RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for INVS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028344

Ensembl transcript IDs: ENSMUST00000030029.10, ENSMUST00000143433.2

Found 397 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGGGCTGGAGTCCTCTCCTTTCTCAGCAGGCCGGCCTGACCCAGTaGACAAGGGCTGCCTGGCGCTGCTGGGCCCCTCCTCACACCTCC +
Preference number: 1 (lower is better)
Translates to: QGWSPLLSQQAGLTQ*TRAAWRCWAPPHTS
Trigger: GGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 90 bp TGCAACTGCAGGGCTGGAGTCCTCTCCTTTCTCAGCAGGCCGGCCTaGCCCAGTGCACAAGGGCTGCCTGGCGCTGCTGGGCCCCTCCTC +
Preference number: 1 (lower is better)
Translates to: CNCRAGVLSFLSRPA*PSAQGLPGAAGPLL
Trigger: GAGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCTGCAGTTGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 90 bp CTGCCAGGCCGGCTGGACCCAGCTGGGGAGCACCTGTCTCTGAGCTaGTGGGTGCGTCTTTTCTGCGAAGCACCTCTGGGCCTGGCTGCC +
Preference number: 1 (lower is better)
Translates to: LPGRLDPAGEHLSLS*WVRLFCEAPLGLAA
Trigger: GGCAGCCAGGCCCAGAGGTGCTTCGCAGAAAAGACGCACCCATCAGCTCAGAGACAGGTGCTCCCCAGCTGGGTCCAGCCGGCCTGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp TCCTCTCCTTTCTCAGCAGGCCGGCCTGACCCAGTGCACAAGGGCTaGCTGGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTGCCA +
Preference number: 1 (lower is better)
Translates to: SSPFSAGRPDPVHKG*LALLGPSSHLRCLP
Trigger: TGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTGAGAAAGGAGAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CTCCTTTCTCAGCAGGCCGGCCTGACCCAGTGCACAAGGGCTGCCTaGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTGCCATTGG +
Preference number: 1 (lower is better)
Translates to: LLSQQAGLTQCTRAA*RCWAPPHTSGVCHW
Trigger: CCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTGAGAAAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 90 bp TGGCACTGCCAGGCCGGCTGGACCCAGCTGGGGAGCACCTGTCTCTaGGCTGATGGGTGCGTCTTTTCTGCGAAGCACCTCTGGGCCTGG +
Preference number: 1 (lower is better)
Translates to: WHCQAGWTQLGSTCL*ADGCVFSAKHLWAW
Trigger: CCAGGCCCAGAGGTGCTTCGCAGAAAAGACGCACCCATCAGCTCAGAGACAGGTGCTCCCCAGCTGGGTCCAGCCGGCCTGGCAGTGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp AGGGCTGCCTGGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTaGCATTGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCT +
Preference number: 1 (lower is better)
Translates to: RAAWRCWAPPHTSGV*HWSHLCASPQRMFP
Trigger: AGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp ACAGGCAACTTCCCCCTTGGCACTGCCAGGCCGGCTGGACCCAGCTaGGGAGCACCTGTCTCTGAGCTGATGGGTGCGTCTTTTCTGCGA +
Preference number: 1 (lower is better)
Translates to: TGNFPLGTARPAGPS*GAPVSELMGASFLR
Trigger: TCGCAGAAAAGACGCACCCATCAGCTCAGAGACAGGTGCTCCCCAGCTGGGTCCAGCCGGCCTGGCAGTGCCAAGGGGGAAGTTGCCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 90 bp GGCCTCATTCTGGGGGCTGGGTGGACAGGGGAGGACAGGTGCAGATaGACTGCAGTGGGATCTGGGAGGATCGGTGTCCAGCTGCCCTTT +
Preference number: 1 (lower is better)
Translates to: GLILGAGWTGEDRCR*TAVGSGRIGVQLPF
Trigger: AAAGGGCAGCTGGACACCGATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTGTCCTCCCCTGTCCACCCAGCCCCCAGAATGAGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp GCCTGGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTGCCATTaGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCT +
Preference number: 1 (lower is better)
Translates to: AWRCWAPPHTSGVCH*SHLCASPQRMFPGS
Trigger: AGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CTGGGCCTGGCTGCCCTGTCCTGTCTCTTATTGGGCTTCCTGGGGTaGTCCTGCTGGGAAGCACTTGCAACTGCAGGGCTGGAGTCCTCT +
Preference number: 1 (lower is better)
Translates to: LGLAALSCLLLGFLG*SCWEALATAGLESS
Trigger: AGAGGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAGGACAGGGCAGCCAGGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp CTGTCTCTTATTGGGCTTCCTGGGGTGGTCCTGCTGGGAAGCACTTaGAACTGCAGGGCTGGAGTCCTCTCCTTTCTCAGCAGGCCGGCC +
Preference number: 1 (lower is better)
Translates to: LSLIGLPGVVLLGST*NCRAGVLSFLSRPA
Trigger: GGCCGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp TGGGGGCTGGGTGGACAGGGGAGGACAGGTGCAGATGAACTGCAGTaGGATCTGGGAGGATCGGTGTCCAGCTGCCCTTTCTGCTGTTCA +
Preference number: 1 (lower is better)
Translates to: WGLGGQGRTGADELQ*DLGGSVSSCPFCCS
Trigger: TGAACAGCAGAAAGGGCAGCTGGACACCGATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTGTCCTCCCCTGTCCACCCAGCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp CTGGCTGCCCTGTCCTGTCTCTTATTGGGCTTCCTGGGGTGGTCCTaGTGGGAAGCACTTGCAACTGCAGGGCTGGAGTCCTCTCCTTTC +
Preference number: 1 (lower is better)
Translates to: LAALSCLLLGFLGWS*WEALATAGLESSPF
Trigger: GAAAGGAGAGGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAGGACAGGGCAGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CCTGCTGTGTTCTGGGTCAGGGCTCTGGACTGTGTGGCTAGCAGGTaGCTGTTTGCTAGGGGTTGCGTCCTGCTTGCTGGCCTCATTCTG +
Preference number: 1 (lower is better)
Translates to: PAVFWVRALDCVASR*LFARGCVLLAGLIL
Trigger: CAGAATGAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAGCCACACAGTCCAGAGCCCTGACCCAGAACACAGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CGTTCCCTGAAGGTCTATGGAAGAATCCCCTTGGGAGGCTCTGCCTaGACATCTGCCTGGAGGCCTGCTGTGTTCTGGGTCAGGGCTCTG +
Preference number: 1 (lower is better)
Translates to: RSLKVYGRIPLGGSA*TSAWRPAVFWVRAL
Trigger: CAGAGCCCTGACCCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATAGACCTTCAGGGAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp GAAGGTCTATGGAAGAATCCCCTTGGGAGGCTCTGCCTGGACATCTaGCTGGAGGCCTGCTGTGTTCTGGGTCAGGGCTCTGGACTGTGT +
Preference number: 1 (lower is better)
Translates to: EGLWKNPLGRLCLDI*LEACCVLGQGSGLC
Trigger: ACACAGTCCAGAGCCCTGACCCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATAGACCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CCTCTCCTCGGAGAGGGTGGGCACCCTCTGGGTATTCTCCCACCCTaGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTG +
Preference number: 1 (lower is better)
Translates to: PLLGEGGHPLGILPP*HFRFLCGCAHPVPL
Trigger: CAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGGAGAATACCCAGAGGGTGCCCACCCTCTCCGAGGAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 90 bp AGGATGAGTGTGGCAGTTCTCATTTCCAGCCATGCTGGCTTGAGGTaGAGCACACAGCTAGGCAGTCCATCCGAGCGCCCTGCTCTGGTC +
Preference number: 1 (lower is better)
Translates to: RMSVAVLISSHAGLR*STQLGSPSERPALV
Trigger: GACCAGAGCAGGGCGCTCGGATGGACTGCCTAGCTGTGTGCTTCACCTCAAGCCAGCATGGCTGGAAATGAGAACTGCCACACTCATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR GCA 90 bp CTTCCTGAGCTGGTAGCTTCGCCAAGCTCGCTGGATGACCGCCGCTaGCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGTTCCCT +
Preference number: 1 (lower is better)
Translates to: LPELVASPSSLDDRR*LVFPSKQLFPASFP
Trigger: AGGGAACGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAGCGAGCTTGGCGAAGCTACCAGCTCAGGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp AGGTGTTGTCAGGATGAGTGTGGCAGTTCTCATTTCCAGCCATGCTaGCTTGAGGTGAAGCACACAGCTAGGCAGTCCATCCGAGCGCCC +
Preference number: 1 (lower is better)
Translates to: RCCQDECGSSHFQPC*LEVKHTARQSIRAP
Trigger: GGGCGCTCGGATGGACTGCCTAGCTGTGTGCTTCACCTCAAGCCAGCATGGCTGGAAATGAGAACTGCCACACTCATCCTGACAACACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 90 bp TGGGTGTTTCACTTGGCTTTCTGGAGGCCGTTCCCTGAAGGTCTATaGAAGAATCCCCTTGGGAGGCTCTGCCTGGACATCTGCCTGGAG +
Preference number: 1 (lower is better)
Translates to: WVFHLAFWRPFPEGL*KNPLGRLCLDICLE
Trigger: CTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATAGACCTTCAGGGAACGGCCTCCAGAAAGCCAAGTGAAACACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CACACAGGCAGAGGGGCCTCTGCAGTGCTCTATGGGTGTTTCACTTaGCTTTCTGGAGGCCGTTCCCTGAAGGTCTATGGAAGAATCCCC +
Preference number: 1 (lower is better)
Translates to: HTGRGASAVLYGCFT*LSGGRSLKVYGRIP
Trigger: GGGGATTCTTCCATAGACCTTCAGGGAACGGCCTCCAGAAAGCCAAGTGAAACACCCATAGAGCACTGCAGAGGCCCCTCTGCCTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp GGTGCAGATGAACTGCAGTGGGATCTGGGAGGATCGGTGTCCAGCTaGCCTTTCTGCTGTTCAGCTTCCTTCCTCTTGTTTTCCTCTTCC +
Preference number: 1 (lower is better)
Translates to: GADELQWDLGGSVSS*PFCCSASFLLFSSS
Trigger: GGAAGAGGAAAACAAGAGGAAGGAAGCTGAACAGCAGAAAGGGCAGCTGGACACCGATCCTCCCAGATCCCACTGCAGTTCATCTGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp TCCAGTTCTTTCCTCCAAACCTGGAGGAGCAGGGCTGTGCACACTTaGGTACATCTGAGCACTTCTCTGGCTCCAAGCTGCTTCAAATGC +
Preference number: 1 (lower is better)
Translates to: SSSFLQTWRSRAVHT*VHLSTSLAPSCFKC
Trigger: GCATTTGAAGCAGCTTGGAGCCAGAGAAGTGCTCAGATGTACCCAAGTGTGCACAGCCCTGCTCCTCCAGGTTTGGAGGAAAGAACTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 90 bp ATGTCCTTTCCCTTCTTGAGAACAACCGTAGATCTGCCTGAGCACTaGGTGCCTGGCATACTTTGTGGCCGACGAGCCTTTGGATGGACT +
Preference number: 1 (lower is better)
Translates to: MSFPFLRTTVDLPEH*VPGILCGRRAFGWT
Trigger: AGTCCATCCAAAGGCTCGTCGGCCACAAAGTATGCCAGGCACTCAGTGCTCAGGCAGATCTACGGTTGTTCTCAAGAAGGGAAAGGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp CCTGCAAGTTGGTCAGAAGATGCAGAGGGGAAGAGAAGCCTGAGTTaGTTGGTGCATTCTGCTGTAAGCCCTGTCTTGCTGACTTTTGGT +
Preference number: 1 (lower is better)
Translates to: PASWSEDAEGKRSLS*LVHSAVSPVLLTFG
Trigger: ACCAAAAGTCAGCAAGACAGGGCTTACAGCAGAATGCACCAACCAACTCAGGCTTCTCTTCCCCTCTGCATCTTCTGACCAACTTGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 90 bp GCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTaGGATAGCCCTTGCTCCAGTTATTCAGGACCCACAGGGAGGCCT +
Preference number: 1 (lower is better)
Translates to: AAQLEEHILHIGNSF*DSPCSSYSGPTGRP
Trigger: AGGCCTCCCTGTGGGTCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 90 bp ATGGACTCTTCGATGTCCTGCTTACTGAGATGGACTTTGGGAATTTaGGTTCCAGTTCTTTCCTCCAAACCTGGAGGAGCAGGGCTGTGC +
Preference number: 1 (lower is better)
Translates to: MDSSMSCLLRWTLGI*VPVLSSKPGGAGLC
Trigger: GCACAGCCCTGCTCCTCCAGGTTTGGAGGAAAGAACTGGAACTCAAATTCCCAAAGTCCATCTCAGTAAGCAGGACATCGAAGAGTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp AGAAGATGCAGAGGGGAAGAGAAGCCTGAGTTGGTTGGTGCATTCTaGTGTAAGCCCTGTCTTGCTGACTTTTGGTGCTGTGCTAGCATT +
Preference number: 1 (lower is better)
Translates to: RRCRGEEKPELVGAF*CKPCLADFWCCASI
Trigger: AATGCTAGCACAGCACCAAAAGTCAGCAAGACAGGGCTTACAGCAGAATGCACCAACCAACTCAGGCTTCTCTTCCCCTCTGCATCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR GCA 90 bp AAGAGTGGCAGTGTTCAGGAGCAGTGGCTTACAGACTTACATTACTaGTTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATA +
Preference number: 1 (lower is better)
Translates to: KSGSVQEQWLTDLHY*FSVYISGHPQGPSI
Trigger: TATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTCCTGAACACTGCCACTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 90 bp GGCACTCTGTTATCATGGAGTAAGCACTGTGCTAGGGTACTTCTATaGCAGTGGGTGTTTGCTGTGGGGATTTACATCTCAGTCGGTCAG +
Preference number: 1 (lower is better)
Translates to: GTLLSWSKHCARVLL*QWVFAVGIYISVGQ
Trigger: CTGACCGACTGAGATGTAAATCCCCACAGCAAACACCCACTGCCATAGAAGTACCCTAGCACAGTGCTTACTCCATGATAACAGAGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 90 bp GAGATGGACTTTGGGAATTTGAGTTCCAGTTCTTTCCTCCAAACCTaGAGGAGCAGGGCTGTGCACACTTGGGTACATCTGAGCACTTCT +
Preference number: 1 (lower is better)
Translates to: EMDFGNLSSSSFLQT*RSRAVHTWVHLSTS
Trigger: AGAAGTGCTCAGATGTACCCAAGTGTGCACAGCCCTGCTCCTCCAGGTTTGGAGGAAAGAACTGGAACTCAAATTCCCAAAGTCCATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp TTTGTAGACTGCTTGGATTTTGAAGGCAGCGATGTCTTGTATAGCTaGGATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTC +
Preference number: 1 (lower is better)
Translates to: FVDCLDFEGSDVLYS*DGQGTMFQHELDHL
Trigger: GAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTATACAAGACATCGCTGCCTTCAAAATCCAAGCAGTCTACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 90 bp CTTCCGGTCTCGGAAGGCTTTTCTGACCTTGTATCCTTTGTAGACTaGTTGGATTTTGAAGGCAGCGATGTCTTGTATAGCTGCGATGGA +
Preference number: 1 (lower is better)
Translates to: LPVSEGFSDLVSFVD*LDFEGSDVLYSCDG
Trigger: TCCATCGCAGCTATACAAGACATCGCTGCCTTCAAAATCCAAGCAGTCTACAAAGGATACAAGGTCAGAAAAGCCTTCCGAGACCGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 90 bp TGTTTTTCTCTGCAGACTTTAAAGAGTGGCAGTGTTCAGGAGCAGTaGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGC +
Preference number: 1 (lower is better)
Translates to: CFSLQTLKSGSVQEQ*LTDLHYCFSVYISG
Trigger: GCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTCCTGAACACTGCCACTCTTTAAAGTCTGCAGAGAAAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 90 bp TCTCTTGTGATTTTCATTACAGTATGTTCCAGGGAAGTAAAGAGTTaGGGGTGGTTGTTGTGGCCCAGGTTTCCTATCTCATTGAAGAAG +
Preference number: 1 (lower is better)
Translates to: SLVIFITVCSREVKS*GWLLWPRFPISLKK
Trigger: CTTCTTCAATGAGATAGGAAACCTGGGCCACAACAACCACCCTCAACTCTTTACTTCCCTGGAACATACTGTAATGAAAATCACAAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 90 bp ATGCTGGGTAACAAGTCTTTAGGTGCAAATAGTAAAGCGTTCTCATaGGTAAGAGTTTACAGAGAGCAGAATTCCACACTGGTTCTGATC +
Preference number: 1 (lower is better)
Translates to: MLGNKSLGANSKAFS*VRVYREQNSTLVLI
Trigger: GATCAGAACCAGTGTGGAATTCTGCTCTCTGTAAACTCTTACTCATGAGAACGCTTTACTATTTGCACCTAAAGACTTGTTACCCAGCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp TTCTGCGAAGCACCTCTGGGCCTGGCTGCCCTGTCCTGTCTCTTATTGGGCTTCGCCGGCCTGACCCAGTaGACAAGGGCTGCCTGGCGC +
Preference number: 2 (lower is better)
Translates to: FCEAPLGLAALSCLLLGFAGLTQ*TRAAWR
Trigger: GCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGC...GAAGCCCAATAAGAGACAGGACAGGGCAGCCAGGCCCAGAGGTGCTTCGCAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp TGCCTGGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTGCCATaGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTC +
Preference number: 2 (lower is better)
Translates to: CLALLGPSSHLRCLP*VSPLRFSTEDVPWF
Trigger: GAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp CTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGCCAGTGCACAAGGGCTaGCTGGCGCTGCTGGGCCCC +
Preference number: 2 (lower is better)
Translates to: LDDRRCLVFPSKQLFPASPVHKG*LALLGP
Trigger: GGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGG...CGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp TGTTCTGGGTCAGGGCTCTGGACTGTGTGGCTAGCAGGTGGCTGTTaGCTAGGGGTTGCGTCCTGCTTGCTGGCCTCATTCTGGGGGCTG +
Preference number: 2 (lower is better)
Translates to: CSGSGLWTVWLAGGC*LGVASCLLASFWGL
Trigger: CAGCCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAGCCACACAGTCCAGAGCCCTGACCCAGAACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp CCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTGGAGCTGTaGCCACCTTCCCAGGATCTGGGGTGCACACAGGCAGAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: PLRFSTEDVPWFLEL*PPSQDLGCTQAEGP
Trigger: AGGCCCCTCTGCCTGTGTGCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp CCTGTCTCTTATTGGGCTTCCTGGGGTGGTCCTGCTGGGAAGCACTaGCAACTGCAGGGCTGGAGTCCTCTCCTTTCTCAGCAGGCCGGC +
Preference number: 2 (lower is better)
Translates to: PVSYWASWGGPAGKH*QLQGWSPLLSQQAG
Trigger: GCCGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp TTCTGCGAAGCACCTCTGGGCCTGGCTGCCCTGTCCTGTCTCTTATTGGGCTTCCCTCATTCTGGGGGCTaGGTGGACAGGGGAGGACAG +
Preference number: 2 (lower is better)
Translates to: FCEAPLGLAALSCLLLGFPHSGG*VDRGGQ
Trigger: CTGTCCTCCCCTGTCCACCCAGCCCCCAGAATGAGG...GAAGCCCAATAAGAGACAGGACAGGGCAGCCAGGCCCAGAGGTGCTTCGCAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACTGCACAAGGGCTGCCTaGCGCTGCTGGGCCCCTCCT +
Preference number: 2 (lower is better)
Translates to: VADEPLDGLFDVLLTEMDCTRAA*RCWAPP
Trigger: AGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCA...GTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp TTGGGCTTCCTGGGGTGGTCCTGCTGGGAAGCACTTGCAACTGCAGGGCTGGAGGCAGATGAACTGCAGTaGGATCTGGGAGGATCGGTG +
Preference number: 2 (lower is better)
Translates to: LGFLGWSCWEALATAGLEADELQ*DLGGSV
Trigger: CACCGATCCTCCCAGATCCCACTGCAGTTCATCTGC...CTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp TCGCTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTTGCTGGCCTCATTCTaGGGGCTGGGTGGACAGGGG +
Preference number: 2 (lower is better)
Translates to: SLDDRRCLVFPSKQLFPALLASF*GLGGQG
Trigger: CCCCTGTCCACCCAGCCCCCAGAATGAGGCCAGCAA...AGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GCAGGTGGCTGTTTGCTAGGGGTTGCGTCCTGCTTGCTGGCCTCATTCTGGGGGAACTGGATCACCTCATaGCGCTCACCAAGCAATGCA +
Preference number: 2 (lower is better)
Translates to: AGGCLLGVASCLLASFWGNWITS*RSPSNA
Trigger: TGCATTGCTTGGTGAGCGCCATGAGGTGATCCAGTT...CCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GGATCATGGGAAAATTCATCCCATGCTGCCCCCATCTGCTCTCCACTGTGGTGGTTGCGTCCTGCTTGCTaGCCTCATTCTGGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: GSWENSSHAAPICSPLWWLRPAC*PHSGGW
Trigger: CCAGCCCCCAGAATGAGGCCAGCAAGCAGGACGCAA...CCACCACAGTGGAGAGCAGATGGGGGCAGCATGGGATGAATTTTCCCATGATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp CTTGCTTCTTGGTGTGTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCGGCTGGACCCAGCTaGGGAGCACCTGTCTCTGAG +
Preference number: 2 (lower is better)
Translates to: LASWCVTVERTLISTGNFPAGPS*GAPVSE
Trigger: CTCAGAGACAGGTGCTCCCCAGCTGGGTCCAGCCGG...GAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACACCAAGAAGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp GTACATCTGAGCACTTCTCTGGCTCCAAGCTGCTTCAAATGCAGAAGCCGAGACTCCCAGGATCTGGGGTaGACACAGGCAGAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: VHLSTSLAPSCFKCRSRDSQDLG*TQAEGP
Trigger: AGGCCCCTCTGCCTGTGTGCACCCCAGATCCTGGGA...GTCTCGGCTTCTGCATTTGAAGCAGCTTGGAGCCAGAGAAGTGCTCAGATGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp CTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGAGGCCTGCTGTGTTCTaGGTCAGGGCTCTGGACTGT +
Preference number: 2 (lower is better)
Translates to: LDDRRCLVFPSKQLFPASRPAVF*VRALDC
Trigger: ACAGTCCAGAGCCCTGACCCAGAACACAGCAGGCCT...CGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp CGAAACAGCTCTTTCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTGCCTGGACATCTGCCTaGAGGCCTGCTGTGTTCTGG +
Preference number: 2 (lower is better)
Translates to: RNSSFLLRSLWIISRRCSAWTSA*RPAVFW
Trigger: CCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGC...AGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACTGCCTCCGGTGTTTGCCATTaGTCTCACCTCTGCGCTTCT +
Preference number: 2 (lower is better)
Translates to: VTVERTLISTGNFPLGTASGVCH*SHLCAS
Trigger: AGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGA...GGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp ACTTTGTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATCTGCGAAGCACCTCTaGGCCTGGCTGCCCTGTCCT +
Preference number: 2 (lower is better)
Translates to: TLWPTSLWMDSSMSCLLRSAKHL*AWLPCP
Trigger: AGGACAGGGCAGCCAGGCCCAGAGGTGCTTCGCAGA...TCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCACAAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp GTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACAGGCAGAGGGGCCTCTaGAGTGCTCTATGGGTGTTT +
Preference number: 2 (lower is better)
Translates to: VADEPLDGLFDVLLTEMDRQRGL*SALWVF
Trigger: AAACACCCATAGAGCACTGCAGAGGCCCCTCTGCCT...GTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACTGCCTGTTCCAGCATGAACTaGATCACCTCATGGCGCTCA +
Preference number: 2 (lower is better)
Translates to: VTVERTLISTGNFPLGTACSSMN*ITSWRS
Trigger: TGAGCGCCATGAGGTGATCCAGTTCATGCTGGAACA...GGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GGATCATGGGAAAATTCATCCCATGCTGCCCCCATCTGCTCTCCACTGTGGTGGTGTGTGGCTAGCAGGTaGCTGTTTGCTAGGGGTTGC +
Preference number: 2 (lower is better)
Translates to: GSWENSSHAAPICSPLWWCVASR*LFARGC
Trigger: GCAACCCCTAGCAAACAGCCACCTGCTAGCCACACA...CCACCACAGTGGAGAGCAGATGGGGGCAGCATGGGATGAATTTTCCCATGATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp AAAGACAATCTGAAGTCAAAGGATCATGGGAAAATTCATCCCATGCTGCCCCCAGCTGCCTGGCGCTGCTaGGCCCCTCCTCACACCTCC +
Preference number: 2 (lower is better)
Translates to: KDNLKSKDHGKIHPMLPPAAWRC*APPHTS
Trigger: GGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGC...TGGGGGCAGCATGGGATGAATTTTCCCATGATCCTTTGACTTCAGATTGTCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp TGCCTGAGCACTGAGTGCCTGGCATACTTTGTGGCCGACGAGCCTTaGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACTTTGGG +
Preference number: 2 (lower is better)
Translates to: CLSTECLAYFVADEP*DGLFDVLLTEMDFG
Trigger: CCCAAAGTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCACAAAGTATGCCAGGCACTCAGTGCTCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp TTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGTTCCCTCTGGATTATCAGCAGGGGGTTGCGTCCTGCTTaGTGGCCTCATTCTGGGGGC +
Preference number: 2 (lower is better)
Translates to: FFRRNSSFLLRSLWIISRGLRPA*WPHSGG
Trigger: GCCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCC...CCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTCGACGGAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp TTTGCCATTGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTCTGTTTGCTAGGGGTTaGGTCCTGCTTGCTGGCCTC +
Preference number: 2 (lower is better)
Translates to: FAIGLTSALLHRGCSLVLLFARG*VLLAGL
Trigger: GAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAG...AAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp GCCATTGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTGGAGAGGGGCCTCTGCAGTaGTCTATGGGTGTTTCACTT +
Preference number: 2 (lower is better)
Translates to: AIGLTSALLHRGCSLVLGEGPLQ*SMGVSL
Trigger: AAGTGAAACACCCATAGAGCACTGCAGAGGCCCCTC...TCCAAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp GATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGTTCGGTTCTTGGAGCTGTTaGCACCTTCCCAGGATCTGG +
Preference number: 2 (lower is better)
Translates to: DDRRCLVFPSKQLFPASFGSWSC*HLPRIW
Trigger: CCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACC...GAACGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp CTTGCTTCTTGGTGTGTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCTGGGGTGGTCCTGCTaGGAAGCACTTGCAACTGCA +
Preference number: 2 (lower is better)
Translates to: LASWCVTVERTLISTGNFLGWSC*EALATA
Trigger: TGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAG...GAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACACCAAGAAGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp TCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTACAGGAAGAAGGTCAGGTGCAGATGAACTaGAGTGGGATCTGGGAGGAT +
Preference number: 2 (lower is better)
Translates to: SCFVPSGLSAGAALQEEGQVQMN*SGIWED
Trigger: ATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTG...ACCTTCTTCCTGTAGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACTTCCCTGAAGGTCTATaGAAGAATCCCCTTGGGAGG +
Preference number: 2 (lower is better)
Translates to: VADEPLDGLFDVLLTEMDFPEGL*KNPLGR
Trigger: CCTCCCAAGGGGATTCTTCCATAGACCTTCAGGGAA...GTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp TCGCTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTGCCAGTCTCTGGAGATaGACAGATGTCCTCATAAAG +
Preference number: 2 (lower is better)
Translates to: SLDDRRCLVFPSKQLFPAASLWR*TDVLIK
Trigger: CTTTATGAGGACATCTGTGCATCTCCAGAGACTGGC...AGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAGCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCCGAGCGCCCTGCTCTaGTCCTTTCAGTGCATGCTG +
Preference number: 2 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCPSALL*SFQCML
Trigger: CAGCATGCACTGAAAGGACCAGAGCAGGGCGCTCGG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CCA 90 bp TCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTACAGGAAGAAGGTTATGGGTGTTTCACTTaGCTTTCTGGAGGCCGTTCC +
Preference number: 2 (lower is better)
Translates to: SCFVPSGLSAGAALQEEGYGCFT*LSGGRS
Trigger: GGAACGGCCTCCAGAAAGCCAAGTGAAACACCCATA...ACCTTCTTCCTGTAGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp GTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACCCTATAAGCTTGTCCTaGGTCACCTTGCTTCTTGGT +
Preference number: 2 (lower is better)
Translates to: VADEPLDGLFDVLLTEMDPISLS*VTLLLG
Trigger: ACCAAGAAGCAAGGTGACCCAGGACAAGCTTATAGG...GTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp TCCTGCAAGTTGGTCAGAAGATGCAGAGGGGAAGAGAAGCCTGAGTaGGTTGGTGCATTCTGCTGTAAGCCCTGTCTTGCTGACTTTTGG +
Preference number: 2 (lower is better)
Translates to: SCKLVRRCRGEEKPE*VGAFCCKPCLADFW
Trigger: CCAAAAGTCAGCAAGACAGGGCTTACAGCAGAATGCACCAACCAACTCAGGCTTCTCTTCCCCTCTGCATCTTCTGACCAACTTGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGCATGCTGGCTTGAGGTaGAGCACACAGCTAGGCAGT +
Preference number: 2 (lower is better)
Translates to: FSVYISGHPQGPSILNALHAGLR*STQLGS
Trigger: ACTGCCTAGCTGTGTGCTTCACCTCAAGCCAGCATG...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATGGTGCCACTCAGCAGTaGAAGCCGAGCTTCTGTTCT +
Preference number: 2 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHGATQQ*KPSFCS
Trigger: AGAACAGAAGCTCGGCTTTCACTGCTGAGTGGCACC...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp CTTGCTTCTTGGTGTGTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCGATGTCTTGTATAGCTaGGATGGACAGGGCACCATG +
Preference number: 2 (lower is better)
Translates to: LASWCVTVERTLISTGNFDVLYS*DGQGTM
Trigger: CATGGTGCCCTGTCCATCGCAGCTATACAAGACATC...GAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACACCAAGAAGCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp AGATTTGATGGGATGATGTCCTTTCCCTTCTTGAGAACAACCGTAGATCTGCCTAAGCACCTCTGGGCCTaGCTGCCCTGTCCTGTCTCT +
Preference number: 2 (lower is better)
Translates to: RFDGMMSFPFLRTTVDLPKHLWA*LPCPVS
Trigger: AGAGACAGGACAGGGCAGCCAGGCCCAGAGGTGCTT...AGGCAGATCTACGGTTGTTCTCAAGAAGGGAAAGGACATCATCCCATCAAATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR GCA 90 bp GCCATTGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTGGAGTATCCTTTGTAGACTaGTTGGATTTTGAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: AIGLTSALLHRGCSLVLGVSFVD*LDFEGS
Trigger: GCTGCCTTCAAAATCCAAGCAGTCTACAAAGGATAC...TCCAAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGCTCTCTGGACCAACCTaGAAACTGAGCACGGTAAGG +
Preference number: 2 (lower is better)
Translates to: FSVYISGHPQGPSILNALLSGPT*KLSTVR
Trigger: CCTTACCGTGCTCAGTTTCCAGGTTGGTCCAGAGAG...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CCA 90 bp AAAGACAATCTGAAGTCAAAGGATCATGGGAAAATTCATCCCATGCTGCCCCCATCTGGGTCAGGGCTCTaGACTGTGTGGCTAGCAGGT +
Preference number: 2 (lower is better)
Translates to: KDNLKSKDHGKIHPMLPPSGSGL*TVWLAG
Trigger: ACCTGCTAGCCACACAGTCCAGAGCCCTGACCCAGA...TGGGGGCAGCATGGGATGAATTTTCCCATGATCCTTTGACTTCAGATTGTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 90 bp CTTGTATCCTTTGTAGACTGCTTGGATTTTGAAGGCAGCGATGTCTaGTATAGCTGCGATGGACAGGGCACCATGTTCCAGCATGAACTG +
Preference number: 2 (lower is better)
Translates to: LVSFVDCLDFEGSDV*YSCDGQGTMFQHEL
Trigger: CAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTATACAAGACATCGCTGCCTTCAAAATCCAAGCAGTCTACAAAGGATACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR TCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCAGGGGAAGAGAAGCCTaGGTTGGTTGGTGCATTCTG +
Preference number: 2 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCRGREA*VGWCIL
Trigger: CAGAATGCACCAACCAACTCAGGCTTCTCTTCCCCT...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGTCATTCACTTACCAGTaGATCTTTGTGATCTCATCT +
Preference number: 2 (lower is better)
Translates to: PTLALQISMWLCSSSPTESFTYQ*IFVISS
Trigger: AGATGAGATCACAAAGATTCACTGGTAAGTGAATGA...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGATTAAAGAAGCACCATaGTACCTCCTGTTTGAAGTT +
Preference number: 2 (lower is better)
Translates to: PTLALQISMWLCSSSPTEIKEAP*YLLFEV
Trigger: AACTTCAAACAGGAGGTACCATGGTGCTTCTTTAAT...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCAGGTGTTGTCAGGATaGGTGTGGCAGTTCTCATTT +
Preference number: 2 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCQVLSG*VWQFSF
Trigger: AAATGAGAACTGCCACACTCATCCTGACAACACCTG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAAGCACAGTACTGACCTaGCGTCGTCGCTGCCTCTGT +
Preference number: 2 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTSTVLT*RRRCLC
Trigger: ACAGAGGCAGCGACGACGTCAGGTCAGTACTGTGCT...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGAAGTTGGTCAGAAGATaGAGAGGGGAAGAGAAGCCT +
Preference number: 2 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLKLVRR*RGEEKP
Trigger: AGGCTTCTCTTCCCCTCTGCATCTTCTGACCAACTT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGATTGGTTGGTGCATTCTaGTGTAAGCCCTGTCTTGCT +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGLVGAF*CKPCLA
Trigger: AGCAAGACAGGGCTTACAGCAGAATGCACCAACCAA...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp AAAGACAATCTGAAGTCAAAGGATCATGGGAAAATTCATCCCATGCTGCCCCCAGAAACAGCTCTTTCCTaGTTCGTTCCCTCTGGATTA +
Preference number: 2 (lower is better)
Translates to: KDNLKSKDHGKIHPMLPPETALS*FVPSGL
Trigger: TAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTC...TGGGGGCAGCATGGGATGAATTTTCCCATGATCCTTTGACTTCAGATTGTCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR TCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGTTTGAACCTTGTCTTTaGCCACATATGCTGGGTAAC +
Preference number: 2 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLFEPCL*PHMLGN
Trigger: GTTACCCAGCATATGTGGTCAAAGACAAGGTTCAAA...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCAGTGAGGTAAACACTTaGTTCCTGACCTTCACTGTT +
Preference number: 2 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCSEVNT*FLTFTV
Trigger: AACAGTGAAGGTCAGGAAGCAAGTGTTTACCTCACT...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CAA 90 bp GTCTCTTGTGATTTTCATTACAGTATGTTCCAGGGAAGTAAAGAGTaGAGGGTGGTTGTTGTGGCCCAGGTTTCCTATCTCATTGAAGAA +
Preference number: 2 (lower is better)
Translates to: VSCDFHYSMFQGSKE*RVVVVAQVSYLIEE
Trigger: TTCTTCAATGAGATAGGAAACCTGGGCCACAACAACCACCCTCAACTCTTTACTTCCCTGGAACATACTGTAATGAAAATCACAAGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACCAGGAGAAAACATTTaGACCTTGTCTTTGACCACA +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGPGENI*TLSLTT
Trigger: TGTGGTCAAAGACAAGGTTCAAATGTTTTCTCCTGG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCGGCTATAGAACAGTTTaGATTTCTGAGGAGCTAAAT +
Preference number: 2 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCGYRTV*ISEELN
Trigger: ATTTAGCTCCTCAGAAATTCAAACTGTTCTATAGCC...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR TCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGACTCTTATGGAGGCATaGAAAATGTCAGGTTCTCAA +
Preference number: 2 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLTLMEA*KMSGSQ
Trigger: TTGAGAACCTGACATTTTTCATGCCTCCATAAGAGT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACTCTGGTCCTTTCAGTaGATGCTGAGAGGAATAAAA +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGLWSFQ*MLRGIK
Trigger: TTTTATTCCTCTCAGCATGCACTGAAAGGACCAGAG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAAATGCTACCTATTCCTaGAAGTTGGTCAGAAGATGC +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGNATYS*KLVRRC
Trigger: GCATCTTCTGACCAACTTGCAGGAATAGGTAGCATT...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAACTGCTTTTGGGGAATaGTACCTATTCCTGCAAGTT +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGTAFGE*YLFLQV
Trigger: AACTTGCAGGAATAGGTAGCATTCCCCAAAAGCAGT...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAACAGACTTACATTACTaGTTCAGCGTGTACATCAGT +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGTDLHY*FSVYIS
Trigger: ACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGT...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR GCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCGTTCTCAAACTAAAGTaGCTTTTGTTTTTCTCTGCA +
Preference number: 2 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCVLKLK*LLFFSA
Trigger: TGCAGAGAAAAACAAAAGGCACTTTAGTTTGAGAAC...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAAAGAGAAGCCTGAGTTaGTTGGTGCATTCTGCTGTA +
Preference number: 2 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTKRSLS*LVHSAV
Trigger: TACAGCAGAATGCACCAACCAACTCAGGCTTCTCTT...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAAAAAGAAACTGCTTTTaGGGAATGCTACCTATTCCT +
Preference number: 2 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGKRNCF*GMLPIP
Trigger: AGGAATAGGTAGCATTCCCCAAAAGCAGTTTCTTTT...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 72 bp CAGCAGGCCGGCCTGACCCAGTGCACAAGGGCTGCCTaGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTT +
Preference number: 3 (lower is better)
Translates to: QQAGLTQCTRAA*RCWAPPHTSGV
Trigger: AACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 72 bp AGGGCTGGAGTCCTCTCCTTTCTCAGCAGGCCGGCCTaGCCCAGTGCACAAGGGCTGCCTGGCGCTGCTGGG +
Preference number: 3 (lower is better)
Translates to: RAGVLSFLSRPA*PSAQGLPGAAG
Trigger: CCCAGCAGCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp GGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTaGCACTGCCAGGCCGGCTGGACCCAGCTGGGGAGC +
Preference number: 3 (lower is better)
Translates to: GENSDQHRQLPP*HCQAGWTQLGS
Trigger: GCTCCCCAGCTGGGTCCAGCCGGCCTGGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp AACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACTaGCAGGCCGGCTGGACCCAGCTGGGGAGCACCTGT +
Preference number: 3 (lower is better)
Translates to: NSDQHRQLPPWH*QAGWTQLGSTC
Trigger: ACAGGTGCTCCCCAGCTGGGTCCAGCCGGCCTGGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp CTTCCTGGGGTGGTCCTGCTGGGAAGCACTTGCAACTaGAGGGCTGGAGTCCTCTCCTTTCTCAGCAGGCCG +
Preference number: 3 (lower is better)
Translates to: LPGVVLLGSTCN*RAGVLSFLSRP
Trigger: CGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp GGCCTGCTGTGTTCTGGGTCAGGGCTCTGGACTGTGTaGCTAGCAGGTGGCTGTTTGCTAGGGGTTGCGTCC +
Preference number: 3 (lower is better)
Translates to: GLLCSGSGLWTV*LAGGCLLGVAS
Trigger: GGACGCAACCCCTAGCAAACAGCCACCTGCTAGCCACACAGTCCAGAGCCCTGACCCAGAACACAGCAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp CCTGGTTCTTGGAGCTGTTGCCACCTTCCCAGGATCTaGGGTGCACACAGGCAGAGGGGCCTCTGCAGTGCT +
Preference number: 3 (lower is better)
Translates to: PGSWSCCHLPRI*GAHRQRGLCSA
Trigger: AGCACTGCAGAGGCCCCTCTGCCTGTGTGCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp TGGAAGAATCCCCTTGGGAGGCTCTGCCTGGACATCTaGCTGGAGGCCTGCTGTGTTCTGGGTCAGGGCTCT +
Preference number: 3 (lower is better)
Translates to: WKNPLGRLCLDI*LEACCVLGQGS
Trigger: AGAGCCCTGACCCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp GGTGCGTCTTTTCTGCGAAGCACCTCTGGGCCTGGCTaGCCTGTCCTGTCTCTTATTGGGCTTCCTGGGGTG +
Preference number: 3 (lower is better)
Translates to: GASFLRSTSGPG*PVLSLIGLPGV
Trigger: CACCCCAGGAAGCCCAATAAGAGACAGGACAGGGCAGCCAGGCCCAGAGGTGCTTCGCAGAAAAGACGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp TTCTGGGTCAGGGCTCTGGACTGTGTGGCTAGCAGGTaGCTGTTTGCTAGGGGTTGCGTCCTGCTTGCTGGC +
Preference number: 3 (lower is better)
Translates to: FWVRALDCVASR*LFARGCVLLAG
Trigger: GCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAGCCACACAGTCCAGAGCCCTGACCCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp GGCTTCCTGGGGTGGTCCTGCTGGGAAGCACTTGCAACTGCAGGGCTGGAGTCCTCCTCTTCCCGTTTTTaGGCTGCAGCGTCTTTCCTC +
Preference number: 3 (lower is better)
Translates to: GFLGWSCWEALATAGLESSSSRF*AAASFL
Trigger: GAGGAAAGACGCTGCAGCCAAAAAACGGGAAGAGGA...GGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp CCCAGGATCTGGGGTGCACACAGGCAGAGGGGCCTCTaGAGTGCTCTATGGGTGTTTCACTTGGCTTTCTGG +
Preference number: 3 (lower is better)
Translates to: PRIWGAHRQRGL*SALWVFHLAFW
Trigger: CCAGAAAGCCAAGTGAAACACCCATAGAGCACTGCAGAGGCCCCTCTGCCTGTGTGCACCCCAGATCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp CTGTCCTGTCTCTTATTGGGCTTCCTGGGGTGGTCCTaGTGGGAAGCACTTGCAACTGCAGGGCTGGAGTCC +
Preference number: 3 (lower is better)
Translates to: LSCLLLGFLGWS*WEALATAGLES
Trigger: GGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAGGACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp GGTGCACACAGGCAGAGGGGCCTCTGCAGTGCTCTATaGGTGTTTCACTTGGCTTTCTGGAGGCCGTTCCCT +
Preference number: 3 (lower is better)
Translates to: GAHRQRGLCSAL*VFHLAFWRPFP
Trigger: AGGGAACGGCCTCCAGAAAGCCAAGTGAAACACCCATAGAGCACTGCAGAGGCCCCTCTGCCTGTGTGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp CGAAACAGCTCTTTCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTGGGGTTGCGTCCTGCTaGCTGGCCTCATTCTGGGGG +
Preference number: 3 (lower is better)
Translates to: RNSSFLLRSLWIISRRCSGVASC*LASFWG
Trigger: CCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCCC...AGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp CAGGGGAGGACAGGTGCAGATGAACTGCAGTGGGATCTGGGAGGATCGGTGTCCGAAGGCAGCGATGTCTaGTATAGCTGCGATGGACAG +
Preference number: 3 (lower is better)
Translates to: QGRTGADELQWDLGGSVSEGSDV*YSCDGQ
Trigger: CTGTCCATCGCAGCTATACAAGACATCGCTGCCTTC...GGACACCGATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTGTCCTCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp CTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGCTAGCAGGTGGCTGTTaGCTAGGGGTTGCGTCCTGC +
Preference number: 3 (lower is better)
Translates to: LDDRRCLVFPSKQLFPASLAGGC*LGVASC
Trigger: GCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAG...CGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 72 bp GTGGCAGTTCTCATTTCCAGCCATGCTGGCTTGAGGTaGAGCACACAGCTAGGCAGTCCATCCGAGCGCCCT +
Preference number: 3 (lower is better)
Translates to: VAVLISSHAGLR*STQLGSPSERP
Trigger: AGGGCGCTCGGATGGACTGCCTAGCTGTGTGCTTCACCTCAAGCCAGCATGGCTGGAAATGAGAACTGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR GCA 72 bp CCTGAAGGTCTATGGAAGAATCCCCTTGGGAGGCTCTaGCTGGACATCTGCCTGGAGGCCTGCTGTGTTCTG +
Preference number: 3 (lower is better)
Translates to: PEGLWKNPLGRL*LDICLEACCVL
Trigger: CAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATAGACCTTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp TCTCCACAGAGGATGTTCCCTGGTTCTTGGAGCTGTTaGCACCTTCCCAGGATCTGGGGTGCACACAGGCAG +
Preference number: 3 (lower is better)
Translates to: SPQRMFPGSWSC*HLPRIWGAHRQ
Trigger: CTGCCTGTGTGCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACATCCTCTGTGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp AGGGGAGGACAGGTGCAGATGAACTGCAGTGGGATCTaGGAGGATCGGTGTCCAGCTGCCCTTTCTGCTGTT +
Preference number: 3 (lower is better)
Translates to: RGGQVQMNCSGI*EDRCPAALSAV
Trigger: AACAGCAGAAAGGGCAGCTGGACACCGATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTGTCCTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp AAGGTCTATGGAAGAATCCCCTTGGGAGGCTCTGCCTaGACATCTGCCTGGAGGCCTGCTGTGTTCTGGGTC +
Preference number: 3 (lower is better)
Translates to: KVYGRIPLGGSA*TSAWRPAVFWV
Trigger: GACCCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATAGACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp CTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTaGAGCTGTTGCCACCTTCCCAGGATCTGGGGTGCA +
Preference number: 3 (lower is better)
Translates to: LCASPQRMFPGS*SCCHLPRIWGA
Trigger: TGCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp TCCTGTCTCTTATTGGGCTTCCTGGGGTGGTCCTGCTaGGAAGCACTTGCAACTGCAGGGCTGGAGTCCTCT +
Preference number: 3 (lower is better)
Translates to: SCLLLGFLGWSC*EALATAGLESS
Trigger: AGAGGACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp CCTCACACCTCCGGTGTTTGCCATTGGTCTCACCTCTaGGCTTCTCCACAGAGGATGTTCCCTGGTTCTTGG +
Preference number: 3 (lower is better)
Translates to: PHTSGVCHWSHL*ASPQRMFPGSW
Trigger: CCAAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGAGGTGTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp CTGGTAGCTTCGCCAAGCTCGCTGGATGACCGCCGCTaGCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCT +
Preference number: 3 (lower is better)
Translates to: LVASPSSLDDRR*LVFPSKQLFPA
Trigger: AGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAGCGAGCTTGGCGAAGCTACCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp GGAGAGGGTGGGCACCCTCTGGGTATTCTCCCACCCTaGCACTTCAGATTTCTATGTGGCTGTGCTCATCCA +
Preference number: 3 (lower is better)
Translates to: GEGGHPLGILPP*HFRFLCGCAHP
Trigger: TGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGGAGAATACCCAGAGGGTGCCCACCCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 72 bp TTCCTCCAAACCTGGAGGAGCAGGGCTGTGCACACTTaGGTACATCTGAGCACTTCTCTGGCTCCAAGCTGC +
Preference number: 3 (lower is better)
Translates to: FLQTWRSRAVHT*VHLSTSLAPSC
Trigger: GCAGCTTGGAGCCAGAGAAGTGCTCAGATGTACCCAAGTGTGCACAGCCCTGCTCCTCCAGGTTTGGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp GTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACTATGGAAGAATCCCCTaGGGAGGCTCTGCCTGGACA +
Preference number: 3 (lower is better)
Translates to: VADEPLDGLFDVLLTEMDYGRIP*GGSAWT
Trigger: TGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATA...GTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp AGAGGGGCCTCTGCAGTGCTCTATGGGTGTTTCACTTaGCTTTCTGGAGGCCGTTCCCTGAAGGTCTATGGA +
Preference number: 3 (lower is better)
Translates to: RGASAVLYGCFT*LSGGRSLKVYG
Trigger: TCCATAGACCTTCAGGGAACGGCCTCCAGAAAGCCAAGTGAAACACCCATAGAGCACTGCAGAGGCCCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp TCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTACAGGAAGAAGGTTGGTTCTTGGAGCTGTaGCCACCTTCCCAGGATCTG +
Preference number: 3 (lower is better)
Translates to: SCFVPSGLSAGAALQEEGWFLEL*PPSQDL
Trigger: CAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCA...ACCTTCTTCCTGTAGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp AGATTTGATGGGATGATGTCCTTTCCCTTCTTGAGAACAACCGTAGATCTGCCTCAGGCAACTTCCCCCTaGGCACTGCCAGGCCGGCTG +
Preference number: 3 (lower is better)
Translates to: RFDGMMSFPFLRTTVDLPQATSP*ALPGRL
Trigger: CAGCCGGCCTGGCAGTGCCAAGGGGGAAGTTGCCTG...AGGCAGATCTACGGTTGTTCTCAAGAAGGGAAAGGACATCATCCCATCAAATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 72 bp CCCTTCTTGAGAACAACCGTAGATCTGCCTGAGCACTaGGTGCCTGGCATACTTTGTGGCCGACGAGCCTTT +
Preference number: 3 (lower is better)
Translates to: PFLRTTVDLPEH*VPGILCGRRAF
Trigger: AAAGGCTCGTCGGCCACAAAGTATGCCAGGCACTCAGTGCTCAGGCAGATCTACGGTTGTTCTCAAGAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 72 bp GTCCTTTCCCTTCTTGAGAACAACCGTAGATCTGCCTaGGCACTGAGTGCCTGGCATACTTTGTGGCCGACG +
Preference number: 3 (lower is better)
Translates to: VLSLLENNRRSA*ALSAWHTLWPT
Trigger: CGTCGGCCACAAAGTATGCCAGGCACTCAGTGCTCAGGCAGATCTACGGTTGTTCTCAAGAAGGGAAAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp TGTCAGGATGAGTGTGGCAGTTCTCATTTCCAGCCATaGTGGCTTGAGGTGAAGCACACAGCTAGGCAGTCC +
Preference number: 3 (lower is better)
Translates to: CQDECGSSHFQP*WLEVKHTARQS
Trigger: GGACTGCCTAGCTGTGTGCTTCACCTCAAGCCAGCATGGCTGGAAATGAGAACTGCCACACTCATCCTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 72 bp CAGGATGAGTGTGGCAGTTCTCATTTCCAGCCATGCTaGCTTGAGGTGAAGCACACAGCTAGGCAGTCCATC +
Preference number: 3 (lower is better)
Translates to: QDECGSSHFQPC*LEVKHTARQSI
Trigger: GATGGACTGCCTAGCTGTGTGCTTCACCTCAAGCCAGCATGGCTGGAAATGAGAACTGCCACACTCATCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 72 bp TACAGGAAGAAGGTGAATATTCATACACTGTCCAGGTaGGGGGCCATGAGCCACGCCAGTCTCTGGAGATGC +
Preference number: 3 (lower is better)
Translates to: YRKKVNIHTLSR*GAMSHASLWRC
Trigger: GCATCTCCAGAGACTGGCGTGGCTCATGGCCCCCCACCTGGACAGTGTATGAATATTCACCTTCTTCCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp CTGAGTGCCTGGCATACTTTGTGGCCGACGAGCCTTTaGATGGACTCTTCGATGTCCTGCTTACTGAGATGG +
Preference number: 3 (lower is better)
Translates to: LSAWHTLWPTSL*MDSSMSCLLRW
Trigger: CCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCACAAAGTATGCCAGGCACTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 72 bp TTTTGGTGCTGTGCTAGCATTGGTGCCACTCAGCAGTaGAAGCCGAGCTTCTGTTCTCTCTGGACCAACCTG +
Preference number: 3 (lower is better)
Translates to: FWCCASIGATQQ*KPSFCSLWTNL
Trigger: CAGGTTGGTCCAGAGAGAACAGAAGCTCGGCTTTCACTGCTGAGTGGCACCAATGCTAGCACAGCACCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR GCA 72 bp ACTTGGGTACATCTGAGCACTTCTCTGGCTCCAAGCTaGTTCAAATGCAGAAGCCGAGACAGGTGCTTCCTG +
Preference number: 3 (lower is better)
Translates to: TWVHLSTSLAPS*FKCRSRDRCFL
Trigger: CAGGAAGCACCTGTCTCGGCTTCTGCATTTGAAGCAGCTTGGAGCCAGAGAAGTGCTCAGATGTACCCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp TTCCGTCGAAACAGCTCTTTCCTGCTTCGTTCCCTCTaGATTATCAGCAGGCGCTGCTCTACAGGAAGAAGG +
Preference number: 3 (lower is better)
Translates to: FRRNSSFLLRSL*IISRRCSTGRR
Trigger: CCTTCTTCCTGTAGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTCGACGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR GCA 72 bp AGAGGGGAAGAGAAGCCTGAGTTGGTTGGTGCATTCTaGTGTAAGCCCTGTCTTGCTGACTTTTGGTGCTGT +
Preference number: 3 (lower is better)
Translates to: RGEEKPELVGAF*CKPCLADFWCC
Trigger: ACAGCACCAAAAGTCAGCAAGACAGGGCTTACAGCAGAATGCACCAACCAACTCAGGCTTCTCTTCCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR GCA 72 bp AGTGTTCAGGAGCAGTGGCTTACAGACTTACATTACTaGTTCAGCGTGTACATCAGTGGCCATCCCCAAGGG +
Preference number: 3 (lower is better)
Translates to: SVQEQWLTDLHY*FSVYISGHPQG
Trigger: CCCTTGGGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTCCTGAACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CAA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGGAAGAGAAGCCTGAGTaGGTTGGTGCATTCTGCTGT +
Preference number: 3 (lower is better)
Translates to: FSVYISGHPQGPSILNALEEKPE*VGAFCC
Trigger: ACAGCAGAATGCACCAACCAACTCAGGCTTCTCTTC...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CAA 90 bp TTTGCCATTGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTTCCTTTGTAGACTGCTaGGATTTTGAAGGCAGCGAT +
Preference number: 3 (lower is better)
Translates to: FAIGLTSALLHRGCSLVLSFVDC*DFEGSD
Trigger: ATCGCTGCCTTCAAAATCCAAGCAGTCTACAAAGGA...AAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR-3UTR CAA 90 bp GTACATCTGAGCACTTCTCTGGCTCCAAGCTGCTTCAAATGCAGAAGCCGAGACTCAGCTTCCTTCCTCTaGTTTTCCTCTTCCCGTTTT +
Preference number: 3 (lower is better)
Translates to: VHLSTSLAPSCFKCRSRDSASFL*FSSSRF
Trigger: AAAACGGGAAGAGGAAAACAAGAGGAAGGAAGCTGA...GTCTCGGCTTCTGCATTTGAAGCAGCTTGGAGCCAGAGAAGTGCTCAGATGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR TCA 72 bp TCGATGTCCTGCTTACTGAGATGGACTTTGGGAATTTaGGTTCCAGTTCTTTCCTCCAAACCTGGAGGAGCA +
Preference number: 3 (lower is better)
Translates to: SMSCLLRWTLGI*VPVLSSKPGGA
Trigger: TGCTCCTCCAGGTTTGGAGGAAAGAACTGGAACTCAAATTCCCAAAGTCCATCTCAGTAAGCAGGACATCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp TGTGTCCAAAGAACCTTCCAAAACAGCAGCACTAGCTaGCAACCAACTGTTCAAATACCTATGCCTTTAGGG +
Preference number: 3 (lower is better)
Translates to: CVQRTFQNSSTS*QPTVQIPMPLG
Trigger: CCCTAAAGGCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTCTTTGGACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CCA 72 bp TTATCATGGAGTAAGCACTGTGCTAGGGTACTTCTATaGCAGTGGGTGTTTGCTGTGGGGATTTACATCTCA +
Preference number: 3 (lower is better)
Translates to: LSWSKHCARVLL*QWVFAVGIYIS
Trigger: TGAGATGTAAATCCCCACAGCAAACACCCACTGCCATAGAAGTACCCTAGCACAGTGCTTACTCCATGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCATGGTACCTCCTGTTaGAAGTTAATTGTTCATGCA +
Preference number: 3 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHHGTSC*KLIVHA
Trigger: TGCATGAACAATTAACTTCAAACAGGAGGTACCATG...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR GCA 72 bp TCGGAAGGCTTTTCTGACCTTGTATCCTTTGTAGACTaGTTGGATTTTGAAGGCAGCGATGTCTTGTATAGC +
Preference number: 3 (lower is better)
Translates to: SEGFSDLVSFVD*LDFEGSDVLYS
Trigger: GCTATACAAGACATCGCTGCCTTCAAAATCCAAGCAGTCTACAAAGGATACAAGGTCAGAAAAGCCTTCCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CCA 72 bp CTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTaGGATAGCCCTTGCTCCAGTTATTCAGGACCCACA +
Preference number: 3 (lower is better)
Translates to: LEEHILHIGNSF*DSPCSSYSGPT
Trigger: TGTGGGTCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR-3UTR CAA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCCAAAAGAAACTGCTTTaGGGGAATGCTACCTATTCC +
Preference number: 3 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCQKKLL*GNATYS
Trigger: GGAATAGGTAGCATTCCCCAAAAGCAGTTTCTTTTG...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 72 bp ATTTTCATTACAGTATGTTCCAGGGAAGTAAAGAGTTaGGGGTGGTTGTTGTGGCCCAGGTTTCCTATCTCA +
Preference number: 3 (lower is better)
Translates to: IFITVCSREVKS*GWLLWPRFPIS
Trigger: TGAGATAGGAAACCTGGGCCACAACAACCACCCTCAACTCTTTACTTCCCTGGAACATACTGTAATGAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 72 bp CAACTTAAAAGAAAGGACTTACTGTATTTGACAGTGTaGGAGGGCACTCTGTTATCATGGAGTAAGCACTGT +
Preference number: 3 (lower is better)
Translates to: QLKRKDLLYLTV*EGTLLSWSKHC
Trigger: ACAGTGCTTACTCCATGATAACAGAGTGCCCTCTCACACTGTCAAATACAGTAAGTCCTTTCTTTTAAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 72 bp AACAAGTCTTTAGGTGCAAATAGTAAAGCGTTCTCATaGGTAAGAGTTTACAGAGAGCAGAATTCCACACTG +
Preference number: 3 (lower is better)
Translates to: NKSLGANSKAFS*VRVYREQNSTL
Trigger: CAGTGTGGAATTCTGCTCTCTGTAAACTCTTACTCATGAGAACGCTTTACTATTTGCACCTAAAGACTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR TCA 72 bp AACAGATCCAACTTAAAAGAAAGGACTTACTGTATTTaGCAGTGTGAGAGGGCACTCTGTTATCATGGAGTA +
Preference number: 3 (lower is better)
Translates to: NRSNLKERTYCI*QCERALCYHGV
Trigger: TACTCCATGATAACAGAGTGCCCTCTCACACTGTCAAATACAGTAAGTCCTTTCTTTTAAGTTGGATCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp CTGGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTGCCATTGGTCTCACCTCCGTACGCAGCACACTaGAGCGGTGTTCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: LALLGPSSHLRCLPLVSPPYAAH*SGVLPA
Trigger: TGCAGGAAGAACACCGCTTCAGTGTGCTGCGTACGG...AGGTGAGACCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGCACTGCCAGGCCGGCTaGACCCAGCTGGGGAGCACC +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTEHCQAG*TQLGST
Trigger: GGTGCTCCCCAGCTGGGTCCAGCCGGCCTGGCAGTG...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CAA 72 bp TCAGGGCTCTGGACTGTGTGGCTAGCAGGTGGCTGTTaGCTAGGGGTTGCGTCCTGCTTGCTGGCCTCATTC +
Preference number: 4 (lower is better)
Translates to: SGLWTVWLAGGC*LGVASCLLASF
Trigger: GAATGAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAGCCACACAGTCCAGAGCCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
3UTR CAA 72 bp CCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTaGGAGCTGTTGCCACCTTCCCAGGATCTGGGGTGC +
Preference number: 4 (lower is better)
Translates to: PLRFSTEDVPWF*ELLPPSQDLGC
Trigger: GCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGTTGCTGGCCTCATTCTaGGGGCTGGGTGGACAGGGG +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTELLASF*GLGGQG
Trigger: CCCCTGTCCACCCAGCCCCCAGAATGAGGCCAGCAA...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCGCTGCCTGGCGCTGCTaGGCCCCTCCTCACACCTCC +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPAAWRC*APPHTS
Trigger: GGAGGTGTGAGGAGGGGCCCAGCAGCGCCAGGCAGC...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GTGTGTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACCAAAGTGCAGAGGTGTaGGGCCCTCGTAGTCTTGCC +
Preference number: 4 (lower is better)
Translates to: VCDGGENSDQHRQLPPWHQSAEV*GPRSLA
Trigger: GGCAAGACTACGAGGGCCGCACACCTCTGCACTTTG...GTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGGCCGGCCTGACCCAGTaGACAAGGGCTGCCTGGCGC +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALAGLTQ*TRAAWR
Trigger: GCGCCAGGCAGCCCTTGTGCACTGGGTCAGGCCGGC...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CGAAACAGCTCTTTCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTTTCACGGTGCTGACGTaGCCAGAAAGGGCAGCGGCG +
Preference number: 4 (lower is better)
Translates to: RNSSFLLRSLWIISRRCSFTVLT*PERAAA
Trigger: CGCCGCTGCCCTTTCTGGCCACGTCAGCACCGTGAA...AGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGGCCTGGACATCTGCCTaGAGGCCTGCTGTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTEAWTSA*RPAVFW
Trigger: CCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGC...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGAAGCACCTCTGGGCCTaGCTGCCCTGTCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTEKHLWA*LPCPVS
Trigger: AGAGACAGGACAGGGCAGCCAGGCCCAGAGGTGCTT...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGATGGACCACTTGGGGCTCCTGTaGCGAGTGCTCAGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: VADEPLDGLFDVLLTEMDHLGLL*RVLRCK
Trigger: TTTGCACCTGAGCACTCGGCACAGGAGCCCCAAGTG...GTCCATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGCTCTGCCTGGACATCTaGCTGGAGGCCTGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTELCLDI*LEACCV
Trigger: AACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAG...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGTTGGGCTTCCTGGGGTaGTCCTGCTGGGAAGCACTT +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTELGFLG*SCWEAL
Trigger: AAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAA...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CAA 72 bp TTCTCCACAGAGGATGTTCCCTGGTTCTTGGAGCTGTaGCCACCTTCCCAGGATCTGGGGTGCACACAGGCA +
Preference number: 4 (lower is better)
Translates to: FSTEDVPWFLEL*PPSQDLGCTQA
Trigger: TGCCTGTGTGCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACATCCTCTGTGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR TCA 90 bp CTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGATAACTTCACGGTGCTaGCGTGGCCAGAAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: LDDRRCLVFPSKQLFPASITSRC*RGQKGQ
Trigger: CTGCCCTTTCTGGCCACGTCAGCACCGTGAAGTTAT...CGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp TTGGGCTTCCTGGGGTGGTCCTGCTGGGAAGCACTTGCAACTGCAGGGCTGGAGTTGGATGTTGGGGTCTaGATTATTCTCCATGAGCAC +
Preference number: 4 (lower is better)
Translates to: LGFLGWSCWEALATAGLELDVGV*IILHEH
Trigger: GTGCTCATGGAGAATAATGCAGACCCCAACATCCAA...CTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCTCCCAGGATCTGGGGTaGACACAGGCAGAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPSQDLG*TQAEGP
Trigger: AGGCCCCTCTGCCTGTGTGCACCCCAGATCCTGGGA...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGTGCCTGAGCACTGAGTaGCTGGCATACTTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTECLSTE*LAYFVA
Trigger: GGCCACAAAGTATGCCAGGCACTCAGTGCTCAGGCA...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGCTGCTTCGTTCCCTCTaGATTATCAGCAGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTELLRSL*IISRRC
Trigger: GCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAG...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGGCCTGGCATACTTTGTaGCCGACGAGCCTTTGGATG +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTEAWHTL*PTSLWM
Trigger: CATCCAAAGGCTCGTCGGCCACAAAGTATGCCAGGC...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CTGGCGCTGCTGGGCCCCTCCTCACACCTCCGGTGTTTGCCATTGGTCTCACCTTGTACCTCTTTGTCTTaGATGTTGGGGTCTGCATTA +
Preference number: 4 (lower is better)
Translates to: LALLGPSSHLRCLPLVSPCTSLS*MLGSAL
Trigger: TAATGCAGACCCCAACATCCAAGACAAAGAGGTACA...AGGTGAGACCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGGGGTTGCGTCCTGCTTaGTGGCCTCATTCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALGLRPA*WPHSGG
Trigger: GCCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCC...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACCAGTGCACAAGGGCTaGCTGGCGCTGCTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGPVHKG*LALLGP
Trigger: GGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCACTGG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTTCACGGTGCTGACGTaGCCAGAAAGGGCAGCGGCG +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALFTVLT*PERAAA
Trigger: CGCCGCTGCCCTTTCTGGCCACGTCAGCACCGTGAA...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GCAGGTGGCTGTTTGCTAGGGGTTGCGTCCTGCTTGCTGGCCTCATTCTGGGGGTTTTCTATCAGTATCTaGCAGACGTCAGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: AGGCLLGVASCLLASFWGFSISI*QTSAFP
Trigger: GGGAAATGCTGACGTCTGCCAGATACTGATAGAAAA...CCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGTGCACAAGGGCTGCCTaGCGCTGCTGGGCCCCTCCT +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLCTRAA*RCWAPP
Trigger: AGGAGGGGCCCAGCAGCGCCAGGCAGCCCTTGTGCA...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGAGTAAGGCTGCCCAGTaGAGTGGGGTTCGAAATAAG +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTESKAAQ*SGVRNK
Trigger: CTTATTTCGAACCCCACTTCACTGGGCAGCCTTACT...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATGCCAAGCTCGCTGGATaGCCGCCGCTGCCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHAKLAG*PPLPCF
Trigger: AAAACAAGGCAGCGGCGGTCATCCAGCGAGCTTGGC...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCACTTGGGGCTCCTGTaGCGAGTGCTCAGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPHLGLL*RVLRCK
Trigger: TTTGCACCTGAGCACTCGGCACAGGAGCCCCAAGTG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCTGGGTGCGTCTTTTCTaGGAAGCACCTCTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPWVRLF*EAPLGL
Trigger: CAGGCCCAGAGGTGCTTCGCAGAAAAGACGCACCCA...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATGGCTGCCCAGTGGAGTaGGATCTTGCCTTCCACGTC +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHGCPVE*DLAFHV
Trigger: GACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCC...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCCTCATTCTGGGGGCTaGGTGGACAGGGGAGGACAG +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCPHSGG*VDRGGQ
Trigger: CTGTCCTCCCCTGTCCACCCAGCCCCCAGAATGAGG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTTGCGTCCTGCTTGCTaGCCTCATTCTGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHLRPAC*PHSGGW
Trigger: CCAGCCCCCAGAATGAGGCCAGCAAGCAGGACGCAA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCTCTGCGAAGCACCTCTaGGCCTGGCTGCCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCSAKHL*AWLPCP
Trigger: AGGACAGGGCAGCCAGGCCCAGAGGTGCTTCGCAGA...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CAA 72 bp ACTGAGTGCCTGGCATACTTTGTGGCCGACGAGCCTTaGGATGGACTCTTCGATGTCCTGCTTACTGAGATG +
Preference number: 4 (lower is better)
Translates to: TECLAYFVADEP*DGLFDVLLTEM
Trigger: CATCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCACAAAGTATGCCAGGCACTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR TCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATGAGACAGGTGCTTCCTaGGCTGGTAGCTTCGCCAAG +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHETGAS*AGSFAK
Trigger: CTTGGCGAAGCTACCAGCTCAGGAAGCACCTGTCTC...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACTGCCTTTATCTCCATTAACTaGAGCGGCATGAACCTGAGA +
Preference number: 4 (lower is better)
Translates to: VTVERTLISTGNFPLGTAFISIN*SGMNLR
Trigger: TCTCAGGTTCATGCCGCTGCAGTTAATGGAGATAAA...GGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGGTTGACATCTGCTCCTaGTTTGAGAAGAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTEVDICS*FEKSIC
Trigger: GCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAAC...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGCGCTCACCCGTTTTGTTGACATCTaGTCCTGCTTTGAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: DGQGTMFQHELDHLMALTRFVDI*SCFEKS
Trigger: GCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACG...GGTGAGCGCCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp GTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACTGCCATTGCCTTTTCCTGCTaGCCACATGAAAGATGTTCT +
Preference number: 4 (lower is better)
Translates to: VTVERTLISTGNFPLGTAIAFSC*PHERCS
Trigger: AGAACATCTTTCATGTGGGCAGCAGGAAAAGGCAAT...GGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCAGGCAGAGGGGCCTCTaGAGTGCTCTATGGGTGTTT +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPRQRGL*SALWVF
Trigger: AAACACCCATAGAGCACTGCAGAGGCCCCTCTGCCT...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCGGTTCTTGGAGCTGTTaGCACCTTCCCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPGSWSC*HLPRIW
Trigger: CCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACC...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCTGCTGGGAAGCACTTaGAACTGCAGGGCTGGAGTC +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHLLGST*NCRAGV
Trigger: GACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAG...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGGAAGAGCTAGACACTTaGGGCTCCTGTGCCGAGTGC +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALEELDT*GSCAEC
Trigger: GCACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTC...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTCGGGTCTTTGTGGTTaGCTGCCCAGTGGAGTGGGA +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHSGLCG*LPSGVG
Trigger: TCCCACTCCACTGGGCAGCCAACCACAAAGACCCGA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTCTGGGTCAGGGCTCTaGACTGTGTGGCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALSGSGL*TVWLAG
Trigger: ACCTGCTAGCCACACAGTCCAGAGCCCTGACCCAGA...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGAGGCCTGCTGTGTTCTaGGTCAGGGCTCTGGACTGT +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALRPAVF*VRALDC
Trigger: ACAGTCCAGAGCCCTGACCCAGAACACAGCAGGCCT...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACCGGCTGGACCCAGCTaGGGAGCACCTGTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGPAGPS*GAPVSE
Trigger: CTCAGAGACAGGTGCTCCCCAGCTGGGTCCAGCCGG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAAGGCAACTTCCCCCTTaGCACTGCCAGGCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGRQLPP*HCQAGW
Trigger: CCAGCCGGCCTGGCAGTGCCAAGGGGGAAGTTGCCT...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGCATACACTGTCCAGGTaGGGGGCCATGAGCCACGCC +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLHTLSR*GAMSHA
Trigger: GGCGTGGCTCATGGCCCCCCACCTGGACAGTGTATG...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp GATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGTTCCAGAGTTTCCAACAATaGGTCTCTGAAGGGCACCTT +
Preference number: 4 (lower is better)
Translates to: DDRRCLVFPSKQLFPASFQSFQQ*VSEGHL
Trigger: AAGGTGCCCTTCAGAGACTCATTGTTGGAAACTCTG...GAACGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR TCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCCGTACGCAGCACACTaGAGCGGTGTTCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCPYAAH*SGVLPA
Trigger: TGCAGGAAGAACACCGCTTCAGTGTGCTGCGTACGG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGCTCGGAAGGCTTTTCTaGCCTTGTATCCTTTGTAGA +
Preference number: 4 (lower is better)
Translates to: PTLALQISMWLCSSSPTELGRLF*PCILCR
Trigger: TCTACAAAGGATACAAGGTCAGAAAAGCCTTCCGAG...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCAAAGTGCAGAGGTGTaGGGCCCTCGTAGTCTTGCC +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCQSAEV*GPRSLA
Trigger: GGCAAGACTACGAGGGCCGCACACCTCTGCACTTTG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGGTCATTGCCTTTTCCTaGTGCCCACATGAAAGATGT +
Preference number: 4 (lower is better)
Translates to: LDDRRCLVFPSKQLFPASVIAFS*CPHERC
Trigger: ACATCTTTCATGTGGGCAGCAGGAAAAGGCAATGAC...CGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGACCTCTGGGCCTGGCTaGCCTGTCCTGTCTCTTATT +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALTSGPG*PVLSLI
Trigger: AATAAGAGACAGGACAGGGCAGCCAGGCCCAGAGGT...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCTGGTTGGCTGCCCAGTaGAGTGGGATCTTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCWLAAQ*SGILPS
Trigger: GGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCA...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CGAAACAGCTCTTTCCTGCTTCGTTCCCTCTGGATTATCAGCAGGCGCTGCTCTACAGGCTCGGAACAGTaGAGTATGTTTCATGACGTC +
Preference number: 4 (lower is better)
Translates to: RNSSFLLRSLWIISRRCSTGSEQ*SMFHDV
Trigger: GACGTCATGAAACATACTCCACTGTTCCGAGCCTGT...AGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCGGGCTCTGGACTGTGTaGCTAGCAGGTGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCGLWTV*LAGGCL
Trigger: CAAACAGCCACCTGCTAGCCACACAGTCCAGAGCCC...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCTGGGGTGGTCCTGCTaGGAAGCACTTGCAACTGCA +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCLGWSC*EALATA
Trigger: TGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CAA 72 bp CTGAGTTGGTTGGTGCATTCTGCTGTAAGCCCTGTCTaGCTGACTTTTGGTGCTGTGCTAGCATTGGTGCCA +
Preference number: 4 (lower is better)
Translates to: LSWLVHSAVSPV*LTFGAVLALVP
Trigger: TGGCACCAATGCTAGCACAGCACCAAAAGTCAGCAAGACAGGGCTTACAGCAGAATGCACCAACCAACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCATAACTTCACGGTGCTaGCGTGGCCAGAAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCITSRC*RGQKGQ
Trigger: CTGCCCTTTCTGGCCACGTCAGCACCGTGAAGTTAT...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp CTGTTCGTGCTTCATGAGGAGGTTCTTCCGGTCTCGGAAGGCTTTTCTGACCTTGTGGAGTATGTTTCATaGCGTCAGTGGCATCCACTT +
Preference number: 4 (lower is better)
Translates to: LFVLHEEVLPVSEGFSDLVEYVS*RQWHPL
Trigger: AAGTGGATGCCACTGACGTCATGAAACATACTCCAC...AAGGTCAGAAAAGCCTTCCGAGACCGGAAGAACCTCCTCATGAAGCACGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR TCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCACACTTGGGTACATCTaGGCACTTCTCTGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPTLGYI*ALLWLQ
Trigger: TTGGAGCCAGAGAAGTGCTCAGATGTACCCAAGTGT...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCAACTGTTCACTGAGCTaGGATGAAGCACAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCNCSLS*DEAQRG
Trigger: CCCCCGCTGTGCTTCATCTCAGCTCAGTGAACAGTT...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp TTTGCCATTGGTCTCACCTCTGCGCTTCTCCACAGAGGATGTTCCCTGGTTCTTTTTGAGAAGAGCATCTaGACAGTCCACTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: FAIGLTSALLHRGCSLVLFEKSI*TVHSVC
Trigger: GCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAA...AAGAACCAGGGAACATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCAGTGGAGTGGGATCTTaGCTTCCACGTCGGGAATCC +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCSGVGS*LPRRES
Trigger: GGATTCCCGACGTGGAAGGCAAGATCCCACTCCACT...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGCGCTCACCTTCACTGAAGGATGCTaGAAAAACACTTTGACCGTT +
Preference number: 4 (lower is better)
Translates to: DGQGTMFQHELDHLMALTFTEGC*KNTLTV
Trigger: AACGGTCAAAGTGTTTTTGCAGCATCCTTCAGTGAA...GGTGAGCGCCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTCCAGCTGCCCTTTCTaGTGTTCAGCTTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHSSCPF*CSASFL
Trigger: GAGGAAGGAAGCTGAACAGCAGAAAGGGCAGCTGGA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCTGGATGACCGCCGCTaGCTTGTTTTTCCGTCGAAA +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHLDDRR*LVFPSK
Trigger: TTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp AAAGACAATCTGAAGTCAAAGGATCATGGGAAAATTCATCCCATGCTGCCCCCAGAAGAGCTAGACACTTaGGGCTCCTGTGCCGAGTGC +
Preference number: 4 (lower is better)
Translates to: KDNLKSKDHGKIHPMLPPEELDT*GSCAEC
Trigger: GCACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTC...TGGGGGCAGCATGGGATGAATTTTCCCATGATCCTTTGACTTCAGATTGTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp CTGGATGACCGCCGCTGCCTTGTTTTTCCGTCGAAACAGCTCTTTCCTGCTTCGCTTTGTCTTGGATGTTaGGGTCTGCATTATTCTCCA +
Preference number: 4 (lower is better)
Translates to: LDDRRCLVFPSKQLFPASLCLGC*GLHYSP
Trigger: TGGAGAATAATGCAGACCCCAACATCCAAGACAAAG...CGAAGCAGGAAAGAGCTGTTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTGTCCTGTCTCTTATTaGGCTTCCTGGGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALCPVSY*ASWGGP
Trigger: AGGACCACCCCAGGAAGCCCAATAAGAGACAGGACA...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCTTTGAGAAGAGCATCTaGACAGTCCACTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPFEKSI*TVHSVC
Trigger: GCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAA...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp ATAGCTGCGATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGTCTTCTAGATCCTTCTaGATCCAGTTTGCTCTTCGA +
Preference number: 4 (lower is better)
Translates to: IAAMDRAPCSSMNWITSWSSRSF*IQFALR
Trigger: TCGAAGAGCAAACTGGATGCAGAAGGATCTAGAAGA...CCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp ATAGCTGCGATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGCGTAAGACGTTATGTTaGAGCTTTCATAGGAGGTCA +
Preference number: 4 (lower is better)
Translates to: IAAMDRAPCSSMNWITSWRKTLC*SFHRRS
Trigger: TGACCTCCTATGAAAGCTGCAACATAACGTCTTACG...CCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACTGTTTGCTAGGGGTTaGGTCCTGCTTGCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGLFARG*VLLAGL
Trigger: GAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCCACACCTCCGGTGTTTaGCATTGGTCTCACCTCTGC +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCHTSGV*HWSHLC
Trigger: GCAGAGGTGAGACCAATGGCAAACACCGGAGGTGTG...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCCCAAGCTGCTTCAAATaGAGAAGCCGAGACAGGTGC +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCPSCFK*RSRDRC
Trigger: GCACCTGTCTCGGCTTCTGCATTTGAAGCAGCTTGG...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCACACAGTACATAAGTaGTGTTCTCCCAAACCGGTC +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPHTVHK*CSPKPV
Trigger: GACCGGTTTGGGAGAACACCACTTATGTACTGTGTG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAGCACTCGGGTCTTTGTaGTTGGCTGCCCAGTGGAGT +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGALGSL*LAAQWS
Trigger: ACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGC...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATAACTGGATCACCTCATaGCGCTCACCAAGCAATGCA +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHNWITS*RSPSNA
Trigger: TGCATTGCTTGGTGAGCGCCATGAGGTGATCCAGTT...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGTGTGTGGCTAGCAGGTaGCTGTTTGCTAGGGGTTGC +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLCVASR*LFARGC
Trigger: GCAACCCCTAGCAAACAGCCACCTGCTAGCCACACA...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTTTCACTTGGCTTTCTaGAGGCCGTTCCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHFHLAF*RPFPEG
Trigger: ACCTTCAGGGAACGGCCTCCAGAAAGCCAAGTGAAA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
3UTR CAA 72 bp TTTGTAGACTGCTTGGATTTTGAAGGCAGCGATGTCTaGTATAGCTGCGATGGACAGGGCACCATGTTCCAG +
Preference number: 4 (lower is better)
Translates to: FVDCLDFEGSDV*YSCDGQGTMFQ
Trigger: CTGGAACATGGTGCCCTGTCCATCGCAGCTATACAAGACATCGCTGCCTTCAAAATCCAAGCAGTCTACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR TCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCGGTCTTCTTTGTCTCTaGGAGCAGAGTTTCCAACAA +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPGLLCL*EQSFQQ
Trigger: TTGTTGGAAACTCTGCTCTCAGAGACAAAGAAGACC...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp ACTTTGTGGCCGACGAGCCTTTGGATGGACTCTTCGATGTCCTGCTTACTGAGAAGAATCATCCTTCACTaGAGGATGCTGCAAAAACAC +
Preference number: 4 (lower is better)
Translates to: TLWPTSLWMDSSMSCLLRRIILH*RMLQKH
Trigger: GTGTTTTTGCAGCATCCTTCAGTGAAGGATGATTCT...TCTCAGTAAGCAGGACATCGAAGAGTCCATCCAAAGGCTCGTCGGCCACAAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCGTTTTGTTGACATCTaGTCCTGCTTTGAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPRFVDI*SCFEKS
Trigger: GCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCGTCTTTGTGGTTGGCTaGCCAGTGGAGTGGGATCTT +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCVFVVG*PVEWDL
Trigger: AAGATCCCACTCCACTGGGCAGCCAACCACAAAGAC...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGCGTCCCTCTTTGTCTTaGATGTTGGGGTCTGCATTA +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALRPSLS*MLGSAL
Trigger: TAATGCAGACCCCAACATCCAAGACAAAGAGGGACG...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAGCAGATGAACTGCAGTaGGATCTGGGAGGATCGGTG +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGADELQ*DLGGSV
Trigger: CACCGATCCTCCCAGATCCCACTGCAGTTCATCTGC...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCTTCCCTGAAGGTCTATaGAAGAATCCCCTTGGGAGG +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCFPEGL*KNPLGR
Trigger: CCTCCCAAGGGGATTCTTCCATAGACCTTCAGGGAA...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCTATGGGTGTTTCACTTaGCTTTCTGGAGGCCGTTCC +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCYGCFT*LSGGRS
Trigger: GGAACGGCCTCCAGAAAGCCAAGTGAAACACCCATA...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCATGTTCCCTGGTTCTTaGAGCTGTTGCCACCTTCCC +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCMFPGS*SCCHLP
Trigger: GGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACAT...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCGGTCACCTTGCTTCTTaGTGTGTGACGGTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCGHLAS*CVTVER
Trigger: TCTCTCCACCGTCACACACCAAGAAGCAAGGTGACC...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCTATAAGCTTGTCCTaGGTCACCTTGCTTCTTGGT +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHPISLS*VTLLLG
Trigger: ACCAAGAAGCAAGGTGACCCAGGACAAGCTTATAGG...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCGATGTCCTGCTTACTaGGATGGACTTTGGGAATTT +
Preference number: 4 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHRCPAY*DGLWEF
Trigger: AAATTCCCAAAGTCCATCTCAGTAAGCAGGACATCG...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGATACATCTCACTGTGTaGACGGCACTCGGGTCTTTG +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLIHLTV*TALGSL
Trigger: CAAAGACCCGAGTGCCGTGCACACAGTGAGATGTAT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGGTCATTGCCTTTTCCTaGTGCCCACATGAAAGATGT +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALVIAFS*CPHERC
Trigger: ACATCTTTCATGTGGGCAGCAGGAAAAGGCAATGAC...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCGCGCTCACCAAGCAATaGATAATCAAGGGGTGTGTA +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCALTKQ*IIKGCV
Trigger: TACACACCCCTTGATTATGCATTGCTTGGTGAGCGC...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGATGTCTTGTATAGCTaGGATGGACAGGGCACCATG +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLDVLYS*DGQGTM
Trigger: CATGGTGCCCTGTCCATCGCAGCTATACAAGACATC...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACAGGTGCAGATGAACTaGAGTGGGATCTGGGAGGAT +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGQVQMN*SGIWED
Trigger: ATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAGAGGGGCCTCTGCAGTaGTCTATGGGTGTTTCACTT +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGEGPLQ*SMGVSL
Trigger: AAGTGAAACACCCATAGAGCACTGCAGAGGCCCCTC...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGATCCGGTGTTTGCCATTaGTCTCACCTCTGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGSGVCH*SHLCAS
Trigger: AGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGA...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCCAGAGTTTCCAACAATaGGTCTCTGAAGGGCACCTT +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCQSFQQ*VSEGHL
Trigger: AAGGTGCCCTTCAGAGACTCATTGTTGGAAACTCTG...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTTTATCTCCATTAACTaGAGCGGCATGAACCTGAGA +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALFISIN*SGMNLR
Trigger: TCTCAGGTTCATGCCGCTGCAGTTAATGGAGATAAA...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGATTTCCCTTTTGAGCTaGAAGGTGGAGGGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLISLLS*KVEGCS
Trigger: AGAACAGCCCTCCACCTTGCAGCTCAAAAGGGAAAT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGCGTAAGACGTTATGTTaGAGCTTTCATAGGAGGTCA +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALRKTLC*SFHRRS
Trigger: TGACCTCCTATGAAAGCTGCAACATAACGTCTTACG...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCGAAACAGCTCTTTCCTaGTTCGTTCCCTCTGGATTA +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCETALS*FVPSGL
Trigger: TAATCCAGAGGGAACGAAGCAGGAAAGAGCTGTTTC...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCTCAAGATGTATAGACTaGAAACTGTTCACTGAGCTG +
Preference number: 4 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPSRCID*KLFTEL
Trigger: CAGCTCAGTGAACAGTTTGCAGTCTATACATCTTGA...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp AGATTTGATGGGATGATGTCCTTTCCCTTCTTGAGAACAACCGTAGATCTGCCTCACACAGTACATAAGTaGTGTTCTCCCAAACCGGTC +
Preference number: 4 (lower is better)
Translates to: RFDGMMSFPFLRTTVDLPHTVHK*CSPKPV
Trigger: GACCGGTTTGGGAGAACACCACTTATGTACTGTGTG...AGGCAGATCTACGGTTGTTCTCAAGAAGGGAAAGGACATCATCCCATCAAATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGACAGGCTCGGAACAGTaGAGTATGTTTCATGACGTC +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLTGSEQ*SMFHDV
Trigger: GACGTCATGAAACATACTCCACTGTTCCGAGCCTGT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGATGTTCCAGCATGAACTaGATCACCTCATGGCGCTCA +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGCSSMN*ITSWRS
Trigger: TGAGCGCCATGAGGTGATCCAGTTCATGCTGGAACA...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTGGACTTTGGGAATTTaGGTTCCAGTTCTTTCCTCC +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCWTLGI*VPVLSS
Trigger: GGAGGAAAGAACTGGAACTCAAATTCCCAAAGTCCA...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAAACCGTAGATCTGCCTaGGCACTGAGTGCCTGGCAT +
Preference number: 4 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTNRRSA*ALSAWH
Trigger: ATGCCAGGCACTCAGTGCTCAGGCAGATCTACGGTT...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGGTAAGAGAACTTCTTTaGTCTTCCACTGTTGTCAAG +
Preference number: 4 (lower is better)
Translates to: FSVYISGHPQGPSILNALVRELL*SSTVVK
Trigger: CTTGACAACAGTGGAAGATCAAAGAAGTTCTCTTAC...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp GTCTCGGAAGGCTTTTCTGACCTTGTATCCTTTGTAGACTGCTTGGATTTTGAAATTTCCCTTTTGAGCTaGAAGGTGGAGGGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: VSEGFSDLVSFVDCLDFEISLLS*KVEGCS
Trigger: AGAACAGCCCTCCACCTTGCAGCTCAAAAGGGAAAT...TTCAAAATCCAAGCAGTCTACAAAGGATACAAGGTCAGAAAAGCCTTCCGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR GCA 90 bp GAACCTTCCAAAACAGCAGCACTAGCTGGCAACCAACTGTTCAAATACCTATGCTCTTCTAGATCCTTCTaGATCCAGTTTGCTCTTCGA +
Preference number: 4 (lower is better)
Translates to: EPSKTAALAGNQLFKYLCSSRSF*IQFALR
Trigger: TCGAAGAGCAAACTGGATGCAGAAGGATCTAGAAGA...GCATAGGTATTTGAACAGTTGGTTGCCAGCTAGTGCTGCTGTTTTGGAAGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTTGGATGTTGGGGTCTaGATTATTCTCCATGAGCAC +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCLDVGV*IILHEH
Trigger: GTGCTCATGGAGAATAATGCAGACCCCAACATCCAA...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAGCCAGTCTCTGGAGATaGACAGATGTCCTCATAAAG +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGASLWR*TDVLIK
Trigger: CTTTATGAGGACATCTGTGCATCTCCAGAGACTGGC...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACATCTTTCCTCCAAACCTaGAGGAGCAGGGCTGTGCAC +
Preference number: 4 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTSFLQT*RSRAVH
Trigger: GTGCACAGCCCTGCTCCTCCAGGTTTGGAGGAAAGA...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp GTCTCGGAAGGCTTTTCTGACCTTGTATCCTTTGTAGACTGCTTGGATTTTGAAGGTCTTCTTTGTCTCTaGGAGCAGAGTTTCCAACAA +
Preference number: 4 (lower is better)
Translates to: VSEGFSDLVSFVDCLDFEGLLCL*EQSFQQ
Trigger: TTGTTGGAAACTCTGCTCTCAGAGACAAAGAAGACC...TTCAAAATCCAAGCAGTCTACAAAGGATACAAGGTCAGAAAAGCCTTCCGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR TCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGAGAATCATCCTTCACTaGAGGATGCTGCAAAAACAC +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLRIILH*RMLQKH
Trigger: GTGTTTTTGCAGCATCCTTCAGTGAAGGATGATTCT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCGTATCCTTTGTAGACTaGTTGGATTTTGAAGGCAGC +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCVSFVD*LDFEGS
Trigger: GCTGCCTTCAAAATCCAAGCAGTCTACAAAGGATAC...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACACATTGGTCTCACCTCTaGGCTTCTCCACAGAGGATG +
Preference number: 4 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTHWSHL*ASPQRM
Trigger: CATCCTCTGTGGAGAAGCGCAGAGGTGAGACCAATG...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACATGTCCTGGGTCACCTTaGTTCTTGGTGTGTGACGGT +
Preference number: 4 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTCPGSP*FLVCDG
Trigger: ACCGTCACACACCAAGAAGCAAGGTGACCCAGGACA...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTTTTCTATCAGTATCTaGCAGACGTCAGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCFSISI*QTSAFP
Trigger: GGGAAATGCTGACGTCTGCCAGATACTGATAGAAAA...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGCTTTGTCTTGGATGTTaGGGTCTGCATTATTCTCCA +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLLCLGC*GLHYSP
Trigger: TGGAGAATAATGCAGACCCCAACATCCAAGACAAAG...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGTTCACTGAAGGATGCTaGAAAAACACTTTGACCGTT +
Preference number: 4 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLFTEGC*KNTLTV
Trigger: AACGGTCAAAGTGTTTTTGCAGCATCCTTCAGTGAA...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR GCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAATTGCCTTTTCCTGCTaGCCACATGAAAGATGTTCT +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGIAFSC*PHERCS
Trigger: AGAACATCTTTCATGTGGGCAGCAGGAAAAGGCAAT...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAGTGGAGTATGTTTCATaGCGTCAGTGGCATCCACTT +
Preference number: 4 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTVEYVS*RQWHPL
Trigger: AAGTGGATGCCACTGACGTCATGAAACATACTCCAC...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGATCTACAGGAAGAAGGTaGATATTCATACACTGTCCA +
Preference number: 4 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGSTGRR*IFIHCP
Trigger: TGGACAGTGTATGAATATTCACCTTCTTCCTGTAGA...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR TCA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAAGACTGCTTGGATTTTaGAGGCAGCGATGTCTTGTA +
Preference number: 4 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTRLLGF*RQRCLV
Trigger: TACAAGACATCGCTGCCTTCAAAATCCAAGCAGTCT...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 90 bp TGTGTGCACGGCACTCGGGTCTTTGTGGTTGGCTGCCCAGTGGAGTaGGATCTTGCCTTCCACGTCGGGAATCCCGATGTTGGAGTCGTG +
Preference number: 5 (lower is better)
Translates to: CVHGTRVFVVGCPVE*DLAFHVGNPDVGVV
Trigger: CACGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 90 bp CTCACTGTGTGCACGGCACTCGGGTCTTTGTGGTTGGCTGCCCAGTaGAGTGGGATCTTGCCTTCCACGTCGGGAATCCCGATGTTGGAG +
Preference number: 5 (lower is better)
Translates to: LTVCTALGSLWLAAQ*SGILPSTSGIPMLE
Trigger: CTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 90 bp GCGTCCAGGATACATCTCACTGTGTGCACGGCACTCGGGTCTTTGTaGTTGGCTGCCCAGTGGAGTGGGATCTTGCCTTCCACGTCGGGA +
Preference number: 5 (lower is better)
Translates to: ASRIHLTVCTALGSL*LAAQWSGILPSTSG
Trigger: TCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCTGGACGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 90 bp AGTAAAGACTCTGTCGGGGCAGCGTCCAGGATACATCTCACTGTGTaGACGGCACTCGGGTCTTTGTGGTTGGCTGCCCAGTGGAGTGGG +
Preference number: 5 (lower is better)
Translates to: SKDSVGAASRIHLTV*TALGSLWLAAQWSG
Trigger: CCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCTGGACGCTGCCCCGACAGAGTCTTTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 90 bp CCAGGATACATCTCACTGTGTGCACGGCACTCGGGTCTTTGTGGTTaGCTGCCCAGTGGAGTGGGATCTTGCCTTCCACGTCGGGAATCC +
Preference number: 5 (lower is better)
Translates to: PGYISLCARHSGLCG*LPSGVGSCLPRRES
Trigger: GGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TTGGGCTTCCTGGGGTGGTCCTGCTGGGAAGCACTTGCAACTGCAGGGCTGGAGCGGCTATGGTCCGTTTaGTTGACATCTGCTCCTGCT +
Preference number: 5 (lower is better)
Translates to: LGFLGWSCWEALATAGLERLWSV*LTSAPA
Trigger: AGCAGGAGCAGATGTCAACAAAACGGACCATAGCCG...CTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGGACCACCCCAGGAAGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS GCA 90 bp GATACATCTCACTGTGTGCACGGCACTCGGGTCTTTGTGGTTGGCTaGCCAGTGGAGTGGGATCTTGCCTTCCACGTCGGGAATCCCGAT +
Preference number: 5 (lower is better)
Translates to: DTSHCVHGTRVFVVG*PVEWDLAFHVGNPD
Trigger: ATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 90 bp CCACCACCGTTAGGTTTCCATCAGCGACAGCAAAGTGCAGAGGTGTaGGGCCCTCGTAGTCTTGCCAGTTCAGTAAAGACTCTGTCGGGG +
Preference number: 5 (lower is better)
Translates to: PPPLGFHQRQQSAEV*GPRSLASSVKTLSG
Trigger: CCCCGACAGAGTCTTTACTGAACTGGCAAGACTACGAGGGCCGCACACCTCTGCACTTTGCTGTCGCTGATGGAAACCTAACGGTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGCTGTCCTGTCTCTTATaGGGCTTCCTGGGGTGGTCC +
Preference number: 5 (lower is better)
Translates to: PTLALQISMWLCSSSPTELSCLL*GFLGWS
Trigger: GGACCACCCCAGGAAGCCCAATAAGAGACAGGACAG...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp GATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGCGCTCACCAGCACAGCCATACAGTaGATGTACCCTCCGTACGCA +
Preference number: 5 (lower is better)
Translates to: DGQGTMFQHELDHLMALTSTAIQ*MYPPYA
Trigger: TGCGTACGGAGGGTACATCAACTGTATGGCTGTGCT...GGTGAGCGCCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATGGGGTTGCGTCCTGCTaGCTGGCCTCATTCTGGGGG +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHGVASC*LASFWG
Trigger: CCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCCC...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGACGGCACTCGGGTCTTaGTGGTTGGCTGCCCAGTGG +
Preference number: 5 (lower is better)
Translates to: FSVYISGHPQGPSILNALTALGS*WLAAQW
Trigger: CCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGT...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCTAGCAGGTGGCTGTTaGCTAGGGGTTGCGTCCTGC +
Preference number: 5 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPLAGGC*LGVASC
Trigger: GCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp GTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCCCCCTTGGCACTGCCGTGTACCTCTTTGTCTaGGATGTTGGGGTCTGCATT +
Preference number: 5 (lower is better)
Translates to: VTVERTLISTGNFPLGTAVYLFV*DVGVCI
Trigger: AATGCAGACCCCAACATCCAAGACAAAGAGGTACAC...GGCAGTGCCAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS GCA 90 bp GAGGGCTGTTCTCCGGCTATGGTCCGTTTTGTTGACATCTGCTCCTaGTTTGAGAAGAGCATCTGCACAGTCCACTCTGTCTGCCAACAC +
Preference number: 5 (lower is better)
Translates to: EGCSPAMVRFVDICS*FEKSICTVHSVCQH
Trigger: GTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACGGACCATAGCCGGAGAACAGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 90 bp AAGGTGGAGGGCTGTTCTCCGGCTATGGTCCGTTTTGTTGACATCTaGTCCTGCTTTGAGAAGAGCATCTGCACAGTCCACTCTGTCTGC +
Preference number: 5 (lower is better)
Translates to: KVEGCSPAMVRFVDI*SCFEKSICTVHSVC
Trigger: GCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACGGACCATAGCCGGAGAACAGCCCTCCACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 90 bp GGGGCCATAAACTTCAGCAGAAGAGCTAGACACTTGGGGCTCCTGTaGCGAGTGCTCAGGTGCAAAGGTGTCATCTCTTCTAGATCCTTC +
Preference number: 5 (lower is better)
Translates to: GAINFSRRARHLGLL*RVLRCKGVISSRSF
Trigger: GAAGGATCTAGAAGAGATGACACCTTTGCACCTGAGCACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTCTGCTGAAGTTTATGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGCCTGCTGGGAAGCACTaGCAACTGCAGGGCTGGAGT +
Preference number: 5 (lower is better)
Translates to: FSVYISGHPQGPSILNALPAGKH*QLQGWS
Trigger: ACTCCAGCCCTGCAGTTGCAAGTGCTTCCCAGCAGG...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp ATAGCTGCGATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGGCAGCGTCCTTGTTTTaGTCCTGTGTATCCACCTCC +
Preference number: 5 (lower is better)
Translates to: IAAMDRAPCSSMNWITSWAASLF*SCVSTS
Trigger: GGAGGTGGATACACAGGACAAAAACAAGGACGCTGC...CCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS GCA 90 bp AGCAGAAGAGCTAGACACTTGGGGCTCCTGTGCCGAGTGCTCAGGTaGAAAGGTGTCATCTCTTCTAGATCCTTCTGCATCCAGTTTGCT +
Preference number: 5 (lower is better)
Translates to: SRRARHLGLLCRVLR*KGVISSRSFCIQFA
Trigger: AGCAAACTGGATGCAGAAGGATCTAGAAGAGATGACACCTTTGCACCTGAGCACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp CTTGCTTCTTGGTGTGTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCGCGATAATTTCCCTTTaGAGCTGCAAGGTGGAGGGC +
Preference number: 5 (lower is better)
Translates to: LASWCVTVERTLISTGNFAIISL*SCKVEG
Trigger: GCCCTCCACCTTGCAGCTCAAAAGGGAAATTATCGC...GAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACACCAAGAAGCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATAGAAGAGCTAGACACTaGGGGCTCCTGTGCCGAGTG +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHRRARH*GLLCRV
Trigger: CACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTCT...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TTTCCTCAGCTGTTCGTGCTTCATGAGGAGGTTCTTCCGGTCTCGGAAGGCTTTGGGGTGTGTACCTCTTaGTCTTGGATGTTGGGGTCT +
Preference number: 5 (lower is better)
Translates to: FPQLFVLHEEVLPVSEGFGVCTS*SWMLGS
Trigger: AGACCCCAACATCCAAGACAAAGAGGTACACACCCC...AAAGCCTTCCGAGACCGGAAGAACCTCCTCATGAAGCACGAACAGCTGAGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS GCA 90 bp GACCGTTTCAGCAAAGTTACTCTGAGCTGCATAGTGCAAGGGTGTTaGTCCCTGGCTGTCCGAAGGGATCGTTCCAGACTTGTTTCTTTC +
Preference number: 5 (lower is better)
Translates to: DRFSKVTLSCIVQGC*SLAVRRDRSRLVSF
Trigger: GAAAGAAACAAGTCTGGAACGATCCCTTCGGACAGCCAGGGAGCAACACCCTTGCACTATGCAGCTCAGAGTAACTTTGCTGAAACGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp CTTGCTTCTTGGTGTGTGACGGTGGAGAGAACTCTGATCAGCACAGGCAACTTCACATCTGCTCCTGCTTaGAGAAGAGCATCTGCACAG +
Preference number: 5 (lower is better)
Translates to: LASWCVTVERTLISTGNFTSAPA*RRASAQ
Trigger: CTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGT...GAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACACCAAGAAGCAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCGGCTATGGTCCGTTTaGTTGACATCTGCTCCTGCT +
Preference number: 5 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPRLWSV*LTSAPA
Trigger: AGCAGGAGCAGATGTCAACAAAACGGACCATAGCCG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp CCCACCCTGGCACTTCAGATTTCTATGTGGCTGTGCTCATCCAGTCCCACTGAGTCAGCTTCCTTCCTCTaGTTTTCCTCTTCCCGTTTT +
Preference number: 5 (lower is better)
Translates to: PTLALQISMWLCSSSPTESASFL*FSSSRF
Trigger: AAAACGGGAAGAGGAAAACAAGAGGAAGGAAGCTGA...CTCAGTGGGACTGGATGAGCACAGCCACATAGAAATCTGAAGTGCCAGGGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTATGGAAGAATCCCCTaGGGAGGCTCTGCCTGGACA +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHYGRIP*GGSAWT
Trigger: TGTCCAGGCAGAGCCTCCCAAGGGGATTCTTCCATA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCTATGGGTGTTTCACTaGGCTTTCTGGAGGCCGTTC +
Preference number: 5 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPLWVFH*AFWRPF
Trigger: GAACGGCCTCCAGAAAGCCAAGTGAAACACCCATAG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTGGTTCTTGGAGCTGTaGCCACCTTCCCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHWFLEL*PPSQDL
Trigger: CAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 90 bp ATCTGCTCCTGCTTTGAGAAGAGCATCTGCACAGTCCACTCTGTCTaGCAACACACAGTACATAAGTGGTGTTCTCCCAAACCGGTCTTC +
Preference number: 5 (lower is better)
Translates to: ICSCFEKSICTVHSV*QHTVHKWCSPKPVF
Trigger: GAAGACCGGTTTGGGAGAACACCACTTATGTACTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 90 bp CCAGTGCAAAGCTGTTCGTCCCTCTTTGTCTTGGATGTTGGGGTCTaGATTATTCTCCATGAGCACAGCCATACAGTTGATGTACCCTCC +
Preference number: 5 (lower is better)
Translates to: PVQSCSSLFVLDVGV*IILHEHSHTVDVPS
Trigger: GGAGGGTACATCAACTGTATGGCTGTGCTCATGGAGAATAATGCAGACCCCAACATCCAAGACAAAGAGGGACGAACAGCTTTGCACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TTTCCTCAGCTGTTCGTGCTTCATGAGGAGGTTCTTCCGGTCTCGGAAGGCTTTCCAAACCGGTCTTCTTaGTCTCTGAGAGCAGAGTTT +
Preference number: 5 (lower is better)
Translates to: FPQLFVLHEEVLPVSEGFPNRSS*SLRAEF
Trigger: AAACTCTGCTCTCAGAGACAAAGAAGACCGGTTTGG...AAAGCCTTCCGAGACCGGAAGAACCTCCTCATGAAGCACGAACAGCTGAGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp AAAGACAATCTGAAGTCAAAGGATCATGGGAAAATTCATCCCATGCTGCCCCCAAGAAGAGCTAGACACTaGGGGCTCCTGTGCCGAGTG +
Preference number: 5 (lower is better)
Translates to: KDNLKSKDHGKIHPMLPPRRARH*GLLCRV
Trigger: CACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTCT...TGGGGGCAGCATGGGATGAATTTTCCCATGATCCTTTGACTTCAGATTGTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTCGGGAATCCCGATGTaGGAGTCGTGCTTGATGAGT +
Preference number: 5 (lower is better)
Translates to: FSVYISGHPQGPSILNALSGIPM*ESCLMS
Trigger: ACTCATCAAGCACGACTCCAACATCGGGATTCCCGA...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATAGCACAGCCATACAGTaGATGTACCCTCCGTACGCA +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHSTAIQ*MYPPYA
Trigger: TGCGTACGGAGGGTACATCAACTGTATGGCTGTGCT...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp ATAGCTGCGATGGACAGGGCACCATGTTCCAGCATGAACTGGATCACCTCATGGTCTTTGTCTTGGATGTaGGGGTCTGCATTATTCTCC +
Preference number: 5 (lower is better)
Translates to: IAAMDRAPCSSMNWITSWSLSWM*GSALFS
Trigger: GGAGAATAATGCAGACCCCAACATCCAAGACAAAGA...CCATGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTCCTCTTCCCGTTTTTaGGCTGCAGCGTCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: FSVYISGHPQGPSILNALSSSRF*AAASFL
Trigger: GAGGAAAGACGCTGCAGCCAAAAAACGGGAAGAGGA...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACACAGGCAACTTCCCCCTaGGCACTGCCAGGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTQATSP*ALPGRL
Trigger: CAGCCGGCCTGGCAGTGCCAAGGGGGAAGTTGCCTG...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TTCAGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGACCCCTCCTATAAGCTaGTCCTGGGTCACCTTGCTT +
Preference number: 5 (lower is better)
Translates to: FSVYISGHPQGPSILNALTPPIS*SWVTLL
Trigger: AAGCAAGGTGACCCAGGACAAGCTTATAGGAGGGGT...CAATGCATTCAATATACTAGGCCCTTGGGGATGGCCACTGATGTACACGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS TCA 90 bp GCTCGGAACAGTGGAGTATGTTTCATGACGTCAGTGGCATCCACTTaGGCATCATTGTCCAATAATAACTTCACGGTGCTGACGTGGCCA +
Preference number: 5 (lower is better)
Translates to: ARNSGVCFMTSVAST*ASLSNNNFTVLTWP
Trigger: TGGCCACGTCAGCACCGTGAAGTTATTATTGGACAATGATGCTCAAGTGGATGCCACTGACGTCATGAAACATACTCCACTGTTCCGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CCA 90 bp AGCATCTGCACAGTCCACTCTGTCTGCCAACACACAGTACATAAGTaGTGTTCTCCCAAACCGGTCTTCTTTGTCTCTGAGAGCAGAGTT +
Preference number: 5 (lower is better)
Translates to: SICTVHSVCQHTVHK*CSPKPVFFVSESRV
Trigger: AACTCTGCTCTCAGAGACAAAGAAGACCGGTTTGGGAGAACACCACTTATGTACTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CCA 90 bp CGTCTGAATCACATCTCTGTGTCCCATCTCACAGGCTCGGAACAGTaGAGTATGTTTCATGACGTCAGTGGCATCCACTTGAGCATCATT +
Preference number: 5 (lower is better)
Translates to: RLNHISVSHLTGSEQ*SMFHDVSGIHLSII
Trigger: AATGATGCTCAAGTGGATGCCACTGACGTCATGAAACATACTCCACTGTTCCGAGCCTGTGAGATGGGACACAGAGATGTGATTCAGACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp CAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCCCCAGTGCAGAGCTGTTaGCTTGTTTTTGTCCTGTGT +
Preference number: 5 (lower is better)
Translates to: QWLTDLHYCFSVYISGHPPVQSC*LVFVLC
Trigger: ACACAGGACAAAAACAAGCAAACAGCTCTGCACTGG...GGGATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 90 bp ATGGTCCGTTTTGTTGACATCTGCTCCTGCTTTGAGAAGAGCATCTaGACAGTCCACTCTGTCTGCCAACACACAGTACATAAGTGGTGT +
Preference number: 5 (lower is better)
Translates to: MVRFVDICSCFEKSI*TVHSVCQHTVHKWC
Trigger: ACACCACTTATGTACTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACGGACCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATCCAAACCGGTCTTCTTaGTCTCTGAGAGCAGAGTTT +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHPNRSS*SLRAEF
Trigger: AAACTCTGCTCTCAGAGACAAAGAAGACCGGTTTGG...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp CAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCGCGATAATTTCCCTTTaGAGCTGCAAGGTGGAGGGC +
Preference number: 5 (lower is better)
Translates to: QLEEHILHIGNSFWDSPCAIISL*SCKVEG
Trigger: GCCCTCCACCTTGCAGCTCAAAAGGGAAATTATCGC...GCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGGAAGGCAGCGATGTCTaGTATAGCTGCGATGGACAG +
Preference number: 5 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLEGSDV*YSCDGQ
Trigger: CTGTCCATCGCAGCTATACAAGACATCGCTGCCTTC...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS TCA 90 bp CTCTGTGTCCCATCTCACAGGCTCGGAACAGTGGAGTATGTTTCATaGCGTCAGTGGCATCCACTTGAGCATCATTGTCCAATAATAACT +
Preference number: 5 (lower is better)
Translates to: LCVPSHRLGTVEYVS*RQWHPLEHHCPIIT
Trigger: AGTTATTATTGGACAATGATGCTCAAGTGGATGCCACTGACGTCATGAAACATACTCCACTGTTCCGAGCCTGTGAGATGGGACACAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS TCA 90 bp CACACTGAAGCGGTGTTCTTCCTGCATAATCCTGCACGTTTGGGTTaGTCTTATTTTCTATCAGTATCTGGCAGACGTCAGCATTTCCCC +
Preference number: 5 (lower is better)
Translates to: HTEAVFFLHNPARLG*SYFLSVSGRRQHFP
Trigger: GGGGAAATGCTGACGTCTGCCAGATACTGATAGAAAATAAGATCAACCCAAACGTGCAGGATTATGCAGGAAGAACACCGCTTCAGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CCA 90 bp CGCAGCACACTGAAGCGGTGTTCTTCCTGCATAATCCTGCACGTTTaGGTTGATCTTATTTTCTATCAGTATCTGGCAGACGTCAGCATT +
Preference number: 5 (lower is better)
Translates to: RSTLKRCSSCIILHV*VDLIFYQYLADVSI
Trigger: AATGCTGACGTCTGCCAGATACTGATAGAAAATAAGATCAACCCAAACGTGCAGGATTATGCAGGAAGAACACCGCTTCAGTGTGCTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp GAGCAGTGGCTTACAGACTTACATTACTGCTTCAGCGTGTACATCAGTGGCCATTCTTTGTCTTGGATGTaGGGGTCTGCATTATTCTCC +
Preference number: 5 (lower is better)
Translates to: EQWLTDLHYCFSVYISGHSLSWM*GSALFS
Trigger: GGAGAATAATGCAGACCCCAACATCCAAGACAAAGA...ATGGCCACTGATGTACACGCTGAAGCAGTAATGTAAGTCTGTAAGCCACTGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 90 bp CCCAGTGAAGTGGGGTTCGAAATAAGTTATCGTAAGACGTTATGTTaGAGCTTTCATAGGAGGTCAAGACATCCACCACCGTTAGGTTTC +
Preference number: 5 (lower is better)
Translates to: PSEVGFEISYRKTLC*SFHRRSRHPPPLGF
Trigger: GAAACCTAACGGTGGTGGATGTCTTGACCTCCTATGAAAGCTGCAACATAACGTCTTACGATAACTTATTTCGAACCCCACTTCACTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 90 bp GTTGATGTACCCTCCGTACGCAGCACACTGAAGCGGTGTTCTTCCTaGATAATCCTGCACGTTTGGGTTGATCTTATTTTCTATCAGTAT +
Preference number: 5 (lower is better)
Translates to: VDVPSVRSTLKRCSS*IILHVWVDLIFYQY
Trigger: ATACTGATAGAAAATAAGATCAACCCAAACGTGCAGGATTATGCAGGAAGAACACCGCTTCAGTGTGCTGCGTACGGAGGGTACATCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGATCGTCCCTCTTTGTCTaGGATGTTGGGGTCTGCATT +
Preference number: 5 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGSSLFV*DVGVCI
Trigger: AATGCAGACCCCAACATCCAAGACAAAGAGGGACGA...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGACTATGGTCCGTTTTGTaGACATCTGCTCCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGLWSVL*TSAPAL
Trigger: CAAAGCAGGAGCAGATGTCAACAAAACGGACCATAG...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp ATCTTACATATAGGCAACAGCTTTTGGGATAGCCCTTGCTCCAGTTATTCAGGAGCTGTTTGCTTGTTTTaGTCCTGTGTATCCACCTCC +
Preference number: 5 (lower is better)
Translates to: ILHIGNSFWDSPCSSYSGAVCLF*SCVSTS
Trigger: GGAGGTGGATACACAGGACAAAAACAAGCAAACAGC...TCCTGAATAACTGGAGCAAGGGCTATCCCAAAAGCTGTTGCCTATATGTAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp AGACAAGGCAGCCCAGCTAGAAGAGCATATCTTACATATAGGCAACAGCTTTTGATGGACTTTGGGAATTaGAGTTCCAGTTCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: RQGSPARRAYLTYRQQLLMDFGN*SSSSFL
Trigger: GAGGAAAGAACTGGAACTCAAATTCCCAAAGTCCAT...CAAAAGCTGTTGCCTATATGTAAGATATGCTCTTCTAGCTGGGCTGCCTTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS TCA 90 bp CCACATGAAAGATGTTCTTCCTTCCAGGTCAGAATCATCCTTCACTaGAGGATGCTGCAAAAACACTTTGACCGTTTCAGCAAAGTTACT +
Preference number: 5 (lower is better)
Translates to: PHERCSSFQVRIILH*RMLQKHFDRFSKVT
Trigger: AGTAACTTTGCTGAAACGGTCAAAGTGTTTTTGCAGCATCCTTCAGTGAAGGATGATTCTGACCTGGAAGGAAGAACATCTTTCATGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS-3UTR CAA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAACATCTGCTCCTGCTTaGAGAAGAGCATCTGCACAG +
Preference number: 5 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTTSAPA*RRASAQ
Trigger: CTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGT...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACATCCTTTGTAGACTGCTaGGATTTTGAAGGCAGCGAT +
Preference number: 5 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTSFVDC*DFEGSD
Trigger: ATCGCTGCCTTCAAAATCCAAGCAGTCTACAAAGGA...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS-3UTR CAA 90 bp TGTATTAAAGAAGCACCATGGTACCTCCTGTTTGAAGTTAATTGTTCATGCACAGCTTTGGCTTGTTTTTaGATTGACTGGATGGTTGCA +
Preference number: 5 (lower is better)
Translates to: CIKEAPWYLLFEVNCSCTALACF*IDWMVA
Trigger: TGCAACCATCCAGTCAATCAAAAAACAAGCCAAAGC...TGTGCATGAACAATTAACTTCAAACAGGAGGTACCATGGTGCTTCTTTAATACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 72 bp CACTGTGTGCACGGCACTCGGGTCTTTGTGGTTGGCTaGCCAGTGGAGTGGGATCTTGCCTTCCACGTCGGG +
Preference number: 6 (lower is better)
Translates to: HCVHGTRVFVVG*PVEWDLAFHVG
Trigger: CCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 72 bp TGCACGGCACTCGGGTCTTTGTGGTTGGCTGCCCAGTaGAGTGGGATCTTGCCTTCCACGTCGGGAATCCCG +
Preference number: 6 (lower is better)
Translates to: CTALGSLWLAAQ*SGILPSTSGIP
Trigger: CGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 72 bp TCTGTCGGGGCAGCGTCCAGGATACATCTCACTGTGTaGACGGCACTCGGGTCTTTGTGGTTGGCTGCCCAG +
Preference number: 6 (lower is better)
Translates to: SVGAASRIHLTV*TALGSLWLAAQ
Trigger: CTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCTGGACGCTGCCCCGACAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CAA 90 bp GCAGCGTCCAGGATACATCTCACTGTGTGCACGGCACTCGGGTCTTaGTGGTTGGCTGCCCAGTGGAGTGGGATCTTGCCTTCCACGTCG +
Preference number: 6 (lower is better)
Translates to: AASRIHLTVCTALGS*WLAAQWSGILPSTS
Trigger: CGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCTGGACGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 72 bp GGCACTCGGGTCTTTGTGGTTGGCTGCCCAGTGGAGTaGGATCTTGCCTTCCACGTCGGGAATCCCGATGTT +
Preference number: 6 (lower is better)
Translates to: GTRVFVVGCPVE*DLAFHVGNPDV
Trigger: AACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CAA 72 bp GGGTCTTTGTGGTTGGCTGCCCAGTGGAGTGGGATCTaGCCTTCCACGTCGGGAATCCCGATGTTGGAGTCG +
Preference number: 6 (lower is better)
Translates to: GSLWLAAQWSGI*PSTSGIPMLES
Trigger: CGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CAA 90 bp GCCCAGTGGAGTGGGATCTTGCCTTCCACGTCGGGAATCCCGATGTaGGAGTCGTGCTTGATGAGTAGCTTCGCGTGCTCGGGGTTGTTG +
Preference number: 6 (lower is better)
Translates to: AQWSGILPSTSGIPM*ESCLMSSFACSGLL
Trigger: CAACAACCCCGAGCACGCGAAGCTACTCATCAAGCACGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CAA 90 bp ACGGCACTCGGGTCTTTGTGGTTGGCTGCCCAGTGGAGTGGGATCTaGCCTTCCACGTCGGGAATCCCGATGTTGGAGTCGTGCTTGATG +
Preference number: 6 (lower is better)
Translates to: TALGSLWLAAQWSGI*PSTSGIPMLESCLM
Trigger: CATCAAGCACGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 72 bp GGTCTTTGTGGTTGGCTGCCCAGTGGAGTGGGATCTTaGCTTCCACGTCGGGAATCCCGATGTTGGAGTCGT +
Preference number: 6 (lower is better)
Translates to: GLCGWLPSGVGS*LPRRESRCWSR
Trigger: ACGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 72 bp ATCTCACTGTGTGCACGGCACTCGGGTCTTTGTGGTTaGCTGCCCAGTGGAGTGGGATCTTGCCTTCCACGT +
Preference number: 6 (lower is better)
Translates to: ISLCARHSGLCG*LPSGVGSCLPR
Trigger: ACGTGGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 72 bp ATACATCTCACTGTGTGCACGGCACTCGGGTCTTTGTaGTTGGCTGCCCAGTGGAGTGGGATCTTGCCTTCC +
Preference number: 6 (lower is better)
Translates to: IHLTVCTALGSL*LAAQWSGILPS
Trigger: GGAAGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CAA 72 bp AGTGGGATCTTGCCTTCCACGTCGGGAATCCCGATGTaGGAGTCGTGCTTGATGAGTAGCTTCGCGTGCTCG +
Preference number: 6 (lower is better)
Translates to: SGILPSTSGIPM*ESCLMSSFACS
Trigger: CGAGCACGCGAAGCTACTCATCAAGCACGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CAA 72 bp AGGATACATCTCACTGTGTGCACGGCACTCGGGTCTTaGTGGTTGGCTGCCCAGTGGAGTGGGATCTTGCCT +
Preference number: 6 (lower is better)
Translates to: RIHLTVCTALGS*WLAAQWSGILP
Trigger: AGGCAAGATCCCACTCCACTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 72 bp GCAGAAGAGCTAGACACTTGGGGCTCCTGTGCCGAGTaGTCAGGTGCAAAGGTGTCATCTCTTCTAGATCCT +
Preference number: 6 (lower is better)
Translates to: AEELDTWGSCAE*SGAKVSSLLDP
Trigger: AGGATCTAGAAGAGATGACACCTTTGCACCTGAGCACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 72 bp CAGCAAAGTTACTCTGAGCTGCATAGTGCAAGGGTGTaGCTCCCTGGCTGTCCGAAGGGATCGTTCCAGACT +
Preference number: 6 (lower is better)
Translates to: QQSYSELHSARV*LPGCPKGSFQT
Trigger: AGTCTGGAACGATCCCTTCGGACAGCCAGGGAGCAACACCCTTGCACTATGCAGCTCAGAGTAACTTTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp AGCAAAGTTACTCTGAGCTGCATAGTGCAAGGGTGTTaGTCCCTGGCTGTCCGAAGGGATCGTTCCAGACTT +
Preference number: 6 (lower is better)
Translates to: SKVTLSCIVQGC*SLAVRRDRSRL
Trigger: AAGTCTGGAACGATCCCTTCGGACAGCCAGGGAGCAACACCCTTGCACTATGCAGCTCAGAGTAACTTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp CAGCATCGTCCTGAGCACGTCGTCATTGCCTTTTCCTaGTGCCCACATGAAAGATGTTCTTCCTTCCAGGTC +
Preference number: 6 (lower is better)
Translates to: QHRPEHVVIAFS*CPHERCSSFQV
Trigger: GACCTGGAAGGAAGAACATCTTTCATGTGGGCAGCAGGAAAAGGCAATGACGACGTGCTCAGGACGATGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CCA 72 bp GCATCATTGTCCAATAATAACTTCACGGTGCTGACGTaGCCAGAAAGGGCAGCGGCGTGTAAAGCTGTGCCT +
Preference number: 6 (lower is better)
Translates to: ASLSNNNFTVLT*PERAAACKAVP
Trigger: AGGCACAGCTTTACACGCCGCTGCCCTTTCTGGCCACGTCAGCACCGTGAAGTTATTATTGGACAATGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 72 bp AGGTGGAGGGCTGTTCTCCGGCTATGGTCCGTTTTGTaGACATCTGCTCCTGCTTTGAGAAGAGCATCTGCA +
Preference number: 6 (lower is better)
Translates to: RWRAVLRLWSVL*TSAPALRRASA
Trigger: TGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACGGACCATAGCCGGAGAACAGCCCTCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 90 bp GCTGTTCTCCGGCTATGGTCCGTTTTGTTGACATCTGCTCCTGCTTaGAGAAGAGCATCTGCACAGTCCACTCTGTCTGCCAACACACAG +
Preference number: 6 (lower is better)
Translates to: AVLRLWSVLLTSAPA*RRASAQSTLSANTQ
Trigger: CTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACGGACCATAGCCGGAGAACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp TCTCCGGCTATGGTCCGTTTTGTTGACATCTGCTCCTaGTTTGAGAAGAGCATCTGCACAGTCCACTCTGTC +
Preference number: 6 (lower is better)
Translates to: SPAMVRFVDICS*FEKSICTVHSV
Trigger: GACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAAACGGACCATAGCCGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp TTAGGTTTCCATCAGCGACAGCAAAGTGCAGAGGTGTaGGGCCCTCGTAGTCTTGCCAGTTCAGTAAAGACT +
Preference number: 6 (lower is better)
Translates to: LGFHQRQQSAEV*GPRSLASSVKT
Trigger: AGTCTTTACTGAACTGGCAAGACTACGAGGGCCGCACACCTCTGCACTTTGCTGTCGCTGATGGAAACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp CATCGTCCTGAGCACGTCGTCATTGCCTTTTCCTGCTaGCCACATGAAAGATGTTCTTCCTTCCAGGTCAGA +
Preference number: 6 (lower is better)
Translates to: HRPEHVVIAFSC*PHERCSSFQVR
Trigger: TCTGACCTGGAAGGAAGAACATCTTTCATGTGGGCAGCAGGAAAAGGCAATGACGACGTGCTCAGGACGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CCA 72 bp CACATCTCTGTGTCCCATCTCACAGGCTCGGAACAGTaGAGTATGTTTCATGACGTCAGTGGCATCCACTTG +
Preference number: 6 (lower is better)
Translates to: HISVSHLTGSEQ*SMFHDVSGIHL
Trigger: CAAGTGGATGCCACTGACGTCATGAAACATACTCCACTGTTCCGAGCCTGTGAGATGGGACACAGAGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 90 bp TCGATGTCTGACTTTAGACTCAGCATCGTCCTGAGCACGTCGTCATaGCCTTTTCCTGCTGCCCACATGAAAGATGTTCTTCCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: SMSDFRLSIVLSTSS*PFPAAHMKDVLPSR
Trigger: CCTGGAAGGAAGAACATCTTTCATGTGGGCAGCAGGAAAAGGCAATGACGACGTGCTCAGGACGATGCTGAGTCTAAAGTCAGACATCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS TCA 72 bp CCATCTCACAGGCTCGGAACAGTGGAGTATGTTTCATaGCGTCAGTGGCATCCACTTGAGCATCATTGTCCA +
Preference number: 6 (lower is better)
Translates to: PSHRLGTVEYVS*RQWHPLEHHCP
Trigger: TGGACAATGATGCTCAAGTGGATGCCACTGACGTCATGAAACATACTCCACTGTTCCGAGCCTGTGAGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp CCCTCCGTACGCAGCACACTGAAGCGGTGTTCTTCCTaGATAATCCTGCACGTTTGGGTTGATCTTATTTTC +
Preference number: 6 (lower is better)
Translates to: PSVRSTLKRCSS*IILHVWVDLIF
Trigger: GAAAATAAGATCAACCCAAACGTGCAGGATTATGCAGGAAGAACACCGCTTCAGTGTGCTGCGTACGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 72 bp GTTGCTCCCTGGCTGTCCGAAGGGATCGTTCCAGACTaGTTTCTTTCTAGAAGGAGATGGACAATCTGTGCA +
Preference number: 6 (lower is better)
Translates to: VAPWLSEGIVPD*FLSRRRWTICA
Trigger: TGCACAGATTGTCCATCTCCTTCTAGAAAGAAACAAGTCTGGAACGATCCCTTCGGACAGCCAGGGAGCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 72 bp GAAAGGGCAGCGGCGTGTAAAGCTGTGCCTCCGTACTaGTCCGACATGTTAATGTCGATGTCTGACTTTAGA +
Preference number: 6 (lower is better)
Translates to: ERAAACKAVPPY*SDMLMSMSDFR
Trigger: TCTAAAGTCAGACATCGACATTAACATGTCGGACAAGTACGGAGGCACAGCTTTACACGCCGCTGCCCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp CATGAACTGGATCACCTCATGGCGCTCACCAAGCAATaGATAATCAAGGGGTGTGTACCTCTCCTCATTGTT +
Preference number: 6 (lower is better)
Translates to: HELDHLMALTKQ*IIKGCVPLLIV
Trigger: AACAATGAGGAGAGGTACACACCCCTTGATTATGCATTGCTTGGTGAGCGCCATGAGGTGATCCAGTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS CCA 72 bp ACAGTCCACTCTGTCTGCCAACACACAGTACATAAGTaGTGTTCTCCCAAACCGGTCTTCTTTGTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: TVHSVCQHTVHK*CSPKPVFFVSE
Trigger: CTCAGAGACAAAGAAGACCGGTTTGGGAGAACACCACTTATGTACTGTGTGTTGGCAGACAGAGTGGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 72 bp GACTTTAGACTCAGCATCGTCCTGAGCACGTCGTCATaGCCTTTTCCTGCTGCCCACATGAAAGATGTTCTT +
Preference number: 6 (lower is better)
Translates to: DFRLSIVLSTSS*PFPAAHMKDVL
Trigger: AAGAACATCTTTCATGTGGGCAGCAGGAAAAGGCAATGACGACGTGCTCAGGACGATGCTGAGTCTAAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS CAA 72 bp CAGTGCAAAGCTGTTCGTCCCTCTTTGTCTTGGATGTaGGGGTCTGCATTATTCTCCATGAGCACAGCCATA +
Preference number: 6 (lower is better)
Translates to: QCKAVRPSLSWM*GSALFSMSTAI
Trigger: TATGGCTGTGCTCATGGAGAATAATGCAGACCCCAACATCCAAGACAAAGAGGGACGAACAGCTTTGCACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS TCA 72 bp TTGTCTCTGAGAGCAGAGTTTCCAACAATGAGTCTCTaGAGGGCACCTTTATCTCCATTAACTGCAGCGGCA +
Preference number: 6 (lower is better)
Translates to: LSLRAEFPTMSL*RAPLSPLTAAA
Trigger: TGCCGCTGCAGTTAATGGAGATAAAGGTGCCCTTCAGAGACTCATTGTTGGAAACTCTGCTCTCAGAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp TGCTTTGAGAAGAGCATCTGCACAGTCCACTCTGTCTaGCAACACACAGTACATAAGTGGTGTTCTCCCAAA +
Preference number: 6 (lower is better)
Translates to: CFEKSICTVHSV*QHTVHKWCSPK
Trigger: TTTGGGAGAACACCACTTATGTACTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp TTTGTTGACATCTGCTCCTGCTTTGAGAAGAGCATCTaGACAGTCCACTCTGTCTGCCAACACACAGTACAT +
Preference number: 6 (lower is better)
Translates to: FVDICSCFEKSI*TVHSVCQHTVH
Trigger: ATGTACTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCAGGAGCAGATGTCAACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp AAGCGAATGTCCGTCCTGGTCAACCAGATCTACTCGTaGTCCACCTTTAATAAGCGTCTGAATCACATCTCT +
Preference number: 6 (lower is better)
Translates to: KRMSVLVNQIYS*STFNKRLNHIS
Trigger: AGAGATGTGATTCAGACGCTTATTAAAGGTGGAGCACGAGTAGATCTGGTTGACCAGGACGGACATTCGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS TCA 72 bp GCGGTGTTCTTCCTGCATAATCCTGCACGTTTGGGTTaGTCTTATTTTCTATCAGTATCTGGCAGACGTCAG +
Preference number: 6 (lower is better)
Translates to: AVFFLHNPARLG*SYFLSVSGRRQ
Trigger: CTGACGTCTGCCAGATACTGATAGAAAATAAGATCAACCCAAACGTGCAGGATTATGCAGGAAGAACACCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS TCA 72 bp ACTGTTGTCAAGATGTATAGACTGCAAACTGTTCACTaGGCTGAGATGAAGCACAGCGGGGGCTTTAGAAGA +
Preference number: 6 (lower is better)
Translates to: TVVKMYRLQTVH*AEMKHSGGFRR
Trigger: TCTTCTAAAGCCCCCGCTGTGCTTCATCTCAGCTCAGTGAACAGTTTGCAGTCTATACATCTTGACAACAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030029.10
CDS GCA 72 bp GTGGGGTTCGAAATAAGTTATCGTAAGACGTTATGTTaGAGCTTTCATAGGAGGTCAAGACATCCACCACCG +
Preference number: 6 (lower is better)
Translates to: VGFEISYRKTLC*SFHRRSRHPPP
Trigger: CGGTGGTGGATGTCTTGACCTCCTATGAAAGCTGCAACATAACGTCTTACGATAACTTATTTCGAACCCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS TCA 72 bp AGTGGAGTATGTTTCATGACGTCAGTGGCATCCACTTaGGCATCATTGTCCAATAATAACTTCACGGTGCTG +
Preference number: 6 (lower is better)
Translates to: SGVCFMTSVAST*ASLSNNNFTVL
Trigger: CAGCACCGTGAAGTTATTATTGGACAATGATGCTCAAGTGGATGCCACTGACGTCATGAAACATACTCCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2
CDS GCA 72 bp CCTTCCAGGTCAGAATCATCCTTCACTGAAGGATGCTaGAAAAACACTTTGACCGTTTCAGCAAAGTTACTC +
Preference number: 6 (lower is better)
Translates to: PSRSESSFTEGC*KNTLTVSAKLL
Trigger: GAGTAACTTTGCTGAAACGGTCAAAGTGTTTTTGCAGCATCCTTCAGTGAAGGATGATTCTGACCTGGAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030029.10
ENSMUST00000143433.2