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Pregenerated sensors for IQCF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066383

Ensembl transcript IDs: ENSMUST00000085114.8, ENSMUST00000215037.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCACAATACAAGGCCCCGAACCCAGCAAGACCTCCAGCTCAAGATaGATCTGGCTGGTCGAAATTCGGTATTGGCCCTTGATAACACCC +
Preference number: 1 (lower is better)
Translates to: VTIQGPEPSKTSSSR*IWLVEIRYWPLITP
Trigger: GGGTGTTATCAAGGGCCAATACCGAATTTCGACCAGCCAGATGCATCTTGAGCTGGAGGTCTTGCTGGGTTCGGGGCCTTGTATTGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
3UTR CCA 90 bp ATACAAGGCCCCGAACCCAGCAAGACCTCCAGCTCAAGATGCATCTaGCTGGTCGAAATTCGGTATTGGCCCTTGATAACACCCCGTGAA +
Preference number: 1 (lower is better)
Translates to: IQGPEPSKTSSSRCI*LVEIRYWPLITPRE
Trigger: TTCACGGGGTGTTATCAAGGGCCAATACCGAATTTCGACCAGCCAGATGCATCTTGAGCTGGAGGTCTTGCTGGGTTCGGGGCCTTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
3UTR-3UTR TCA 90 bp GTGTACCGCGCCACCAAGCTTGGATCTTTACAACTTGGTCCTTTTCAGAAAGCTAGATCACCATGTTCCTaGGTCTCACTCAAGCCTGGC +
Preference number: 2 (lower is better)
Translates to: VYRATKLGSLQLGPFQKARSPCS*VSLKPG
Trigger: GCCAGGCTTGAGTGAGACTCAGGAACATGGTGATCT...AGCTTTCTGAAAAGGACCAAGTTGTAAAGATCCAAGCTTGGTGGCGCGGTACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
3UTR CCA 72 bp CAGGACTGCAACCTGACGACTGCCCACTGCTCCTGTTaGAAGGTATCCAGCATGGACTGCCGCCTCTTCTCC +
Preference number: 3 (lower is better)
Translates to: QDCNLTTAHCSC*KVSSMDCRLFS
Trigger: GGAGAAGAGGCGGCAGTCCATGCTGGATACCTTCCAACAGGAGCAGTGGGCAGTCGTCAGGTTGCAGTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
3UTR TCA 72 bp CTCTGGCTTCAGGCCACCAGCAGATCACCATGTTCCTaGGTCTCACTCAAGCCTGGCATTCCAGCTTTCCCA +
Preference number: 3 (lower is better)
Translates to: LWLQATSRSPCS*VSLKPGIPAFP
Trigger: TGGGAAAGCTGGAATGCCAGGCTTGAGTGAGACTCAGGAACATGGTGATCTGCTGGTGGCCTGAAGCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
3UTR CCA 72 bp CCCGAACCCAGCAAGACCTCCAGCTCAAGATGCATCTaGCTGGTCGAAATTCGGTATTGGCCCTTGATAACA +
Preference number: 3 (lower is better)
Translates to: PEPSKTSSSRCI*LVEIRYWPLIT
Trigger: TGTTATCAAGGGCCAATACCGAATTTCGACCAGCCAGATGCATCTTGAGCTGGAGGTCTTGCTGGGTTCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
3UTR CAA 72 bp CAGCGACCGACGTACCAGTGTACCGCGCCACCAAGCTaGGATCTTTACAACTTGGTCCTTTTCAGAAAGCTC +
Preference number: 4 (lower is better)
Translates to: QRPTYQCTAPPS*DLYNLVLFRKL
Trigger: GAGCTTTCTGAAAAGGACCAAGTTGTAAAGATCCAAGCTTGGTGGCGCGGTACACTGGTACGTCGGTCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
CDS-3UTR TCA 90 bp GTGTACCGCGCCACCAAGCTTGGATCTTTACAACTTGGTCCTTTTCAGAAAGCTGGCTGCTGCTTCTCCTaGGGAGCATCGTCAGTAGGT +
Preference number: 4 (lower is better)
Translates to: VYRATKLGSLQLGPFQKAGCCFS*GASSVG
Trigger: ACCTACTGACGATGCTCCTCAGGAGAAGCAGCAGCC...AGCTTTCTGAAAAGGACCAAGTTGTAAAGATCCAAGCTTGGTGGCGCGGTACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
CDS-3UTR GCA 90 bp AGTGTACCGCGCCACCAAGCTTGGATCTTTACAACTTGGTCCTTTTCAGAAAGCAGCATCGTCAGTAGGTaGATTAAGTTCTTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: SVPRHQAWIFTTWSFSESSIVSR*IKFFRL
Trigger: AAGCCTGAAGAACTTAATGCACCTACTGACGATGCT...GCTTTCTGAAAAGGACCAAGTTGTAAAGATCCAAGCTTGGTGGCGCGGTACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
CDS TCA 90 bp GCCTTCTCTGTTTCTGAGGATAGATCAGCTGGCTGCTGCTTCTCCTaGGGAGCATCGTCAGTAGGTGCATTAAGTTCTTCAGGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: AFSVSEDRSAGCCFS*GASSVGALSSSGFC
Trigger: GCAGAAGCCTGAAGAACTTAATGCACCTACTGACGATGCTCCTCAGGAGAAGCAGCAGCCAGCTGATCTATCCTCAGAAACAGAGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085114.8
ENSMUST00000215037.2
CDS-3UTR CAA 90 bp ACCAGTGTACCGCGCCACCAAGCTTGGATCTTTACAACTTGGTCCTTTTCAGAAAAAACCTGTGCGCCTTaGCCTTCTCTGTTTCTGAGG +
Preference number: 5 (lower is better)
Translates to: TSVPRHQAWIFTTWSFSEKTCAP*PSLFLR
Trigger: CCTCAGAAACAGAGAAGGCAAAGGCGCACAGGTTTT...TTCTGAAAAGGACCAAGTTGTAAAGATCCAAGCTTGGTGGCGCGGTACACTGGT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000215037.2
CDS GCA 72 bp TGGCTGCTGCTTCTCCTGAGGAGCATCGTCAGTAGGTaGATTAAGTTCTTCAGGCTTCTGCTGTTCCTCACC +
Preference number: 6 (lower is better)
Translates to: WLLLLLRSIVSR*IKFFRLLLFLT
Trigger: GGTGAGGAACAGCAGAAGCCTGAAGAACTTAATGCACCTACTGACGATGCTCCTCAGGAGAAGCAGCAGCCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085114.8
ENSMUST00000215037.2
CDS TCA 72 bp GTTTCTGAGGATAGATCAGCTGGCTGCTGCTTCTCCTaGGGAGCATCGTCAGTAGGTGCATTAAGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: VSEDRSAGCCFS*GASSVGALSSS
Trigger: TGAAGAACTTAATGCACCTACTGACGATGCTCCTCAGGAGAAGCAGCAGCCAGCTGATCTATCCTCAGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085114.8
ENSMUST00000215037.2