RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IPPK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021385

Ensembl transcript IDs: ENSMUST00000021817.10, ENSMUST00000220447.2, ENSMUST00000220856.2

Found 187 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCCCACTGGCCAAGCCGTTGGAAGGGAAGAAGAAGGGCTTCAGGTaGTGTGCAAGCTCCTTCAAGTCAGCCACAGGGCTCCGGGCATCA +
Preference number: 1 (lower is better)
Translates to: GPLAKPLEGKKKGFR*CASSFKSATGLRAS
Trigger: TGATGCCCGGAGCCCTGTGGCTGACTTGAAGGAGCTTGCACACCACCTGAAGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CCA 90 bp TGTAGGCTCCTGCTGAAAGGACTGGCTTCACAGACTCGTGGGCCCTaGAGCCCAAGCCTCAGGGCACCAGCTCGGGCTTTTTCTGAGCTG +
Preference number: 1 (lower is better)
Translates to: CRLLLKGLASQTRGP*SPSLRAPARAFSEL
Trigger: CAGCTCAGAAAAAGCCCGAGCTGGTGCCCTGAGGCTTGGGCTCCAGGGCCCACGAGTCTGTGAAGCCAGTCCTTTCAGCAGGAGCCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CCA 90 bp CACGGATCACAGCCTTCGTGCAGTGAGGCCCACTGGCCAAGCCGTTaGAAGGGAAGAAGAAGGGCTTCAGGTGGTGTGCAAGCTCCTTCA +
Preference number: 1 (lower is better)
Translates to: HGSQPSCSEAHWPSR*KGRRRASGGVQAPS
Trigger: TGAAGGAGCTTGCACACCACCTGAAGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTGGGCCTCACTGCACGAAGGCTGTGATCCGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR TCA 90 bp CTGGTGATAACATGCACCAGCTCACGGATCACAGCCTTCGTGCAGTaGGGCCCACTGGCCAAGCCGTTGGAAGGGAAGAAGAAGGGCTTC +
Preference number: 1 (lower is better)
Translates to: LVITCTSSRITAFVQ*GPLAKPLEGKKKGF
Trigger: GAAGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTGGGCCTCACTGCACGAAGGCTGTGATCCGTGAGCTGGTGCATGTTATCACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR GCA 90 bp TTGGAAGAACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACATTTaGACTCTAAGGAAACGGATGGCTTGCTGGGACACAGCCTCACGT +
Preference number: 1 (lower is better)
Translates to: LEEPPRMFAWGSRDI*TLRKRMACWDTASR
Trigger: ACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTTCTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR TCA 90 bp GCCCTAGACCCAAATACCCAGGATGCCTCAGAGCTAACCCAGGGATaGATGTGGCTTAGGAGGAAGGGAAACCTTGATCCTCAACCATCC +
Preference number: 1 (lower is better)
Translates to: ALDPNTQDASELTQG*MWLRRKGNLDPQPS
Trigger: GGATGGTTGAGGATCAAGGTTTCCCTTCCTCCTAAGCCACATTCATCCCTGGGTTAGCTCTGAGGCATCCTGGGTATTTGGGTCTAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CCA 90 bp TGGGGCTCAAGGGACATTTGCACTCTAAGGAAACGGATGGCTTGCTaGGACACAGCCTCACGTCCTACATTCCTCGTCCTAGAAGACTAT +
Preference number: 1 (lower is better)
Translates to: WGSRDICTLRKRMAC*DTASRPTFLVLEDY
Trigger: ATAGTCTTCTAGGACGAGGAATGTAGGACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CCA 90 bp CCAAGCAGAATTAGGAGTATGGTTGGAGGAGAGCCCTGTACATGTTaGCGGGGTGCTCCACCTGTGTTCTTTACTCCAGGAGACACTGTT +
Preference number: 1 (lower is better)
Translates to: PSRIRSMVGGEPCTC*RGAPPVFFTPGDTV
Trigger: AACAGTGTCTCCTGGAGTAAAGAACACAGGTGGAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATACTCCTAATTCTGCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR GCA 90 bp CTAAGGCCGCATTATCTCAGACACAGAGCTATATTGTTTGGTGAGTaGCTCAGTTACCTGATGTGCTGCCAAGATGAGGGGTTGGTGTGG +
Preference number: 1 (lower is better)
Translates to: LRPHYLRHRAILFGE*LSYLMCCQDEGLVW
Trigger: CCACACCAACCCCTCATCTTGGCAGCACATCAGGTAACTGAGGCACTCACCAAACAATATAGCTCTGTGTCTGAGATAATGCGGCCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 90 bp AACACACAAGAAGAAGCCACTTTCCTGAAGCCTTTGCAGGATGTGTaGAAGGCGGCATTTTCTCTGCCTTGGGTTACAGGTGACATTGCC +
Preference number: 1 (lower is better)
Translates to: NTQEEATFLKPLQDV*KAAFSLPWVTGDIA
Trigger: GGCAATGTCACCTGTAACCCAAGGCAGAGAAAATGCCGCCTTCCACACATCCTGCAAAGGCTTCAGGAAAGTGGCTTCTTCTTGTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR TCA 90 bp ATCTCAGACACAGAGCTATATTGTTTGGTGAGTGCCTCAGTTACCTaGTGTGCTGCCAAGATGAGGGGTTGGTGTGGGTATCCTGAACCA +
Preference number: 1 (lower is better)
Translates to: ISDTELYCLVSASVT*CAAKMRGWCGYPEP
Trigger: TGGTTCAGGATACCCACACCAACCCCTCATCTTGGCAGCACATCAGGTAACTGAGGCACTCACCAAACAATATAGCTCTGTGTCTGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR TCA 90 bp AGCACTGTTGCCTTTACTTGGAAACTTGAAGACACACCCACAGCCTaGGGGTGGTACATAACTATAATTCCAGCACACAAGAGCAACCAA +
Preference number: 1 (lower is better)
Translates to: STVAFTWKLEDTPTA*GWYITIIPAHKSNQ
Trigger: TTGGTTGCTCTTGTGTGCTGGAATTATAGTTATGTACCACCCTCAGGCTGTGGGTGTGTCTTCAAGTTTCCAAGTAAAGGCAACAGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 90 bp GCTGCACCTTTGTTAATGCAAAGGCCACTGTCCCATCATCCTCAGTaGACAGATCAAGCAGTTTCTGGTAAAATACTTCATCATAAGGCC +
Preference number: 1 (lower is better)
Translates to: AAPLLMQRPLSHHPQ*TDQAVSGKILHHKA
Trigger: GGCCTTATGATGAAGTATTTTACCAGAAACTGCTTGATCTGTCCACTGAGGATGATGGGACAGTGGCCTTTGCATTAACAAAGGTGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR TCA 90 bp AAACAGACCAGCATTCTAGAAATACAGGTTTCTGTGAAACTGCTCTaGGAGCCTGGGACCCAGCCATATCTTAGATCATTACTATGGCCT +
Preference number: 1 (lower is better)
Translates to: KQTSILEIQVSVKLL*EPGTQPYLRSLLWP
Trigger: AGGCCATAGTAATGATCTAAGATATGGCTGGGTCCCAGGCTCTCAGAGCAGTTTCACAGAAACCTGTATTTCTAGAATGCTGGTCTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR GCA 90 bp GTGGAGATAACAACTAGTCTCCCGCTGGCAAACACACAGGAACATTaGTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTC +
Preference number: 1 (lower is better)
Translates to: VEITTSLPLANTQEH*WAEEHSKYVDYEHF
Trigger: GAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGGGAGACTAGTTGTTATCTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 90 bp GAGATAACAACTAGTCTCCCGCTGGCAAACACACAGGAACATTGCTaGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCTCT +
Preference number: 1 (lower is better)
Translates to: EITTSLPLANTQEHC*AEEHSKYVDYEHFS
Trigger: AGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGGGAGACTAGTTGTTATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 90 bp ACTATAATTCCAGCACACAAGAGCAACCAAAGTTTAAAGCAGCCTTaGCTATATAGTGAGCCACTGTCTCAGAAAACAAAGGCTAGATTA +
Preference number: 1 (lower is better)
Translates to: TIIPAHKSNQSLKQP*LYSEPLSQKTKARL
Trigger: TAATCTAGCCTTTGTTTTCTGAGACAGTGGCTCACTATATAGCCAAGGCTGCTTTAAACTTTGGTTGCTCTTGTGTGCTGGAATTATAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR TCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAGTGGTGTCCATCCTaGCCTGAGTCCTGTGTTCCC +
Preference number: 2 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSEWCPS*PESCVP
Trigger: GGGAACACAGGACTCAGGTCAGGATGGACACCACTC...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CAA 90 bp AGGCCTTCGATGTCCAGCTGGTCCAACATCTGCACCTGGAGGGTTTaGTACAGAAGACAGCCCTTCGGTAACCCCGAGTGCTCTGAGGTG +
Preference number: 2 (lower is better)
Translates to: RPSMSSWSNICTWRV*YRRQPFGNPECSEV
Trigger: CACCTCAGAGCACTCGGGGTTACCGAAGGGCTGTCTTCTGTACAAAACCCTCCAGGTGCAGATGTTGGACCAGCTGGACATCGAAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTAAACGGATGGCTTGCTaGGACACAGCCTCACGTCCT +
Preference number: 2 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSKRMAC*DTASRP
Trigger: AGGACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTT...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CAA 90 bp CTTGGAAGAACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACATTaGCACTCTAAGGAAACGGATGGCTTGCTGGGACACAGCCTCACG +
Preference number: 2 (lower is better)
Translates to: LGRTTQDVCLGLKGH*HSKETDGLLGHSLT
Trigger: CGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTTCTTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACACCACCCAGGATGTTTaGCTGGGGCTCAAGGGACAT +
Preference number: 2 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYTTQDV*LGLKGH
Trigger: ATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGT...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp TGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACAGCTCTGCCTCTCCTGTGTTCCCTGCTaGTGCCCCAGTACAAAGCTA +
Preference number: 2 (lower is better)
Translates to: CQDTHAADLSSSELQLCLSCVPC*CPSTKL
Trigger: TAGCTTTGTACTGGGGCAGCAGCAGGGAACACAGGA...GAGGCAGAGCTGTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR TCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTTATGAGAACTGGACGTaGGCTCTGCTTGGAAGAACC +
Preference number: 2 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSYENWT*ALLGRT
Trigger: GGTTCTTCCAAGCAGAGCTCACGTCCAGTTCTCATA...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp TCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCTCTGAACTACAGCTCTaGCTCCAGCCTCTACAGCAG +
Preference number: 2 (lower is better)
Translates to: SKTPECQENSGLSGHPRSSELQL*LQPLQQ
Trigger: CTGCTGTAGAGGCTGGAGGCAGAGCTGTAGTTCAGA...GCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp ATTGCTCAACCCGTTTGTACAGAGGGTAGAGGCCTTCGATGTCCAGCTGGTCCAGGGCTTCAGGTGGTGTaGAAGCTCCTTCAAGTCAGC +
Preference number: 2 (lower is better)
Translates to: IAQPVCTEGRGLRCPAGPGLQVV*KLLQVS
Trigger: GCTGACTTGAAGGAGCTTGCACACCACCTGAAGCCC...TGGACCAGCTGGACATCGAAGGCCTCTACCCTCTGTACAAACGGGTTGAGCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR TCA 90 bp ATTGCTCAACCCGTTTGTACAGAGGGTAGAGGCCTTCGATGTCCAGCTGGTCCATTCCAGTTGCTACCTTaGGGTGCTGGTGCATGCAGT +
Preference number: 2 (lower is better)
Translates to: IAQPVCTEGRGLRCPAGPFQLLP*GAGACS
Trigger: ACTGCATGCACCAGCACCTCAAGGTAGCAACTGGAA...TGGACCAGCTGGACATCGAAGGCCTCTACCCTCTGTACAAACGGGTTGAGCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGGCTCAAGGGACATTTaGACTCTAAGGAAACGGATG +
Preference number: 2 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSGSRDI*TLRKRM
Trigger: CATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCC...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp CAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCAACCACCCAGGATGTTTaGCTGGGGCTCAAGGGACAT +
Preference number: 2 (lower is better)
Translates to: QPSKTPECQENSGLSGHPTTQDV*LGLKGH
Trigger: ATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGT...TGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CAA 90 bp AGCAAGCCCCGATACTCCTCTCGGTCTCCTACAGAAGTAGCACTGTaGCCTTTACTTGGAAACTTGAAGACACACCCACAGCCTGAGGGT +
Preference number: 2 (lower is better)
Translates to: SKPRYSSRSPTEVAL*PLLGNLKTHPQPEG
Trigger: ACCCTCAGGCTGTGGGTGTGTCTTCAAGTTTCCAAGTAAAGGCAACAGTGCTACTTCTGTAGGAGACCGAGAGGAGTATCGGGGCTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR TCA 90 bp CAGGCATCCCTGAGTCAAAACAAAACCATGACCTTCAAGCATGTGACTCAGGTGGTGTCCATCCTGACCTaGGTCCTGTGTTCCCTGCTG +
Preference number: 2 (lower is better)
Translates to: QASLSQNKTMTFKHVTQVVSILT*VLCSLL
Trigger: CAGCAGGGAACACAGGACTCAGGTCAGGATGGACAC...CACCTGAGTCACATGCTTGAAGGTCATGGTTTTGTTTTGACTCAGGGATGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR GCA 90 bp ACTTTCCTGAAGCCTTTGCAGGATGTGTGGAAGGCGGCATTTTCTCTGCCTTGGTCTGAACTACAGCTCTaGCTCCAGCCTCTACAGCAG +
Preference number: 2 (lower is better)
Translates to: TFLKPLQDVWKAAFSLPWSELQL*LQPLQQ
Trigger: CTGCTGTAGAGGCTGGAGGCAGAGCTGTAGTTCAGA...CCAAGGCAGAGAAAATGCCGCCTTCCACACATCCTGCAAAGGCTTCAGGAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR GCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACTTATTCTGTGTCTCCTaGAGCAGACTTCTGAGGGCA +
Preference number: 2 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYLFCVS*SRLLRA
Trigger: TGCCCTCAGAAGTCTGCTGCAGGAGACACAGAATAA...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CCA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACTGGCCAAGCCGTTaGAAGGGAAGAAGAAGGGCT +
Preference number: 2 (lower is better)
Translates to: DPQPSKTPECQENSGLSGHWPSR*KGRRRA
Trigger: AGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTG...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CAA 90 bp ATGTGTGGAAGGCGGCATTTTCTCTGCCTTGGGTTACAGGTGACATaGCCCCTTGGTCTTCAGTCTGTGCTTTCCACTGTGTGGCTATTG +
Preference number: 2 (lower is better)
Translates to: MCGRRHFLCLGLQVT*PLGLQSVLSTVWLL
Trigger: CAATAGCCACACAGTGGAAAGCACAGACTGAAGACCAAGGGGCAATGTCACCTGTAACCCAAGGCAGAGAAAATGCCGCCTTCCACACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR TCA 90 bp AGTTGCTACCTTGAGGTGCTGGTGCATGCAGTATCGGCACACCTTGTGCTTCATTATGAGAACTGGACGTaGGCTCTGCTTGGAAGAACC +
Preference number: 2 (lower is better)
Translates to: SCYLEVLVHAVSAHLVLHYENWT*ALLGRT
Trigger: GGTTCTTCCAAGCAGAGCTCACGTCCAGTTCTCATA...ATGAAGCACAAGGTGTGCCGATACTGCATGCACCAGCACCTCAAGGTAGCAACT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR TCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACGACAAAAACTCCCAATaGTTTCATAGCAGCCAGGCA +
Preference number: 2 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYDKNSQ*FHSSQA
Trigger: TGCCTGGCTGCTATGAAATCATTGGGAGTTTTTGTC...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp CAGGCATCCCTGAGTCAAAACAAAACCATGACCTTCAAGCATGTGACTCAGGTGACCACCCAGGATGTTTaGCTGGGGCTCAAGGGACAT +
Preference number: 2 (lower is better)
Translates to: QASLSQNKTMTFKHVTQVTTQDV*LGLKGH
Trigger: ATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGT...CACCTGAGTCACATGCTTGAAGGTCATGGTTTTGTTTTGACTCAGGGATGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR CCA 90 bp GGGTTTTGTACAGAAGACAGCCCTTCGGTAACCCCGAGTGCTCTGAGGTGTTTTAAGAAGGGCTTCAGGTaGTGTGCAAGCTCCTTCAAG +
Preference number: 2 (lower is better)
Translates to: GFCTEDSPSVTPSALRCFKKGFR*CASSFK
Trigger: CTTGAAGGAGCTTGCACACCACCTGAAGCCCTTCTT...AAAACACCTCAGAGCACTCGGGGTTACCGAAGGGCTGTCTTCTGTACAAAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp CAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCAGGCTCAAGGGACATTTaGACTCTAAGGAAACGGATG +
Preference number: 2 (lower is better)
Translates to: QPSKTPECQENSGLSGHPGSRDI*TLRKRM
Trigger: CATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCC...TGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp GGGTTTTGTACAGAAGACAGCCCTTCGGTAACCCCGAGTGCTCTGAGGTGTTTTCTTCTGAGGGCAAAGTaGATGCGCTGCTTATTTCCT +
Preference number: 2 (lower is better)
Translates to: GFCTEDSPSVTPSALRCFLLRAK*MRCLFP
Trigger: AGGAAATAAGCAGCGCATGCACTTTGCCCTCAGAAG...AAAACACCTCAGAGCACTCGGGGTTACCGAAGGGCTGTCTTCTGTACAAAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp CTCAGTGGACAGATCAAGCAGTTTCTGGTAAAATACTTCATCATAAGGCCCATCGGATCACAGCCTTCGTaGAGTGAGGCCCACTGGCCA +
Preference number: 2 (lower is better)
Translates to: LSGQIKQFLVKYFIIRPIGSQPS*SEAHWP
Trigger: TGGCCAGTGGGCCTCACTGCACGAAGGCTGTGATCC...GATGGGCCTTATGATGAAGTATTTTACCAGAAACTGCTTGATCTGTCCACTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CAA 90 bp TTGGCGGGGTGCTCCACCTGTGTTCTTTACTCCAGGAGACACTGTTaGTTTCCATCTACCTATCTATCCAAGACAGGGCCTCTTGCAAAA +
Preference number: 2 (lower is better)
Translates to: LAGCSTCVLYSRRHC*FPSTYLSKTGPLAK
Trigger: TTTTGCAAGAGGCCCTGTCTTGGATAGATAGGTAGATGGAAACAAACAGTGTCTCCTGGAGTAAAGAACACAGGTGGAGCACCCCGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 90 bp GAACTACCCAGGCTAAGGCCGCATTATCTCAGACACAGAGCTATATaGTTTGGTGAGTGCCTCAGTTACCTGATGTGCTGCCAAGATGAG +
Preference number: 2 (lower is better)
Translates to: ELPRLRPHYLRHRAI*FGECLSYLMCCQDE
Trigger: CTCATCTTGGCAGCACATCAGGTAACTGAGGCACTCACCAAACAATATAGCTCTGTGTCTGAGATAATGCGGCCTTAGCCTGGGTAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 90 bp AATGAGTGTGAAAGAGCTGTGTTCAGCGGTCAACCTCACATCAGGTaGGCCCAAGACAGCATGGGACACAGAAAAACCCAAAGCTATCCA +
Preference number: 2 (lower is better)
Translates to: NECERAVFSGQPHIR*AQDSMGHRKTQSYP
Trigger: TGGATAGCTTTGGGTTTTTCTGTGTCCCATGCTGTCTTGGGCCAACCTGATGTGAGGTTGACCGCTGAACACAGCTCTTTCACACTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 90 bp AGTAACCACCCAAACACACAAGAAGAAGCCACTTTCCTGAAGCCTTaGCAGGATGTGTGGAAGGCGGCATTTTCTCTGCCTTGGGTTACA +
Preference number: 2 (lower is better)
Translates to: SNHPNTQEEATFLKP*QDVWKAAFSLPWVT
Trigger: TGTAACCCAAGGCAGAGAAAATGCCGCCTTCCACACATCCTGCAAAGGCTTCAGGAAAGTGGCTTCTTCTTGTGTGTTTGGGTGGTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR TCA 90 bp CAGGCATCCCTGAGTCAAAACAAAACCATGACCTTCAAGCATGTGACTCAGGTGTATGAGAACTGGACGTaGGCTCTGCTTGGAAGAACC +
Preference number: 2 (lower is better)
Translates to: QASLSQNKTMTFKHVTQVYENWT*ALLGRT
Trigger: GGTTCTTCCAAGCAGAGCTCACGTCCAGTTCTCATA...CACCTGAGTCACATGCTTGAAGGTCATGGTTTTGTTTTGACTCAGGGATGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR TCA 90 bp GTATGGTTGGAGGAGAGCCCTGTACATGTTGGCGGGGTGCTCCACCTGTGTTCTATATGTGACTTGCATTaGACAAGTGACCAGTTAACA +
Preference number: 2 (lower is better)
Translates to: VWLEESPVHVGGVLHLCSICDLH*TSDQLT
Trigger: TGTTAACTGGTCACTTGTTCAATGCAAGTCACATAT...AGAACACAGGTGGAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR CCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGAAACGGATGGCTTGCTaGGACACAGCCTCACGTCCT +
Preference number: 2 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWKRMAC*DTASRP
Trigger: AGGACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTT...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CAA 90 bp CCAGTTGCTACCTTGAGGTGCTGGTGCATGCAGTATCGGCACACCTaGTGCTTCATCTCGTGGGTAACATCATTTGAGAAAGGAATAAAC +
Preference number: 2 (lower is better)
Translates to: PVATLRCWCMQYRHT*CFISWVTSFEKGIN
Trigger: GTTTATTCCTTTCTCAAATGATGTTACCCACGAGATGAAGCACAAGGTGTGCCGATACTGCATGCACCAGCACCTCAAGGTAGCAACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR TCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACATATGTGACTTGCATTaGACAAGTGACCAGTTAACA +
Preference number: 2 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYICDLH*TSDQLT
Trigger: TGTTAACTGGTCACTTGTTCAATGCAAGTCACATAT...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR GCA 90 bp ACTTTAATCAGTAACCACCCAAACACACAAGAAGAAGCCACTTTCCTGAAGCCTAGGAAACGGATGGCTTaGTGGGACACAGCCTCACGT +
Preference number: 2 (lower is better)
Translates to: TLISNHPNTQEEATFLKPRKRMA*WDTASR
Trigger: ACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCT...AGGCTTCAGGAAAGTGGCTTCTTCTTGTGTGTTTGGGTGGTTACTGATTAAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR GCA 90 bp CTCAGTGGACAGATCAAGCAGTTTCTGGTAAAATACTTCATCATAAGGCCCATCAGGAAACGGATGGCTTaGTGGGACACAGCCTCACGT +
Preference number: 2 (lower is better)
Translates to: LSGQIKQFLVKYFIIRPIRKRMA*WDTASR
Trigger: ACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCT...GATGGGCCTTATGATGAAGTATTTTACCAGAAACTGCTTGATCTGTCCACTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CCA 90 bp TTACAGGTGACATTGCCCCTTGGTCTTCAGTCTGTGCTTTCCACTGTGTGGCTAAGTTTAAAGCAGCCTTaGCTATATAGTGAGCCACTG +
Preference number: 2 (lower is better)
Translates to: LQVTLPLGLQSVLSTVWLSLKQP*LYSEPL
Trigger: CAGTGGCTCACTATATAGCCAAGGCTGCTTTAAACT...TAGCCACACAGTGGAAAGCACAGACTGAAGACCAAGGGGCAATGTCACCTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR GCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGGGCTCAAGGGACATTTaGACTCTAAGGAAACGGATG +
Preference number: 2 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWGSRDI*TLRKRM
Trigger: CATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCC...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR CCA 90 bp GAAAATCCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCAAACGGATGGCTTGCTaGGACACAGCCTCACGTCCT +
Preference number: 2 (lower is better)
Translates to: ENPNRKLLVTIQVSVSMVKRMAC*DTASRP
Trigger: AGGACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTT...GACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGGATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR CCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGGTCACAACGGGACTCTaGTCTTTCACACTGTATCTT +
Preference number: 2 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWVTTGL*SFTLYL
Trigger: AAGATACAGTGTGAAAGACCAGAGTCCCGTTGTGAC...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CCA 90 bp ACTTTAATCAGTAACCACCCAAACACACAAGAAGAAGCCACTTTCCTGAAGCCTCCAAAGCTATCCATCTaGTCTGCCCAGCAGAAATCT +
Preference number: 2 (lower is better)
Translates to: TLISNHPNTQEEATFLKPPKLSI*SAQQKS
Trigger: AGATTTCTGCTGGGCAGACCAGATGGATAGCTTTGG...AGGCTTCAGGAAAGTGGCTTCTTCTTGTGTGTTTGGGTGGTTACTGATTAAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR TCA 90 bp TGTTCCAAGAATGGTTGTCCATTCTCAAATGAGTGTGAAAGAGCTGTGTTCAGCGACAAAAACTCCCAATaGTTTCATAGCAGCCAGGCA +
Preference number: 2 (lower is better)
Translates to: CSKNGCPFSNECERAVFSDKNSQ*FHSSQA
Trigger: TGCCTGGCTGCTATGAAATCATTGGGAGTTTTTGTC...GCTGAACACAGCTCTTTCACACTCATTTGAGAATGGACAACCATTCTTGGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR CCA 90 bp TGTTCCAAGAATGGTTGTCCATTCTCAAATGAGTGTGAAAGAGCTGTGTTCAGCACTGTTGCCTTTACTTaGAAACTTGAAGACACACCC +
Preference number: 2 (lower is better)
Translates to: CSKNGCPFSNECERAVFSTVAFT*KLEDTP
Trigger: GGGTGTGTCTTCAAGTTTCCAAGTAAAGGCAACAGT...GCTGAACACAGCTCTTTCACACTCATTTGAGAATGGACAACCATTCTTGGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR GCA 90 bp TGTTCCAAGAATGGTTGTCCATTCTCAAATGAGTGTGAAAGAGCTGTGTTCAGCGGATATAGGCACATATaGTTGTTTGCATACACCAGT +
Preference number: 2 (lower is better)
Translates to: CSKNGCPFSNECERAVFSGYRHI*LFAYTS
Trigger: ACTGGTGTATGCAAACAAGCATATGTGCCTATATCC...GCTGAACACAGCTCTTTCACACTCATTTGAGAATGGACAACCATTCTTGGAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 90 bp CAAACACACAGGAACATTGCTGGGCTGAGGAACATTCAAAATATGTaGACTATGAGCATTTCTCTTTTCCAATTAGAAACCATATCCTTC +
Preference number: 2 (lower is better)
Translates to: QTHRNIAGLRNIQNM*TMSISLFQLETISF
Trigger: GAAGGATATGGTTTCTAATTGGAAAAGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 90 bp GACACTGTTTGTTTCCATCTACCTATCTATCCAAGACAGGGCCTCTaGCAAAATTATAATTCTCTAAAACAGACCAGCATTCTAGAAATA +
Preference number: 2 (lower is better)
Translates to: DTVCFHLPIYPRQGL*QNYNSLKQTSILEI
Trigger: TATTTCTAGAATGCTGGTCTGTTTTAGAGAATTATAATTTTGCAAGAGGCCCTGTCTTGGATAGATAGGTAGATGGAAACAAACAGTGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp CTGCTGAAAGGACTGGCTTCACAGACTCGTGGGCCCTaGAGCCCAAGCCTCAGGGCACCAGCTCGGGCTTTT +
Preference number: 3 (lower is better)
Translates to: LLKGLASQTRGP*SPSLRAPARAF
Trigger: AAAAGCCCGAGCTGGTGCCCTGAGGCTTGGGCTCCAGGGCCCACGAGTCTGTGAAGCCAGTCCTTTCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp GTGTTCCCTGCTGCTGCCCCAGTACAAAGCTATGGGCTTCGGTACCTCCACAGGCAGTATCGGCACACCTaGTGCTTCATCTCGTGGGTA +
Preference number: 3 (lower is better)
Translates to: VFPAAAPVQSYGLRYLHRQYRHT*CFISWV
Trigger: TACCCACGAGATGAAGCACAAGGTGTGCCGATACTG...CCTGTGGAGGTACCGAAGCCCATAGCTTTGTACTGGGGCAGCAGCAGGGAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp ATTGCTCAACCCGTTTGTACAGAGGGTAGAGGCCTTCGATGTCCAGCTGGTCCAAACCACCCAGGATGTTaGCCTGGGGCTCAAGGGACA +
Preference number: 3 (lower is better)
Translates to: IAQPVCTEGRGLRCPAGPNHPGC*PGAQGT
Trigger: TGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTT...TGGACCAGCTGGACATCGAAGGCCTCTACCCTCTGTACAAACGGGTTGAGCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR TCA 72 bp GTCCAATACAGACACAGAGAAGGCCAGCCGGGATCTTaGCGAAGGAATAACAGGCCTCTGGTCAGAGCTGGT +
Preference number: 3 (lower is better)
Translates to: VQYRHREGQPGS*RRNNRPLVRAG
Trigger: ACCAGCTCTGACCAGAGGCCTGTTATTCCTTCGTCAAGATCCCGGCTGGCCTTCTCTGTGTCTGTATTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR GCA 72 bp TATGGTTGGAGGAGAGCCCTGTACATGTTGGCGGGGTaGTCCACCTGTGTTCTTTACTCCAGGAGACACTGT +
Preference number: 3 (lower is better)
Translates to: YGWRRALYMLAG*STCVLYSRRHC
Trigger: ACAGTGTCTCCTGGAGTAAAGAACACAGGTGGAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp AGGCCTTCGATGTCCAGCTGGTCCAACATCTGCACCTaGAGGGTTTTGTACAGAAGACAGCCCTTCGGTAAC +
Preference number: 3 (lower is better)
Translates to: RPSMSSWSNICT*RVLYRRQPFGN
Trigger: GTTACCGAAGGGCTGTCTTCTGTACAAAACCCTCCAGGTGCAGATGTTGGACCAGCTGGACATCGAAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp GTATGGTTGGAGGAGAGCCCTGTACATGTTGGCGGGGTGCTCCACCTGTGTTCTTTTCAACTCCTTGTCTaGGAGAGGCAGTCTAACCTC +
Preference number: 3 (lower is better)
Translates to: VWLEESPVHVGGVLHLCSFQLLV*ERQSNL
Trigger: GAGGTTAGACTGCCTCTCCAAGACAAGGAGTTGAAA...AGAACACAGGTGGAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR GCA 72 bp TCAAGGGACATTTGCACTCTAAGGAAACGGATGGCTTaGTGGGACACAGCCTCACGTCCTACATTCCTCGTC +
Preference number: 3 (lower is better)
Translates to: SRDICTLRKRMA*WDTASRPTFLV
Trigger: GACGAGGAATGTAGGACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCTTAGAGTGCAAATGTCCCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR GCA 72 bp GGAAACCTTGATCCTCAACCATCCAAGACACCAGAATaGCAAGAAAACTCTGGGCTGTCAGGACACCCACGC +
Preference number: 3 (lower is better)
Translates to: GNLDPQPSKTPE*QENSGLSGHPR
Trigger: GCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATCAAGGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR GCA 72 bp AGCCTTTGCAGGATGTGTGGAAGGCGGCATTTTCTCTaGCTTGGGTTACAGGTGACATTGCCCCTTGGTCTT +
Preference number: 3 (lower is better)
Translates to: SLCRMCGRRHFL*LGLQVTLPLGL
Trigger: AAGACCAAGGGGCAATGTCACCTGTAACCCAAGGCAGAGAAAATGCCGCCTTCCACACATCCTGCAAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp AGGGACATTTGCACTCTAAGGAAACGGATGGCTTGCTaGGACACAGCCTCACGTCCTACATTCCTCGTCCTA +
Preference number: 3 (lower is better)
Translates to: RDICTLRKRMAC*DTASRPTFLVL
Trigger: TAGGACGAGGAATGTAGGACGTGAGGCTGTGTCCCAGCAAGCCATCCGTTTCCTTAGAGTGCAAATGTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CCA 72 bp TCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTaGGCTGTCAGGACACCCACGCAGCAGACCTTAGCA +
Preference number: 3 (lower is better)
Translates to: STIQDTRMPRKL*AVRTPTQQTLA
Trigger: TGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CCA 72 bp ATTAGGAGTATGGTTGGAGGAGAGCCCTGTACATGTTaGCGGGGTGCTCCACCTGTGTTCTTTACTCCAGGA +
Preference number: 3 (lower is better)
Translates to: IRSMVGGEPCTC*RGAPPVFFTPG
Trigger: TCCTGGAGTAAAGAACACAGGTGGAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATACTCCTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp GCGGTCAACCTCACATCAGGTTGGCCCAAGACAGCATaGGACACAGAAAAACCCAAAGCTATCCATCTGGTC +
Preference number: 3 (lower is better)
Translates to: AVNLTSGWPKTA*DTEKPKAIHLV
Trigger: GACCAGATGGATAGCTTTGGGTTTTTCTGTGTCCCATGCTGTCTTGGGCCAACCTGATGTGAGGTTGACCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR CAA 90 bp TCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCTTTCAACTCCTTGTCTaGGAGAGGCAGTCTAACCTC +
Preference number: 3 (lower is better)
Translates to: SKTPECQENSGLSGHPRSFQLLV*ERQSNL
Trigger: GAGGTTAGACTGCCTCTCCAAGACAAGGAGTTGAAA...GCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp GGTGACCCCGTAGAATTCTCAGTGCCAGCTAGGAGCCTTCTATCTAGCCCTGATGGGCTCAAGGGACATTaGCACTCTAAGGAAACGGAT +
Preference number: 3 (lower is better)
Translates to: GDPVEFSVPARSLLSSPDGLKGH*HSKETD
Trigger: ATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCCC...ATCAGGGCTAGATAGAAGGCTCCTAGCTGGCACTGAGAATTCTACGGGGTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp CAGGCATCCCTGAGTCAAAACAAAACCATGACCTTCAAGCATGTGACTCAGGTGGGACGTGAGCTCTGCTaGGAAGAACCACCCAGGATG +
Preference number: 3 (lower is better)
Translates to: QASLSQNKTMTFKHVTQVGRELC*EEPPRM
Trigger: CATCCTGGGTGGTTCTTCCAAGCAGAGCTCACGTCC...CACCTGAGTCACATGCTTGAAGGTCATGGTTTTGTTTTGACTCAGGGATGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR CAA 90 bp ATTGCTCAACCCGTTTGTACAGAGGGTAGAGGCCTTCGATGTCCAGCTGGTCCATTTCAACTCCTTGTCTaGGAGAGGCAGTCTAACCTC +
Preference number: 3 (lower is better)
Translates to: IAQPVCTEGRGLRCPAGPFQLLV*ERQSNL
Trigger: GAGGTTAGACTGCCTCTCCAAGACAAGGAGTTGAAA...TGGACCAGCTGGACATCGAAGGCCTCTACCCTCTGTACAAACGGGTTGAGCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp GCTGCACCTTTGTTAATGCAAAGGCCACTGTCCCATCATCCTCAGTGGACAGATTTTCCAGTTGCTACCTaGAGGTGCTGGTGCATGCAG +
Preference number: 3 (lower is better)
Translates to: AAPLLMQRPLSHHPQWTDFPVAT*RCWCMQ
Trigger: CTGCATGCACCAGCACCTCAAGGTAGCAACTGGAAA...ATCTGTCCACTGAGGATGATGGGACAGTGGCCTTTGCATTAACAAAGGTGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR TCA 72 bp CCAAATACCCAGGATGCCTCAGAGCTAACCCAGGGATaGATGTGGCTTAGGAGGAAGGGAAACCTTGATCCT +
Preference number: 3 (lower is better)
Translates to: PNTQDASELTQG*MWLRRKGNLDP
Trigger: AGGATCAAGGTTTCCCTTCCTCCTAAGCCACATTCATCCCTGGGTTAGCTCTGAGGCATCCTGGGTATTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR GCA 72 bp TTCTTCCACTTTCCAGTTGCTACCTTGAGGTGCTGGTaGATGCAGTATCGGCACACCTTGTGCTTCATCTCG +
Preference number: 3 (lower is better)
Translates to: FFHFPVATLRCW*MQYRHTLCFIS
Trigger: CGAGATGAAGCACAAGGTGTGCCGATACTGCATGCACCAGCACCTCAAGGTAGCAACTGGAAAGTGGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR-3UTR CAA 90 bp GCTGCACCTTTGTTAATGCAAAGGCCACTGTCCCATCATCCTCAGTGGACAGATGGGCTCAAGGGACATTaGCACTCTAAGGAAACGGAT +
Preference number: 3 (lower is better)
Translates to: AAPLLMQRPLSHHPQWTDGLKGH*HSKETD
Trigger: ATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCCC...ATCTGTCCACTGAGGATGATGGGACAGTGGCCTTTGCATTAACAAAGGTGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CCA 72 bp AAAGAGCTGTGTTCAGCGGTCAACCTCACATCAGGTTaGCCCAAGACAGCATGGGACACAGAAAAACCCAAA +
Preference number: 3 (lower is better)
Translates to: KELCSAVNLTSG*PKTAWDTEKPK
Trigger: TTTGGGTTTTTCTGTGTCCCATGCTGTCTTGGGCCAACCTGATGTGAGGTTGACCGCTGAACACAGCTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR-3UTR CAA 90 bp CTCAGTGGACAGATCAAGCAGTTTCTGGTAAAATACTTCATCATAAGGCCCATCGGACGTGAGCTCTGCTaGGAAGAACCACCCAGGATG +
Preference number: 3 (lower is better)
Translates to: LSGQIKQFLVKYFIIRPIGRELC*EEPPRM
Trigger: CATCCTGGGTGGTTCTTCCAAGCAGAGCTCACGTCC...GATGGGCCTTATGATGAAGTATTTTACCAGAAACTGCTTGATCTGTCCACTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR TCA 72 bp ACAGAGCTATATTGTTTGGTGAGTGCCTCAGTTACCTaGTGTGCTGCCAAGATGAGGGGTTGGTGTGGGTAT +
Preference number: 3 (lower is better)
Translates to: TELYCLVSASVT*CAAKMRGWCGY
Trigger: ATACCCACACCAACCCCTCATCTTGGCAGCACATCAGGTAACTGAGGCACTCACCAAACAATATAGCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR TCA 72 bp GTAACCACCCAAACACACAAGAAGAAGCCACTTTCCTaGAGCCTTTGCAGGATGTGTGGAAGGCGGCATTTT +
Preference number: 3 (lower is better)
Translates to: VTTQTHKKKPLS*SLCRMCGRRHF
Trigger: AAAATGCCGCCTTCCACACATCCTGCAAAGGCTTCAGGAAAGTGGCTTCTTCTTGTGTGTTTGGGTGGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR GCA 72 bp TTGAGGTGCTGGTGCATGCAGTATCGGCACACCTTGTaGTTCATCTCGTGGGTAACATCATTTGAGAAAGGA +
Preference number: 3 (lower is better)
Translates to: LRCWCMQYRHTL*FISWVTSFEKG
Trigger: TCCTTTCTCAAATGATGTTACCCACGAGATGAAGCACAAGGTGTGCCGATACTGCATGCACCAGCACCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CCA 72 bp TTTTCTCTGCCTTGGGTTACAGGTGACATTGCCCCTTaGTCTTCAGTCTGTGCTTTCCACTGTGTGGCTATT +
Preference number: 3 (lower is better)
Translates to: FSLPWVTGDIAP*SSVCAFHCVAI
Trigger: AATAGCCACACAGTGGAAAGCACAGACTGAAGACCAAGGGGCAATGTCACCTGTAACCCAAGGCAGAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR TCA 72 bp ACTTCTGAGGGCAAAGTGCATGCGCTGCTTATTTCCTaGGTAGAGGTCGAGGGGACAGTATTTACTGATTTT +
Preference number: 3 (lower is better)
Translates to: TSEGKVHALLIS*VEVEGTVFTDF
Trigger: AAAATCAGTAAATACTGTCCCCTCGACCTCTACTCAGGAAATAAGCAGCGCATGCACTTTGCCCTCAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR TCA 72 bp GCCTTTACTTGGAAACTTGAAGACACACCCACAGCCTaGGGGTGGTACATAACTATAATTCCAGCACACAAG +
Preference number: 3 (lower is better)
Translates to: AFTWKLEDTPTA*GWYITIIPAHK
Trigger: CTTGTGTGCTGGAATTATAGTTATGTACCACCCTCAGGCTGTGGGTGTGTCTTCAAGTTTCCAAGTAAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR TCA 72 bp TCTCAGTTTCCGAAGCCTGCTAGGTGTACTTGGTATTaGAGCTGCTCTAGACAGCCTGATAAGATTGTTCAG +
Preference number: 3 (lower is better)
Translates to: SQFPKPARCTWY*SCSRQPDKIVQ
Trigger: CTGAACAATCTTATCAGGCTGTCTAGAGCAGCTTCAATACCAAGTACACCTAGCAGGCTTCGGAAACTGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp ACTAGTCTCCCGCTGGCAAACACACAGGAACATTGCTaGGCTGAGGAACATTCAAAATATGTTGACTATGAG +
Preference number: 3 (lower is better)
Translates to: TSLPLANTQEHC*AEEHSKYVDYE
Trigger: CTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGGGAGACTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR GCA 72 bp ACAACTAGTCTCCCGCTGGCAAACACACAGGAACATTaGTGGGCTGAGGAACATTCAAAATATGTTGACTAT +
Preference number: 3 (lower is better)
Translates to: TTSLPLANTQEH*WAEEHSKYVDY
Trigger: ATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGGGAGACTAGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp GAGCCTGGGACCCAGCCATATCTTAGATCATTACTATaGCCTCAGACAACCAAAGACACACACAAACATATA +
Preference number: 3 (lower is better)
Translates to: EPGTQPYLRSLL*PQTTKDTHKHI
Trigger: TATATGTTTGTGTGTGTCTTTGGTTGTCTGAGGCCATAGTAATGATCTAAGATATGGCTGGGTCCCAGGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CCA 72 bp TTGTTAATGCAAAGGCCACTGTCCCATCATCCTCAGTaGACAGATCAAGCAGTTTCTGGTAAAATACTTCAT +
Preference number: 3 (lower is better)
Translates to: LLMQRPLSHHPQ*TDQAVSGKILH
Trigger: ATGAAGTATTTTACCAGAAACTGCTTGATCTGTCCACTGAGGATGATGGGACAGTGGCCTTTGCATTAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS-3UTR GCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTAACTTTCCCCTGTGCTaGCCAGGCCCTGGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSNFPLC*PGPGPG
Trigger: GCCTGGACCAGGGCCTGGGCAGCACAGGGGAAAGTT...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS-3UTR CCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACCAGACTCGTGGGCCCTaGAGCCCAAGCCTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYQTRGP*SPSLRA
Trigger: TGCCCTGAGGCTTGGGCTCCAGGGCCCACGAGTCTG...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp GTGTTCCCTGCTGCTGCCCCAGTACAAAGCTATGGGCTTCGGTACCTCCACAGGAGCTCGGGCTTTTTCTaGGCTGCTCAGCAGCACCCT +
Preference number: 4 (lower is better)
Translates to: VFPAAAPVQSYGLRYLHRSSGFF*AAQQHP
Trigger: AGGGTGCTGCTGAGCAGCTCAGAAAAAGCCCGAGCT...CCTGTGGAGGTACCGAAGCCCATAGCTTTGTACTGGGGCAGCAGCAGGGAACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGAGCAGCGCCCCGTTCCTaGCAGCGCAGCAGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: DPQPSKTPECQENSGLSGAAPRS*QRSSKA
Trigger: TGCCTTGCTGCTGCGCTGTCAGGAACGGGGCGCTGC...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS-3UTR TCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTAGCTCGGGCTTTTTCTaGGCTGCTCAGCAGCACCCT +
Preference number: 4 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSSSGFF*AAQQHP
Trigger: AGGGTGCTGCTGAGCAGCTCAGAAAAAGCCCGAGCT...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp GTGTTCCCTGCTGCTGCCCCAGTACAAAGCTATGGGCTTCGGTACCTCCACAGGTTCCAGTTGCTACCTTaGGGTGCTGGTGCATGCAGT +
Preference number: 4 (lower is better)
Translates to: VFPAAAPVQSYGLRYLHRFQLLP*GAGACS
Trigger: ACTGCATGCACCAGCACCTCAAGGTAGCAACTGGAA...CCTGTGGAGGTACCGAAGCCCATAGCTTTGTACTGGGGCAGCAGCAGGGAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTACCTTGAGGTGCTGGTaGATGCAGTATCGGCACACC +
Preference number: 4 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSTLRCW*MQYRHT
Trigger: GGTGTGCCGATACTGCATGCACCAGCACCTCAAGGT...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp TGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACAGCTCTGCCTCGGAATAACAGGCCTCTaGTCAGAGCTGGTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: CQDTHAADLSSSELQLCLGITGL*SELVPC
Trigger: ACAGGGCACCAGCTCTGACCAGAGGCCTGTTATTCC...GAGGCAGAGCTGTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACACCTTGAGGTGCTGGTaGATGCAGTATCGGCACACC +
Preference number: 4 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYTLRCW*MQYRHT
Trigger: GGTGTGCCGATACTGCATGCACCAGCACCTCAAGGT...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACGGGCTTCAGGTGGTGTaGAAGCTCCTTCAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYGLQVV*KLLQVS
Trigger: GCTGACTTGAAGGAGCTTGCACACCACCTGAAGCCC...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCAGGATCACAGCCTTCGTaGAGTGAGGCCCACTGGCCA +
Preference number: 4 (lower is better)
Translates to: QPSKTPECQENSGLSGHPGSQPS*SEAHWP
Trigger: TGGCCAGTGGGCCTCACTGCACGAAGGCTGTGATCC...TGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACCACTGGCCAAGCCGTTaGAAGGGAAGAAGAAGGGCT +
Preference number: 4 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYHWPSR*KGRRRA
Trigger: AGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTG...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
3UTR CAA 72 bp ACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACATTaGCACTCTAAGGAAACGGATGGCTTGCTGGGACAC +
Preference number: 4 (lower is better)
Translates to: TTQDVCLGLKGH*HSKETDGLLGH
Trigger: GTGTCCCAGCAAGCCATCCGTTTCCTTAGAGTGCAAATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
ENSMUST00000220856.2
3UTR CAA 72 bp ATGTCCAGCTGGTCCAACATCTGCACCTGGAGGGTTTaGTACAGAAGACAGCCCTTCGGTAACCCCGAGTGC +
Preference number: 4 (lower is better)
Translates to: MSSWSNICTWRV*YRRQPFGNPEC
Trigger: GCACTCGGGGTTACCGAAGGGCTGTCTTCTGTACAAAACCCTCCAGGTGCAGATGTTGGACCAGCTGGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS-3UTR TCA 90 bp AAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACTTCCAGTTGCTACCTTaGGGTGCTGGTGCATGCAGT +
Preference number: 4 (lower is better)
Translates to: KLWAVRTPTQQTLAALNYFQLLP*GAGACS
Trigger: ACTGCATGCACCAGCACCTCAAGGTAGCAACTGGAA...GTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp CGTGAGCTCTGCTTGGAAGAACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACAGTCCTTGGCAGTCATaGCTACTCTGTATTGCTGCA +
Preference number: 4 (lower is better)
Translates to: RELCLEEPPRMFAWGSRDSPWQS*LLCIAA
Trigger: TGCAGCAATACAGAGTAGCCATGACTGCCAAGGACT...GTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTTCTTCCAAGCAGAGCTCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
3UTR CAA 72 bp GTGGGTATCCTGAACCAAGCAGAATTAGGAGTATGGTaGGAGGAGAGCCCTGTACATGTTGGCGGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: VGILNQAELGVW*EESPVHVGGVL
Trigger: GAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATACTCCTAATTCTGCTTGGTTCAGGATACCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp CGTGAGCTCTGCTTGGAAGAACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACCGACGTAACTCAGACTaGCAAGTAACAGTGGAAACT +
Preference number: 4 (lower is better)
Translates to: RELCLEEPPRMFAWGSRDRRNSD*QVTVET
Trigger: AGTTTCCACTGTTACTTGTCAGTCTGAGTTACGTCG...GTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTTCTTCCAAGCAGAGCTCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS-3UTR GCA 90 bp GGTGACCCCGTAGAATTCTCAGTGCCAGCTAGGAGCCTTCTATCTAGCCCTGATGTTGCTACCTTGAGGTaGTGGTGCATGCAGTATCGG +
Preference number: 4 (lower is better)
Translates to: GDPVEFSVPARSLLSSPDVATLR*WCMQYR
Trigger: CCGATACTGCATGCACCAGCACCTCAAGGTAGCAAC...ATCAGGGCTAGATAGAAGGCTCCTAGCTGGCACTGAGAATTCTACGGGGTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp TCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGCTGGTCCAACATCTaGACCTGGAGGGTTTTGTAC +
Preference number: 4 (lower is better)
Translates to: SKTPECQENSGLSGHPRSSWSNI*TWRVLY
Trigger: GTACAAAACCCTCCAGGTGCAGATGTTGGACCAGCT...GCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CCAGGAGACACTGTTTGTTTCCATCTACCTATCTATCCAAGACAGGGCCTCTTGAGAACTACACAGCGCTaGGCGTGGGCCACCACAAGG +
Preference number: 4 (lower is better)
Translates to: PGDTVCFHLPIYPRQGLLRTTQR*AWATTR
Trigger: CCTTGTGGTGGCCCACGCGCAGCGCTGTGTAGTTCT...CAAGAGGCCCTGTCTTGGATAGATAGGTAGATGGAAACAAACAGTGTCTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp CAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCAGCTACCTTGAGGTGCTaGTGCATGCAGTATCGGCAC +
Preference number: 4 (lower is better)
Translates to: QPSKTPECQENSGLSGHPATLRC*CMQYRH
Trigger: GTGCCGATACTGCATGCACCAGCACCTCAAGGTAGC...TGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
3UTR CAA 72 bp AGGCGGCATTTTCTCTGCCTTGGGTTACAGGTGACATaGCCCCTTGGTCTTCAGTCTGTGCTTTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: RRHFLCLGLQVT*PLGLQSVLSTV
Trigger: CACAGTGGAAAGCACAGACTGAAGACCAAGGGGCAATGTCACCTGTAACCCAAGGCAGAGAAAATGCCGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGAGGGCTTCAGGTGGTGTaGAAGCTCCTTCAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: DPQPSKTPECQENSGLSGGLQVV*KLLQVS
Trigger: GCTGACTTGAAGGAGCTTGCACACCACCTGAAGCCC...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCATCTGGTCAGAGCTGGTaGCCTGTAGACAAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: QPSKTPECQENSGLSGHPSGQSW*PVDKGK
Trigger: TTTCCCCTTGTCTACAGGGCACCAGCTCTGACCAGA...TGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp GGTGACCCCGTAGAATTCTCAGTGCCAGCTAGGAGCCTTCTATCTAGCCCTGATAAGAAGGGCTTCAGGTaGTGTGCAAGCTCCTTCAAG +
Preference number: 4 (lower is better)
Translates to: GDPVEFSVPARSLLSSPDKKGFR*CASSFK
Trigger: CTTGAAGGAGCTTGCACACCACCTGAAGCCCTTCTT...ATCAGGGCTAGATAGAAGGCTCCTAGCTGGCACTGAGAATTCTACGGGGTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp CTTGTCTTGGAGAGGCAGTCTAACCTCAGCAGACCCGGGTTAAAAGCAAAGACACACTGGCCAAGCCGTTaGAAGGGAAGAAGAAGGGCT +
Preference number: 4 (lower is better)
Translates to: LVLERQSNLSRPGLKAKTHWPSR*KGRRRA
Trigger: AGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTG...TGTCTTTGCTTTTAACCCGGGTCTGCTGAGGTTAGACTGCCTCTCCAAGACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGAGGAATAACAGGCCTCTaGTCAGAGCTGGTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: DPQPSKTPECQENSGLSGGITGL*SELVPC
Trigger: ACAGGGCACCAGCTCTGACCAGAGGCCTGTTATTCC...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CAGCAAGCCCCGATACTCCTCTCGGTCTCCTACAGAAGTAGCACTGTTGCCTTTTTATTCTGTGTCTCCTaGAGCAGACTTCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: QQAPILLSVSYRSSTVAFLFCVS*SRLLRA
Trigger: TGCCCTCAGAAGTCTGCTGCAGGAGACACAGAATAA...AAAGGCAACAGTGCTACTTCTGTAGGAGACCGAGAGGAGTATCGGGGCTTGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp AAGGGAAACCTTGATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGATCACAGCCTTCGTaGAGTGAGGCCCACTGGCCA +
Preference number: 4 (lower is better)
Translates to: KGNLDPQPSKTPECQENSGSQPS*SEAHWP
Trigger: TGGCCAGTGGGCCTCACTGCACGAAGGCTGTGATCC...AGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATCAAGGTTTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp GTGTTCCCTGCTGCTGCCCCAGTACAAAGCTATGGGCTTCGGTACCTCCACAGGATGGCTACTCTGTATTaGTGCACCTTTGTTAATGCA +
Preference number: 4 (lower is better)
Translates to: VFPAAAPVQSYGLRYLHRMATLY*CTFVNA
Trigger: TGCATTAACAAAGGTGCAGCAATACAGAGTAGCCAT...CCTGTGGAGGTACCGAAGCCCATAGCTTTGTACTGGGGCAGCAGCAGGGAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp AAGGGAAACCTTGATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTAACTACACAGCGCTGTaGCAGCGCCCCGTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: KGNLDPQPSKTPECQENSNYTAL*QRPVPD
Trigger: GTCAGGAACGGGGCGCTGCCACAGCGCTGTGTAGTT...AGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATCAAGGTTTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS-3UTR CCA 90 bp AATCGAACGATCCAAATGTACAAGTGTCTGTCTTTACCTGAGTGTTCAAGAGCTCAGACTCGTGGGCCCTaGAGCCCAAGCCTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: NRTIQMYKCLSLPECSRAQTRGP*SPSLRA
Trigger: TGCCCTGAGGCTTGGGCTCCAGGGCCCACGAGTCTG...AGCTCTTGAACACTCAGGTAAAGACAGACACTTGTACATTTGGATCGTTCGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp GCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTCTGAAGTATCTCTTCTaGGGTCTTCTTCTTATTTGG +
Preference number: 4 (lower is better)
Translates to: AKKTLGCQDTHAADLSSSLKYLF*GLLLIW
Trigger: CCAAATAAGAAGAAGACCTCAGAAGAGATACTTCAG...AGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp TGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACAGCTCTGCCTCGGCATGCACAGTCTTTaGGTAATAGTTGACTATCTT +
Preference number: 4 (lower is better)
Translates to: CQDTHAADLSSSELQLCLGMHSL*VIVDYL
Trigger: AAGATAGTCAACTATTACTCAAAGACTGTGCATGCC...GAGGCAGAGCTGTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCATTATTCTGTGTCTCCTaGAGCAGACTTCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: QPSKTPECQENSGLSGHPLFCVS*SRLLRA
Trigger: TGCCCTCAGAAGTCTGCTGCAGGAGACACAGAATAA...TGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGAAGAACACCAGCTCTGTaGTTTCTCGAGGCTGAACTC +
Preference number: 4 (lower is better)
Translates to: DPQPSKTPECQENSGLSGRTPAL*FLEAEL
Trigger: GAGTTCAGCCTCGAGAAACCACAGAGCTGGTGTTCT...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
3UTR CAA 72 bp CCAAACACACAAGAAGAAGCCACTTTCCTGAAGCCTTaGCAGGATGTGTGGAAGGCGGCATTTTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: PNTQEEATFLKP*QDVWKAAFSLP
Trigger: AGGCAGAGAAAATGCCGCCTTCCACACATCCTGCAAAGGCTTCAGGAAAGTGGCTTCTTCTTGTGTGTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp TCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCCTGAAGTATCTCTTCTaGGGTCTTCTTCTTATTTGG +
Preference number: 4 (lower is better)
Translates to: SKTPECQENSGLSGHPRSLKYLF*GLLLIW
Trigger: CCAAATAAGAAGAAGACCTCAGAAGAGATACTTCAG...GCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp GCTGCACCTTTGTTAATGCAAAGGCCACTGTCCCATCATCCTCAGTGGACAGATAGAACTACACAGCGCTaGGAATGGACAAACCGCAAA +
Preference number: 4 (lower is better)
Translates to: AAPLLMQRPLSHHPQWTDRTTQR*EWTNRK
Trigger: TTTGCGGTTTGTCCATTCTCAGCGCTGTGTAGTTCT...ATCTGTCCACTGAGGATGATGGGACAGTGGCCTTTGCATTAACAAAGGTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS-3UTR GCA 90 bp TCACGTCCTACATTCCTCGTCCTAGAAGACTATAGGGCTTTCAACTCCTTGTCTAATCGGCCGGTGCTCTaGAAAGTGGAAGGTCTGAAG +
Preference number: 4 (lower is better)
Translates to: SRPTFLVLEDYRAFNSLSNRPVL*KVEGLK
Trigger: CTTCAGACCTTCCACTTTGCAGAGCACCGGCCGATT...AGACAAGGAGTTGAAAGCCCTATAGTCTTCTAGGACGAGGAATGTAGGACGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CGCTGGCAAACACACAGGAACATTGCTGGGCTGAGGAACATTCAAAATATGTTGGTTGCTACCTTGAGGTaGTGGTGCATGCAGTATCGG +
Preference number: 4 (lower is better)
Translates to: RWQTHRNIAGLRNIQNMLVATLR*WCMQYR
Trigger: CCGATACTGCATGCACCAGCACCTCAAGGTAGCAAC...CAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGCCTTCGATGTCCAGCTaGTCCAACATCTGCACCTGG +
Preference number: 4 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWPSMSS*SNICTW
Trigger: CCAGGTGCAGATGTTGGACCAGCTGGACATCGAAGG...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp AAGGGAAACCTTGATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTCCTTCGATGTCCAGCTaGTCCAACATCTGCACCTGG +
Preference number: 4 (lower is better)
Translates to: KGNLDPQPSKTPECQENSPSMSS*SNICTW
Trigger: CCAGGTGCAGATGTTGGACCAGCTGGACATCGAAGG...AGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATCAAGGTTTCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp TTACAGGTGACATTGCCCCTTGGTCTTCAGTCTGTGCTTTCCACTGTGTGGCTAAGTCCTTGGCAGTCATaGCTACTCTGTATTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LQVTLPLGLQSVLSTVWLSPWQS*LLCIAA
Trigger: TGCAGCAATACAGAGTAGCCATGACTGCCAAGGACT...TAGCCACACAGTGGAAAGCACAGACTGAAGACCAAGGGGCAATGTCACCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 72 bp ACCTTGAGGTGCTGGTGCATGCAGTATCGGCACACCTaGTGCTTCATCTCGTGGGTAACATCATTTGAGAAA +
Preference number: 4 (lower is better)
Translates to: TLRCWCMQYRHT*CFISWVTSFEK
Trigger: TTTCTCAAATGATGTTACCCACGAGATGAAGCACAAGGTGTGCCGATACTGCATGCACCAGCACCTCAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
3UTR CAA 72 bp AGGCTAAGGCCGCATTATCTCAGACACAGAGCTATATaGTTTGGTGAGTGCCTCAGTTACCTGATGTGCTGC +
Preference number: 4 (lower is better)
Translates to: RLRPHYLRHRAI*FGECLSYLMCC
Trigger: GCAGCACATCAGGTAACTGAGGCACTCACCAAACAATATAGCTCTGTGTCTGAGATAATGCGGCCTTAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 72 bp CGATACTCCTCTCGGTCTCCTACAGAAGTAGCACTGTaGCCTTTACTTGGAAACTTGAAGACACACCCACAG +
Preference number: 4 (lower is better)
Translates to: RYSSRSPTEVAL*PLLGNLKTHPQ
Trigger: CTGTGGGTGTGTCTTCAAGTTTCCAAGTAAAGGCAACAGTGCTACTTCTGTAGGAGACCGAGAGGAGTATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR TCA 90 bp GGAAGAACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACATTTGCACTCTAAGGGCATGCACAGTCTTTaGGTAATAGTTGACTATCTT +
Preference number: 4 (lower is better)
Translates to: GRTTQDVCLGLKGHLHSKGMHSL*VIVDYL
Trigger: AAGATAGTCAACTATTACTCAAAGACTGTGCATGCC...CTTAGAGTGCAAATGTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp GGTGACCCCGTAGAATTCTCAGTGCCAGCTAGGAGCCTTCTATCTAGCCCTGATATGGCTACTCTGTATTaGTGCACCTTTGTTAATGCA +
Preference number: 4 (lower is better)
Translates to: GDPVEFSVPARSLLSSPDMATLY*CTFVNA
Trigger: TGCATTAACAAAGGTGCAGCAATACAGAGTAGCCAT...ATCAGGGCTAGATAGAAGGCTCCTAGCTGGCACTGAGAATTCTACGGGGTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGTCTGGTCAGAGCTGGTaGCCTGTAGACAAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWSGQSW*PVDKGK
Trigger: TTTCCCCTTGTCTACAGGGCACCAGCTCTGACCAGA...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGAGTCACAACGGGACTCTaGTCTTTCACACTGTATCTT +
Preference number: 4 (lower is better)
Translates to: DPQPSKTPECQENSGLSGVTTGL*SFTLYL
Trigger: AAGATACAGTGTGAAAGACCAGAGTCCCGTTGTGAC...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CAGGCATCCCTGAGTCAAAACAAAACCATGACCTTCAAGCATGTGACTCAGGTGAACTCCTCCAGGTATTaGTCAACCCGTTTGTACAGA +
Preference number: 4 (lower is better)
Translates to: QASLSQNKTMTFKHVTQVNSSRY*STRLYR
Trigger: TCTGTACAAACGGGTTGAGCAATACCTGGAGGAGTT...CACCTGAGTCACATGCTTGAAGGTCATGGTTTTGTTTTGACTCAGGGATGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp AAGGGAAACCTTGATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTAAGAAGGGCTTCAGGTaGTGTGCAAGCTCCTTCAAG +
Preference number: 4 (lower is better)
Translates to: KGNLDPQPSKTPECQENSKKGFR*CASSFK
Trigger: CTTGAAGGAGCTTGCACACCACCTGAAGCCCTTCTT...AGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATCAAGGTTTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
3UTR CAA 72 bp TGCTCCACCTGTGTTCTTTACTCCAGGAGACACTGTTaGTTTCCATCTACCTATCTATCCAAGACAGGGCCT +
Preference number: 4 (lower is better)
Translates to: CSTCVLYSRRHC*FPSTYLSKTGP
Trigger: AGGCCCTGTCTTGGATAGATAGGTAGATGGAAACAAACAGTGTCTCCTGGAGTAAAGAACACAGGTGGAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGCTTCTGAGGGCAAAGTaGATGCGCTGCTTATTTCCT +
Preference number: 4 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWLLRAK*MRCLFP
Trigger: AGGAAATAAGCAGCGCATGCACTTTGCCCTCAGAAG...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp TCACGTCCTACATTCCTCGTCCTAGAAGACTATAGGGCTTTCAACTCCTTGTCTTCCAACATCTGCACCTaGAGGGTTTTGTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: SRPTFLVLEDYRAFNSLSSNICT*RVLYRR
Trigger: TCTTCTGTACAAAACCCTCCAGGTGCAGATGTTGGA...AGACAAGGAGTTGAAAGCCCTATAGTCTTCTAGGACGAGGAATGTAGGACGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp GAAAATCCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCAATCGGCCGGTGCTCTaGAAAGTGGAAGGTCTGAAG +
Preference number: 4 (lower is better)
Translates to: ENPNRKLLVTIQVSVSMVNRPVL*KVEGLK
Trigger: CTTCAGACCTTCCACTTTGCAGAGCACCGGCCGATT...GACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGGATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp AATCGAACGATCCAAATGTACAAGTGTCTGTCTTTACCTGAGTGTTCAAGAGCTAGCTGGTCCAACATCTaGACCTGGAGGGTTTTGTAC +
Preference number: 4 (lower is better)
Translates to: NRTIQMYKCLSLPECSRASWSNI*TWRVLY
Trigger: GTACAAAACCCTCCAGGTGCAGATGTTGGACCAGCT...AGCTCTTGAACACTCAGGTAAAGACAGACACTTGTACATTTGGATCGTTCGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp CCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCTGGTGGTCCAACATCTGCACCTaGAGGGTTTTGTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: PNRKLLVTIQVSVSMVWWSNICT*RVLYRR
Trigger: TCTTCTGTACAAAACCCTCCAGGTGCAGATGTTGGA...CCACCAGACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CCA 90 bp AATCGAACGATCCAAATGTACAAGTGTCTGTCTTTACCTGAGTGTTCAAGAGCTGTCACAACGGGACTCTaGTCTTTCACACTGTATCTT +
Preference number: 4 (lower is better)
Translates to: NRTIQMYKCLSLPECSRAVTTGL*SFTLYL
Trigger: AAGATACAGTGTGAAAGACCAGAGTCCCGTTGTGAC...AGCTCTTGAACACTCAGGTAAAGACAGACACTTGTACATTTGGATCGTTCGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR GCA 90 bp GAAAATCCAAACCGTAAGCTACTCGTAACAATTCAAGTTTCTGTGTCAATGGTCAACTCCTCCAGGTATTaGTCAACCCGTTTGTACAGA +
Preference number: 4 (lower is better)
Translates to: ENPNRKLLVTIQVSVSMVNSSRY*STRLYR
Trigger: TCTGTACAAACGGGTTGAGCAATACCTGGAGGAGTT...GACCATTGACACAGAAACTTGAATTGTTACGAGTAGCTTACGGTTTGGATTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
3UTR CAA 72 bp TGTTTCCATCTACCTATCTATCCAAGACAGGGCCTCTaGCAAAATTATAATTCTCTAAAACAGACCAGCATT +
Preference number: 4 (lower is better)
Translates to: CFHLPIYPRQGL*QNYNSLKQTSI
Trigger: AATGCTGGTCTGTTTTAGAGAATTATAATTTTGCAAGAGGCCCTGTCTTGGATAGATAGGTAGATGGAAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
3UTR CAA 72 bp AGGAACATTGCTGGGCTGAGGAACATTCAAAATATGTaGACTATGAGCATTTCTCTTTTCCAATTAGAAACC +
Preference number: 4 (lower is better)
Translates to: RNIAGLRNIQNM*TMSISLFQLET
Trigger: GGTTTCTAATTGGAAAAGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS TCA 90 bp ACACCAGCTCTGTGGTTTCTCGAGGCTGAACTCCACTCGGTGGGCTaGCAGCACTCTGGGAACTTTCCCCTGTGCTGCCCAGGCCCTGGT +
Preference number: 5 (lower is better)
Translates to: TPALWFLEAELHSVG*QHSGNFPLCCPGPG
Trigger: ACCAGGGCCTGGGCAGCACAGGGGAAAGTTCCCAGAGTGCTGTCAGCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAGAGCTGGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS CCA 90 bp GCAGAACACCAGCTCTGTGGTTTCTCGAGGCTGAACTCCACTCGGTaGGCTGACAGCACTCTGGGAACTTTCCCCTGTGCTGCCCAGGCC +
Preference number: 5 (lower is better)
Translates to: AEHQLCGFSRLNSTR*ADSTLGTFPCAAQA
Trigger: GGCCTGGGCAGCACAGGGGAAAGTTCCCAGAGTGCTGTCAGCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAGAGCTGGTGTTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS TCA 90 bp AGCGCAGCAGCAAGGCAGAACACCAGCTCTGTGGTTTCTCGAGGCTaGACTCCACTCGGTGGGCTGACAGCACTCTGGGAACTTTCCCCT +
Preference number: 5 (lower is better)
Translates to: SAAARQNTSSVVSRG*TPLGGLTALWELSP
Trigger: AGGGGAAAGTTCCCAGAGTGCTGTCAGCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAGAGCTGGTGTTCTGCCTTGCTGCTGCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS TCA 90 bp TCAGAAAACGCAGAACTACACAGCGCTGTGGCAGCGCCCCGTTCCTaGCAGCGCAGCAGCAAGGCAGAACACCAGCTCTGTGGTTTCTCG +
Preference number: 5 (lower is better)
Translates to: SENAELHSAVAAPRS*QRSSKAEHQLCGFS
Trigger: CGAGAAACCACAGAGCTGGTGTTCTGCCTTGCTGCTGCGCTGTCAGGAACGGGGCGCTGCCACAGCGCTGTGTAGTTCTGCGTTTTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS-3UTR CAA 90 bp GGTGACCCCGTAGAATTCTCAGTGCCAGCTAGGAGCCTTCTATCTAGCCCTGATGCCTCTGGCCCACCGTaGCCTGACAGTAAGACGAGC +
Preference number: 5 (lower is better)
Translates to: GDPVEFSVPARSLLSSPDASGPP*PDSKTS
Trigger: GCTCGTCTTACTGTCAGGCAACGGTGGGCCAGAGGC...ATCAGGGCTAGATAGAAGGCTCCTAGCTGGCACTGAGAATTCTACGGGGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS GCA 90 bp GCAGAACTACACAGCGCTGCGCGTGGGCCACCACAAGGCTCTTGTTaGCTTCGCCATGGTAACTCCATTCATTCTCGTCCATTTTCCCCT +
Preference number: 5 (lower is better)
Translates to: AELHSAARGPPQGSC*LRHGNSIHSRPFSP
Trigger: AGGGGAAAATGGACGAGAATGAATGGAGTTACCATGGCGAAGGCAACAAGAGCCTTGTGGTGGCCCACGCGCAGCGCTGTGTAGTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR CAA 90 bp TGTCAGGACACCCACGCAGCAGACCTTAGCAGCTCTGAACTACAGCTCTGCCTCTTTCCAGTTGCTACCTaGAGGTGCTGGTGCATGCAG +
Preference number: 5 (lower is better)
Translates to: CQDTHAADLSSSELQLCLFPVAT*RCWCMQ
Trigger: CTGCATGCACCAGCACCTCAAGGTAGCAACTGGAAA...GAGGCAGAGCTGTAGTTCAGAGCTGCTAAGGTCTGCTGCGTGGGTGTCCTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CAA 90 bp GTATGGTTGGAGGAGAGCCCTGTACATGTTGGCGGGGTGCTCCACCTGTGTTCTTTTCCAGTTGCTACCTaGAGGTGCTGGTGCATGCAG +
Preference number: 5 (lower is better)
Translates to: VWLEESPVHVGGVLHLCSFPVAT*RCWCMQ
Trigger: CTGCATGCACCAGCACCTCAAGGTAGCAACTGGAAA...AGAACACAGGTGGAGCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS GCA 90 bp ACTTCTGGAGGTGTTGCTGCGCGTGGGCCACCACAAGGCTCTTGTTaGCTTCGCCATGGTAACTCCATTCATTCTCGTCCATTTTCCCCT +
Preference number: 5 (lower is better)
Translates to: TSGGVAARGPPQGSC*LRHGNSIHSRPFSP
Trigger: AGGGGAAAATGGACGAGAATGAATGGAGTTACCATGGCGAAGGCAACAAGAGCCTTGTGGTGGCCCACGCGCAGCAACACCTCCAGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS-3UTR CAA 90 bp TCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACACCCACGCAGCTGCACCTGGAGGGTTTaGTACAGAAGACAGCCCTTC +
Preference number: 5 (lower is better)
Translates to: SKTPECQENSGLSGHPRSCTWRV*YRRQPF
Trigger: GAAGGGCTGTCTTCTGTACAAAACCCTCCAGGTGCA...GCTGCGTGGGTGTCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CAA 90 bp CGTGAGCTCTGCTTGGAAGAACCACCCAGGATGTTTGCCTGGGGCTCAAGGGACTGTATTGCTGCACCTTaGTTAATGCAAAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: RELCLEEPPRMFAWGSRDCIAAP*LMQRPL
Trigger: CAGTGGCCTTTGCATTAACAAAGGTGCAGCAATACA...GTCCCTTGAGCCCCAGGCAAACATCCTGGGTGGTTCTTCCAAGCAGAGCTCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CAA 90 bp ACTTTCCTGAAGCCTTTGCAGGATGTGTGGAAGGCGGCATTTTCTCTGCCTTGGTGCACCTGGAGGGTTTaGTACAGAAGACAGCCCTTC +
Preference number: 5 (lower is better)
Translates to: TFLKPLQDVWKAAFSLPWCTWRV*YRRQPF
Trigger: GAAGGGCTGTCTTCTGTACAAAACCCTCCAGGTGCA...CCAAGGCAGAGAAAATGCCGCCTTCCACACATCCTGCAAAGGCTTCAGGAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS-3UTR CAA 90 bp GATCCTCAACCATCCAAGACACCAGAATGCCAAGAAAACTCTGGGCTGTCAGGACAGTATCGGCACACCTaGTGCTTCATCTCGTGGGTA +
Preference number: 5 (lower is better)
Translates to: DPQPSKTPECQENSGLSGQYRHT*CFISWV
Trigger: TACCCACGAGATGAAGCACAAGGTGTGCCGATACTG...TCCTGACAGCCCAGAGTTTTCTTGGCATTCTGGTGTCTTGGATGGTTGAGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS-3UTR CAA 90 bp TTACAGGTGACATTGCCCCTTGGTCTTCAGTCTGTGCTTTCCACTGTGTGGCTACAGTATCGGCACACCTaGTGCTTCATCTCGTGGGTA +
Preference number: 5 (lower is better)
Translates to: LQVTLPLGLQSVLSTVWLQYRHT*CFISWV
Trigger: TACCCACGAGATGAAGCACAAGGTGTGCCGATACTG...TAGCCACACAGTGGAAAGCACAGACTGAAGACCAAGGGGCAATGTCACCTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS TCA 90 bp ATGGACAAACCGCAAAGCTGTCACAAATCACGACGTAACTCAGACTaGCAAGTAACAGTGGAAACTTCTGGAGGTGTTGCTGCGCGTGGG +
Preference number: 5 (lower is better)
Translates to: MDKPQSCHKSRRNSD*QVTVETSGGVAARG
Trigger: CCCACGCGCAGCAACACCTCCAGAAGTTTCCACTGTTACTTGTCAGTCTGAGTTACGTCGTGATTTGTGACAGCTTTGCGGTTTGTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS-3UTR CAA 90 bp CTTGTCTTGGAGAGGCAGTCTAACCTCAGCAGACCCGGGTTAAAAGCAAAGACATGTATTGCTGCACCTTaGTTAATGCAAAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: LVLERQSNLSRPGLKAKTCIAAP*LMQRPL
Trigger: CAGTGGCCTTTGCATTAACAAAGGTGCAGCAATACA...TGTCTTTGCTTTTAACCCGGGTCTGCTGAGGTTAGACTGCCTCTCCAAGACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021817.10
ENSMUST00000220447.2
CDS CAA 72 bp CCAGGCCCTGGTCCAGGCTCAGCCTCTGGCCCACCGTaGCCTGACAGTAAGACGAGCATCCCGGGGGAGGCT +
Preference number: 6 (lower is better)
Translates to: PGPGPGSASGPP*PDSKTSIPGEA
Trigger: AGCCTCCCCCGGGATGCTCGTCTTACTGTCAGGCAACGGTGGGCCAGAGGCTGAGCCTGGACCAGGGCCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS TCA 72 bp GCAGAACTACACAGCGCTGTGGCAGCGCCCCGTTCCTaGCAGCGCAGCAGCAAGGCAGAACACCAGCTCTGT +
Preference number: 6 (lower is better)
Translates to: AELHSAVAAPRS*QRSSKAEHQLC
Trigger: ACAGAGCTGGTGTTCTGCCTTGCTGCTGCGCTGTCAGGAACGGGGCGCTGCCACAGCGCTGTGTAGTTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS TCA 72 bp CTGTGGTTTCTCGAGGCTGAACTCCACTCGGTGGGCTaGCAGCACTCTGGGAACTTTCCCCTGTGCTGCCCA +
Preference number: 6 (lower is better)
Translates to: LWFLEAELHSVG*QHSGNFPLCCP
Trigger: TGGGCAGCACAGGGGAAAGTTCCCAGAGTGCTGTCAGCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS TCA 72 bp GCAAGGCAGAACACCAGCTCTGTGGTTTCTCGAGGCTaGACTCCACTCGGTGGGCTGACAGCACTCTGGGAA +
Preference number: 6 (lower is better)
Translates to: ARQNTSSVVSRG*TPLGGLTALWE
Trigger: TTCCCAGAGTGCTGTCAGCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAGAGCTGGTGTTCTGCCTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS GCA 72 bp CACAGCGCTGCGCGTGGGCCACCACAAGGCTCTTGTTaGCTTCGCCATGGTAACTCCATTCATTCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: HSAARGPPQGSC*LRHGNSIHSRP
Trigger: TGGACGAGAATGAATGGAGTTACCATGGCGAAGGCAACAAGAGCCTTGTGGTGGCCCACGCGCAGCGCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220447.2
CDS CCA 72 bp CAGCTCTGTGGTTTCTCGAGGCTGAACTCCACTCGGTaGGCTGACAGCACTCTGGGAACTTTCCCCTGTGCT +
Preference number: 6 (lower is better)
Translates to: QLCGFSRLNSTR*ADSTLGTFPCA
Trigger: AGCACAGGGGAAAGTTCCCAGAGTGCTGTCAGCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021817.10
CDS GCA 72 bp GGTGTTGCTGCGCGTGGGCCACCACAAGGCTCTTGTTaGCTTCGCCATGGTAACTCCATTCATTCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: GVAARGPPQGSC*LRHGNSIHSRP
Trigger: TGGACGAGAATGAATGGAGTTACCATGGCGAAGGCAACAAGAGCCTTGTGGTGGCCCACGCGCAGCAACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS GCA 72 bp CTGACAAGTAACAGTGGAAACTTCTGGAGGTGTTGCTaGGCGTGGGCCACCACAAGGCTCTTGTTGCCTTCG +
Preference number: 6 (lower is better)
Translates to: LTSNSGNFWRCC*AWATTRLLLPS
Trigger: CGAAGGCAACAAGAGCCTTGTGGTGGCCCACGCGCAGCAACACCTCCAGAAGTTTCCACTGTTACTTGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2
CDS GCA 72 bp AGACTGACAAGTAACAGTGGAAACTTCTGGAGGTGTTaGTGCGCGTGGGCCACCACAAGGCTCTTGTTGCCT +
Preference number: 6 (lower is better)
Translates to: RLTSNSGNFWRC*CAWATTRLLLP
Trigger: AGGCAACAAGAGCCTTGTGGTGGCCCACGCGCAGCAACACCTCCAGAAGTTTCCACTGTTACTTGTCAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220856.2