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Pregenerated sensors for IQCJ (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051777

Ensembl transcript IDs: ENSMUST00000063263.5

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGTCAGGAGAACTGCACTTGCCAGCGTCTGTCCTGCCTGTACAGGTaGGGCAGGTTCCCCCAAGCCCTATCAGGAGTCCTTTCAGGAGGG +
Preference number: 1 (lower is better)
Translates to: RQENCTCQRLSCLYR*GRFPQALSGVLSGG
Trigger: CCCTCCTGAAAGGACTCCTGATAGGGCTTGGGGGAACCTGCCGCACCTGTACAGGCAGGACAGACGCTGGCAAGTGCAGTTCTCCTGACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR-3UTR GCA 90 bp TCCAATGTGGTTCACAAGCGCCCTCTAGTGACCGGGAGGCCAGTAACAGGGATCAGCCATGCAGACTTCTaGACACATTTCAAAGAAAGT +
Preference number: 2 (lower is better)
Translates to: SNVVHKRPLVTGRPVTGISHADF*THFKES
Trigger: ACTTTCTTTGAAATGTGTGCAGAAGTCTGCATGGCT...GATCCCTGTTACTGGCCTCCCGGTCACTAGAGGGCGCTTGTGAACCACATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR-3UTR GCA 90 bp CATTTAGCCACACTCAATCCATTTCAGCAATTTCAGTCTGTGATCAACTTCAATCATCACATAAGCACATaGCAGAGAAAACACACCAGA +
Preference number: 2 (lower is better)
Translates to: HLATLNPFQQFQSVINFNHHIST*QRKHTR
Trigger: TCTGGTGTGTTTTCTCTGGCATGTGCTTATGTGATG...ATTGAAGTTGATCACAGACTGAAATTGCTGAAATGGATTGAGTGTGGCTAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR GCA 72 bp AACTGCACTTGCCAGCGTCTGTCCTGCCTGTACAGGTaGGGCAGGTTCCCCCAAGCCCTATCAGGAGTCCTT +
Preference number: 3 (lower is better)
Translates to: NCTCQRLSCLYR*GRFPQALSGVL
Trigger: AAGGACTCCTGATAGGGCTTGGGGGAACCTGCCGCACCTGTACAGGCAGGACAGACGCTGGCAAGTGCAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR TCA 72 bp ACCGGGAGGCCAGTAACAGGGATCCCTTTCTCCAAATaGCCAAATGTTGGGTCGATTAAACAGATCTGCCGT +
Preference number: 3 (lower is better)
Translates to: TGRPVTGIPFSK*PNVGSIKQICR
Trigger: ACGGCAGATCTGTTTAATCGACCCAACATTTGGTCATTTGGAGAAAGGGATCCCTGTTACTGGCCTCCCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR TCA 72 bp GCAACGTCGCACAGAATCCCCACTCTGTGGACGCATTaGGTTCATTTTTGTATCATGAATCTTGTCTTAGTT +
Preference number: 3 (lower is better)
Translates to: ATSHRIPTLWTH*VHFCIMNLVLV
Trigger: AACTAAGACAAGATTCATGATACAAAAATGAACTCAATGCGTCCACAGAGTGGGGATTCTGTGCGACGTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR-3UTR CAA 90 bp GCAACCCATTTAGCCACACTCAATCCATTTCAGCAATTTCAGTCTGTGATCAACCACTCTGTGGACGCATaGAGTTCATTTTTGTATCAT +
Preference number: 3 (lower is better)
Translates to: ATHLATLNPFQQFQSVINHSVDA*SSFLYH
Trigger: ATGATACAAAAATGAACTCAATGCGTCCACAGAGTG...GTTGATCACAGACTGAAATTGCTGAAATGGATTGAGTGTGGCTAAATGGGTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
CDS-3UTR GCA 90 bp CACCGCCCAGCATTTTCCAATGTGGTTCACAAGCGCCCTCTAGTGACCGGGAGGCACTCACGGGTGTGCTaGTGTCGGAGAAGGTGTTCA +
Preference number: 4 (lower is better)
Translates to: HRPAFSNVVHKRPLVTGRHSRVC*CRRRCS
Trigger: TGAACACCTTCTCCGACAGCAGCACACCCGTGAGTG...CCTCCCGGTCACTAGAGGGCGCTTGTGAACCACATTGGAAAATGCTGGGCGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
CDS-3UTR GCA 90 bp CAAGCCATGCAGACTTCTGCACACATTTCAAAGAAAGTAACTTTTGCCATATCTAGACACTCACGGGTGTaGTGCTGTCGGAGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: QAMQTSAHISKKVTFAISRHSRV*CCRRRC
Trigger: ACACCTTCTCCGACAGCAGCACACCCGTGAGTGTCT...AGATATGGCAAAAGTTACTTTCTTTGAAATGTGTGCAGAAGTCTGCATGGCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
3UTR CAA 72 bp AGCAACGTCGCACAGAATCCCCACTCTGTGGACGCATaGAGTTCATTTTTGTATCATGAATCTTGTCTTAGT +
Preference number: 4 (lower is better)
Translates to: SNVAQNPHSVDA*SSFLYHESCLS
Trigger: ACTAAGACAAGATTCATGATACAAAAATGAACTCAATGCGTCCACAGAGTGGGGATTCTGTGCGACGTTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5
CDS TCA 72 bp TCACGGGTGTGCTGCTGTCGGAGAAGGTGTTCATGCTaGCAGAGCTGCTCAGCTTGTCTGAAGAGACAGAAG +
Preference number: 6 (lower is better)
Translates to: SRVCCCRRRCSC*QSCSACLKRQK
Trigger: CTTCTGTCTCTTCAGACAAGCTGAGCAGCTCTGTCAGCATGAACACCTTCTCCGACAGCAGCACACCCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063263.5