RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IQCE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036555

Ensembl transcript IDs: ENSMUST00000041783.14, ENSMUST00000077890.12, ENSMUST00000129704.2, ENSMUST00000135028.5, ENSMUST00000142081.6

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGCTGCCTGCCTCCTGGCCCTGCTGCCTTGCCTTGTGTCTGGGTaGCCTGAGCCATCCTCGGGCTGCTTCTCATTAGTGGCTGGACCA +
Preference number: 1 (lower is better)
Translates to: WAACLLALLPCLVSG*PEPSSGCFSLVAGP
Trigger: TGGTCCAGCCACTAATGAGAAGCAGCCCGAGGATGGCTCAGGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCAGGCAGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp GATGCAGACAGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTGGGTaGAGAGCACAGAACACAGGACGGACACCTGCCAAAGGCAGAGGC +
Preference number: 1 (lower is better)
Translates to: DADSQGQSALAMARG*RAQNTGRTPAKGRG
Trigger: GCCTCTGCCTTTGGCAGGTGTCCGTCCTGTGTTCTGTGCTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCTGCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp TGCCTGCCTCCTGGCCCTGCTGCCTTGCCTTGTGTCTGGGTGACCTaGGCCATCCTCGGGCTGCTTCTCATTAGTGGCTGGACCACTCTG +
Preference number: 1 (lower is better)
Translates to: CLPPGPAALPCVWVT*AILGLLLISGWTTL
Trigger: CAGAGTGGTCCAGCCACTAATGAGAAGCAGCCCGAGGATGGCTCAGGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCAGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp CAGTGGCACATGGACACTCCTGGCCCCGGGAAAGGTACAGGCACATaGGGGCCACCTGTAGCCGCCGTCTTGTGTCTTAGTGGGTGGTGT +
Preference number: 1 (lower is better)
Translates to: QWHMDTPGPGKGTGT*GPPVAAVLCLSGWC
Trigger: ACACCACCCACTAAGACACAAGACGGCGGCTACAGGTGGCCCTCATGTGCCTGTACCTTTCCCGGGGCCAGGAGTGTCCATGTGCCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp GAAGTTTGCTGCTTCTTAAGGCCCCACTGCCAGTCCACAGCTGGCTaGGTCCAAGACCAGCACACTCCCAGAGGGCTTGGCCCAACCCAC +
Preference number: 1 (lower is better)
Translates to: EVCCFLRPHCQSTAG*VQDQHTPRGLGPTH
Trigger: GTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp CTTTCACTTTTTCAGCTCTGCGCACAGGTCAGCTACAGCAGTGAGTaGGGCCTCGGTCAGCAGACTGACAGCCACCCATCGGGCGGGGTC +
Preference number: 1 (lower is better)
Translates to: LSLFQLCAQVSYSSE*GLGQQTDSHPSGGV
Trigger: GACCCCGCCCGATGGGTGGCTGTCAGTCTGCTGACCGAGGCCTCACTCACTGCTGTAGCTGACCTGTGCGCAGAGCTGAAAAAGTGAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp GGCAATGGCGCGTGGGTGGAGAGCACAGAACACAGGACGGACACCTaGCAAAGGCAGAGGCTTCAGGCTTCACCCTCATTTACTGGGGCA +
Preference number: 1 (lower is better)
Translates to: GNGAWVESTEHRTDT*QRQRLQASPSFTGA
Trigger: TGCCCCAGTAAATGAGGGTGAAGCCTGAAGCCTCTGCCTTTGGCAGGTGTCCGTCCTGTGTTCTGTGCTCTCCACCCACGCGCCATTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp ACAAGGGACCAACACCTCAAGCTGCCAGATGCTGAGGGTGCCAGATaGCACCGGTCACCTGCAGGTACCTCTGCACACCCAGTTACAGGG +
Preference number: 1 (lower is better)
Translates to: TRDQHLKLPDAEGAR*HRSPAGTSAHPVTG
Trigger: CCCTGTAACTGGGTGTGCAGAGGTACCTGCAGGTGACCGGTGCCATCTGGCACCCTCAGCATCTGGCAGCTTGAGGTGTTGGTCCCTTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp CAGTTAAATAAGGGAGGGGACAGAGCAGTGGCACATGGACACTCCTaGCCCCGGGAAAGGTACAGGCACATGAGGGCCACCTGTAGCCGC +
Preference number: 1 (lower is better)
Translates to: QLNKGGDRAVAHGHS*PRERYRHMRATCSR
Trigger: GCGGCTACAGGTGGCCCTCATGTGCCTGTACCTTTCCCGGGGCCAGGAGTGTCCATGTGCCACTGCTCTGTCCCCTCCCTTATTTAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp GGAATTTGTCCTTCCCTGAGACATATCTCCTCTGGGACAATGGGCTaGCTGCCTCCTGGCCCTGCTGCCTTGCCTTGTGTCTGGGTGACC +
Preference number: 1 (lower is better)
Translates to: GICPSLRHISSGTMG*LPPGPAALPCVWVT
Trigger: GGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAATTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp CTACTCACCCCCAGGGATGAAGTTTGCTGCTTCTTAAGGCCCCACTaGCAGTCCACAGCTGGCTGCGTCCAAGACCAGCACACTCCCAGA +
Preference number: 1 (lower is better)
Translates to: LLTPRDEVCCFLRPH*QSTAGCVQDQHTPR
Trigger: TCTGGGAGTGTGCTGGTCTTGGACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp CCTGTGTTTCAGAGGCAGGTTCTTAGAAAACCCAAGTGCGGGGGCTaGTCAGACCTCATTGCCCACTGGCCAGGCTGGGTGCACAGGTTG +
Preference number: 1 (lower is better)
Translates to: PVFQRQVLRKPKCGG*SDLIAHWPGWVHRL
Trigger: CAACCTGTGCACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTTCTAAGAACCTGCCTCTGAAACACAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp GGGCAGCATCTTCAAGGAGGATGGCTCCAGTCTGTTCCTGGCTTTTaGGGTCCCTGCTGGCTTCCTGTGCACTCTCCAGAGAGGCTCAGA +
Preference number: 1 (lower is better)
Translates to: GQHLQGGWLQSVPGF*GPCWLPVHSPERLR
Trigger: TCTGAGCCTCTCTGGAGAGTGCACAGGAAGCCAGCAGGGACCTCAAAAGCCAGGAACAGACTGGAGCCATCCTCCTTGAAGATGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp CCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTaGAACAAGGGGAGCAGAGGGGAGCAGAGTTTCCCAGATCTTGCT +
Preference number: 1 (lower is better)
Translates to: PPLCASSSAASGGWR*NKGSRGEQSFPDLA
Trigger: AGCAAGATCTGGGAAACTCTGCTCCCCTCTGCTCCCCTTGTTTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp GCTAATTTCACAGACAAGGGACCAACACCTCAAGCTGCCAGATGCTaGGGGTGCCAGATGGCACCGGTCACCTGCAGGTACCTCTGCACA +
Preference number: 1 (lower is better)
Translates to: ANFTDKGPTPQAARC*GCQMAPVTCRYLCT
Trigger: TGTGCAGAGGTACCTGCAGGTGACCGGTGCCATCTGGCACCCTCAGCATCTGGCAGCTTGAGGTGTTGGTCCCTTGTCTGTGAAATTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp TCCTTACAAAGGTCTCCACTCCTACTCACCCCCAGGGATGAAGTTTaGTGCTTCTTAAGGCCCCACTGCCAGTCCACAGCTGGCTGCGTC +
Preference number: 1 (lower is better)
Translates to: SLQRSPLLLTPRDEV*CFLRPHCQSTAGCV
Trigger: GACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGTAGGAGTGGAGACCTTTGTAAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp TTTGTATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTaGGTGGAGGTGAAACAAGGGGAGCAGAGGGGAGCAGAGTTTCCC +
Preference number: 1 (lower is better)
Translates to: FVSASSLCFLLSCIW*VEVKQGEQRGAEFP
Trigger: GGGAAACTCTGCTCCCCTCTGCTCCCCTTGTTTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGATACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp TACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTaGCGTTCAGGCCGGCAGGACTTCCAGTTCCCACATCGGCTCCTG +
Preference number: 1 (lower is better)
Translates to: YTTKPSTRTLVLQIR*RSGRQDFQFPHRLL
Trigger: CAGGAGCCGATGTGGGAACTGGAAGTCCTGCCGGCCTGAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp TTACAAAGGTCTCCACTCCTACTCACCCCCAGGGATGAAGTTTGCTaGTTCTTAAGGCCCCACTGCCAGTCCACAGCTGGCTGCGTCCAA +
Preference number: 1 (lower is better)
Translates to: LQRSPLLLTPRDEVC*FLRPHCQSTAGCVQ
Trigger: TTGGACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGTAGGAGTGGAGACCTTTGTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp GAAGGCTCACTCCTGCTCTTTAAGCACAAGGTGATGTGGAGCTGTTaGTGTGGAAATCAGGGCACAGTGACGTCACTGACCCAGCTCTGC +
Preference number: 1 (lower is better)
Translates to: EGSLLLFKHKVMWSC*CGNQGTVTSLTQLC
Trigger: GCAGAGCTGGGTCAGTGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTTAAAGAGCAGGAGTGAGCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp AATCTCAGTTCTATGGGACCAGGAAGTTCCATCTCCAGTGACCTATaGAGACCACCAGCAGCCAGTCTAACAGGCACTCTGGAGGGGACA +
Preference number: 1 (lower is better)
Translates to: NLSSMGPGSSISSDL*RPPAASLTGTLEGT
Trigger: TGTCCCCTCCAGAGTGCCTGTTAGACTGGCTGCTGGTGGTCTCCATAGGTCACTGGAGATGGAACTTCCTGGTCCCATAGAACTGAGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp GCCTACACAGAAGGCTCACTCCTGCTCTTTAAGCACAAGGTGATGTaGAGCTGTTGCTGTGGAAATCAGGGCACAGTGACGTCACTGACC +
Preference number: 1 (lower is better)
Translates to: AYTEGSLLLFKHKVM*SCCCGNQGTVTSLT
Trigger: GGTCAGTGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTTAAAGAGCAGGAGTGAGCCTTCTGTGTAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 90 bp GTTTTGCCAATGGCCCTGGCTGGCCAGTCAGGCTTGGAGAACTTGTaGCTACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACAGAT +
Preference number: 1 (lower is better)
Translates to: VLPMALAGQSGLENL*LHNQAKHKDSCLTD
Trigger: ATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTAGGCACAAGTTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGGCAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 90 bp GTCCCCACTGGTCTACTCCAAGAAAGAACCTTATTAGGTTTTCCTTaGGACAAATCTCAGTTCTATGGGACCAGGAAGTTCCATCTCCAG +
Preference number: 1 (lower is better)
Translates to: VPTGLLQERTLLGFP*DKSQFYGTRKFHLQ
Trigger: CTGGAGATGGAACTTCCTGGTCCCATAGAACTGAGATTTGTCTCAAGGAAAACCTAATAAGGTTCTTTCTTGGAGTAGACCAGTGGGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 90 bp AGAAAGAACCTTATTAGGTTTTCCTTGAGACAAATCTCAGTTCTATaGGACCAGGAAGTTCCATCTCCAGTGACCTATGGAGACCACCAG +
Preference number: 1 (lower is better)
Translates to: RKNLIRFSLRQISVL*DQEVPSPVTYGDHQ
Trigger: CTGGTGGTCTCCATAGGTCACTGGAGATGGAACTTCCTGGTCCCATAGAACTGAGATTTGTCTCAAGGAAAACCTAATAAGGTTCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp AAAACCCAAGTGCGGGGGCTGATCAGACCTCATTGCCCACTGGCCAGGCTGGGTGGGCTGCCTGCCTCCTaGCCCTGCTGCCTTGCCTTG +
Preference number: 2 (lower is better)
Translates to: KTQVRGLIRPHCPLARLGGLPAS*PCCLAL
Trigger: CAAGGCAAGGCAGCAGGGCCAGGAGGCAGGCAGCCC...ACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp CTGATGCAGACAGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTGGGTGGAGAGCCTGGTGGAGAAAAATaGGAGGCAGCTGTCCCTGGT +
Preference number: 2 (lower is better)
Translates to: LMQTARGSLLWQWRVGGEPGGEK*EAAVPG
Trigger: ACCAGGGACAGCTGCCTCCCATTTTTCTCCACCAGG...CTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCTGCATCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 90 bp AAACTACCTTGGCAGGCAGCCTCCAGGCCATGGCTGCGTTGTGTTTaGCCCCCTGGTGGAGAAAAATGGGAGGCAGCTGTCCCTGGTCCC +
Preference number: 2 (lower is better)
Translates to: KLPWQAASRPWLRCV*PPGGEKWEAAVPGP
Trigger: GGGACCAGGGACAGCTGCCTCCCATTTTTCTCCACCAGGGGGCAAAACACAACGCAGCCATGGCCTGGAGGCTGCCTGCCAAGGTAGTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp ACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCAGGCCGGACTGGCCAGGCTGGGTaGACAGGTTGGCCCTGCAGC +
Preference number: 2 (lower is better)
Translates to: TKPSTRTLVLQIRCRSGRTGQAG*TGWPCS
Trigger: GCTGCAGGGCCAACCTGTGCACCCAGCCTGGCCAGT...CCGGCCTGAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp AAAACCCAAGTGCGGGGGCTGATCAGACCTCATTGCCCACTGGCCAGGCTGGGTAGTGGGAAATGGAAGTaGGAGTTGCCCACCCTCCCC +
Preference number: 2 (lower is better)
Translates to: KTQVRGLIRPHCPLARLGSGKWK*ELPTLP
Trigger: GGGGAGGGTGGGCAACTCCCACTTCCATTTCCCACT...ACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp TGCGTCCAAGACCAGCACACTCCCAGAGGGCTTGGCCCAACCCACAGCCTCTACTTGCTGGCTCTTCTATaGCTGCATCTTGCTGTGGGC +
Preference number: 2 (lower is better)
Translates to: CVQDQHTPRGLGPTHSLYLLALL*LHLAVG
Trigger: GCCCACAGCAAGATGCAGTCATAGAAGAGCCAGCAA...GTAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGCCTCGGTCAGCAGACTaGCAGCCACCCATCGGGCGG +
Preference number: 2 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQPRSAD*QPPIGR
Trigger: CCGCCCGATGGGTGGCTGTCAGTCTGCTGACCGAGG...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp CCTGGAGAAGTCAGCGGGAGCTCACTGTACTGCCCCTGCACCCCAGATAGGCTAAAGTTCCATCTCCAGTaGCCTATGGAGACCACCAGC +
Preference number: 2 (lower is better)
Translates to: PGEVSGSSLYCPCTPDRLKFHLQ*PMETTS
Trigger: GCTGGTGGTCTCCATAGGTCACTGGAGATGGAACTT...TAGCCTATCTGGGGTGCAGGGGCAGTACAGTGAGCTCCCGCTGACTTCTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp AAGCACAAGGTGATGTGGAGCTGTTGCTGTGGAAATCAGGGCACAGTGACGTCATGCCTTGTGTCTGGGTaGCCTGAGCCATCCTCGGGC +
Preference number: 2 (lower is better)
Translates to: KHKVMWSCCCGNQGTVTSCLVSG*PEPSSG
Trigger: GCCCGAGGATGGCTCAGGTCACCCAGACACAAGGCA...TGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp AAGCACAAGGTGATGTGGAGCTGTTGCTGTGGAAATCAGGGCACAGTGACGTCAGCCTCCTGGCCCTGCTaGCTTGCCTTGTGTCTGGGT +
Preference number: 2 (lower is better)
Translates to: KHKVMWSCCCGNQGTVTSASWPC*LALCLG
Trigger: ACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGC...TGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGGACCTCATTGCCCACTaGCCAGGCTGGGTGCACAGG +
Preference number: 2 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQDLIAH*PGWVHR
Trigger: CCTGTGCACCCAGCCTGGCCAGTGGGCAATGAGGTC...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp GGTTTGCTCCCACCCACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGATCTGGTGGGTGGAGGTaGAACAAGGGGAGCAGAGGG +
Preference number: 2 (lower is better)
Translates to: GLLPPTRSSLMSVLLVLGSGGWR*NKGSRG
Trigger: CCCTCTGCTCCCCTTGTTTCACCTCCACCCACCAGA...TCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGGTGGGAGCAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATTCTGGGACAATGGGCTaGCTGCCTCCTGGCCCTGCT +
Preference number: 2 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHSGTMG*LPPGPA
Trigger: AGCAGGGCCAGGAGGCAGGCAGCCCATTGTCCCAGA...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp AAAACCCAAGTGCGGGGGCTGATCAGACCTCATTGCCCACTGGCCAGGCTGGGTGTGCCAGGAACTAAATaGTCCCCAAAAGCAAACCTC +
Preference number: 2 (lower is better)
Translates to: KTQVRGLIRPHCPLARLGVPGTK*SPKANL
Trigger: GAGGTTTGCTTTTGGGGACCATTTAGTTCCTGGCAC...ACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCGCCCACTGGCCAGGCTaGGTGCACAGGTTGGCCCTG +
Preference number: 2 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCIAHWPG*VHRLAL
Trigger: CAGGGCCAACCTGTGCACCCAGCCTGGCCAGTGGGC...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp ATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTGAAAAGGCTAGGCCAACATaGCAGCTAACAGTGCCATGT +
Preference number: 2 (lower is better)
Translates to: ISLLSVLPPQLHLVGGGEKARPT*QLTVPC
Trigger: ACATGGCACTGTTAGCTGTCATGTTGGCCTAGCCTT...TTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGAGCTACAGCAGTGAGTaGGGCCTCGGTCAGCAGACT +
Preference number: 2 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQSYSSE*GLGQQT
Trigger: AGTCTGCTGACCGAGGCCTCACTCACTGCTGTAGCT...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp TTTGCTCACTCGGAACACTCAATGCACAGATGGCTGCAGTTAAATAAGGGAGGGCCTGCCTCCTGGCCCTaGTGCCTTGCCTTGTGTCTG +
Preference number: 2 (lower is better)
Translates to: FAHSEHSMHRWLQLNKGGPASWP*CLALCL
Trigger: CAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCAGG...CCCTCCCTTATTTAACTGCAGCCATCTGTGCATTGAGTGTTCCGAGTGAGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp AAAACCCAAGTGCGGGGGCTGATCAGACCTCATTGCCCACTGGCCAGGCTGGGTTTTTGTAGAGAAGGGTaGCAGGAACTAAATGGTCCC +
Preference number: 2 (lower is better)
Translates to: KTQVRGLIRPHCPLARLGFCREG*QELNGP
Trigger: GGGACCATTTAGTTCCTGGCACCCTTCTCTACAAAA...ACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGTTCTTAAGGCCCCACTaGCAGTCCACAGCTGGCTGC +
Preference number: 2 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQFLRPH*QSTAGC
Trigger: GCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAA...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp ATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTGAATCACTTTTTCAGCTCTaGGCACAGGTCAGCTACAGC +
Preference number: 2 (lower is better)
Translates to: ISLLSVLPPQLHLVGGGESLFQL*AQVSYS
Trigger: GCTGTAGCTGACCTGTGCGCAGAGCTGAAAAAGTGA...TTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp GCCTTTCACTTTTTCAGCTCTGCGCACAGGTCAGCTACAGCAGTGAGTGAGGCCTTCCTGGTCTCTAACTaGCAAGCCCAGCTCACTTCC +
Preference number: 2 (lower is better)
Translates to: AFHFFSSAHRSATAVSEAFLVSN*QAQLTS
Trigger: GGAAGTGAGCTGGGCTTGCCAGTTAGAGACCAGGAA...GGCCTCACTCACTGCTGTAGCTGACCTGTGCGCAGAGCTGAAAAAGTGAAAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCACTCCCAGAGGGCTTaGCCCAACCCACAGCCTCTA +
Preference number: 2 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHHSQRA*PNPQPL
Trigger: TAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTG...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp GCCTTTCACTTTTTCAGCTCTGCGCACAGGTCAGCTACAGCAGTGAGTGAGGCCACTCACCCCCAGGGATaGAGTTTGCTGCTTCTTAAG +
Preference number: 2 (lower is better)
Translates to: AFHFFSSAHRSATAVSEATHPQG*SLLLLK
Trigger: CTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGT...GGCCTCACTCACTGCTGTAGCTGACCTGTGCGCAGAGCTGAAAAAGTGAAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCTCTCCTCTGGGACAATaGGCTGCCTGCCTCCTGGCC +
Preference number: 2 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCISPLGQ*AACLLA
Trigger: GGCCAGGAGGCAGGCAGCCCATTGTCCCAGAGGAGA...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp TTGGTTCTGAATGCTGAGGTCAGAGGTCCTTACAAAGGTCTCCACTCCTACTCAGAGGGGACAGAGCAGTaGCACATGGACACTCCTGGC +
Preference number: 2 (lower is better)
Translates to: LVLNAEVRGPYKGLHSYSEGTEQ*HMDTPG
Trigger: GCCAGGAGTGTCCATGTGCCACTGCTCTGTCCCCTC...TGAGTAGGAGTGGAGACCTTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGCTCAGCTGCATCTGGTaGGTGGAGGTGAAACAAGGG +
Preference number: 2 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQLSCIW*VEVKQG
Trigger: CCCTTGTTTCACCTCCACCCACCAGATGCAGCTGAG...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATGGCCTACAGGGACTGTaGTCTTGGTGGCTTCAAGCC +
Preference number: 2 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHGLQGL*SWWLQA
Trigger: GGCTTGAAGCCACCAAGACCACAGTCCCTGTAGGCC...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 90 bp TTGCTCCCACCCACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTaGGGAAGCCTGGTTTGTATCAGCCTCCTCTCTGTGCTTCCTCCT +
Preference number: 2 (lower is better)
Translates to: LLPPTRSSLMSVLLV*GSLVCISLLSVLPP
Trigger: AGGAGGAAGCACAGAGAGGAGGCTGATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGGTGGGAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCTGTGTCTGGGTGACCTaGGCCATCCTCGGGCTGCTT +
Preference number: 2 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCICVWVT*AILGLL
Trigger: AAGCAGCCCGAGGATGGCTCAGGTCACCCAGACACA...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp AAGCACAAGGTGATGTGGAGCTGTTGCTGTGGAAATCAGGGCACAGTGACGTCAGGAACAAGGAGCCCATaGGACAAGGACTCAGTTAGG +
Preference number: 2 (lower is better)
Translates to: KHKVMWSCCCGNQGTVTSGTRSP*DKDSVR
Trigger: CCTAACTGAGTCCTTGTCCCATGGGCTCCTTGTTCC...TGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp GTAGACAAAGCTGGGCCCTCCCTCTTCCTGGTCTCTAACTGGCAAGCCCAGCTCAAGTTACATGGAGCCTaGATACTCCTAAAACCCTGT +
Preference number: 2 (lower is better)
Translates to: VDKAGPSLFLVSNWQAQLKLHGA*ILLKPC
Trigger: ACAGGGTTTTAGGAGTATCCAGGCTCCATGTAACTT...GAGCTGGGCTTGCCAGTTAGAGACCAGGAAGAGGGAGGGCCCAGCTTTGTCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp CTACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCACTGAGAAACTACCTTaGCAGGCAGCCTCCAGGCCA +
Preference number: 2 (lower is better)
Translates to: LHNQAKHKDSCLTDQVPFTEKLP*QAASRP
Trigger: TGGCCTGGAGGCTGCCTGCCAAGGTAGTTTCTCAGT...GAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCGCCAATGGCCCTGGCTaGCCAGTCAGGCTTGGAGAA +
Preference number: 2 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCIANGPG*PVRLGE
Trigger: TTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGGC...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 90 bp TTTGTTTTGCCAATGGCCCTGGCTGGCCAGTCAGGCTTGGAGAACTaGTGCCTACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACA +
Preference number: 2 (lower is better)
Translates to: FVLPMALAGQSGLEN*CLHNQAKHKDSCLT
Trigger: TGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTAGGCACAAGTTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGGCAAAACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 90 bp TCAGTAGTTTTTGTTTTGCCAATGGCCCTGGCTGGCCAGTCAGGCTaGGAGAACTTGTGCCTACACAACCAAGCCAAGCACAAGGACTCT +
Preference number: 2 (lower is better)
Translates to: SVVFVLPMALAGQSG*ENLCLHNQAKHKDS
Trigger: AGAGTCCTTGTGCTTGGCTTGGTTGTGTAGGCACAAGTTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGGCAAAACAAAAACTACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 90 bp ACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTaGTATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGT +
Preference number: 2 (lower is better)
Translates to: TQLTDVCFASFGKPG*YQPPLCASSSAASG
Trigger: ACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp TTGGTTCTGAATGCTGAGGTCAGAGGTCCTTACAAAGGTCTCCACTCCTACTCATTAGTGGGTGGTGTCTaGGGCTTTAAGGGGTGGCAG +
Preference number: 2 (lower is better)
Translates to: LVLNAEVRGPYKGLHSYSLVGGV*GFKGWQ
Trigger: CTGCCACCCCTTAAAGCCTCAGACACCACCCACTAA...TGAGTAGGAGTGGAGACCTTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp TCAGGCTTCACCCTCATTTACTGGGGCAGCTTCAAGACAGGCTTTGCCTTTAATGGAGGCAGCTGTCCCTaGTCCCATCAGAGTATTAGG +
Preference number: 2 (lower is better)
Translates to: SGFTLIYWGSFKTGFAFNGGSCP*SHQSIR
Trigger: CCTAATACTCTGATGGGACCAGGGACAGCTGCCTCC...ATTAAAGGCAAAGCCTGTCTTGAAGCTGCCCCAGTAAATGAGGGTGAAGCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR GCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATGTGATGTGGAGCTGTTaGTGTGGAAATCAGGGCACA +
Preference number: 2 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHVMWSC*CGNQGT
Trigger: TGTGCCCTGATTTCCACAGCAACAGCTCCACATCAC...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR TCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGAACACAGCCAAGTTCTaGCAAGGAAGCAGATCTACA +
Preference number: 2 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQNTAKF*QGSRST
Trigger: TGTAGATCTGCTTCCTTGTCAGAACTTGGCTGTGTT...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp ATACTCCTAAAACCCTGTCTAAGCCCAAAGTCCCTCATTCTCACCCACTGCCAGACACACAGGCTAAAGTaGGAAATGGAAGTGGGAGTT +
Preference number: 2 (lower is better)
Translates to: ILLKPCLSPKSLILTHCQTHRLK*EMEVGV
Trigger: AACTCCCACTTCCATTTCCCACTTTAGCCTGTGTGT...CTGGCAGTGGGTGAGAATGAGGGACTTTGGGCTTAGACAGGGTTTTAGGAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 90 bp GGTCCCCACTGGTCTACTCCAAGAAAGAACCTTATTAGGTTTTCCTaGAGACAAATCTCAGTTCTATGGGACCAGGAAGTTCCATCTCCA +
Preference number: 2 (lower is better)
Translates to: GPHWSTPRKNLIRFS*RQISVLWDQEVPSP
Trigger: TGGAGATGGAACTTCCTGGTCCCATAGAACTGAGATTTGTCTCAAGGAAAACCTAATAAGGTTCTTTCTTGGAGTAGACCAGTGGGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CCA 90 bp TTGGTTCTGAATGCTGAGGTCAGAGGTCCTTACAAAGGTCTCCACTCCTACTCACACTCAATGCACAGATaGCTGCAGTTAAATAAGGGA +
Preference number: 2 (lower is better)
Translates to: LVLNAEVRGPYKGLHSYSHSMHR*LQLNKG
Trigger: TCCCTTATTTAACTGCAGCCATCTGTGCATTGAGTG...TGAGTAGGAGTGGAGACCTTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp CTCTGGGACAATGGGCTGCCTGCCTCCTGGCCCTGCTaGCTTGCCTTGTGTCTGGGTGACCTGAGCCATCCT +
Preference number: 3 (lower is better)
Translates to: LWDNGLPASWPC*LALCLGDLSHP
Trigger: AGGATGGCTCAGGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCAGGCAGCCCATTGTCCCAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp AGACAGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTaGGTGGAGAGCACAGAACACAGGACGGACACCTGC +
Preference number: 3 (lower is better)
Translates to: RQPGAVCSGNGA*VESTEHRTDTC
Trigger: GCAGGTGTCCGTCCTGTGTTCTGTGCTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp CAGGCCGGCAGGACTTCCAGTTCCCACATCGGCTCCTaGAGAAGTCAGCGGGAGCTCACTGTACTGCCCCTG +
Preference number: 3 (lower is better)
Translates to: QAGRTSSSHIGS*RSQRELTVLPL
Trigger: CAGGGGCAGTACAGTGAGCTCCCGCTGACTTCTCCAGGAGCCGATGTGGGAACTGGAAGTCCTGCCGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp CCTGGCCCTGCTGCCTTGCCTTGTGTCTGGGTGACCTaGGCCATCCTCGGGCTGCTTCTCATTAGTGGCTGG +
Preference number: 3 (lower is better)
Translates to: PGPAALPCVWVT*AILGLLLISGW
Trigger: CCAGCCACTAATGAGAAGCAGCCCGAGGATGGCTCAGGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp TGCTTCTTAAGGCCCCACTGCCAGTCCACAGCTGGCTaGGTCCAAGACCAGCACACTCCCAGAGGGCTTGGC +
Preference number: 3 (lower is better)
Translates to: CFLRPHCQSTAG*VQDQHTPRGLG
Trigger: GCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp AGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTGGGTaGAGAGCACAGAACACAGGACGGACACCTGCCAAA +
Preference number: 3 (lower is better)
Translates to: SQGQSALAMARG*RAQNTGRTPAK
Trigger: TTTGGCAGGTGTCCGTCCTGTGTTCTGTGCTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp TGCCTCCTGGCCCTGCTGCCTTGCCTTGTGTCTGGGTaGCCTGAGCCATCCTCGGGCTGCTTCTCATTAGTG +
Preference number: 3 (lower is better)
Translates to: CLLALLPCLVSG*PEPSSGCFSLV
Trigger: CACTAATGAGAAGCAGCCCGAGGATGGCTCAGGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp ACATATCTCCTCTGGGACAATGGGCTGCCTGCCTCCTaGCCCTGCTGCCTTGCCTTGTGTCTGGGTGACCTG +
Preference number: 3 (lower is better)
Translates to: TYLLWDNGLPAS*PCCLALCLGDL
Trigger: CAGGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp TTGCTGCTTCTTAAGGCCCCACTGCCAGTCCACAGCTaGCTGCGTCCAAGACCAGCACACTCCCAGAGGGCT +
Preference number: 3 (lower is better)
Translates to: LLLLKAPLPVHS*LRPRPAHSQRA
Trigger: AGCCCTCTGGGAGTGTGCTGGTCTTGGACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp GCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTaGGTGGAGGTGAAACAAGGGGAGCAGAGGGGAGCA +
Preference number: 3 (lower is better)
Translates to: ASSLCFLLSCIW*VEVKQGEQRGA
Trigger: TGCTCCCCTCTGCTCCCCTTGTTTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp ACAGACAAGGGACCAACACCTCAAGCTGCCAGATGCTaGGGGTGCCAGATGGCACCGGTCACCTGCAGGTAC +
Preference number: 3 (lower is better)
Translates to: TDKGPTPQAARC*GCQMAPVTCRY
Trigger: GTACCTGCAGGTGACCGGTGCCATCTGGCACCCTCAGCATCTGGCAGCTTGAGGTGTTGGTCCCTTGTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp ATGGACACTCCTGGCCCCGGGAAAGGTACAGGCACATaGGGGCCACCTGTAGCCGCCGTCTTGTGTCTTAGT +
Preference number: 3 (lower is better)
Translates to: MDTPGPGKGTGT*GPPVAAVLCLS
Trigger: ACTAAGACACAAGACGGCGGCTACAGGTGGCCCTCATGTGCCTGTACCTTTCCCGGGGCCAGGAGTGTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp TTTCAGCTCTGCGCACAGGTCAGCTACAGCAGTGAGTaGGGCCTCGGTCAGCAGACTGACAGCCACCCATCG +
Preference number: 3 (lower is better)
Translates to: FQLCAQVSYSSE*GLGQQTDSHPS
Trigger: CGATGGGTGGCTGTCAGTCTGCTGACCGAGGCCTCACTCACTGCTGTAGCTGACCTGTGCGCAGAGCTGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp CCCAGGGATGAAGTTTGCTGCTTCTTAAGGCCCCACTaGCAGTCCACAGCTGGCTGCGTCCAAGACCAGCAC +
Preference number: 3 (lower is better)
Translates to: PRDEVCCFLRPH*QSTAGCVQDQH
Trigger: GTGCTGGTCTTGGACGCAGCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp CTTTCTCTGATGCAGACAGCCAGGGGCAGTCTGCTCTaGCAATGGCGCGTGGGTGGAGAGCACAGAACACAG +
Preference number: 3 (lower is better)
Translates to: LSLMQTARGSLL*QWRVGGEHRTQ
Trigger: CTGTGTTCTGTGCTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCTGCATCAGAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp GCCTTTCACTTTTTCAGCTCTGCGCACAGGTCAGCTACAGCAGTGAGTGAGGCCGCTGATCAGACCTCATaGCCCACTGGCCAGGCTGGG +
Preference number: 3 (lower is better)
Translates to: AFHFFSSAHRSATAVSEAADQTS*PTGQAG
Trigger: CCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGC...GGCCTCACTCACTGCTGTAGCTGACCTGTGCGCAGAGCTGAAAAAGTGAAAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp GCCTTTCACTTTTTCAGCTCTGCGCACAGGTCAGCTACAGCAGTGAGTGAGGCCACACTCCCAGAGGGCTaGGCCCAACCCACAGCCTCT +
Preference number: 3 (lower is better)
Translates to: AFHFFSSAHRSATAVSEATLPEG*AQPTAS
Trigger: AGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGT...GGCCTCACTCACTGCTGTAGCTGACCTGTGCGCAGAGCTGAAAAAGTGAAAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGCCTGGCCCTGCTGCCTaGCCTTGTGTCTGGGTGACC +
Preference number: 3 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQPGPAA*PCVWVT
Trigger: GGTCACCCAGACACAAGGCAAGGCAGCAGGGCCAGG...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp GGGGTGGCAGCAATCACAGGGAACACAGCCAAGTTCTaGCAAGGAAGCAGATCTACAGAGGGCTCCAGGCGG +
Preference number: 3 (lower is better)
Translates to: GVAAITGNTAKF*QGSRSTEGSRR
Trigger: CCGCCTGGAGCCCTCTGTAGATCTGCTTCCTTGTCAGAACTTGGCTGTGTTCCCTGTGATTGCTGCCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp GGGTGCCAGATGGCACCGGTCACCTGCAGGTACCTCTaGACACCCAGTTACAGGGCTGTACTGGAATTTGTC +
Preference number: 3 (lower is better)
Translates to: GCQMAPVTCRYL*TPSYRAVLEFV
Trigger: GACAAATTCCAGTACAGCCCTGTAACTGGGTGTGCAGAGGTACCTGCAGGTGACCGGTGCCATCTGGCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp TCTCCACTCCTACTCACCCCCAGGGATGAAGTTTGCTaGTTCTTAAGGCCCCACTGCCAGTCCACAGCTGGC +
Preference number: 3 (lower is better)
Translates to: SPLLLTPRDEVC*FLRPHCQSTAG
Trigger: GCCAGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGTAGGAGTGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp TCATTAGTGGCTGGACCACTCTGTGATGACGCTGCCTaGTACCTCTTCCCAGAGTTCATCCTCCTGGGGCGG +
Preference number: 3 (lower is better)
Translates to: SLVAGPLCDDAA*YLFPEFILLGR
Trigger: CCGCCCCAGGAGGATGAACTCTGGGAAGAGGTACCAGGCAGCGTCATCACAGAGTGGTCCAGCCACTAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp TGGCTGCGTCCAAGACCAGCACACTCCCAGAGGGCTTaGCCCAACCCACAGCCTCTACTCTTCTTCCTCTTT +
Preference number: 3 (lower is better)
Translates to: WLRPRPAHSQRA*PNPQPLLFFLF
Trigger: AAAGAGGAAGAAGAGTAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGCAGGCCATGGCTGCGTaGTGTTTTGCCCCCTGGTGG +
Preference number: 3 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQQAMAA*CFAPWW
Trigger: CCACCAGGGGGCAAAACACAACGCAGCCATGGCCTG...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp AGGTCTCCACTCCTACTCACCCCCAGGGATGAAGTTTaGTGCTTCTTAAGGCCCCACTGCCAGTCCACAGCT +
Preference number: 3 (lower is better)
Translates to: RSPLLLTPRDEV*CFLRPHCQSTA
Trigger: AGCTGTGGACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGTAGGAGTGGAGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp AGCAGCCAGTCTAACAGGCACTCTGGAGGGGACACTTaGGCAGCAGGCCTAAGTTACATGGAGCCTGGATAC +
Preference number: 3 (lower is better)
Translates to: SSQSNRHSGGDT*AAGLSYMEPGY
Trigger: GTATCCAGGCTCCATGTAACTTAGGCCTGCTGCCCAAGTGTCCCCTCCAGAGTGCCTGTTAGACTGGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp GCAGCATCTTCAAGGAGGATGGCTCCAGTCTGTTCCTaGCTTTTGAGGTCCCTGCTGGCTTCCTGTGCACTC +
Preference number: 3 (lower is better)
Translates to: AASSRRMAPVCS*LLRSLLASCAL
Trigger: GAGTGCACAGGAAGCCAGCAGGGACCTCAAAAGCCAGGAACAGACTGGAGCCATCCTCCTTGAAGATGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp TTTTGGGAAGCCTGGTTTGTATCAGCCTCCTCTCTGTaGTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTG +
Preference number: 3 (lower is better)
Translates to: FWEAWFVSASSL*FLLSCIWWVEV
Trigger: CACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGATACAAACCAGGCTTCCCAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp CTCTTTGCAGGACTGTCTGCTGCCCTGGCCTTGAGGTaGACGTTATCTGTGGGCACTAGAAACACACAGGCT +
Preference number: 3 (lower is better)
Translates to: LFAGLSAALALR*TLSVGTRNTQA
Trigger: AGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp GAGTTCTCTTTGCAGGACTGTCTGCTGCCCTGGCCTTaGGGTGGACGTTATCTGTGGGCACTAGAAACACAC +
Preference number: 3 (lower is better)
Translates to: EFSLQDCLLPWP*GGRYLWALETH
Trigger: GTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp CCCAGTTACAGGGCTGTACTGGAATTTGTCCTTCCCTaGGACATATCTCCTCTGGGACAATGGGCTGCCTGC +
Preference number: 3 (lower is better)
Translates to: PSYRAVLEFVLP*DISPLGQWAAC
Trigger: GCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAATTCCAGTACAGCCCTGTAACTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp CTTACAAAGGTCTCCACTCCTACTCACCCCCAGGGATaGAGTTTGCTGCTTCTTAAGGCCCCACTGCCAGTC +
Preference number: 3 (lower is better)
Translates to: LTKVSTPTHPQG*SLLLLKAPLPV
Trigger: GACTGGCAGTGGGGCCTTAAGAAGCAGCAAACTTCATCCCTGGGGGTGAGTAGGAGTGGAGACCTTTGTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp ACCCAGCTCTGCACATACCTGGGCCTCCTTTGGTTCTaGATGCTGAGGTCAGAGGTCCTTACAAAGGTCTCC +
Preference number: 3 (lower is better)
Translates to: TQLCTYLGLLWF*MLRSEVLTKVS
Trigger: GGAGACCTTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAAAGGAGGCCCAGGTATGTGCAGAGCTGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp AGACTCTGTAAGAGTTCTCTTTGCAGGACTGTCTGCTaGCCTGGCCTTGAGGTGGACGTTATCTGTGGGCAC +
Preference number: 3 (lower is better)
Translates to: RLCKSSLCRTVC*PGLEVDVICGH
Trigger: GTGCCCACAGATAACGTCCACCTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCTTACAGAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp TTGTTTTGCCAATGGCCCTGGCTGGCCAGTCAGGCTTaGAGAACTTGTGCCTACACAACCAAGCCAAGCACA +
Preference number: 3 (lower is better)
Translates to: LFCQWPWLASQA*RTCAYTTKPST
Trigger: TGTGCTTGGCTTGGTTGTGTAGGCACAAGTTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGGCAAAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp CTACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCCTCTGGAGGGGACACTaGGGCAGCAGGCCTAAGTTA +
Preference number: 3 (lower is better)
Translates to: LHNQAKHKDSCLTDQVPFLWRGH*GSRPKL
Trigger: TAACTTAGGCCTGCTGCCCAAGTGTCCCCTCCAGAG...GAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp AGTAGACTCTGTAAGAGTTCTCTTTGCAGGACTGTCTaGTGCCCTGGCCTTGAGGTGGACGTTATCTGTGGG +
Preference number: 3 (lower is better)
Translates to: SRLCKSSLCRTV*CPGLEVDVICG
Trigger: CCCACAGATAACGTCCACCTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCTTACAGAGTCTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp AGGACTCAGTTAGGGACCCTGATGGCCATAGGTTCTTaGTGGCTCTTCTATGACTGCATCTTGCTGTGGGCT +
Preference number: 3 (lower is better)
Translates to: RTQLGTLMAIGS*WLFYDCILLWA
Trigger: AGCCCACAGCAAGATGCAGTCATAGAAGAGCCAGCAAGAACCTATGGCCATCAGGGTCCCTAACTGAGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp CCCTGTCTAAGCCCAAAGTCCCTCATTCTCACCCACTaGCAGGAGCTAATTTCACAGACAAGGGACCAACAC +
Preference number: 3 (lower is better)
Translates to: PCLSPKSLILTH*QELISQTRDQH
Trigger: GTGTTGGTCCCTTGTCTGTGAAATTAGCTCCTGGCAGTGGGTGAGAATGAGGGACTTTGGGCTTAGACAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp CTCCTGCTCTTTAAGCACAAGGTGATGTGGAGCTGTTaGTGTGGAAATCAGGGCACAGTGACGTCACTGACC +
Preference number: 3 (lower is better)
Translates to: LLLFKHKVMWSC*CGNQGTVTSLT
Trigger: GGTCAGTGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTTAAAGAGCAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp GGACACTTGGGCAGCAGGCCTAAGTTACATGGAGCCTaGATACTCCTAAAACCCTGTCTAAGCCCAAAGTCC +
Preference number: 3 (lower is better)
Translates to: GHLGSRPKLHGA*ILLKPCLSPKS
Trigger: GGACTTTGGGCTTAGACAGGGTTTTAGGAGTATCCAGGCTCCATGTAACTTAGGCCTGCTGCCCAAGTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCGTCTGTTCCTGGCTTTaGAGGTCCCTGCTGGCTTCC +
Preference number: 3 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCIVCSWL*RSLLAS
Trigger: GGAAGCCAGCAGGGACCTCAAAAGCCAGGAACAGAC...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp TCTGCACATACCTGGGCCTCCTTTGGTTCTGAATGCTaGGGTCAGAGGTCCTTACAAAGGTCTCCACTCCTA +
Preference number: 3 (lower is better)
Translates to: SAHTWASFGSEC*GQRSLQRSPLL
Trigger: TAGGAGTGGAGACCTTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAAAGGAGGCCCAGGTATGTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp GGGTCATTCAGGCACAGTCGCTCCTTGAAACTGAAATaGGTGGACCTACAAAAAGCTCCCATGTGCTGTGGG +
Preference number: 3 (lower is better)
Translates to: GSFRHSRSLKLK*VDLQKAPMCCG
Trigger: CCCACAGCACATGGGAGCTTTTTGTAGGTCCACTCATTTCAGTTTCAAGGAGCGACTGTGCCTGAATGACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATTTTGGGAAGCCTGGTTaGTATCAGCCTCCTCTCTGT +
Preference number: 3 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHFGKPG*YQPPLC
Trigger: ACAGAGAGGAGGCTGATACAAACCAGGCTTCCCAAA...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR GCA 72 bp TTAAGAGCAAGTAGTAGACTCTGTAAGAGTTCTCTTTaGAGGACTGTCTGCTGCCCTGGCCTTGAGGTGGAC +
Preference number: 3 (lower is better)
Translates to: LRASSRLCKSSL*RTVCCPGLEVD
Trigger: GTCCACCTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCTTACAGAGTCTACTACTTGCTCTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp TACTGCATTAAGACTGCACCTTTGGGGTTGGAGGTGTaGCTCAGTGGTAGAGTAACAAAAGAAGGACCTGGG +
Preference number: 3 (lower is better)
Translates to: YCIKTAPLGLEV*LSGRVTKEGPG
Trigger: CCCAGGTCCTTCTTTTGTTACTCTACCACTGAGCCACACCTCCAACCCCAAAGGTGCAGTCTTAATGCAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCATACCTGGGCCTCCTTaGGTTCTGAATGCTGAGGTC +
Preference number: 3 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCIIPGPP*VLNAEV
Trigger: GACCTCAGCATTCAGAACCAAAGGAGGCCCAGGTAT...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR-3UTR CAA 90 bp TCAGGCTTCACCCTCATTTACTGGGGCAGCTTCAAGACAGGCTTTGCCTTTAATGGGCTGTACTGGAATTaGTCCTTCCCTGAGACATAT +
Preference number: 3 (lower is better)
Translates to: SGFTLIYWGSFKTGFAFNGLYWN*SFPETY
Trigger: ATATGTCTCAGGGAAGGACAAATTCCAGTACAGCCC...ATTAAAGGCAAAGCCTGTCTTGAAGCTGCCCCAGTAAATGAGGGTGAAGCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp CTGTTCTGCTCCAATCTTCCCTCTTTTTCTAATGATTaGTCTCTTCACAGAGAGGGCTCTGTCTCTGTGAGA +
Preference number: 3 (lower is better)
Translates to: LFCSNLPSFSND*SLHREGSVSVR
Trigger: TCTCACAGAGACAGAGCCCTCTCTGTGAAGAGACCAATCATTAGAAAAAGAGGGAAGATTGGAGCAGAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CCA 72 bp CTTATTAGGTTTTCCTTGAGACAAATCTCAGTTCTATaGGACCAGGAAGTTCCATCTCCAGTGACCTATGGA +
Preference number: 3 (lower is better)
Translates to: LIRFSLRQISVL*DQEVPSPVTYG
Trigger: TCCATAGGTCACTGGAGATGGAACTTCCTGGTCCCATAGAACTGAGATTTGTCTCAAGGAAAACCTAATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp GGTCTACTCCAAGAAAGAACCTTATTAGGTTTTCCTTaGGACAAATCTCAGTTCTATGGGACCAGGAAGTTC +
Preference number: 3 (lower is better)
Translates to: GLLQERTLLGFP*DKSQFYGTRKF
Trigger: GAACTTCCTGGTCCCATAGAACTGAGATTTGTCTCAAGGAAAACCTAATAAGGTTCTTTCTTGGAGTAGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR TCA 72 bp CAGGATATACTGGAATTTTTATTTAGATCTCAAAGTTaGGAGTGCTTTCCCGGGAAGGTATTTATAGGTTTA +
Preference number: 3 (lower is better)
Translates to: QDILEFLFRSQS*ECFPGKVFIGL
Trigger: TAAACCTATAAATACCTTCCCGGGAAAGCACTCTCAACTTTGAGATCTAAATAAAAATTCCAGTATATCCTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp CTGATGCAGACAGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTGGGTGGAGAGGGTGGTGACAAGGGCTaGAGTTCTGGGGGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: LMQTARGSLLWQWRVGGEGGDKG*SSGGEG
Trigger: GCCCTCTCCCCCAGAACTGCAGCCCTTGTCACCACC...CTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCTGCATCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp AAAACCCAAGTGCGGGGGCTGATCAGACCTCATTGCCCACTGGCCAGGCTGGGTGGCTGCCAGAACGCCTaGGGTCTGCCCTCTTCGCTC +
Preference number: 4 (lower is better)
Translates to: KTQVRGLIRPHCPLARLGGCQNA*GLPSSL
Trigger: GAGCGAAGAGGGCAGACCTCAGGCGTTCTGGCAGCC...ACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp CCTGGAGAAGTCAGCGGGAGCTCACTGTACTGCCCCTGCACCCCAGATAGGCTACACACGGGGCCACCTTaGGCAGGTCCTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: PGEVSGSSLYCPCTPDRLHTGPP*AGPLGT
Trigger: AGTCCCCAGAGGACCTGCCCAAGGTGGCCCCGTGTG...TAGCCTATCTGGGGTGCAGGGGCAGTACAGTGAGCTCCCGCTGACTTCTCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TGCGTCCAAGACCAGCACACTCCCAGAGGGCTTGGCCCAACCCACAGCCTCTACGCACAGCCTCCAGACTaGATGAGGACGGGCAGTCCC +
Preference number: 4 (lower is better)
Translates to: CVQDQHTPRGLGPTHSLYAQPPD*MRTGSP
Trigger: GGGACTGCCCGTCCTCATCCAGTCTGGAGGCTGTGC...GTAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp GAGGCAGTGGGGGAGAAAACCGGGAGGAACAAGGAGCCCATGGGACAAGGACTCCCCCTGAAGGCTGCCTaGAGCACAGTCGCTGCCTCA +
Preference number: 4 (lower is better)
Translates to: EAVGEKTGRNKEPMGQGLPLKAA*STVAAS
Trigger: TGAGGCAGCGACTGTGCTCCAGGCAGCCTTCAGGGG...GAGTCCTTGTCCCATGGGCTCCTTGTTCCTCCCGGTTTTCTCCCCCACTGCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TGCGTCCAAGACCAGCACACTCCCAGAGGGCTTGGCCCAACCCACAGCCTCTACGCAATGAACCTGGCCTaGGCCAGGTATCCACGGAGG +
Preference number: 4 (lower is better)
Translates to: CVQDQHTPRGLGPTHSLYAMNLA*ARYPRR
Trigger: CCTCCGTGGATACCTGGCCCAGGCCAGGTTCATTGC...GTAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TGCGTCCAAGACCAGCACACTCCCAGAGGGCTTGGCCCAACCCACAGCCTCTACCAAGGGCTGCAGTTCTaGGGGAGAGGGCTCAGCCAA +
Preference number: 4 (lower is better)
Translates to: CVQDQHTPRGLGPTHSLYQGLQF*GRGLSQ
Trigger: TTGGCTGAGCCCTCTCCCCCAGAACTGCAGCCCTTG...GTAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp CCTGGAGAAGTCAGCGGGAGCTCACTGTACTGCCCCTGCACCCCAGATAGGCTATCCAGCAGCTGCTCCTaGAGTGCACCCAGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PGEVSGSSLYCPCTPDRLSSSCS*SAPSSS
Trigger: AGAGGAGCTGGGTGCACTGCAGGAGCAGCTGCTGGA...TAGCCTATCTGGGGTGCAGGGGCAGTACAGTGAGCTCCCGCTGACTTCTCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp TGCGTCCAAGACCAGCACACTCCCAGAGGGCTTGGCCCAACCCACAGCCTCTACTCTTTCTCCAGCAGCTaGTCCTGCAGTGCACCCAGC +
Preference number: 4 (lower is better)
Translates to: CVQDQHTPRGLGPTHSLYSFSSS*SCSAPS
Trigger: GCTGGGTGCACTGCAGGAGCAGCTGCTGGAGAAAGA...GTAGAGGCTGTGGGTTGGGCCAAGCCCTCTGGGAGTGTGCTGGTCTTGGACGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp CCTGGAGAAGTCAGCGGGAGCTCACTGTACTGCCCCTGCACCCCAGATAGGCTAGGGGGCAGGTTCAGATaGAGAGGTCTCCCTCAGCTC +
Preference number: 4 (lower is better)
Translates to: PGEVSGSSLYCPCTPDRLGGRFR*RGLPQL
Trigger: GAGCTGAGGGAGACCTCTGCATCTGAACCTGCCCCC...TAGCCTATCTGGGGTGCAGGGGCAGTACAGTGAGCTCCCGCTGACTTCTCCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TGGCAGGCAGCCTCCAGGCCATGGCTGCGTTGTGTTTaGCCCCCTGGTGGAGAAAAATGGGAGGCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: WQAASRPWLRCV*PPGGEKWEAAV
Trigger: GACAGCTGCCTCCCATTTTTCTCCACCAGGGGGCAAAACACAACGCAGCCATGGCCTGGAGGCTGCCTGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TTAGAAAACCCAAGTGCGGGGGCTGATCAGACCTCATaGCCCACTGGCCAGGCTGGGTGCACAGGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: LENPSAGADQTS*PTGQAGCTGWP
Trigger: GGGCCAACCTGTGCACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTTCTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp ATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTGAACCTCTCTTCAGAGCATaGGGCAGGGGGTTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: ISLLSVLPPQLHLVGGGEPLFRA*GRGLGA
Trigger: AGCTCCCAACCCCCTGCCCCATGCTCTGAAGAGAGG...TTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp AAAACCCAAGTGCGGGGGCTGATCAGACCTCATTGCCCACTGGCCAGGCTGGGTGTGAATTGCTCAGCATaGGGTCCAGGTCCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: KTQVRGLIRPHCPLARLGVNCSA*GPGPPS
Trigger: TGAAGGAGGACCTGGACCGCATGCTGAGCAATTCAC...ACCCAGCCTGGCCAGTGGGCAATGAGGTCTGATCAGCCCCCGCACTTGGGTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp ATTTGTCCTTCCCTGAGACATATCTCCTCTGGGACAATGGGCTGCCTGCCTCCTTCCTCCCTCAAAGCCTaGTCCTGCTCCTGCCTCCCC +
Preference number: 4 (lower is better)
Translates to: ICPSLRHISSGTMGCLPPSSLKA*SCSCLP
Trigger: GGGGAGGCAGGAGCAGGAGCAGGCTTTGAGGGAGGA...AGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp GAGGCAGTGGGGGAGAAAACCGGGAGGAACAAGGAGCCCATGGGACAAGGACTCCAGCCACAGCTTCTGTaGGGTCAAGGACATTCTGCT +
Preference number: 4 (lower is better)
Translates to: EAVGEKTGRNKEPMGQGLQPQLL*GQGHSA
Trigger: AGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTG...GAGTCCTTGTCCCATGGGCTCCTTGTTCCTCCCGGTTTTCTCCCCCACTGCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp ACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCAGGCCGGGCAGGCTGGGAGACCTaGAGTCTGGGACTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: TKPSTRTLVLQIRCRSGRAGWET*SLGLCC
Trigger: GCAGCAAAGTCCCAGACTCCAGGTCTCCCAGCCTGC...CCGGCCTGAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp AGTAGACTCTGTAAGAGTTCTCTTTGCAGGACTGTCTGCTGCCCTGGCCTTGAGGAAGGCCCGGCAGGCTaGGAGACCTGGAGTCTGGGA +
Preference number: 4 (lower is better)
Translates to: SRLCKSSLCRTVCCPGLEEGPAG*ETWSLG
Trigger: TCCCAGACTCCAGGTCTCCCAGCCTGCCGGGCCTTC...CTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCTTACAGAGTCTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TGGTTACCCATCAGGCGGCCTACAGGGACTGTGGTCTaGGTGGCTTCAAGCCCCTCTGAATGTGGCATGACC +
Preference number: 4 (lower is better)
Translates to: WLPIRRPTGTVV*VASSPSECGMT
Trigger: GGTCATGCCACATTCAGAGGGGCTTGAAGCCACCAAGACCACAGTCCCTGTAGGCCGCCTGATGGGTAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp GGTTTGCTCCCACCCACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAGAGCTAGGTGTCCCCTaGAGGCTGCCTGGAGCACAG +
Preference number: 4 (lower is better)
Translates to: GLLPPTRSSLMSVLLVLGELGVP*RLPGAQ
Trigger: CTGTGCTCCAGGCAGCCTTCAGGGGACACCTAGCTC...TCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGGTGGGAGCAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp GGTTTGCTCCCACCCACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAGACAGCAGCTGGCAATaGACCTGGCCTGGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: GLLPPTRSSLMSVLLVLGDSSWQ*TWPGPG
Trigger: ACCTGGCCCAGGCCAGGTTCATTGCCAGCTGCTGTC...TCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGGTGGGAGCAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGGTGTCCCCTGAAGGCTaGCTGGAGCACAGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQVSPEG*LEHSRC
Trigger: GCAGCGACTGTGCTCCAGGCAGCCTTCAGGGGACAC...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp GTAGACAAAGCTGGGCCCTCCCTCTTCCTGGTCTCTAACTGGCAAGCCCAGCTCTGGGCTTCTTTCCTGTaGCTTCAGAACTCGCCAGGA +
Preference number: 4 (lower is better)
Translates to: VDKAGPSLFLVSNWQAQLWASFL*LQNSPG
Trigger: TCCTGGCGAGTTCTGAAGCCACAGGAAAGAAGCCCA...GAGCTGGGCTTGCCAGTTAGAGACCAGGAAGAGGGAGGGCCCAGCTTTGTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp CCAATGGCCCTGGCTGGCCAGTCAGGCTTGGAGAACTaGTGCCTACACAACCAAGCCAAGCACAAGGACTCT +
Preference number: 4 (lower is better)
Translates to: PMALAGQSGLEN*CLHNQAKHKDS
Trigger: AGAGTCCTTGTGCTTGGCTTGGTTGTGTAGGCACAAGTTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp ATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTGAAGGTTCAGCAGGGCACTaGTCATCTTCTTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: ISLLSVLPPQLHLVGGGEGSAGH*SSSSAS
Trigger: AGAGGCAGAAGAAGATGAGCAGTGCCCTGCTGAACC...TTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp CTGATGCAGACAGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTGGGTGGAGAGTTATTTTGGAGATGGTaGGTGAATTGCTCAGCATGC +
Preference number: 4 (lower is better)
Translates to: LMQTARGSLLWQWRVGGELFWRW*VNCSAC
Trigger: GCATGCTGAGCAATTCACCCACCATCTCCAAAATAA...CTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCTGCATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATGAAGTCCCAGAGACGTaGCCATGGCTGCCAGAACGC +
Preference number: 4 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHEVPET*PWLPER
Trigger: GCGTTCTGGCAGCCATGGTCACGTCTCTGGGACTTC...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp ATTTGTCCTTCCCTGAGACATATCTCCTCTGGGACAATGGGCTGCCTGCCTCCTTGCTACTCAGAGGCATaGTCCCTGCCGTCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: ICPSLRHISSGTMGCLPPCYSEA*SLPSSE
Trigger: CTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGCA...AGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp AGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAAGTGGGAAATGGATCAGCAGCCGGGGCTTaGTCCAGTCCCCGTAACCCT +
Preference number: 4 (lower is better)
Translates to: RWTLSVGTRNTQAKVGNGSAAGA*SSPRNP
Trigger: AGGGTTACGGGGACTGGAGCAAGCCCCGGCTGCTGA...TCCATTTCCCACTTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp ACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCAGGCCGGTCTCCTCCAGGTTGGTaGTCTTCATGTCCGTCTGCA +
Preference number: 4 (lower is better)
Translates to: TKPSTRTLVLQIRCRSGRSPPGW*SSCPSA
Trigger: TGCAGACGGACATGAAGACCACCAACCTGGAGGAGA...CCGGCCTGAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TTTGCTCACTCGGAACACTCAATGCACAGATGGCTGCAGTTAAATAAGGGAGGGCATGGGGCAGGGGGTTaGGAGCTACCCTCCTCACCA +
Preference number: 4 (lower is better)
Translates to: FAHSEHSMHRWLQLNKGGHGAGG*ELPSSP
Trigger: TGGTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATG...CCCTCCCTTATTTAACTGCAGCCATCTGTGCATTGAGTGTTCCGAGTGAGCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TTTGTTTTGCCAATGGCCCTGGCTGGCCAGTCAGGCTaGGAGAACTTGTGCCTACACAACCAAGCCAAGCAC +
Preference number: 4 (lower is better)
Translates to: FVLPMALAGQSG*ENLCLHNQAKH
Trigger: GTGCTTGGCTTGGTTGTGTAGGCACAAGTTCTCCAAGCCTGACTGGCCAGCCAGGGCCATTGGCAAAACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp ATTTGTCCTTCCCTGAGACATATCTCCTCTGGGACAATGGGCTGCCTGCCTCCTTTTGGAGATGGTGGGTaGATTGCTCAGCATGCGGTC +
Preference number: 4 (lower is better)
Translates to: ICPSLRHISSGTMGCLPPFGDGG*IAQHAV
Trigger: GACCGCATGCTGAGCAATTCACCCACCATCTCCAAA...AGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCGGCTGCTTTTGCACTaGGATGTTGGATGGGGAGCG +
Preference number: 4 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHRLLLH*DVGWGA
Trigger: CGCTCCCCATCCAACATCTCAGTGCAAAAGCAGCCG...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp AGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAAGTGGGAAATGGACTCCACAGGTGGTGGTaGCAAGGGCTGCAGTTCTGG +
Preference number: 4 (lower is better)
Translates to: RWTLSVGTRNTQAKVGNGLHRWW*QGLQFW
Trigger: CCAGAACTGCAGCCCTTGTCACCACCACCTGTGGAG...TCCATTTCCCACTTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp TCAGGCTTCACCCTCATTTACTGGGGCAGCTTCAAGACAGGCTTTGCCTTTAATCAGCTGCTCCTGCAGTaGACCCAGCTCCTCTCTCAG +
Preference number: 4 (lower is better)
Translates to: SGFTLIYWGSFKTGFAFNQLLLQ*TQLLSQ
Trigger: CTGAGAGAGGAGCTGGGTGCACTGCAGGAGCAGCTG...ATTAAAGGCAAAGCCTGTCTTGAAGCTGCCCCAGTAAATGAGGGTGAAGCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp GCCCTGGCCTTGAGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAACTGCTTCTCTTTTCTTaGGCCTGTGGGCCTTCCACT +
Preference number: 4 (lower is better)
Translates to: ALALRWTLSVGTRNTQAKLLLFS*ACGPST
Trigger: AGTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAG...TTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp GAGGCAGTGGGGGAGAAAACCGGGAGGAACAAGGAGCCCATGGGACAAGGACTCCGTAACCCTTTATTTTaGAGATGGTGGGTGAATTGC +
Preference number: 4 (lower is better)
Translates to: EAVGEKTGRNKEPMGQGLRNPLF*RWWVNC
Trigger: GCAATTCACCCACCATCTCCAAAATAAAGGGTTACG...GAGTCCTTGTCCCATGGGCTCCTTGTTCCTCCCGGTTTTCTCCCCCACTGCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGCCTTCTCGCCTTCCCTaGCTGTCTCCAACTCCTTCT +
Preference number: 4 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQPSRLP*LSPTPS
Trigger: AGAAGGAGTTGGAGACAGCCAGGGAAGGCGAGAAGG...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp AGAGTTCTCTTTGCAGGACTGTCTGCTGCCCTGGCCTaGAGGTGGACGTTATCTGTGGGCACTAGAAACACA +
Preference number: 4 (lower is better)
Translates to: RVLFAGLSAALA*RWTLSVGTRNT
Trigger: TGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp GTCACTGACCCAGCTCTGCACATACCTGGGCCTCCTTaGGTTCTGAATGCTGAGGTCAGAGGTCCTTACAAA +
Preference number: 4 (lower is better)
Translates to: VTDPALHIPGPP*VLNAEVRGPYK
Trigger: TTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAAAGGAGGCCCAGGTATGTGCAGAGCTGGGTCAGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp ATTTGTCCTTCCCTGAGACATATCTCCTCTGGGACAATGGGCTGCCTGCCTCCTTCTGCCGATCCTTTCTaGTGTTCTCCTCTTCCAAGC +
Preference number: 4 (lower is better)
Translates to: ICPSLRHISSGTMGCLPPSADPF*CSPLPS
Trigger: GCTTGGAAGAGGAGAACAGCAGAAAGGATCGGCAGA...AGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp GCCCTGGCCTTGAGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAACCTTTCGGCTGCTTTTaGACTGAGATGTTGGATGGG +
Preference number: 4 (lower is better)
Translates to: ALALRWTLSVGTRNTQAKPFGCF*TEMLDG
Trigger: CCCATCCAACATCTCAGTGCAAAAGCAGCCGAAAGG...TTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCCTCAAAGCCTGCTCCTaGTCCTGCCTCCCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCILKACS*SCLPFS
Trigger: CGAGAAGGGGAGGCAGGAGCAGGAGCAGGCTTTGAG...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp ATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTGAATCACTTTTCTGGGTTTaGAGTAGTAGGGCGACTTTG +
Preference number: 4 (lower is better)
Translates to: ISLLSVLPPQLHLVGGGESLFWV*SSRATL
Trigger: CAAAGTCGCCCTACTACTCCAAACCCAGAAAAGTGA...TTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp AGTAGACTCTGTAAGAGTTCTCTTTGCAGGACTGTCTGCTGCCCTGGCCTTGAGACTATTGTCAGAGTCTaGCTCGGAGTGCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SRLCKSSLCRTVCCPGLETIVRV*LGVPAA
Trigger: TGCAGCAGGCACTCCGAGCCAGACTCTGACAATAGT...CTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCTTACAGAGTCTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR TCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATGTAGGGCGACTTTGGTaGTGTGGAAGGAGGTTTGTG +
Preference number: 4 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHVGRLW*CGRRFV
Trigger: CACAAACCTCCTTCCACATCACCAAAGTCGCCCTAC...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp GCCCTGGCCTTGAGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAATTCTCCTTGCATTGCTaGTCCAGCCTGAAGATCCTT +
Preference number: 4 (lower is better)
Translates to: ALALRWTLSVGTRNTQAKFSLHC*SSLKIL
Trigger: AAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAA...TTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGTCCTTCTCCTTGCATTaGTGCTCCAGCCTGAAGATC +
Preference number: 4 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQSFSLH*CSSLKI
Trigger: GATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGA...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp GAGGCAGTGGGGGAGAAAACCGGGAGGAACAAGGAGCCCATGGGACAAGGACTCGTGGAAGGAGGTTTGTaGAAACTTTTCCTTTTTGTT +
Preference number: 4 (lower is better)
Translates to: EAVGEKTGRNKEPMGQGLVEGGL*KLFLFV
Trigger: AACAAAAAGGAAAAGTTTCCACAAACCTCCTTCCAC...GAGTCCTTGTCCCATGGGCTCCTTGTTCCTCCCGGTTTTCTCCCCCACTGCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp ACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTTGTATCTCCTCCTTCAGGCTCTaGTTCTCCTCGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: TRSSLMSVLLVLGSLVCISSFRL*FSSVSS
Trigger: GGAGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGA...GATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp AAGCACAAGGTGATGTGGAGCTGTTGCTGTGGAAATCAGGGCACAGTGACGTCATCTCCAGGTCGATCTTaGACTGTAGCAGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: KHKVMWSCCCGNQGTVTSSPGRS*TVAAAS
Trigger: TGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGA...TGACGTCACTGTGCCCTGATTTCCACAGCAACAGCTCCACATCACCTTGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TTTGCTCACTCGGAACACTCAATGCACAGATGGCTGCAGTTAAATAAGGGAGGGAGCCTCCTCTTGTGTTaGGTTCTCTTCAGCCGGGGA +
Preference number: 4 (lower is better)
Translates to: FAHSEHSMHRWLQLNKGGSLLLC*VLFSRG
Trigger: TCCCCGGCTGAAGAGAACCCAACACAAGAGGAGGCT...CCCTCCCTTATTTAACTGCAGCCATCTGTGCATTGAGTGTTCCGAGTGAGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp CCCACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTaGGGAAGCCTGGTTTGTATCAGCCTCCTCTCTGTG +
Preference number: 4 (lower is better)
Translates to: PTRSSLMSVLLV*GSLVCISLLSV
Trigger: CACAGAGAGGAGGCTGATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TTGCTCCCACCCACACGCAGCTCACTGATGTCTGTTTaGCTAGTTTTGGGAAGCCTGGTTTGTATCAGCCTC +
Preference number: 4 (lower is better)
Translates to: LLPPTRSSLMSV*LVLGSLVCISL
Trigger: GAGGCTGATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGGTGGGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp ATACTCCTAAAACCCTGTCTAAGCCCAAAGTCCCTCATTCTCACCCACTGCCAGATGTTTCCATGGCAATaGGCATCTCCTCCAGGTTGG +
Preference number: 4 (lower is better)
Translates to: ILLKPCLSPKSLILTHCQMFPWQ*ASPPGW
Trigger: CCAACCTGGAGGAGATGCGCATTGCCATGGAAACAT...CTGGCAGTGGGTGAGAATGAGGGACTTTGGGCTTAGACAGGGTTTTAGGAGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp GGTTTGCTCCCACCCACACGCAGCTCACTGATGTCTGTTTTGCTAGTTTTGGGATTGGACTGTAGCAGCTaGTTCATCTCCAGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: GLLPPTRSSLMSVLLVLGLDCSS*FISRSF
Trigger: GAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAA...TCCCAAAACTAGCAAAACAGACATCAGTGAGCTGCGTGTGGGTGGGAGCAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp GTTTTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATAGTCTGGGACTTTGCTaGGTACAAGCTTCGAACGAG +
Preference number: 4 (lower is better)
Translates to: VLHKRQAQGPGKLVLVTHSLGLC*VQASNE
Trigger: CTCGTTCGAAGCTTGTACGCAGCAAAGTCCCAGACT...ATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp ATGACCATGCGGTCATACTGCATTAAGACTGCACCTTaGGGGTTGGAGGTGTGGCTCAGTGGTAGAGTAACA +
Preference number: 4 (lower is better)
Translates to: MTMRSYCIKTAP*GLEVWLSGRVT
Trigger: TGTTACTCTACCACTGAGCCACACCTCCAACCCCAAAGGTGCAGTCTTAATGCAGTATGACCGCATGGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp TTTGCTCACTCGGAACACTCAATGCACAGATGGCTGCAGTTAAATAAGGGAGGGTGCCTCATCCAGAGCTaGTTCTCTTTTCTTGCGCCT +
Preference number: 4 (lower is better)
Translates to: FAHSEHSMHRWLQLNKGGCLIQS*FSFLAP
Trigger: AGGCGCAAGAAAAGAGAAGCAGCTCTGGATGAGGCA...CCCTCCCTTATTTAACTGCAGCCATCTGTGCATTGAGTGTTCCGAGTGAGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp ACTGATGTCTGTTTTGCTAGTTTTGGGAAGCCTGGTTaGTATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: TDVCFASFGKPG*YQPPLCASSSA
Trigger: AGCTGAGGAGGAAGCACAGAGAGGAGGCTGATACAAACCAGGCTTCCCAAAACTAGCAAAACAGACATCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp TCAGGCTTCACCCTCATTTACTGGGGCAGCTTCAAGACAGGCTTTGCCTTTAATCTGCTCATCTTCTTCTaGCTCTTCACACCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: SGFTLIYWGSFKTGFAFNLLIFF*LFTPSF
Trigger: GAAACTGGGTGTGAAGAGGCAGAAGAAGATGAGCAG...ATTAAAGGCAAAGCCTGTCTTGAAGCTGCCCCAGTAAATGAGGGTGAAGCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp AGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAAGTGGGAAATGGAGCGACTTTGGTGATGTaGAAGGAGGTTTGTGGAAAC +
Preference number: 4 (lower is better)
Translates to: RWTLSVGTRNTQAKVGNGATLVM*KEVCGN
Trigger: GTTTCCACAAACCTCCTTCCACATCACCAAAGTCGC...TCCATTTCCCACTTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR GCA 90 bp GCCCTGGCCTTGAGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAATCCACATCACTTTTCTaGATATGTAAGGACTTCTTC +
Preference number: 4 (lower is better)
Translates to: ALALRWTLSVGTRNTQAKSTSLF*ICKDFF
Trigger: GAAGAAGTCCTTACATATGCAGAAAAGTGATGTGGA...TTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TCACCCTCATTTACTGGGGCAGCTTCAAGACAGGCTTaGCCTTTAATAGATGAGCTGCTACACCAAAGGATG +
Preference number: 4 (lower is better)
Translates to: SPSFTGAASRQA*PLIDELLHQRM
Trigger: CATCCTTTGGTGTAGCAGCTCATCTATTAAAGGCAAAGCCTGTCTTGAAGCTGCCCCAGTAAATGAGGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp ATGCGGTCATACTGCATTAAGACTGCACCTTTGGGGTaGGAGGTGTGGCTCAGTGGTAGAGTAACAAAAGAA +
Preference number: 4 (lower is better)
Translates to: MRSYCIKTAPLG*EVWLSGRVTKE
Trigger: TTCTTTTGTTACTCTACCACTGAGCCACACCTCCAACCCCAAAGGTGCAGTCTTAATGCAGTATGACCGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CCA 90 bp TTGGTTCTGAATGCTGAGGTCAGAGGTCCTTACAAAGGTCTCCACTCCTACTCACCTTTATTTTGGAGATaGTGGGTGAATTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: LVLNAEVRGPYKGLHSYSPLFWR*WVNCSA
Trigger: TGCTGAGCAATTCACCCACCATCTCCAAAATAAAGG...TGAGTAGGAGTGGAGACCTTTGTAAGGACCTCTGACCTCAGCATTCAGAACCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
3UTR CAA 72 bp TGGTCTACTCCAAGAAAGAACCTTATTAGGTTTTCCTaGAGACAAATCTCAGTTCTATGGGACCAGGAAGTT +
Preference number: 4 (lower is better)
Translates to: WSTPRKNLIRFS*RQISVLWDQEV
Trigger: AACTTCCTGGTCCCATAGAACTGAGATTTGTCTCAAGGAAAACCTAATAAGGTTCTTTCTTGGAGTAGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS GCA 90 bp AGTGCACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTTGGAGATaGTCTTGTTCCTCACACGGGGCCACCTTGGGCAGGTCCTCTGGG +
Preference number: 5 (lower is better)
Translates to: SAPSSSLRLFTVPWR*SCSSHGATLGRSSG
Trigger: CCCAGAGGACCTGCCCAAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 90 bp CCTCCTCACCAGCACTATTGTCAGAGTCTGGCTCGGAGTGCCTGCTaGAGGGCGAGGGGGCATGGAGCTCTGGATGAGCCTCATGAGTCA +
Preference number: 5 (lower is better)
Translates to: PPHQHYCQSLARSAC*RARGHGALDEPHES
Trigger: TGACTCATGAGGCTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGACTCTGACAATAGTGCTGGTGAGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp TACCCTCCTCACCAGCACTATTGTCAGAGTCTGGCTCGGAGTGCCTaGTGCAGGGCGAGGGGGCATGGAGCTCTGGATGAGCCTCATGAG +
Preference number: 5 (lower is better)
Translates to: YPPHQHYCQSLARSA*CRARGHGALDEPHE
Trigger: CTCATGAGGCTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGACTCTGACAATAGTGCTGGTGAGGAGGGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp CAGGCGGTTCCTCTGCCTCATCTTCGTCCTTCGCAGCCTCCCCACTaGTCGCCTCGCTGTTCTTTCCTGATGGACCCCATTCGGGAGAAG +
Preference number: 5 (lower is better)
Translates to: QAVPLPHLRPSQPPH*SPRCSFLMDPIREK
Trigger: CTTCTCCCGAATGGGGTCCATCAGGAAAGAACAGCGAGGCGAGCAGTGGGGAGGCTGCGAAGGACGAAGATGAGGCAGAGGAACCGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CCA 90 bp TCCTGCAGTGCACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTTaGAGATGCTCTTGTTCCTCACACGGGGCCACCTTGGGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: SCSAPSSSLRLFTVP*RCSCSSHGATLGRS
Trigger: GGACCTGCCCAAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCACTGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 90 bp CGCCTGCAGGGTCCTAATGGCAGCCTCTCTCCTCTCTTCAGAGCATaGGGCAGGGGGTTGGGAGCTACCCTCCTCACCAGCACTATTGTC +
Preference number: 5 (lower is better)
Translates to: RLQGPNGSLSPLFRA*GRGLGATLLTSTIV
Trigger: GACAATAGTGCTGGTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATGCTCTGAAGAGAGGAGAGAGGCTGCCATTAGGACCCTGCAGGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp ACAGTCGCTGCCTCATCCAGAGCTGCTTCTCTTTTCTTGCGCCTGTaGGCCTTCCACTGCGCCTGCAGGGTCCTAATGGCAGCCTCTCTC +
Preference number: 5 (lower is better)
Translates to: TVAASSRAASLFLRL*AFHCACRVLMAASL
Trigger: GAGAGAGGCTGCCATTAGGACCCTGCAGGCGCAGTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAGCTCTGGATGAGGCAGCGACTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp GAGGACGCCGCAATCTCTCGACAGCAGCTGGCAATGAACCTGGCCTaGGCCAGGTATCCACGGAGGATGGACTGGATAACGATGACAGCC +
Preference number: 5 (lower is better)
Translates to: EDAAISRQQLAMNLA*ARYPRRMDWITMTA
Trigger: GGCTGTCATCGTTATCCAGTCCATCCTCCGTGGATACCTGGCCCAGGCCAGGTTCATTGCCAGCTGCTGTCGAGAGATTGCGGCGTCCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 90 bp GGGGTTGGGCCACACCTGTTTCGAGGATCCCAGCCACAGCTTCTGTaGGGTCAAGGACATTCTGCTACTCAGAGGCATGCTCCCTGCCGT +
Preference number: 5 (lower is better)
Translates to: GVGPHLFRGSQPQLL*GQGHSATQRHAPCR
Trigger: ACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAACAGGTGTGGCCCAACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135028.5
CDS GCA 90 bp CGGTCCAGGTCCTCCTTCAGGCTCTGGTTCTCCTCGGTCAGCTCCTaGACACTCCGTGTTAGGTTCAGCAGGGCACTGCTCATCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RSRSSFRLWFSSVSS*TLRVRFSRALLIFF
Trigger: GAAGAAGATGAGCAGTGCCCTGCTGAACCTAACACGGAGTGTGCAGGAGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp TTGGTGAGTGCTTCAACTTCCTCCCTCAAAGCCTGCTCCTGCTCCTaGCTCCCCTTCTCGCCTTCCCTGGCTGTCTCCAACTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: LVSASTSSLKACSCS*LPFSPSLAVSNSFS
Trigger: GGAGAAGGAGTTGGAGACAGCCAGGGAAGGCGAGAAGGGGAGGCAGGAGCAGGAGCAGGCTTTGAGGGAGGAAGTTGAAGCACTCACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 90 bp GTGGGTGAATTGCTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCTaGTTCTCCTCGGTCAGCTCCTGCACACTCCGTGTTAGGTTCAGC +
Preference number: 5 (lower is better)
Translates to: VGELLSMRSRSSFRL*FSSVSSCTLRVRFS
Trigger: GCTGAACCTAACACGGAGTGTGCAGGAGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 90 bp GTCTGGCTCGGAGTGCCTGCTGCAGGGCGAGGGGGCATGGAGCTCTaGATGAGCCTCATGAGTCACTGCTACGAAGGAGTTTTTCTCTTC +
Preference number: 5 (lower is better)
Translates to: VWLGVPAAGRGGMEL*MSLMSHCYEGVFLF
Trigger: GAAGAGAAAAACTCCTTCGTAGCAGTGACTCATGAGGCTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp CCCAGAGACGTGACCCTGTTTCGAGGATCCCAGCCACAGCTTCTGTaGGGTCAAGGACATTCTGCTACTCAGAGGCATGCTCCCTGCCGT +
Preference number: 5 (lower is better)
Translates to: PRDVTLFRGSQPQLL*GQGHSATQRHAPCR
Trigger: ACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAACAGGGTCACGTCTCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077890.12
CDS-3UTR CAA 90 bp CTGATGCAGACAGCCAGGGGCAGTCTGCTCTGGCAATGGCGCGTGGGTGGAGAGCCAAGCGCCGAAGCTTaGTTCTCATCAGATCCACAT +
Preference number: 5 (lower is better)
Translates to: LMQTARGSLLWQWRVGGEPSAEA*FSSDPH
Trigger: ATGTGGATCTGATGAGAACAAAGCTTCGGCGCTTGG...CTCTCCACCCACGCGCCATTGCCAGAGCAGACTGCCCCTGGCTGTCTGCATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS GCA 90 bp GTTTCGAGGATCCCAGCCACAGCTTCTGTGGGGTCAAGGACATTCTaGTACTCAGAGGCATGCTCCCTGCCGTCTTCAGAGATCGCCAGG +
Preference number: 5 (lower is better)
Translates to: VSRIPATASVGSRTF*YSEACSLPSSEIAR
Trigger: CCTGGCGATCTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS GCA 90 bp TGTAGCAGCTGCTTCATCTCCAGGTCTTTCTCCAGCAGCTGCTCCTaGAGTGCACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTTGG +
Preference number: 5 (lower is better)
Translates to: CSSCFISRSFSSSCS*SAPSSSLRLFTVPW
Trigger: CCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCACTGCAGGAGCAGCTGCTGGAGAAAGACCTGGAGATGAAGCAGCTGCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 90 bp TTGGGCCACACTACCCTGTTTCGAGGATCCCAGCCACAGCTTCTGTaGGGTCAAGGACATTCTGCTACTCAGAGGCATGCTCCCTGCCGT +
Preference number: 5 (lower is better)
Translates to: LGHTTLFRGSQPQLL*GQGHSATQRHAPCR
Trigger: ACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAACAGGGTAGTGTGGCCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CAA 90 bp CTACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCGCATGGGGCAGGGGGTaGGGAGCTACCCTCCTCACC +
Preference number: 5 (lower is better)
Translates to: LHNQAKHKDSCLTDQVPFAWGRG*GATLLT
Trigger: GGTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATGC...GAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS GCA 90 bp GCCACAGCTTCTGTGGGGTCAAGGACATTCTGCTACTCAGAGGCATaGTCCCTGCCGTCTTCAGAGATCGCCAGGAGGTCACTTTTCTGG +
Preference number: 5 (lower is better)
Translates to: ATASVGSRTFCYSEA*SLPSSEIARRSLFW
Trigger: CCAGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS CCA 90 bp CCAGCCCGTGTCAGGCTTCTTCTCTGCCAAGGTTCGCACGAAGTCTaGGCCTCGACTTGGATCCAGAAGCTGTTCTATCTGCCGATCCTT +
Preference number: 5 (lower is better)
Translates to: PARVRLLLCQGSHEV*ASTWIQKLFYLPIL
Trigger: AAGGATCGGCAGATAGAACAGCTTCTGGATCCAAGTCGAGGCCCAGACTTCGTGCGAACCTTGGCAGAGAAGAAGCCTGACACGGGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp CTGCGTACAAGCTTCGAACGAGCTAGGTGTCCCCTGAAGGCTGCCTaGAGCACAGTCGCTGCCTCATCCAGAGCTGCTTCTCTTTTCTTG +
Preference number: 5 (lower is better)
Translates to: LRTSFERARCPLKAA*STVAASSRAASLFL
Trigger: CAAGAAAAGAGAAGCAGCTCTGGATGAGGCAGCGACTGTGCTCCAGGCAGCCTTCAGGGGACACCTAGCTCGTTCGAAGCTTGTACGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp CTGGCAATGAACCTGGCCTGGGCCAGGTATCCACGGAGGATGGACTaGATAACGATGACAGCCTCCTCTTGTGTTGGGTTCTCTTCAGCC +
Preference number: 5 (lower is better)
Translates to: LAMNLAWARYPRRMD*ITMTASSCVGFSSA
Trigger: GGCTGAAGAGAACCCAACACAAGAGGAGGCTGTCATCGTTATCCAGTCCATCCTCCGTGGATACCTGGCCCAGGCCAGGTTCATTGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 90 bp TTGGGCCACAATACCCTGTTTCGAGGATCCCAGCCACAGCTTCTGTaGGGTCAAGGACATTCTGCTACTCAGAGGCATGCTCCCTGCCGT +
Preference number: 5 (lower is better)
Translates to: LGHNTLFRGSQPQLL*GQGHSATQRHAPCR
Trigger: ACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAACAGGGTATTGTGGCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142081.6
CDS TCA 90 bp GGGCTTGCTCCAGTCCCCGTAACCCTTTATTTTGGAGATGGTGGGTaGATTGCTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCTGGTT +
Preference number: 5 (lower is better)
Translates to: GLAPVPVTLYFGDGG*IAQHAVQVLLQALV
Trigger: AACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGGACTGGAGCAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp CCCCGTAACCCTTTATTTTGGAGATGGTGGGTGAATTGCTCAGCATaGGGTCCAGGTCCTCCTTCAGGCTCTGGTTCTCCTCGGTCAGCT +
Preference number: 5 (lower is better)
Translates to: PRNPLFWRWWVNCSA*GPGPPSGSGSPRSA
Trigger: AGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp TCTCGCCTTCCCTGGCTGTCTCCAACTCCTTCTCCAGGTCGATCTTaGACTGTAGCAGCTGCTTCATCTCCAGGTCTTTCTCCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: SRLPWLSPTPSPGRS*TVAAASSPGLSPAA
Trigger: AGCTGCTGGAGAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGAAGGAGTTGGAGACAGCCAGGGAAGGCGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS-3UTR CAA 90 bp ATCAGCCTCCTCTCTGTGCTTCCTCCTCAGCTGCATCTGGTGGGTGGAGGTGAACTGAAGATCCTTTGTTaGAGCCCGGTGATGACCCAG +
Preference number: 5 (lower is better)
Translates to: ISLLSVLPPQLHLVGGGELKILC*SPVMTQ
Trigger: CTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAG...TTCACCTCCACCCACCAGATGCAGCTGAGGAGGAAGCACAGAGAGGAGGCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CAA 90 bp ACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCAGGCCGGGTGTTGTCCTTCTCCTaGCATTGCTGCTCCAGCCTG +
Preference number: 5 (lower is better)
Translates to: TKPSTRTLVLQIRCRSGRVLSFS*HCCSSL
Trigger: CAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACAC...CCGGCCTGAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CAA 90 bp ATTTGTCCTTCCCTGAGACATATCTCCTCTGGGACAATGGGCTGCCTGCCTCCTGAGATGGTGGGTGAATaGCTCAGCATGCGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: ICPSLRHISSGTMGCLPPEMVGE*LSMRSR
Trigger: CCTGGACCGCATGCTGAGCAATTCACCCACCATCTC...AGGAGGCAGGCAGCCCATTGTCCCAGAGGAGATATGTCTCAGGGAAGGACAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CAA 90 bp GCCCTGGCCTTGAGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAAGCTGCTTCTCTTTTCTaGCGCCTGTGGGCCTTCCAC +
Preference number: 5 (lower is better)
Translates to: ALALRWTLSVGTRNTQAKAASLF*RLWAFH
Trigger: GTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAGC...TTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCTCAAGGCCAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS GCA 90 bp CTTCTGTGGGGTCAAGGACATTCTGCTACTCAGAGGCATGCTCCCTaGCGTCTTCAGAGATCGCCAGGAGGTCACTTTTCTGGGTTTGGA +
Preference number: 5 (lower is better)
Translates to: LLWGQGHSATQRHAP*RLQRSPGGHFSGFG
Trigger: TCCAAACCCAGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS GCA 90 bp TGCTCCAGTCCCCGTAACCCTTTATTTTGGAGATGGTGGGTGAATTaGTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCTGGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: CSSPRNPLFWRWWVN*SACGPGPPSGSGSP
Trigger: AGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGGACTGGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp GCATGCTCCCTGCCGTCTTCAGAGATCGCCAGGAGGTCACTTTTCTaGGTTTGGAGTAGTAGGGCGACTTTGGTGATGTGGAAGGAGGTT +
Preference number: 5 (lower is better)
Translates to: ACSLPSSEIARRSLF*VWSSRATLVMWKEV
Trigger: AACCTCCTTCCACATCACCAAAGTCGCCCTACTACTCCAAACCCAGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGAGCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS-3UTR CAA 90 bp TTACACAAACGCCAGGCACAGGGCCCTGGGAAATTAGTTCTGGTTACCCATCAGTCCTTGGAGATGCTCTaGTTCCTCACACGGGGCCAC +
Preference number: 5 (lower is better)
Translates to: LHKRQAQGPGKLVLVTHQSLEML*FLTRGH
Trigger: GTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGA...CTGATGGGTAACCAGAACTAATTTCCCAGGGCCCTGTGCCTGGCGTTTGTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS GCA 90 bp GCAGGGCGAGGGGGCATGGAGCTCTGGATGAGCCTCATGAGTCACTaGTACGAAGGAGTTTTTCTCTTCTCTCTTAGCTTCTTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: AGRGGMELWMSLMSH*YEGVFLFSLSFFQF
Trigger: GAACTGGAAGAAGCTAAGAGAGAAGAGAAAAACTCCTTCGTAGCAGTGACTCATGAGGCTCATCCAGAGCTCCATGCCCCCTCGCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp AGGAACTCACCTTTATTTTGGAGATGGTGGGTGAATTGCTCAGCATaGGGTCCAGGTCCTCCTTCAGGCTCTGGTTCTCCTCGGTCAGCT +
Preference number: 5 (lower is better)
Translates to: RNSPLFWRWWVNCSA*GPGPPSGSGSPRSA
Trigger: AGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CCA 90 bp TCCCTGCCGTCTTCAGAGATCGCCAGGAGGTCACTTTTCTGGGTTTaGAGTAGTAGGGCGACTTTGGTGATGTGGAAGGAGGTTTGTGGA +
Preference number: 5 (lower is better)
Translates to: SLPSSEIARRSLFWV*SSRATLVMWKEVCG
Trigger: TCCACAAACCTCCTTCCACATCACCAAAGTCGCCCTACTACTCCAAACCCAGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS CCA 90 bp AGGCTTCTTCTCTGCCAAGGTTCGCACGAAGTCTGGGCCTCGACTTaGATCCAGAAGCTGTTCTATCTGCCGATCCTTTCTGCTGTTCTC +
Preference number: 5 (lower is better)
Translates to: RLLLCQGSHEVWAST*IQKLFYLPILSAVL
Trigger: GAGAACAGCAGAAAGGATCGGCAGATAGAACAGCTTCTGGATCCAAGTCGAGGCCCAGACTTCGTGCGAACCTTGGCAGAGAAGAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp CCAGGAGGGTCTGCAGACGATGGATCTCTTCGTAGTATGTTTCCATaGCAATGCGCATCTCCTCCAGGTTGGTGGTCTTCATGTCCGTCT +
Preference number: 5 (lower is better)
Translates to: PGGSADDGSLRSMFP*QCASPPGWWSSCPS
Trigger: AGACGGACATGAAGACCACCAACCTGGAGGAGATGCGCATTGCCATGGAAACATACTACGAAGAGATCCATCGTCTGCAGACCCTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp TGCTCATCTTCTTCTGCCTCTTCACACCCAGTTTCTTCTCCACCATaGGCTTCTTTCCTGTGGCTTCAGAACTCGCCAGGAGGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: CSSSSASSHPVSSPP*ASFLWLQNSPGGSA
Trigger: TGCAGACCCTCCTGGCGAGTTCTGAAGCCACAGGAAAGAAGCCCATGGTGGAGAAGAAACTGGGTGTGAAGAGGCAGAAGAAGATGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp GGGTCTGCAGACGATGGATCTCTTCGTAGTATGTTTCCATGGCAATaGGCATCTCCTCCAGGTTGGTGGTCTTCATGTCCGTCTGCAGTT +
Preference number: 5 (lower is better)
Translates to: GSADDGSLRSMFPWQ*ASPPGWWSSCPSAV
Trigger: AACTGCAGACGGACATGAAGACCACCAACCTGGAGGAGATGCGCATTGCCATGGAAACATACTACGAAGAGATCCATCGTCTGCAGACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 90 bp GGCTTTCTGAGGAACTCACCTTTATTTTGGAGATGGTGGGTGAATTaGTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCTGGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: GFLRNSPLFWRWWVN*SACGPGPPSGSGSP
Trigger: AGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCTCAGAAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS GCA 90 bp TCCGTCTGCAGTTTGTTGATAGTGTTGTCCTTCTCCTTGCATTGCTaGTCCAGCCTGAAGATCCTTTGTTTGAGCCCGGTGATGACCCAG +
Preference number: 5 (lower is better)
Translates to: SVCSLLIVLSFSLHC*SSLKILCLSPVMTQ
Trigger: CTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCAACAAACTGCAGACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 90 bp TCGATTGCTTTGGGCTTTCTGAGGAACTCACCTTTATTTTGGAGATaGTGGGTGAATTGCTCAGCATGCGGTCCAGGTCCTCCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: SIALGFLRNSPLFWR*WVNCSACGPGPPSG
Trigger: GCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCTCAGAAAGCCCAAAGCAATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS GCA 90 bp ATGTCCGTCTGCAGTTTGTTGATAGTGTTGTCCTTCTCCTTGCATTaGTGCTCCAGCCTGAAGATCCTTTGTTTGAGCCCGGTGATGACC +
Preference number: 5 (lower is better)
Translates to: MSVCSLLIVLSFSLH*CSSLKILCLSPVMT
Trigger: GGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCAACAAACTGCAGACGGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS-3UTR CAA 90 bp AGGTGGACGTTATCTGTGGGCACTAGAAACACACAGGCTAAAGTGGGAAATGGAGTCCTTCTCCTTGCATaGCTGCTCCAGCCTGAAGAT +
Preference number: 5 (lower is better)
Translates to: RWTLSVGTRNTQAKVGNGVLLLA*LLQPED
Trigger: ATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGAC...TCCATTTCCCACTTTAGCCTGTGTGTTTCTAGTGCCCACAGATAACGTCCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS TCA 90 bp TGGAGCACAGTCGCTGCCTCATCCAGAGCTGCTTCTCTTTTCTCATaGGTCACTGCTACGAAGGAGTTTTTCTCTTCTCTCTTAGCTTCT +
Preference number: 5 (lower is better)
Translates to: WSTVAASSRAASLFS*VTATKEFFSSLLAS
Trigger: AGAAGCTAAGAGAGAAGAGAAAAACTCCTTCGTAGCAGTGACTCATGAGAAAAGAGAAGCAGCTCTGGATGAGGCAGCGACTGTGCTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS-3UTR CAA 90 bp AGTAGACTCTGTAAGAGTTCTCTTTGCAGGACTGTCTGCTGCCCTGGCCTTGAGAGTTTGTTGATAGTGTaGTCCTTCTCCTTGCATTGC +
Preference number: 5 (lower is better)
Translates to: SRLCKSSLCRTVCCPGLESLLIV*SFSLHC
Trigger: GCAATGCAAGGAGAAGGACAACACTATCAACAAACT...CTCAAGGCCAGGGCAGCAGACAGTCCTGCAAAGAGAACTCTTACAGAGTCTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS-3UTR CAA 90 bp TCAGGCTTCACCCTCATTTACTGGGGCAGCTTCAAGACAGGCTTTGCCTTTAATTCCGTCTGCAGTTTGTaGATAGTGTTGTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: SGFTLIYWGSFKTGFAFNSVCSL*IVLSFS
Trigger: GGAGAAGGACAACACTATCAACAAACTGCAGACGGA...ATTAAAGGCAAAGCCTGTCTTGAAGCTGCCCCAGTAAATGAGGGTGAAGCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS TCA 90 bp GATCCACATCACTTTTCTGCATATGTAAGGACTTCTTCAACTCGATaGTCTCGTCGTACATGTCCTCCTTCTCTCTGTAGACGGAAGTCC +
Preference number: 5 (lower is better)
Translates to: DPHHFSAYVRTSSTR*SRRTCPPSLCRRKS
Trigger: GGACTTCCGTCTACAGAGAGAAGGAGGACATGTACGACGAGATCATCGAGTTGAAGAAGTCCTTACATATGCAGAAAAGTGATGTGGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000142081.6
CDS-3UTR CAA 90 bp CTACACAACCAAGCCAAGCACAAGGACTCTTGTCTTACAGATCAGGTGCCGTTCGATGTGGAAGGAGGTTaGTGGAAACTTTTCCTTTTT +
Preference number: 5 (lower is better)
Translates to: LHNQAKHKDSCLTDQVPFDVEGG*WKLFLF
Trigger: AAAAAGGAAAAGTTTCCACAAACCTCCTTCCACATC...GAACGGCACCTGATCTGTAAGACAAGAGTCCTTGTGCTTGGCTTGGTTGTGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS CCA 72 bp CACGCGTGCTCCGAGGTAAGCGTGGGGCTCGGGGGTTaGGCCACAATACCCTGTTTCGAGGATCCCAGCCAC +
Preference number: 6 (lower is better)
Translates to: HACSEVSVGLGG*ATIPCFEDPSH
Trigger: GTGGCTGGGATCCTCGAAACAGGGTATTGTGGCCCAACCCCCGAGCCCCACGCTTACCTCGGAGCACGCGTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142081.6
CDS TCA 72 bp CTCCTCCGAGGCACAGAGCTCCTTGCGGATCACTCCTaGGTAGGGCTGCAGGTCAGGCGGTTCCTCTGCCTC +
Preference number: 6 (lower is better)
Translates to: LLRGTELLADHS*VGLQVRRFLCL
Trigger: GAGGCAGAGGAACCGCCTGACCTGCAGCCCTACTCAGGAGTGATCCGCAAGGAGCTCTGTGCCTCGGAGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp GGCCCGGCAGGCTGGGAGACCTGGAGTCTGGGACTTTaGTGCGTACAAGCTTCGAACGAGCTAGGTGTCCCC +
Preference number: 6 (lower is better)
Translates to: GPAGWETWSLGL*CVQASNELGVP
Trigger: GGGGACACCTAGCTCGTTCGAAGCTTGTACGCAGCAAAGTCCCAGACTCCAGGTCTCCCAGCCTGCCGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp AGGTCTCCCTCAGCTCCTCCGAGGCACAGAGCTCCTTaGGGATCACTCCTGAGTAGGGCTGCAGGTCAGGCG +
Preference number: 6 (lower is better)
Translates to: RSPSAPPRHRAP*GSLLSRAAGQA
Trigger: CGCCTGACCTGCAGCCCTACTCAGGAGTGATCCGCAAGGAGCTCTGTGCCTCGGAGGAGCTGAGGGAGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 72 bp GAGGTCTCCCTCAGCTCCTCCGAGGCACAGAGCTCCTaGCGGATCACTCCGGGAGAAGCTCTGAGGGAGGGT +
Preference number: 6 (lower is better)
Translates to: EVSLSSSEAQSS*RITPGEALREG
Trigger: ACCCTCCCTCAGAGCTTCTCCCGGAGTGATCCGCAAGGAGCTCTGTGCCTCGGAGGAGCTGAGGGAGACCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041783.14
CDS CAA 90 bp GGGCTGAGAAGGCCCGGCAGGCTGGGAGACCTGGAGTCTGGGACTTaGCTGCGTACAAGCTTCGAACGAGCTAGGTGTCCCCTGAAGGCT +
Preference number: 6 (lower is better)
Translates to: GLRRPGRLGDLESGT*LRTSFERARCPLKA
Trigger: AGCCTTCAGGGGACACCTAGCTCGTTCGAAGCTTGTACGCAGCAAAGTCCCAGACTCCAGGTCTCCCAGCCTGCCGGGCCTTCTCAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS TCA 72 bp GAGAGGACGCCGCAATCTCTCGACAGCAGCTGGCAATaGACCTGGCCTGGGCCAGGTATCCACGGAGGATGG +
Preference number: 6 (lower is better)
Translates to: ERTPQSLDSSWQ*TWPGPGIHGGW
Trigger: CCATCCTCCGTGGATACCTGGCCCAGGCCAGGTTCATTGCCAGCTGCTGTCGAGAGATTGCGGCGTCCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp CAGCACTATTGTCAGAGTCTGGCTCGGAGTGCCTGCTaGAGGGCGAGGGGGCATGGAGCTCTGGATGAGCCT +
Preference number: 6 (lower is better)
Translates to: QHYCQSLARSAC*RARGHGALDEP
Trigger: AGGCTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGACTCTGACAATAGTGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 72 bp CACCAGCACTATTGTCAGAGTCTGGCTCGGAGTGCCTaGTGCAGGGCGAGGGGGCATGGAGCTCTGGATGAG +
Preference number: 6 (lower is better)
Translates to: HQHYCQSLARSA*CRARGHGALDE
Trigger: CTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGACTCTGACAATAGTGCTGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp GGTCCTAATGGCAGCCTCTCTCCTCTCTTCAGAGCATaGGGCAGGGGGTTGGGAGCTACCCTCCTCACCAGC +
Preference number: 6 (lower is better)
Translates to: GPNGSLSPLFRA*GRGLGATLLTS
Trigger: GCTGGTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATGCTCTGAAGAGAGGAGAGAGGCTGCCATTAGGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp AGGCCCGGCAGGCTGGGAGACCTGGAGTCTGGGACTTaGCTGCGTACAAGCTTCGAACGAGCTAGGTGTCCC +
Preference number: 6 (lower is better)
Translates to: RPGRLGDLESGT*LRTSFERARCP
Trigger: GGGACACCTAGCTCGTTCGAAGCTTGTACGCAGCAAAGTCCCAGACTCCAGGTCTCCCAGCCTGCCGGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 90 bp ACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTTGGAGATGCTCTaGTTCCTCACACGGGGCCACCTTGGGCAGGTCCTCTGGGGACTG +
Preference number: 6 (lower is better)
Translates to: TQLLSQALHGSLEML*FLTRGHLGQVLWGL
Trigger: CAGTCCCCAGAGGACCTGCCCAAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 90 bp CTCCTGCAGTGCACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTaGGAGATGCTCTTGTTCCTCACACGGGGCCACCTTGGGCAGGTC +
Preference number: 6 (lower is better)
Translates to: LLQCTQLLSQALHGS*EMLLFLTRGHLGQV
Trigger: GACCTGCCCAAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCACTGCAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp GCTTCAACTTCCTCCCTCAAAGCCTGCTCCTGCTCCTaGCTCCCCTTCTCGCCTTCCCTGGCTGTCTCCAAC +
Preference number: 6 (lower is better)
Translates to: ASTSSLKACSCS*LPFSPSLAVSN
Trigger: GTTGGAGACAGCCAGGGAAGGCGAGAAGGGGAGGCAGGAGCAGGAGCAGGCTTTGAGGGAGGAAGTTGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp GGCTGCCTGGAGCACAGTCGCTGCCTCATCCAGAGCTaGTTCTCTTTTCTTGCGCCTGTGGGCCTTCCACTG +
Preference number: 6 (lower is better)
Translates to: GCLEHSRCLIQS*FSFLAPVGLPL
Trigger: CAGTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAGCTCTGGATGAGGCAGCGACTGTGCTCCAGGCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS TCA 72 bp TGCTGCGTACAAGCTTCGAACGAGCTAGGTGTCCCCTaGAGGCTGCCTGGAGCACAGTCGCTGCCTCATCCA +
Preference number: 6 (lower is better)
Translates to: CCVQASNELGVP*RLPGAQSLPHP
Trigger: TGGATGAGGCAGCGACTGTGCTCCAGGCAGCCTTCAGGGGACACCTAGCTCGTTCGAAGCTTGTACGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp CCTCTGCCTCATCTTCGTCCTTCGCAGCCTCCCCACTaGTCGCCTCGCTGTTCTTTCCTGATGGACCCCATT +
Preference number: 6 (lower is better)
Translates to: PLPHLRPSQPPH*SPRCSFLMDPI
Trigger: AATGGGGTCCATCAGGAAAGAACAGCGAGGCGAGCAGTGGGGAGGCTGCGAAGGACGAAGATGAGGCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CCA 72 bp TTGCTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCTaGTTCTCCTCGGTCAGCTCCTGCACACTCCGTGTT +
Preference number: 6 (lower is better)
Translates to: LLSMRSRSSFRL*FSSVSSCTLRV
Trigger: AACACGGAGTGTGCAGGAGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 72 bp GCACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTTaGAGATGCTCTTGTTCCTCACACGGGGCCACCTTG +
Preference number: 6 (lower is better)
Translates to: APSSSLRLFTVP*RCSCSSHGATL
Trigger: CAAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 72 bp GCCTCTCTCCTCTCTTCAGAGCATGGGGCAGGGGGTTaGGAGCTACCCTCCTCACCAGCACTATTGTCAGAG +
Preference number: 6 (lower is better)
Translates to: ASLLSSEHGAGG*ELPSSPALLSE
Trigger: CTCTGACAATAGTGCTGGTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATGCTCTGAAGAGAGGAGAGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp GCCTCATCCAGAGCTGCTTCTCTTTTCTTGCGCCTGTaGGCCTTCCACTGCGCCTGCAGGGTCCTAATGGCA +
Preference number: 6 (lower is better)
Translates to: ASSRAASLFLRL*AFHCACRVLMA
Trigger: TGCCATTAGGACCCTGCAGGCGCAGTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAGCTCTGGATGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp AGCTTCGAACGAGCTAGGTGTCCCCTGAAGGCTGCCTaGAGCACAGTCGCTGCCTCATCCAGAGCTGCTTCT +
Preference number: 6 (lower is better)
Translates to: SFERARCPLKAA*STVAASSRAAS
Trigger: AGAAGCAGCTCTGGATGAGGCAGCGACTGTGCTCCAGGCAGCCTTCAGGGGACACCTAGCTCGTTCGAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 72 bp CTCTCTCAGGCTCTTCACGGTTCCTTGGAGATGCTCTaGTTCCTCACACGGGGCCACCTTGGGCAGGTCCTC +
Preference number: 6 (lower is better)
Translates to: LSQALHGSLEML*FLTRGHLGQVL
Trigger: GAGGACCTGCCCAAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp TCTCTTTTCTTGCGCCTGTGGGCCTTCCACTGCGCCTaGAGGGTCCTAATGGCAGCCTCTCTCCTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: SLFLRLWAFHCA*RVLMAASLLSS
Trigger: TGAAGAGAGGAGAGAGGCTGCCATTAGGACCCTGCAGGCGCAGTGGAAGGCCCACAGGCGCAAGAAAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp GCAATCTCTCGACAGCAGCTGGCAATGAACCTGGCCTaGGCCAGGTATCCACGGAGGATGGACTGGATAACG +
Preference number: 6 (lower is better)
Translates to: AISRQQLAMNLA*ARYPRRMDWIT
Trigger: CGTTATCCAGTCCATCCTCCGTGGATACCTGGCCCAGGCCAGGTTCATTGCCAGCTGCTGTCGAGAGATTGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 72 bp TGCACCCAGCTCCTCTCTCAGGCTCTTCACGGTTCCTaGGAGATGCTCTTGTTCCTCACACGGGGCCACCTT +
Preference number: 6 (lower is better)
Translates to: CTQLLSQALHGS*EMLLFLTRGHL
Trigger: AAGGTGGCCCCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS GCA 72 bp ATCCCAGCCACAGCTTCTGTGGGGTCAAGGACATTCTaGTACTCAGAGGCATGCTCCCTGCCGTCTTCAGAG +
Preference number: 6 (lower is better)
Translates to: IPATASVGSRTF*YSEACSLPSSE
Trigger: CTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS CCA 72 bp AACCTGGCCTGGGCCAGGTATCCACGGAGGATGGACTaGATAACGATGACAGCCTCCTCTTGTGTTGGGTTC +
Preference number: 6 (lower is better)
Translates to: NLAWARYPRRMD*ITMTASSCVGF
Trigger: GAACCCAACACAAGAGGAGGCTGTCATCGTTATCCAGTCCATCCTCCGTGGATACCTGGCCCAGGCCAGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 72 bp TGCTGCTCCTTTCCTCACACATGGCATCCTTCATACTaGGCACAGCCTCCAGACTGGATGAGGACGGGCAGT +
Preference number: 6 (lower is better)
Translates to: CCSFPHTWHPSY*AQPPDWMRTGS
Trigger: ACTGCCCGTCCTCATCCAGTCTGGAGGCTGTGCCCAGTATGAAGGATGCCATGTGTGAGGAAAGGAGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 72 bp TCCTTGCATTGCTGCTCCAGCCTGAAGATCCTTTGTTaGAGCCCGGTGATGACCCAGCCCGTGTCAGGCTTC +
Preference number: 6 (lower is better)
Translates to: SLHCCSSLKILC*SPVMTQPVSGF
Trigger: GAAGCCTGACACGGGCTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp CTTCTCCTTGCATTGCTGCTCCAGCCTGAAGATCCTTaGTTTGAGCCCGGTGATGACCCAGCCCGTGTCAGG +
Preference number: 6 (lower is better)
Translates to: LLLALLLQPEDP*FEPGDDPARVR
Trigger: CCTGACACGGGCTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 90 bp TTGTCCTTCTCCTTGCATTGCTGCTCCAGCCTGAAGATCCTTTGTTaGAGCCCGGTGATGACCCAGCCCGTGTCAGGCTTCTTCTCTGCC +
Preference number: 6 (lower is better)
Translates to: LSFSLHCCSSLKILC*SPVMTQPVSGFFSA
Trigger: GGCAGAGAAGAAGCCTGACACGGGCTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 90 bp TTCTCGCCTTCCCTGGCTGTCTCCAACTCCTTCTCCAGGTCGATCTaGGACTGTAGCAGCTGCTTCATCTCCAGGTCTTTCTCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: FSPSLAVSNSFSRSI*DCSSCFISRSFSSS
Trigger: GCTGCTGGAGAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGAAGGAGTTGGAGACAGCCAGGGAAGGCGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS TCA 72 bp GCAGATCCTGAGGGTGTCAATGAAACAGTTTCCCTCTaGGAGGACGCCGCAATCTCTCGACAGCAGCTGGCA +
Preference number: 6 (lower is better)
Translates to: ADPEGVNETVSL*EDAAISRQQLA
Trigger: TGCCAGCTGCTGTCGAGAGATTGCGGCGTCCTCTCAGAGGGAAACTGTTTCATTGACACCCTCAGGATCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 90 bp AGTGTTGTCCTTCTCCTTGCATTGCTGCTCCAGCCTGAAGATCCTTaGTTTGAGCCCGGTGATGACCCAGCCCGTGTCAGGCTTCTTCTC +
Preference number: 6 (lower is better)
Translates to: SVVLLLALLLQPEDP*FEPGDDPARVRLLL
Trigger: GAGAAGAAGCCTGACACGGGCTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS TCA 72 bp CCAGTCCCCGTAACCCTTTATTTTGGAGATGGTGGGTaGATTGCTCAGCATGCGGTCCAGGTCCTCCTTCAG +
Preference number: 6 (lower is better)
Translates to: PVPVTLYFGDGG*IAQHAVQVLLQ
Trigger: CTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGGACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 72 bp GGTCAAGGACATTCTGCTACTCAGAGGCATGCTCCCTaGCGTCTTCAGAGATCGCCAGGAGGTCACTTTTCT +
Preference number: 6 (lower is better)
Translates to: GQGHSATQRHAP*RLQRSPGGHFS
Trigger: AGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGCAGAATGTCCTTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS GCA 72 bp TCTGGGCCTCGACTTGGATCCAGAAGCTGTTCTATCTaGCGATCCTTTCTGCTGTTCTCCTCTTCCAAGCGC +
Preference number: 6 (lower is better)
Translates to: SGPRLGSRSCSI*RSFLLFSSSKR
Trigger: GCGCTTGGAAGAGGAGAACAGCAGAAAGGATCGGCAGATAGAACAGCTTCTGGATCCAAGTCGAGGCCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 72 bp CCCCGTAACCCTTTATTTTGGAGATGGTGGGTGAATTaGTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCT +
Preference number: 6 (lower is better)
Translates to: PRNPLFWRWWVN*SACGPGPPSGS
Trigger: AGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 72 bp AACTCCTTCTCCAGGTCGATCTTGGACTGTAGCAGCTaGTTCATCTCCAGGTCTTTCTCCAGCAGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: NSFSRSILDCSS*FISRSFSSSCS
Trigger: GGAGCAGCTGCTGGAGAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGAAGGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CCA 72 bp TGCTCCAGTCCCCGTAACCCTTTATTTTGGAGATGGTaGGTGAATTGCTCAGCATGCGGTCCAGGTCCTCCT +
Preference number: 6 (lower is better)
Translates to: CSSPRNPLFWRW*VNCSACGPGPP
Trigger: AGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGGACTGGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp GCTTGCTCCAGTCCCCGTAACCCTTTATTTTGGAGATaGTGGGTGAATTGCTCAGCATGCGGTCCAGGTCCT +
Preference number: 6 (lower is better)
Translates to: ACSSPRNPLFWR*WVNCSACGPGP
Trigger: AGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGGTTACGGGGACTGGAGCAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp TCTCTGCCAAGGTTCGCACGAAGTCTGGGCCTCGACTaGGATCCAGAAGCTGTTCTATCTGCCGATCCTTTC +
Preference number: 6 (lower is better)
Translates to: SLPRFARSLGLD*DPEAVLSADPF
Trigger: GAAAGGATCGGCAGATAGAACAGCTTCTGGATCCAAGTCGAGGCCCAGACTTCGTGCGAACCTTGGCAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp TCCCTGGCTGTCTCCAACTCCTTCTCCAGGTCGATCTaGGACTGTAGCAGCTGCTTCATCTCCAGGTCTTTC +
Preference number: 6 (lower is better)
Translates to: SLAVSNSFSRSI*DCSSCFISRSF
Trigger: GAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGAAGGAGTTGGAGACAGCCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000129704.2
CDS CAA 90 bp CAGGCTTCTTCTCTGCCAAGGTTCGCACGAAGTCTGGGCCTCGACTaGGATCCAGAAGCTGTTCTATCTGCCGATCCTTTCTGCTGTTCT +
Preference number: 6 (lower is better)
Translates to: QASSLPRFARSLGLD*DPEAVLSADPFCCS
Trigger: AGAACAGCAGAAAGGATCGGCAGATAGAACAGCTTCTGGATCCAAGTCGAGGCCCAGACTTCGTGCGAACCTTGGCAGAGAAGAAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 90 bp GGGCTTTCTGAGGAACTCACCTTTATTTTGGAGATGGTGGGTGAATaGCTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCTGGTTCTCC +
Preference number: 6 (lower is better)
Translates to: GLSEELTFILEMVGE*LSMRSRSSFRLWFS
Trigger: GGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCTCAGAAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CAA 72 bp GAGGAACTCACCTTTATTTTGGAGATGGTGGGTGAATaGCTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTC +
Preference number: 6 (lower is better)
Translates to: EELTFILEMVGE*LSMRSRSSFRL
Trigger: GAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CAA 90 bp AGCGGACCAGGGGATTCGGATTCACCAGCTCTGAAGTCGATTGCTTaGGGCTTTCTGAGGAACTCACTTTCTTTTCTAGCTCTGCGATGC +
Preference number: 6 (lower is better)
Translates to: SGPGDSDSPALKSIA*GFLRNSLSFLALRC
Trigger: GCATCGCAGAGCTAGAAAAGAAAGTGAGTTCCTCAGAAAGCCCAAAGCAATCGACTTCAGAGCTGGTGAATCCGAATCCCCTGGTCCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 90 bp AGCGGACCAGGGGATTCGGATTCACCAGCTCTGAAGTCGATTGCTTaGGGCTTTCTGAGGAACTCACCTTTATTTTGGAGATGGTGGGTG +
Preference number: 6 (lower is better)
Translates to: SGPGDSDSPALKSIA*GFLRNSPLFWRWWV
Trigger: CACCCACCATCTCCAAAATAAAGGTGAGTTCCTCAGAAAGCCCAAAGCAATCGACTTCAGAGCTGGTGAATCCGAATCCCCTGGTCCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS TCA 72 bp CTTCCTGGGCAGAAATGGCGAAAAGATAATGTCATCTaGGTCATCCGAGCAGATGTCCTCCACAGGTGGTGG +
Preference number: 6 (lower is better)
Translates to: LPGQKWRKDNVI*VIRADVLHRWW
Trigger: CCACCACCTGTGGAGGACATCTGCTCGGATGACTCAGATGACATTATCTTTTCGCCATTTCTGCCCAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS GCA 72 bp AGGAACTCACCTTTATTTTGGAGATGGTGGGTGAATTaGTCAGCATGCGGTCCAGGTCCTCCTTCAGGCTCT +
Preference number: 6 (lower is better)
Translates to: RNSPLFWRWWVN*SACGPGPPSGS
Trigger: AGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CCA 72 bp TCTTCAGAGATCGCCAGGAGGTCACTTTTCTGGGTTTaGAGTAGTAGGGCGACTTTGGTGATGTGGAAGGAG +
Preference number: 6 (lower is better)
Translates to: SSEIARRSLFWV*SSRATLVMWKE
Trigger: CTCCTTCCACATCACCAAAGTCGCCCTACTACTCCAAACCCAGAAAAGTGACCTCCTGGCGATCTCTGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS CAA 90 bp CATGTCCGTCTGCAGTTTGTTGATAGTGTTGTCCTTCTCCTTGCATaGCTGCTCCAGCCTGAAGATCCTTTGTTTGAGCCCGGTGATGAC +
Preference number: 6 (lower is better)
Translates to: HVRLQFVDSVVLLLA*LLQPEDPLFEPGDD
Trigger: GTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCAACAAACTGCAGACGGACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 90 bp GTCTTCATGTCCGTCTGCAGTTTGTTGATAGTGTTGTCCTTCTCCTaGCATTGCTGCTCCAGCCTGAAGATCCTTTGTTTGAGCCCGGTG +
Preference number: 6 (lower is better)
Translates to: VFMSVCSLLIVLSFS*HCCSSLKILCLSPV
Trigger: CACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCAACAAACTGCAGACGGACATGAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp TCTGCAGACGATGGATCTCTTCGTAGTATGTTTCCATaGCAATGCGCATCTCCTCCAGGTTGGTGGTCTTCA +
Preference number: 6 (lower is better)
Translates to: SADDGSLRSMFP*QCASPPGWWSS
Trigger: TGAAGACCACCAACCTGGAGGAGATGCGCATTGCCATGGAAACATACTACGAAGAGATCCATCGTCTGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp GTGGTCTTCATGTCCGTCTGCAGTTTGTTGATAGTGTaGTCCTTCTCCTTGCATTGCTGCTCCAGCCTGAAG +
Preference number: 6 (lower is better)
Translates to: VVFMSVCSLLIV*SFSLHCCSSLK
Trigger: CTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCAACAAACTGCAGACGGACATGAAGACCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp GATTGCTTTGGGCTTTCTGAGGAACTCACCTTTATTTaGGAGATGGTGGGTGAATTGCTCAGCATGCGGTCC +
Preference number: 6 (lower is better)
Translates to: DCFGLSEELTFI*EMVGELLSMRS
Trigger: GGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCTCAGAAAGCCCAAAGCAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CAA 90 bp TCTGCCGATCCTTTCTGCTGTTCTCCTCTTCCAAGCGCCGAAGCTTaGTTCTCATCAGATCCACATCACTTTTCTGCATATGTAAGGACT +
Preference number: 6 (lower is better)
Translates to: SADPFCCSPLPSAEA*FSSDPHHFSAYVRT
Trigger: AGTCCTTACATATGCAGAAAAGTGATGTGGATCTGATGAGAACAAAGCTTCGGCGCTTGGAAGAGGAGAACAGCAGAAAGGATCGGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000142081.6
CDS GCA 72 bp ACCAGGGGATTCGGATTCACCAGCTCTGAAGTCGATTaGTTTGGGCTTTCTGAGGAACTCACTTTCTTTTCT +
Preference number: 6 (lower is better)
Translates to: TRGFGFTSSEVD*FGLSEELTFFS
Trigger: AGAAAAGAAAGTGAGTTCCTCAGAAAGCCCAAAGCAATCGACTTCAGAGCTGGTGAATCCGAATCCCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CCA 72 bp ATTGCTTTGGGCTTTCTGAGGAACTCACCTTTATTTTaGAGATGGTGGGTGAATTGCTCAGCATGCGGTCCA +
Preference number: 6 (lower is better)
Translates to: IALGFLRNSPLF*RWWVNCSACGP
Trigger: TGGACCGCATGCTGAGCAATTCACCCACCATCTCCAAAATAAAGGTGAGTTCCTCAGAAAGCCCAAAGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129704.2
CDS CAA 72 bp AGGTCACTTTTCTGGGTTTGGAGTAGTAGGGCGACTTaGGTGATGTGGAAGGAGGTTTGTGGAAACTTTTCC +
Preference number: 6 (lower is better)
Translates to: RSLFWVWSSRAT*VMWKEVCGNFS
Trigger: GGAAAAGTTTCCACAAACCTCCTTCCACATCACCAAAGTCGCCCTACTACTCCAAACCCAGAAAAGTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6
CDS CAA 72 bp TCCGTCTGCAGTTTGTTGATAGTGTTGTCCTTCTCCTaGCATTGCTGCTCCAGCCTGAAGATCCTTTGTTTG +
Preference number: 6 (lower is better)
Translates to: SVCSLLIVLSFS*HCCSSLKILCL
Trigger: CAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCAACAAACTGCAGACGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
CDS CAA 72 bp CCTTTCTGCTGTTCTCCTCTTCCAAGCGCCGAAGCTTaGTTCTCATCAGATCCACATCACTTTTCTGCATAT +
Preference number: 6 (lower is better)
Translates to: PFCCSPLPSAEA*FSSDPHHFSAY
Trigger: ATATGCAGAAAAGTGATGTGGATCTGATGAGAACAAAGCTTCGGCGCTTGGAAGAGGAGAACAGCAGAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000142081.6
CDS TCA 72 bp CACTTTTCTGGGTTTGGAGTAGTAGGGCGACTTTGGTaGTGTGGAAGGAGGTTTGTGGAAACTTTTCCTTTT +
Preference number: 6 (lower is better)
Translates to: HFSGFGVVGRLW*CGRRFVETFPF
Trigger: AAAAGGAAAAGTTTCCACAAACCTCCTTCCACATCACCAAAGTCGCCCTACTACTCCAAACCCAGAAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041783.14
ENSMUST00000077890.12
ENSMUST00000135028.5
ENSMUST00000142081.6