Pregenerated sensors for IRAK1BP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032251Ensembl transcript IDs: ENSMUST00000034783.6, ENSMUST00000113245.9
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAGCACACAGGCAAGAGCAGAGACCCCGAACAAACAAAGAACACACTTTTTATAGGCAACAGGGCTAGCTaGTTTATTCTCATTGGTGTA | + |
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Preference number: 2 (lower is better) Translates to: QHTGKSRDPEQTKNTLFIGNRAS*FILIGV Trigger: TACACCAATGAGAATAAACCAGCTAGCCCTGTTGCC...TATAAAAAGTGTGTTCTTTGTTTGTTCGGGGTCTCTGCTCTTGCCTGTGTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| 3UTR-3UTR GCA 90 bp | ACAGGCAAGAGCAGAGACCCCGAACAAACAAAGAACACACTTTTTATACCTTGTATGGAACATGAACTGTaGTTTTCTCAGATGCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: TGKSRDPEQTKNTLFIPCMEHEL*FSQMQL Trigger: GAGCTGCATCTGAGAAAAGCACAGTTCATGTTCCAT...ACAAGGTATAAAAAGTGTGTTCTTTGTTTGTTCGGGGTCTCTGCTCTTGCCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| 3UTR CCA 72 bp | TTTATCTGGCTCTGTACTTGGCCCACTAATATAGTTTaGAAAGTCCCTTCAGAGGGGGAAGGGGCTGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: FIWLCTWPTNIV*KVPSEGEGAGW Trigger: CCACCCAGCCCCTTCCCCCTCTGAAGGGACTTTCCAAACTATATTAGTGGGCCAAGTACAGAGCCAGATAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| 3UTR-3UTR CAA 90 bp | CAGCACACAGGCAAGAGCAGAGACCCCGAACAAACAAAGAACACACTTTTTATAAGGGGCTGGGTGGTCTaGGATTTATTTTGGATTCTA | + |
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Preference number: 3 (lower is better) Translates to: QHTGKSRDPEQTKNTLFIRGWVV*DLFWIL Trigger: TAGAATCCAAAATAAATCCAAGACCACCCAGCCCCT...TATAAAAAGTGTGTTCTTTGTTTGTTCGGGGTCTCTGCTCTTGCCTGTGTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| 3UTR GCA 72 bp | TGGAAAACGTTAACATGTTTCATGGAACATGAACTGTaGTTTTCTCAGATGCAGCTCAGGTTCTACAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: WKTLTCFMEHEL*FSQMQLRFYSF Trigger: AAAACTGTAGAACCTGAGCTGCATCTGAGAAAAGCACAGTTCATGTTCCATGAAACATGTTAACGTTTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| 3UTR GCA 72 bp | CATGTTTCATGGAACATGAACTGTGCTTTTCTCAGATaGAGCTCAGGTTCTACAGTTTTATACAACAAATAC | + |
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Preference number: 3 (lower is better) Translates to: HVSWNMNCAFLR*SSGSTVLYNKY Trigger: GTATTTGTTGTATAAAACTGTAGAACCTGAGCTGCATCTGAGAAAAGCACAGTTCATGTTCCATGAAACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| 3UTR-3UTR CAA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACATGCCATACAATATGTaGAATGTCCGAGACAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: VYILWHYVQKVADFTEAYMPYNM*NVRDRK Trigger: CTTTCTGTCTCGGACATTCAACATATTGTATGGCAT...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| 3UTR TCA 72 bp | TTTACTGAGGCTTACTTAATATGCCATACAATATGTTaGATGTCCGAGACAGAAAGAAGCACTGTAAAAATG | + |
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Preference number: 3 (lower is better) Translates to: FTEAYLICHTIC*MSETERSTVKM Trigger: CATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCATATTAAGTAAGCCTCAGTAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | GTTTCATGGAACATGAACTGTGCTTTTCTCAGATGCAGCTCAGGTTCTACAGTTTCACGGGCTCCGGGGTaGGCCTCCGCGACGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: VSWNMNCAFLRCSSGSTVSRAPG*ASATWG Trigger: ACCCCACGTCGCGGAGGCCCACCCCGGAGCCCGTGA...AACTGTAGAACCTGAGCTGCATCTGAGAAAAGCACAGTTCATGTTCCATGAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR TCA 90 bp | ACATGTTTCATGGAACATGAACTGTGCTTTTCTCAGATGCAGCTCAGGTTCTACGCTGGAGGCTCTGCGTaGTGTAGTCCAGGCGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: TCFMEHELCFSQMQLRFYAGGSA*CSPGGD Trigger: GTCGCCGCCTGGACTACATCACGCAGAGCCTCCAGC...GTAGAACCTGAGCTGCATCTGAGAAAAGCACAGTTCATGTTCCATGAAACATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | ACAGGCAAGAGCAGAGACCCCGAACAAACAAAGAACACACTTTTTATACCTTGTCGGCCGACACCTCCTTaGTGCTGCTCACTCGCACGG | + |
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Preference number: 4 (lower is better) Translates to: TGKSRDPEQTKNTLFIPCRPTPP*CCSLAR Trigger: CCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCG...ACAAGGTATAAAAAGTGTGTTCTTTGTTTGTTCGGGGTCTCTGCTCTTGCCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | ATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAATGTATCACGGGCTCCGGGGTaGGCCTCCGCGACGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: MPYNMLNVRDRKKHCKNVSRAPG*ASATWG Trigger: ACCCCACGTCGCGGAGGCCCACCCCGGAGCCCGTGA...TACATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR TCA 90 bp | TGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACTTAATATGCCATGCTGGAGGCTCTGCGTaGTGTAGTCCAGGCGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: WHYVQKVADFTEAYLICHAGGSA*CSPGGD Trigger: GTCGCCGCCTGGACTACATCACGCAGAGCCTCCAGC...ATGGCATATTAAGTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACCGGCCGACACCTCCTTaGTGCTGCTCACTCGCACGG | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYRPTPP*CCSLAR Trigger: CCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCG...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACCCGACACCTCCTTGGTaGTGCTCACTCGCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYPTPPW*CSLARS Trigger: TGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGG...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | TGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACTTAATATGCCATCCGACACCTCCTTGGTaGTGCTCACTCGCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: WHYVQKVADFTEAYLICHPTPPW*CSLARS Trigger: TGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGG...ATGGCATATTAAGTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | ACATGTTTCATGGAACATGAACTGTGCTTTTCTCAGATGCAGCTCAGGTTCTACGGTTTTCCCAGAGTTTaGCCAACGAGGTCACAGACT | + |
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Preference number: 4 (lower is better) Translates to: TCFMEHELCFSQMQLRFYGFPRV*PTRSQT Trigger: AGTCTGTGACCTCGTTGGCCAAACTCTGGGAAAACC...GTAGAACCTGAGCTGCATCTGAGAAAAGCACAGTTCATGTTCCATGAAACATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | ATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAATGTAACACCTCCTTGGTGCTaGTCACTCGCACGGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: MPYNMLNVRDRKKHCKNVTPPWC*SLARSP Trigger: TGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGT...TACATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACACACCTCCTTGGTGCTaGTCACTCGCACGGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYTPPWC*SLARSP Trigger: TGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGT...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GCCAGCTTCTTTATCTGGCTCTGTACTTGGCCCACTAATATAGTTTGGAAAGTCGAACACCTTCGAAGCTaGATGGATGGTTGCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: ASFFIWLCTWPTNIVWKVEHLRS*MDGCTF Trigger: AAAAGTGCAACCATCCATGCAGCTTCGAAGGTGTTC...GACTTTCCAAACTATATTAGTGGGCCAAGTACAGAGCCAGATAAAGAAGCTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR TCA 90 bp | TTTCTCAGATGCAGCTCAGGTTCTACAGTTTTATACAACAAATACAAGCAAGACGTTACATTTTCTGCCTaGAACCCCTGCTGCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: FLRCSSGSTVLYNKYKQDVTFSA*NPCCWR Trigger: CCTCCAGCAGCAGGGGTTTCAGGCAGAAAATGTAAC...GTCTTGCTTGTATTTGTTGTATAAAACTGTAGAACCTGAGCTGCATCTGAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GCCAGCTTCTTTATCTGGCTCTGTACTTGGCCCACTAATATAGTTTGGAAAGTCGTTGTACAGTTAATGTaGCTGGCAGTCTGGATAACT | + |
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Preference number: 4 (lower is better) Translates to: ASFFIWLCTWPTNIVWKVVVQLM*LAVWIT Trigger: AGTTATCCAGACTGCCAGGCACATTAACTGTACAAC...GACTTTCCAAACTATATTAGTGGGCCAAGTACAGAGCCAGATAAAGAAGCTGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR TCA 90 bp | TGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACTTAATATGCCATAATGTAATGCAGACCTaGAACCCCTGCTGCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: WHYVQKVADFTEAYLICHNVMQT*NPCCWR Trigger: CCTCCAGCAGCAGGGGTTTCAGGTCTGCATTACATT...ATGGCATATTAAGTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034783.6 |
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| CDS-3UTR TCA 90 bp | TGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACTTAATATGCCATAGGTCACAGACTTCCTaGGCTTTGCGCCATGCATTC | + |
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Preference number: 4 (lower is better) Translates to: WHYVQKVADFTEAYLICHRSQTS*ALRHAF Trigger: GAATGCATGGCGCAAAGCTCAGGAAGTCTGTGACCT...ATGGCATATTAAGTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR TCA 90 bp | ATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAATGTAAGGTCACAGACTTCCTaGGCTTTGCGCCATGCATTC | + |
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Preference number: 4 (lower is better) Translates to: MPYNMLNVRDRKKHCKNVRSQTS*ALRHAF Trigger: GAATGCATGGCGCAAAGCTCAGGAAGTCTGTGACCT...TACATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | CTTAATATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAACTGAGCTTTGCGCCATaGATTCTCAACAGCAACCAG | + |
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Preference number: 4 (lower is better) Translates to: LNMPYNMLNVRDRKKHCKLSFAP*ILNSNQ Trigger: CTGGTTGCTGTTGAGAATGCATGGCGCAAAGCTCAG...TTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCATATTAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACGGTTTTCCCAGAGTTTaGCCAACGAGGTCACAGACT | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYGFPRV*PTRSQT Trigger: AGTCTGTGACCTCGTTGGCCAAACTCTGGGAAAACC...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | CTTAATATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAGACTTCCTGAGCTTTaGGCCATGCATTCTCAACAG | + |
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Preference number: 4 (lower is better) Translates to: LNMPYNMLNVRDRKKHCKRLPEL*AMHSQQ Trigger: CTGTTGAGAATGCATGGCGCAAAGCTCAGGAAGTCT...TTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCATATTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | TGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACTTAATATGCCATCACAGTTACATTTTCTaGCTGAAACCCCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: WHYVQKVADFTEAYLICHHSYIF*LKPLLL Trigger: CAGCAGCAGGGGTTTCAGGCAGAAAATGTAACTGTG...ATGGCATATTAAGTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACATGTGCCTGGCAGTCTaGATAACTGATGATCATCCG | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYMCLAV*ITDDHP Trigger: CGGATGATCATCAGTTATCCAGACTGCCAGGCACAT...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | ATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAATGTAATGTGCCTGGCAGTCTaGATAACTGATGATCATCCG | + |
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Preference number: 4 (lower is better) Translates to: MPYNMLNVRDRKKHCKNVMCLAV*ITDDHP Trigger: CGGATGATCATCAGTTATCCAGACTGCCAGGCACAT...TACATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACGAACACCTTCGAAGCTaGATGGATGGTTGCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYEHLRS*MDGCTF Trigger: AAAAGTGCAACCATCCATGCAGCTTCGAAGGTGTTC...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACGTTGTACAGTTAATGTaGCTGGCAGTCTGGATAACT | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYVVQLM*LAVWIT Trigger: AGTTATCCAGACTGCCAGGCACATTAACTGTACAAC...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CCA 90 bp | ATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAATGTAATTCTCAACAGAACCTaGTGTGTGATAGAACTCAGG | + |
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Preference number: 4 (lower is better) Translates to: MPYNMLNVRDRKKHCKNVILNRT*CVIELR Trigger: CCTGAGTTCTATCACACACCAGGTTCTGTTGAGAAT...TACATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACAGCTGCATGGATGGTTaGACTTTTGATTTTCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: VYILWHYVQKVADFTEAYSCMDG*TFDFLL Trigger: CAACAGAAAATCAAAAGTGCAACCATCCATGCAGCT...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR GCA 90 bp | CTTAATATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAGCTGCATGGATGGTTaGACTTTTGATTTTCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: LNMPYNMLNVRDRKKHCKSCMDG*TFDFLL Trigger: CAACAGAAAATCAAAAGTGCAACCATCCATGCAGCT...TTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCATATTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 90 bp | CCTTGGTGCTGCTCACTCGCACGGTCACCAGCGCTCGGTCGGGGCTaGCGGACACCTCGGCCGCGCCGCTCACGTGGACCTCACGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: PWCCSLARSPALGRG*RTPRPRRSRGPHGL Trigger: GAGCCCGTGAGGTCCACGTGAGCGGCGCGGCCGAGGTGTCCGCCAGCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS GCA 90 bp | GGCGGCGACACACACTCTTCTTGGCCTCGGCCGACACCTCCTTGGTaGTGCTCACTCGCACGGTCACCAGCGCTCGGTCGGGGCTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: GGDTHSSWPRPTPPW*CSLARSPALGRGWR Trigger: CCGCCAGCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTCGCCGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 90 bp | CCAGGCGGCGACACACACTCTTCTTGGCCTCGGCCGACACCTCCTTaGTGCTGCTCACTCGCACGGTCACCAGCGCTCGGTCGGGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: PGGDTHSSWPRPTPP*CCSLARSPALGRGW Trigger: CCAGCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTCGCCGCCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS GCA 90 bp | GGCGACACACACTCTTCTTGGCCTCGGCCGACACCTCCTTGGTGCTaGTCACTCGCACGGTCACCAGCGCTCGGTCGGGGCTGGCGGACA | + |
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Preference number: 5 (lower is better) Translates to: GDTHSSWPRPTPPWC*SLARSPALGRGWRT Trigger: TGTCCGCCAGCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTCGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS TCA 90 bp | CAGTTACATTTTCTGCCTGAAACCCCTGCTGCTGGAGGCTCTGCGTaGTGTAGTCCAGGCGGCGACACACACTCTTCTTGGCCTCGGCCG | + |
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Preference number: 5 (lower is better) Translates to: QLHFLPETPAAGGSA*CSPGGDTHSSWPRP Trigger: CGGCCGAGGCCAAGAAGAGTGTGTGTCGCCGCCTGGACTACATCACGCAGAGCCTCCAGCAGCAGGGGTTTCAGGCAGAAAATGTAACTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS-3UTR CAA 90 bp | GGTTTGCATAGGGTGACTATCTTTGGCCTAGTCCCTCACTCTGCCTGCCCTTGTTCGGCCGACACCTCCTaGGTGCTGCTCACTCGCACG | + |
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Preference number: 5 (lower is better) Translates to: GLHRVTIFGLVPHSACPCSADTS*VLLTRT Trigger: CGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGA...ACAAGGGCAGGCAGAGTGAGGGACTAGGCCAAAGATAGTCACCCTATGCAAACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS GCA 90 bp | CAGAGTTTGGCCAACGAGGTCACAGACTTCCTGAGCTTTGCGCCATaGATTCTCAACAGCAACCAGACAGGCCTGCCGCCGAAGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: QSLANEVTDFLSFAP*ILNSNQTGLPPKIL Trigger: GAGAATCTTCGGCGGCAGGCCTGTCTGGTTGCTGTTGAGAATGCATGGCGCAAAGCTCAGGAAGTCTGTGACCTCGTTGGCCAAACTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS GCA 90 bp | GTTTTCCCAGAGTTTGGCCAACGAGGTCACAGACTTCCTGAGCTTTaGGCCATGCATTCTCAACAGCAACCAGACAGGCCTGCCGCCGAA | + |
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Preference number: 5 (lower is better) Translates to: VFPEFGQRGHRLPEL*AMHSQQQPDRPAAE Trigger: TTCGGCGGCAGGCCTGTCTGGTTGCTGTTGAGAATGCATGGCGCAAAGCTCAGGAAGTCTGTGACCTCGTTGGCCAAACTCTGGGAAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 90 bp | AACAGCAACCAGACAGGCCTGCCGCCGAAGATTCTCAACAGAACCTaGTGTGTGATAGAACTCAGGTGGGCTGATGACAACAGAGCTATC | + |
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Preference number: 5 (lower is better) Translates to: NSNQTGLPPKILNRT*CVIELRWADDNRAI Trigger: GATAGCTCTGTTGTCATCAGCCCACCTGAGTTCTATCACACACCAGGTTCTGTTGAGAATCTTCGGCGGCAGGCCTGTCTGGTTGCTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CAA 90 bp | CTTAATATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAATCGGCCGACACCTCCTaGGTGCTGCTCACTCGCACG | + |
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Preference number: 5 (lower is better) Translates to: LNMPYNMLNVRDRKKHCKSADTS*VLLTRT Trigger: CGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGA...TTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCATATTAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CAA 90 bp | GTATATATTCTGTGGCATTATGTTCAAAAAGTGGCAGATTTTACTGAGGCTTACTGGATGGTTGCACTTTaGATTTTCTGTTGTACAGTT | + |
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Preference number: 5 (lower is better) Translates to: VYILWHYVQKVADFTEAYWMVAL*IFCCTV Trigger: AACTGTACAACAGAAAATCAAAAGTGCAACCATCCA...GTAAGCCTCAGTAAAATCTGCCACTTTTTGAACATAATGCCACAGAATATATAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS-3UTR CAA 90 bp | ATGCCATACAATATGTTGAATGTCCGAGACAGAAAGAAGCACTGTAAAAATGTATGGATGGTTGCACTTTaGATTTTCTGTTGTACAGTT | + |
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Preference number: 5 (lower is better) Translates to: MPYNMLNVRDRKKHCKNVWMVAL*IFCCTV Trigger: AACTGTACAACAGAAAATCAAAAGTGCAACCATCCA...TACATTTTTACAGTGCTTCTTTCTGTCTCGGACATTCAACATATTGTATGGCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 72 bp | TGCTCACTCGCACGGTCACCAGCGCTCGGTCGGGGCTaGCGGACACCTCGGCCGCGCCGCTCACGTGGACCT | + |
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Preference number: 6 (lower is better) Translates to: CSLARSPALGRG*RTPRPRRSRGP Trigger: AGGTCCACGTGAGCGGCGCGGCCGAGGTGTCCGCCAGCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 72 bp | CGGCCGATCGGCTGCGCCTCCGCGGCCGAGATCGGATaGTTTTCCCGGCCCCGGTCAGCCCAGGGAACCAGT | + |
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Preference number: 6 (lower is better) Translates to: RPIGCASAAEIG*FSRPRSAQGTS Trigger: ACTGGTTCCCTGGGCTGACCGGGGCCGGGAAAACCATCCGATCTCGGCCGCGGAGGCGCAGCCGATCGGCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CAA 90 bp | TCCAGGCGGCGACACACACTCTTCTTGGCCTCGGCCGACACCTCCTaGGTGCTGCTCACTCGCACGGTCACCAGCGCTCGGTCGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SRRRHTLFLASADTS*VLLTRTVTSARSGL Trigger: CAGCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTCGCCGCCTGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS GCA 72 bp | CACTCTTCTTGGCCTCGGCCGACACCTCCTTGGTGCTaGTCACTCGCACGGTCACCAGCGCTCGGTCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: HSSWPRPTPPWC*SLARSPALGRG Trigger: GCCCCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS TCA 72 bp | TTTCCCGGCCCCGGTCAGCCCAGGGAACCAGTTCCATaGACACCCGCGATGCAGGGGCGGGTTGCAGCGACA | + |
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Preference number: 6 (lower is better) Translates to: FPGPGQPREPVP*TPAMQGRVAAT Trigger: TGTCGCTGCAACCCGCCCCTGCATCGCGGGTGTTCATGGAACTGGTTCCCTGGGCTGACCGGGGCCGGGAAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS GCA 72 bp | ACACACTCTTCTTGGCCTCGGCCGACACCTCCTTGGTaGTGCTCACTCGCACGGTCACCAGCGCTCGGTCGG | + |
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Preference number: 6 (lower is better) Translates to: THSSWPRPTPPW*CSLARSPALGR Trigger: CCGACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGT 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CAA 72 bp | CGACACACACTCTTCTTGGCCTCGGCCGACACCTCCTaGGTGCTGCTCACTCGCACGGTCACCAGCGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RHTLFLASADTS*VLLTRTVTSAR Trigger: CCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTCG 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 72 bp | GACACACACTCTTCTTGGCCTCGGCCGACACCTCCTTaGTGCTGCTCACTCGCACGGTCACCAGCGCTCGGT | + |
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Preference number: 6 (lower is better) Translates to: DTHSSWPRPTPP*CCSLARSPALG Trigger: ACCGAGCGCTGGTGACCGTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS TCA 72 bp | TGCAGACCTGAAACCCCTGCTGCTGGAGGCTCTGCGTaGTGTAGTCCAGGCGGCGACACACACTCTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: CRPETPAAGGSA*CSPGGDTHSSW Trigger: CCAAGAAGAGTGTGTGTCGCCGCCTGGACTACATCACGCAGAGCCTCCAGCAGCAGGGGTTTCAGGTCTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034783.6 |
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| CDS GCA 72 bp | GCCAACGAGGTCACAGACTTCCTGAGCTTTGCGCCATaGATTCTCAACAGCAACCAGACAGGCCTGCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: ANEVTDFLSFAP*ILNSNQTGLPP Trigger: CGGCGGCAGGCCTGTCTGGTTGCTGTTGAGAATGCATGGCGCAAAGCTCAGGAAGTCTGTGACCTCGTTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS TCA 72 bp | TTTCTGCCTGAAACCCCTGCTGCTGGAGGCTCTGCGTaGTGTAGTCCAGGCGGCGACACACACTCTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: FLPETPAAGGSA*CSPGGDTHSSW Trigger: CCAAGAAGAGTGTGTGTCGCCGCCTGGACTACATCACGCAGAGCCTCCAGCAGCAGGGGTTTCAGGCAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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| CDS GCA 72 bp | GAGTTTGGCCAACGAGGTCACAGACTTCCTGAGCTTTaGGCCATGCATTCTCAACAGCAACCAGACAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: EFGQRGHRLPEL*AMHSQQQPDRP Trigger: AGGCCTGTCTGGTTGCTGTTGAGAATGCATGGCGCAAAGCTCAGGAAGTCTGTGACCTCGTTGGCCAAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CCA 72 bp | CAGACAGGCCTGCCGCCGAAGATTCTCAACAGAACCTaGTGTGTGATAGAACTCAGGTGGGCTGATGACAAC | + |
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Preference number: 6 (lower is better) Translates to: QTGLPPKILNRT*CVIELRWADDN Trigger: GTTGTCATCAGCCCACCTGAGTTCTATCACACACCAGGTTCTGTTGAGAATCTTCGGCGGCAGGCCTGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS CAA 90 bp | TCAAAAGTAATGAACACCTTCGAAGCTGCATGGATGGTTGCACTTTaGATTTTCTGTTGTACAGTTAATGTGCCTGGCAGTCTGGATAAC | + |
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Preference number: 6 (lower is better) Translates to: SKVMNTFEAAWMVAL*IFCCTVNVPGSLDN Trigger: GTTATCCAGACTGCCAGGCACATTAACTGTACAACAGAAAATCAAAAGTGCAACCATCCATGCAGCTTCGAAGGTGTTCATTACTTTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034783.6 ENSMUST00000113245.9 |
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| CDS TCA 72 bp | AATTCAGTAAATGTAATGCAGACCTCGGCTTCCATGTaGTACGCATTTTCTACTCTTCTAATGTTCTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: NSVNVMQTSASM*YAFSTLLMFFV Trigger: GACAAAGAACATTAGAAGAGTAGAAAATGCGTATCACATGGAAGCCGAGGTCTGCATTACATTTACTGAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113245.9 |
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