACGCCATTG +
Preference number: 6 (lower is better)
Translates to: SLLLLPLPPPPM*LPLSEWFTTPL
Trigger: CAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 72 bp ACGATCCAGCTCCGCAGCTTTCGGGTGCAGCGTACTTaGCCTGAGGCCATCCTGAAAGGAAACCTCAGACAT +
Preference number: 6 (lower is better)
Translates to: TIQLRSFRVQRT*PEAILKGNLRH
Trigger: ATGTCTGAGGTTTCCTTTCAGGATGGCCTCAGGCAAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138037.2
CDS CAA 90 bp AGCTCAGAGTTGCAGTTGCTGTTGCTGTCGCTCCTGTTGCTGCCATaGCCACCACCGCCTATGTTGCTGCCACTGTCTGAGTGGTTTACA +
Preference number: 6 (lower is better)
Translates to: SSELQLLLLSLLLLP*PPPPMLLPLSEWFT
Trigger: TGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS TCA 72 bp GCCATTGCCACCACCGCCTATGTTGCTGCCACTGTCTaGGTGGTTTACAACGCCATTGGTCCTCCCATTTTC +
Preference number: 6 (lower is better)
Translates to: AIATTAYVAATV*VVYNAIGPPIF
Trigger: GAAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp GACACACAACTGATACTTCGCTTGCATGGTGATTTCTaGTTCCGTGGTTGGTTAGGGAGGGTTCCTGCTGGC +
Preference number: 6 (lower is better)
Translates to: DTQLILRLHGDF*FRGWLGRVPAG
Trigger: GCCAGCAGGAACCCTCCCTAACCAACCACGGAACCAGAAATCACCATGCAAGCGAAGTATCAGTTGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp TTAAACAGTGCCCAAGCCTTGAATATGGCAGCATCCTaGTCCTCTCGGAAGTCTTGCTTGCCTGCATGCTTC +
Preference number: 6 (lower is better)
Translates to: LNSAQALNMAAS*SSRKSCLPACF
Trigger: GAAGCATGCAGGCAAGCAAGACTTCCGAGAGGACCAGGATGCTGCCATATTCAAGGCTTGGGCACTGTTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp TTGCCACCACCGCCTATGTTGCTGCCACTGTCTGAGTaGTTTACAACGCCATTGGTCCTCCCATTTTCCATA +
Preference number: 6 (lower is better)
Translates to: LPPPPMLLPLSE*FTTPLVLPFSI
Trigger: TATGGAAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp TGCTCCATCTGCACTGTGATGAGATTCTCTTGGCTATaGCTAGAGCCAGGACTCTCCTCCCAGAAATGTAGG +
Preference number: 6 (lower is better)
Translates to: CSICTVMRFSWL*LEPGLSSQKCR
Trigger: CCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 90 bp CCTATGTCCCCATCTTTGTGCTTTTCCTTAAACAGTGCCCAAGCCTaGAATATGGCAGCATCCTGGTCCTCTCGGAAGTCTTGCTTGCCT +
Preference number: 6 (lower is better)
Translates to: PMSPSLCFSLNSAQA*NMAASWSSRKSCLP
Trigger: AGGCAAGCAAGACTTCCGAGAGGACCAGGATGCTGCCATATTCAAGGCTTGGGCACTGTTTAAGGAAAAGCACAAAGATGGGGACATAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp TTCTCCAGTAAATGTCGGGCAAAGGCCTGCTCCATCTaGACTGTGATGAGATTCTCTTGGCTATGGCTAGAG +
Preference number: 6 (lower is better)
Translates to: FSSKCRAKACSI*TVMRFSWLWLE
Trigger: CTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CCA 72 bp GAACTAACCTGCACTGTGATGAGATTCTCTTGGCTATaGCTAGAGCCAGGACTCTCCTCCCAGAAATGTAGG +
Preference number: 6 (lower is better)
Translates to: ELTCTVMRFSWL*LEPGLSSQKCR
Trigger: CCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCATAGCCAAGAGAATCTCATCACAGTGCAGGTTAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226275.2
CDS TCA 72 bp AGTACTGGGCCAAATCTCTACAGAAGTAGGTGGTCTTaGAGAGCTCCACACACTTATTGCTGGGCAGCAGAT +
Preference number: 6 (lower is better)
Translates to: STGPNLYRSRWS*RAPHTYCWAAD
Trigger: ATCTGCTGCCCAGCAATAAGTGTGTGGAGCTCTTCAAGACCACCTACTTCTGTAGAGATTTGGCCCAGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS GCA 72 bp TCTGGAATCTTCTCCAGTAAATGTCGGGCAAAGGCCTaGTCCATCTGCACTGTGATGAGATTCTCTTGGCTA +
Preference number: 6 (lower is better)
Translates to: SGIFSSKCRAKA*SICTVMRFSWL
Trigger: TAGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2
CDS CAA 72 bp CCATCTTTGTGCTTTTCCTTAAACAGTGCCCAAGCCTaGAATATGGCAGCATCCTGGTCCTCTCGGAAGTCT +
Preference number: 6 (lower is better)
Translates to: PSLCFSLNSAQA*NMAASWSSRKS
Trigger: AGACTTCCGAGAGGACCAGGATGCTGCCATATTCAAGGCTTGGGCACTGTTTAAGGAAAAGCACAAAGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130697.8
ENSMUST00000134863.8
ENSMUST00000138037.2