Pregenerated sensors for IQCF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041009Ensembl transcript IDs: ENSMUST00000085111.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGATATCAAGCCGTAAACGTAGTTTGTTTCCTACAAGTTCATAGCTaGCCTGGAAAAAGCCACGGGTGCGGCAGTTATACCAGCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: RYQAVNVVCFLQVHS*PGKSHGCGSYTSAT Trigger: CGTGGCGCTGGTATAACTGCCGCACCCGTGGCTTTTTCCAGGGCAGCTATGAACTTGTAGGAAACAAACTACGTTTACGGCTTGATATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085111.5 |
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| CDS GCA 72 bp | GCCGTAAACGTAGTTTGTTTCCTACAAGTTCATAGCTaGCCTGGAAAAAGCCACGGGTGCGGCAGTTATACC | + |
|
Preference number: 6 (lower is better) Translates to: AVNVVCFLQVHS*PGKSHGCGSYT Trigger: GGTATAACTGCCGCACCCGTGGCTTTTTCCAGGGCAGCTATGAACTTGTAGGAAACAAACTACGTTTACGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085111.5 |
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| CDS CAA 72 bp | GACCCACGACTGAATAAGGACGCAGGCCCTTGTTTCTaGTGCCATCAAGTGCAGGATTATCAGTCGATTCTT | + |
|
Preference number: 6 (lower is better) Translates to: DPRLNKDAGPCF*CHQVQDYQSIL Trigger: AAGAATCGACTGATAATCCTGCACTTGATGGCACAAGAAACAAGGGCCTGCGTCCTTATTCAGTCGTGGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085111.5 |
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| CDS GCA 72 bp | CCACGACTGAATAAGGACGCAGGCCCTTGTTTCTTGTaGCATCAAGTGCAGGATTATCAGTCGATTCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: PRLNKDAGPCFL*HQVQDYQSILF Trigger: GAAAAGAATCGACTGATAATCCTGCACTTGATGGCACAAGAAACAAGGGCCTGCGTCCTTATTCAGTCGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085111.5 |
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| CDS GCA 72 bp | ATAAGGACGCAGGCCCTTGTTTCTTGTGCCATCAAGTaGAGGATTATCAGTCGATTCTTTTCCTGTCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: IRTQALVSCAIK*RIISRFFSCLL Trigger: CAAAAGACAGGAAAAGAATCGACTGATAATCCTGCACTTGATGGCACAAGAAACAAGGGCCTGCGTCCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085111.5 |
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