Pregenerated sensors for IQCF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00001074846

Ensembl transcript IDs: ENSMUST00010126032.3, ENSMUST00010126033.2, ENSMUST00010126065.2, ENSMUST00010181659.1, ENSMUST00010181660.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CGCCGTTTAAGTACCTGTCTGTGGAGGATGCTTCTCCACCAGCACTaGATCACCCAGACATTGAGGGCAGCAGCCAGCAGAGTTTGCCTC	+
Preference number: 5 (lower is better) Translates to: RRLSTCLWRMLLHQH*ITQTLRAAASRVCL Trigger: GAGGCAAACTCTGCTGGCTGCTGCCCTCAATGTCTGGGTGATTCAGTGCTGGTGGAGAAGCATCCTCCACAGACAGGTACTTAAACGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS TCA 90 bp	ACTGGACCACACAGAGTGTGTTGCATATTTGATTGCATATCTGATTaGAGTATCGACGGCAATTCCACATGCGAACCCAGGCCTGGAGCC	+
Preference number: 5 (lower is better) Translates to: TGPHRVCCIFDCISD*SIDGNSTCEPRPGA Trigger: GGCTCCAGGCCTGGGTTCGCATGTGGAATTGCCGTCGATACTTCAATCAGATATGCAATCAAATATGCAACACACTCTGTGTGGTCCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS TCA 90 bp	AGGATTTCAATGTGGAACTCTGGTTGCCTGGAAACAACTTCATATTaGACCTGCAAAATGTCATCGTTCTTGAAGGTAAAGCTGTTTTCG	+
Preference number: 5 (lower is better) Translates to: RISMWNSGCLETTSY*TCKMSSFLKVKLFS Trigger: CGAAAACAGCTTTACCTTCAAGAACGATGACATTTTGCAGGTTCAATATGAAGTTGTTTCCAGGCAACCAGAGTTCCACATTGAAATCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS CAA 72 bp	AATCACCCAGACATTGAGGGCAGCAGCCAGCAGAGTTaGCCTCACCAGGAATCCGCGCCACAAGGCCTGGAT	+
Preference number: 6 (lower is better) Translates to: NHPDIEGSSQQS*PHQESAPQGLD Trigger: ATCCAGGCCTTGTGGCGCGGATTCCTGGTGAGGCAAACTCTGCTGGCTGCTGCCCTCAATGTCTGGGTGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS TCA 72 bp	CACAGAGTGTGTTGCATATTTGATTGCATATCTGATTaGAGTATCGACGGCAATTCCACATGCGAACCCAGG	+
Preference number: 6 (lower is better) Translates to: HRVCCIFDCISD*SIDGNSTCEPR Trigger: CCTGGGTTCGCATGTGGAATTGCCGTCGATACTTCAATCAGATATGCAATCAAATATGCAACACACTCTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS GCA 72 bp	GTGAAGTTTCCCCAACTCGGTTCCCTCAGATCTATCTaGCTCTTGAGTTTCACATTTCTCTTCTTGGATTTG	+
Preference number: 6 (lower is better) Translates to: VKFPQLGSLRSI*LLSFTFLFLDL Trigger: CAAATCCAAGAAGAGAAATGTGAAACTCAAGAGGCAGATAGATCTGAGGGAACCGAGTTGGGGAAACTTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00010126032.3 ENSMUST00010181659.1
CDS CAA 72 bp	TTCGGCGGACTGGACCACACAGAGTGTGTTGCATATTaGATTGCATATCTGATTGAAGTATCGACGGCAATT	+
Preference number: 6 (lower is better) Translates to: FGGLDHTECVAY*IAYLIEVSTAI Trigger: AATTGCCGTCGATACTTCAATCAGATATGCAATCAAATATGCAACACACTCTGTGTGGTCCAGTCCGCCGAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS TCA 72 bp	ATGTGGAACTCTGGTTGCCTGGAAACAACTTCATATTaGACCTGCAAAATGTCATCGTTCTTGAAGGTAAAG	+
Preference number: 6 (lower is better) Translates to: MWNSGCLETTSY*TCKMSSFLKVK Trigger: CTTTACCTTCAAGAACGATGACATTTTGCAGGTTCAATATGAAGTTGTTTCCAGGCAACCAGAGTTCCACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00010181659.1 ENSMUST00010181660.1
CDS GCA 72 bp	GCTTCAGTTTCTTCATCTTGGTTTTGCTTCTCTAGTTaGACCTCGTTAACGTTTTCTGTTTCTTCTGGTGTT	+
Preference number: 6 (lower is better) Translates to: ASVSSSWFCFSS*TSLTFSVSSGV Trigger: AACACCAGAAGAAACAGAAAACGTTAACGAGGTGCAACTAGAGAAGCAAAACCAAGATGAAGAAACTGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00010126032.3 ENSMUST00010126033.2 ENSMUST00010126065.2 ENSMUST00010181659.1