Pregenerated sensors for INSM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045440Ensembl transcript IDs: ENSMUST00000051857.5
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACGTTGGTGACTACCACTTTAGGTAGAATCTTGTGTAGACAGACTTaGAGGCGTTCACTGCGATTTTCCATAGGAACTACAAACCCAAGG | + |
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Preference number: 1 (lower is better) Translates to: TLVTTTLGRILCRQT*RRSLRFSIGTTNPR Trigger: CCTTGGGTTTGTAGTTCCTATGGAAAATCGCAGTGAACGCCTGCAAGTCTGTCTACACAAGATTCTACCTAAAGTGGTAGTCACCAACGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR CCA 90 bp | CCTCAGATTTCCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTGTATGGGAAGGAAACTaGAAATTGCAAGATGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: PQISCPSTRVWVFPPFRFVWEGN*KLQDEE Trigger: CTCTTCATCTTGCAATTTCCAGTTTCCTTCCCATAC...AAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR TCA 90 bp | GCCAAATACATACCTGCTCTAGAGAGGGGGTTTTACATCTTGTTGCCCTCTCCTCTGGAAATTGCAAGATaGAGAGAGTCCCACAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: AKYIPALERGFYILLPSPLEIAR*RESHRS Trigger: ACTCCTGTGGGACTCTCTTCATCTTGCAATTTCCAG...AGGAGAGGGCAACAAGATGTAAAACCCCCTCTCTAGAGCAGGTATGTATTTGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR GCA 90 bp | TGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCACAAAGCTTGATTCACAGGGTTTTACATCTTGTTaGCCTCTCCTCAGGCACCAT | + |
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Preference number: 2 (lower is better) Translates to: CGSSLPSGLTSVTKLDSQGFTSC*PLLRHH Trigger: ATGGTGCCTGAGGAGAGGGCAACAAGATGTAAAACC...CTGTGAATCAAGCTTTGTGACTGATGTCAAACCTGAAGGGAGGGAAGACCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CAA 90 bp | GGGAAATCTCATTGTAGTGGGAGTGAGGACTTGAAGCTGTCAGCGTaGACCGTGAATTTTTATGCCAAATACATACCTGCTCTAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: GKSHCSGSEDLKLSA*TVNFYAKYIPALER Trigger: CCTCTCTAGAGCAGGTATGTATTTGGCATAAAAATTCACGGTCAACGCTGACAGCTTCAAGTCCTCACTCCCACTACAATGAGATTTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CAA 90 bp | CAGTCTACATACATTTATTTGGCAGAACCATTCTTACAAATCCATTaGTCAAAGAGCACTCTGCCAGTGTCCCAGACTCTGGCTATTGAG | + |
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Preference number: 2 (lower is better) Translates to: QSTYIYLAEPFLQIH*SKSTLPVSQTLAIE Trigger: CTCAATAGCCAGAGTCTGGGACACTGGCAGAGTGCTCTTTGACAAATGGATTTGTAAGAATGGTTCTGCCAAATAAATGTATGTAGACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR CCA 90 bp | CTGTCAGCGTTGACCGTGAATTTTTATGCCAAATACATACCTGCTCTAGAGAGGTTAAGAGGGAAGGTATaGGAAGGAAACTGGAAATTG | + |
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Preference number: 2 (lower is better) Translates to: LSALTVNFYAKYIPALERLRGKV*EGNWKL Trigger: CAATTTCCAGTTTCCTTCCCATACCTTCCCTCTTAA...CCTCTCTAGAGCAGGTATGTATTTGGCATAAAAATTCACGGTCAACGCTGACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR CAA 90 bp | CCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCGGGTTTTACATCTTGTaGCCCTCTCCTCAGGCACCA | + |
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Preference number: 3 (lower is better) Translates to: PVHPRGCGSSLPSGLTSVGFYIL*PSPQAP Trigger: TGGTGCCTGAGGAGAGGGCAACAAGATGTAAAACCC...GACTGATGTCAAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CCA 72 bp | CAACAGCCTCAGATTTCCTGTCCATCCACGCGGGTGTaGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: QQPQISCPSTRV*VFPPFRFDISH Trigger: GTGACTGATGTCAAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGGCTGTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR CAA 90 bp | CAACAGCCTCAGATTTCCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCACTTTAGGTAGAATCTaGTGTAGACAGACTTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: QQPQISCPSTRVWVFPPFTLGRI*CRQTCR Trigger: CCTGCAAGTCTGTCTACACAAGATTCTACCTAAAGT...GAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGGCTGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR CAA 90 bp | TTGCAGGCGTTCACTGCGATTTTCCATAGGAACTACAAACCCAAGGGAATCCATAGTGGGAGTGAGGACTaGAAGCTGTCAGCGTTGACC | + |
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Preference number: 3 (lower is better) Translates to: LQAFTAIFHRNYKPKGIHSGSED*KLSALT Trigger: GGTCAACGCTGACAGCTTCAAGTCCTCACTCCCACT...ATGGATTCCCTTGGGTTTGTAGTTCCTATGGAAAATCGCAGTGAACGCCTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR-3UTR CAA 90 bp | CCTCAGATTTCCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTACAAAAACAAAAACGTaGGTGACTACCACTTTAGGT | + |
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Preference number: 3 (lower is better) Translates to: PQISCPSTRVWVFPPFRFTKTKT*VTTTLG Trigger: ACCTAAAGTGGTAGTCACCAACGTTTTTGTTTTTGT...AAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR TCA 72 bp | GGGTTTTACATCTTGTTGCCCTCTCCTCAGGCACCATaGCTGAGAGTTTTAAGAGGGAAGGTATGGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: GFYILLPSPQAP*LRVLRGKVWEG Trigger: TCCTTCCCATACCTTCCCTCTTAAAACTCTCAGTCATGGTGCCTGAGGAGAGGGCAACAAGATGTAAAACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR TCA 72 bp | AAAGAGCACTCTGCCAGTGTCCCAGACTCTGGCTATTaGGGGAATAGTTACAGAATACACACTGAGTATGAT | + |
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Preference number: 3 (lower is better) Translates to: KEHSASVPDSGY*GNSYRIHTEYD Trigger: ATCATACTCAGTGTGTATTCTGTAACTATTCCCTCAATAGCCAGAGTCTGGGACACTGGCAGAGTGCTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CCA 72 bp | CTGAGAGTTTTAAGAGGGAAGGTATGGGAAGGAAACTaGAAATTGCAAGATGAAGAGAGTCCCACAGGAGTT | + |
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Preference number: 3 (lower is better) Translates to: LRVLRGKVWEGN*KLQDEESPTGV Trigger: AACTCCTGTGGGACTCTCTTCATCTTGCAATTTCCAGTTTCCTTCCCATACCTTCCCTCTTAAAACTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR GCA 72 bp | ACTACCACTTTAGGTAGAATCTTGTGTAGACAGACTTaGAGGCGTTCACTGCGATTTTCCATAGGAACTACA | + |
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Preference number: 3 (lower is better) Translates to: TTTLGRILCRQT*RRSLRFSIGTT Trigger: TGTAGTTCCTATGGAAAATCGCAGTGAACGCCTGCAAGTCTGTCTACACAAGATTCTACCTAAAGTGGTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR TCA 72 bp | GCAGGTGTTAACATCCCCCTTAGGTTGAACAGTTTATaGTGTAATATGCAGCAGACTTACAGCATAATCATT | + |
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Preference number: 3 (lower is better) Translates to: AGVNIPLRLNSL*CNMQQTYSIII Trigger: AATGATTATGCTGTAAGTCTGCTGCATATTACATCATAAACTGTTCAACCTAAGGGGGATGTTAACACCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR TCA 90 bp | CCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCCGGGAGCAGCGGTGCTaGGCCAGAGCGAAGGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: PVHPRGCGSSLPSGLTSVREQRC*ARAKGS Trigger: GGACCCCTTCGCTCTGGCTCAGCACCGCTGCTCCCG...GACTGATGTCAAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CCA 90 bp | CAACAGCCTCAGATTTCCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCGGCAGGCGTGGGACGTaGCTTGTGCCAGCGGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: QQPQISCPSTRVWVFPPFGRRGT*LVPAAV Trigger: CACCGCCGCTGGCACAAGCCACGTCCCACGCCTGCC...GAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGGCTGTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR TCA 90 bp | TGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCACAAAGCTTGATTCACAGGCGCTGTCCCGGTGCTaGCCGTCTCCGGAGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: CGSSLPSGLTSVTKLDSQALSRC*PSPELS Trigger: GGACAGCTCCGGAGACGGTCAGCACCGGGACAGCGC...CTGTGAATCAAGCTTTGTGACTGATGTCAAACCTGAAGGGAGGGAAGACCCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CCA 90 bp | CGTTCACTGCGATTTTCCATAGGAACTACAAACCCAAGGGAATCCATTGGGGTCCGGCGCAGGCAGGCGTaGGACGTGGCTTGTGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RSLRFSIGTTNPRESIGVRRRQA*DVACAS Trigger: GCTGGCACAAGCCACGTCCCACGCCTGCCTGCGCCG...GACCCCAATGGATTCCCTTGGGTTTGTAGTTCCTATGGAAAATCGCAGTGAACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CCA 90 bp | GAGAGTCCCACAGGAGTTCCCGTATGTTTTCTCCAAGCCATTCTCGAAATCTCGGCCGAGCCCGTCTCATaGGTGCCCAGGTGCTTGCGC | + |
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Preference number: 4 (lower is better) Translates to: ESPTGVPVCFLQAILEISAEPVS*VPRCLR Trigger: GCGCAAGCACCTGGGCACCCATGAGACGGGCTCGGC...CGAGATTTCGAGAATGGCTTGGAGAAAACATACGGGAACTCCTGTGGGACTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | GCCAAATACATACCTGCTCTAGAGAGGGGGTTTTACATCTTGTTGCCCTCTCCTGTCGTCCTGCGGAGGTaGGAGGCAGGGGGACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: AKYIPALERGFYILLPSPVVLRR*EAGGPQ Trigger: TTGGGGTCCCCCTGCCTCGCACCTCCGCAGGACGAC...AGGAGAGGGCAACAAGATGTAAAACCCCCTCTCTAGAGCAGGTATGTATTTGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR TCA 90 bp | AGAGTCCCACAGGAGTTCCCGTATGTTTTCTCCAAGCCATTCTCGAAATCTCGAGGTTCGCGGGGCAGCTaGAGACCTTGTCGCACTCGG | + |
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Preference number: 4 (lower is better) Translates to: RVPQEFPYVFSKPFSKSRGSRGS*RPCRTR Trigger: CCGAGTGCGACAAGGTCTTCAGCTGCCCCGCGAACC...TCGAGATTTCGAGAATGGCTTGGAGAAAACATACGGGAACTCCTGTGGGACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | CCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCTGGACGGGCAGTACTTaGAGGAGAAAATCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: PVHPRGCGSSLPSGLTSVWTGST*RRKSAE Trigger: CTCAGCAGATTTTCTCCTGCAAGTACTGCCCGTCCA...GACTGATGTCAAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CCA 90 bp | TTGCAGGCGTTCACTGCGATTTTCCATAGGAACTACAAACCCAAGGGAATCCATGCCAAAACCCGGAGTTaGTGCACGGGCCGAGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: LQAFTAIFHRNYKPKGIHAKTRS*CTGRAR Trigger: ACGGGCTCGGCCCGTGCACCAACTCCGGGTTTTGGC...ATGGATTCCCTTGGGTTTGTAGTTCCTATGGAAAATCGCAGTGAACGCCTGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR TCA 90 bp | CTCTCCTCAGGCACCATGACTGAGAGTTTTAAGAGGGAAGGTATGGGAAGGAAACGGGCTCCTCCTCTTTaGTCTTCAGACCCAGCACCG | + |
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Preference number: 4 (lower is better) Translates to: LSSGTMTESFKREGMGRKRAPPL*SSDPAP Trigger: CGGTGCTGGGTCTGAAGATCAAAGAGGAGGAGCCCG...TTTCCTTCCCATACCTTCCCTCTTAAAACTCTCAGTCATGGTGCCTGAGGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | ACACCTGCCCTGCCTCCAAAGCCTAGCTTAAAAGAAGGGACATACATTCAGTTAGGGTGCCCAGGTGCTTaGGCAGATAGGCTTGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: TPALPPKPSLKEGTYIQLGCPGA*ADRLGD Trigger: GTCGCCAAGCCTATCTGCGCAAGCACCTGGGCACCC...TAACTGAATGTATGTCCCTTCTTTTAAGCTAGGCTTTGGAGGCAGGGCAGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | GCCAAATACATACCTGCTCTAGAGAGGGGGTTTTACATCTTGTTGCCCTCTCCTAGCCCGTCTCATGGGTaGCCAGGTGCTTGCGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: AKYIPALERGFYILLPSPSPSHG*PGACAD Trigger: ATCTGCGCAAGCACCTGGGCACCCATGAGACGGGCT...AGGAGAGGGCAACAAGATGTAAAACCCCCTCTCTAGAGCAGGTATGTATTTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CCA 90 bp | TGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCACAAAGCTTGATTCACAGAGCTGCCGGAGCGCTTaGTTCGCTTCACCAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: CGSSLPSGLTSVTKLDSQSCRSA*FASPGS Trigger: GCTTCCTGGTGAAGCGAACCAAGCGCTCCGGCAGCT...CTGTGAATCAAGCTTTGTGACTGATGTCAAACCTGAAGGGAGGGAAGACCCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CCA 90 bp | TTGCAGGCGTTCACTGCGATTTTCCATAGGAACTACAAACCCAAGGGAATCCATCCAGCACCGGGGACGTaGTCACCTCATCTGCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LQAFTAIFHRNYKPKGIHPAPGT*SPHLRS Trigger: GCTTCGCAGATGAGGTGACCACGTCCCCGGTGCTGG...ATGGATTCCCTTGGGTTTGTAGTTCCTATGGAAAATCGCAGTGAACGCCTGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | AGAGTCCCACAGGAGTTCCCGTATGTTTTCTCCAAGCCATTCTCGAAATCTCGACGTGGTCACCTCATCTaGGAAGCTCAGCCTTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: RVPQEFPYVFSKPFSKSRRGHLI*EAQPSH Trigger: GTGAGAAGGCTGAGCTTCGCAGATGAGGTGACCACG...TCGAGATTTCGAGAATGGCTTGGAGAAAACATACGGGAACTCCTGTGGGACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | AAGGAAACTGGAAATTGCAAGATGAAGAGAGTCCCACAGGAGTTCCCGTATGTTTCCTCGCGGACAGCGTaGCATAGCCGGTGCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: KETGNCKMKRVPQEFPYVSSRTA*HSRCFS Trigger: AGAGAAGCACCGGCTATGGCACGCTGTCCGCGAGGA...AACATACGGGAACTCCTGTGGGACTCTCTTCATCTTGCAATTTCCAGTTTCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR GCA 90 bp | ACTGGAAATTGCAAGATGAAGAGAGTCCCACAGGAGTTCCCGTATGTTTTCTCCTGGCACTTATTGATGTaGCGGGTCAAGCCGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: TGNCKMKRVPQEFPYVFSWHLLM*RVKPGE Trigger: CTCCCCCGGCTTGACCCGGCACATCAATAAGTGCCA...GGAGAAAACATACGGGAACTCCTGTGGGACTCTCTTCATCTTGCAATTTCCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR TCA 90 bp | TGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCACAAAGCTTGATTCACAGCGACGGAACTTTTTGTaGCAATACGGGCACACGAAG | + |
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Preference number: 4 (lower is better) Translates to: CGSSLPSGLTSVTKLDSQRRNFL*QYGHTK Trigger: CTTCGTGTGCCCGTATTGTCACAAAAAGTTCCGTCG...CTGTGAATCAAGCTTTGTGACTGATGTCAAACCTGAAGGGAGGGAAGACCCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CAA 72 bp | AGGAAGGGGAAATCTCATTGTAGTGGGAGTGAGGACTaGAAGCTGTCAGCGTTGACCGTGAATTTTTATGCC | + |
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Preference number: 4 (lower is better) Translates to: RKGKSHCSGSED*KLSALTVNFYA Trigger: GGCATAAAAATTCACGGTCAACGCTGACAGCTTCAAGTCCTCACTCCCACTACAATGAGATTTCCCCTTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CAA 72 bp | GTTTTAAGAGGGAAGGTATGGGAAGGAAACTGGAAATaGCAAGATGAAGAGAGTCCCACAGGAGTTCCCGTA | + |
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Preference number: 4 (lower is better) Translates to: VLRGKVWEGNWK*QDEESPTGVPV Trigger: TACGGGAACTCCTGTGGGACTCTCTTCATCTTGCAATTTCCAGTTTCCTTCCCATACCTTCCCTCTTAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| 3UTR CAA 72 bp | TACATTTATTTGGCAGAACCATTCTTACAAATCCATTaGTCAAAGAGCACTCTGCCAGTGTCCCAGACTCTG | + |
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Preference number: 4 (lower is better) Translates to: YIYLAEPFLQIH*SKSTLPVSQTL Trigger: CAGAGTCTGGGACACTGGCAGAGTGCTCTTTGACAAATGGATTTGTAAGAATGGTTCTGCCAAATAAATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS CCA 90 bp | CCTCCCCGGAGGTCACGGCCGCGGGCGCCGCGGAGCAGAAGGCGGTaGCGCTGGGGAAGGACTCCGCAGAGACCGGAGAGCGCAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PPRRSRPRAPRSRRR*RWGRTPQRPESAGS Trigger: GCTGCCTGCGCTCTCCGGTCTCTGCGGAGTCCTTCCCCAGCGCCACCGCCTTCTGCTCCGCGGCGCCCGCGGCCGTGACCTCCGGGGAGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 90 bp | CCTGCGGGTGCTGATCGTCGGTCCGCGGCACGCGGCCGTTCTCCTTaGCCGTCGCCAGGGAAGGGTCCGGAGGGGTCAGAGGCGCGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PAGADRRSAARGRSP*PSPGKGPEGSEARG Trigger: CCCACGCGCCTCTGACCCCTCCGGACCCTTCCCTGGCGACGGGCAAGGAGAACGGCCGCGTGCCGCGGACCGACGATCAGCACCCGCAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 90 bp | TGGGGAGGTTTACTCGCGGCGCAGGCAGGCGTGGGACGTGGCTTGTaGCAGCGGCGGTGGGAGGCGAGGTTCGCGGGGCAGCTGAAGACC | + |
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Preference number: 5 (lower is better) Translates to: WGGLLAAQAGVGRGL*QRRWEARFAGQLKT Trigger: GGTCTTCAGCTGCCCCGCGAACCTCGCCTCCCACCGCCGCTGGCACAAGCCACGTCCCACGCCTGCCTGCGCCGCGAGTAAACCTCCCCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS CCA 90 bp | CGCGGACGGGAAGTGCGCCCCGCAAAGCGGGCACGCAAAGGTGAGTaGGGCCGTGCGCTCCGAGCCAAAACCCGGAGTTGGTGCACGGGC | + |
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Preference number: 5 (lower is better) Translates to: RGREVRPAKRARKGE*GRALRAKTRSWCTG Trigger: GCCCGTGCACCAACTCCGGGTTTTGGCTCGGAGCGCACGGCCCCACTCACCTTTGCGTGCCCGCTTTGCGGGGCGCACTTCCCGTCCGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS CCA 90 bp | CGCAAAGGTGAGTGGGGCCGTGCGCTCCGAGCCAAAACCCGGAGTTaGTGCACGGGCCGAGCCCGTCTCATGGGTGCCCAGGTGCTTGCG | + |
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Preference number: 5 (lower is better) Translates to: RKGEWGRALRAKTRS*CTGRARLMGAQVLA Trigger: CGCAAGCACCTGGGCACCCATGAGACGGGCTCGGCCCGTGCACCAACTCCGGGTTTTGGCTCGGAGCGCACGGCCCCACTCACCTTTGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 90 bp | AAAGGTGAGTGGGGCCGTGCGCTCCGAGCCAAAACCCGGAGTTGGTaGACGGGCCGAGCCCGTCTCATGGGTGCCCAGGTGCTTGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: KGEWGRALRAKTRSW*TGRARLMGAQVLAQ Trigger: CTGCGCAAGCACCTGGGCACCCATGAGACGGGCTCGGCCCGTGCACCAACTCCGGGTTTTGGCTCGGAGCGCACGGCCCCACTCACCTTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 90 bp | GGTGCCCCGACCAAGGCGGGCAGTAGCAGCTCCTCGCGGACAGCGTaGCATAGCCGGTGCTTCTCTCGAATGTCCGCGGACGGGAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: GAPTKAGSSSSSRTA*HSRCFSRMSADGKC Trigger: GCACTTCCCGTCCGCGGACATTCGAGAGAAGCACCGGCTATGGCACGCTGTCCGCGAGGAGCTGCTACTGCCCGCCTTGGTCGGGGCACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS CCA 90 bp | TGTGACAATACGGGCACACGAAGACCTCGGACGTCGCTCCTGCGCTaGCACCGCTCGACCCCGGCCCGTGGCGCCCTAGAATCACCTCGG | + |
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Preference number: 5 (lower is better) Translates to: CDNTGTRRPRTSLLR*HRSTPARGALESPR Trigger: CCGAGGTGATTCTAGGGCGCCACGGGCCGGGGTCGAGCGGTGCCAGCGCAGGAGCGACGTCCGAGGTCTTCGTGTGCCCGTATTGTCACA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 90 bp | AAGGCGGGCAGTAGCAGCTCCTCGCGGACAGCGTGCCATAGCCGGTaGTTCTCTCGAATGTCCGCGGACGGGAAGTGCGCCCCGCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: KAGSSSSSRTACHSR*FSRMSADGKCAPQS Trigger: GCTTTGCGGGGCGCACTTCCCGTCCGCGGACATTCGAGAGAAGCACCGGCTATGGCACGCTGTCCGCGAGGAGCTGCTACTGCCCGCCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CAA 90 bp | CCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTGACATCAGTCGGGCAGCTGAAGACCTaGTCGCACTCGGGACAGCGG | + |
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Preference number: 5 (lower is better) Translates to: PVHPRGCGSSLPSGLTSVGQLKT*SHSGQR Trigger: CCGCTGTCCCGAGTGCGACAAGGTCTTCAGCTGCCC...GACTGATGTCAAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CAA 90 bp | CAACAGCCTCAGATTTCCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCCTGCAGCAGCAGCACTaGCCGGCTTTCGGAGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: QQPQISCPSTRVWVFPPFLQQQH*PAFGGV Trigger: CACCCCTCCGAAAGCCGGCAAGTGCTGCTGCTGCAG...GAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGGCTGTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 90 bp | GAGTTGGTGCACGGGCCGAGCCCGTCTCATGGGTGCCCAGGTGCTTaGGCAGATAGGCTTGGCGACGGAACTTTTTGTGACAATACGGGC | + |
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Preference number: 5 (lower is better) Translates to: ELVHGPSPSHGCPGA*ADRLGDGTFCDNTG Trigger: GCCCGTATTGTCACAAAAAGTTCCGTCGCCAAGCCTATCTGCGCAAGCACCTGGGCACCCATGAGACGGGCTCGGCCCGTGCACCAACTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CAA 90 bp | CTCTCCTCAGGCACCATGACTGAGAGTTTTAAGAGGGAAGGTATGGGAAGGAAAAGCCAAAACCCGGAGTaGGTGCACGGGCCGAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: LSSGTMTESFKREGMGRKSQNPE*VHGPSP Trigger: CGGGCTCGGCCCGTGCACCAACTCCGGGTTTTGGCT...TTTCCTTCCCATACCTTCCCTCTTAAAACTCTCAGTCATGGTGCCTGAGGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CAA 90 bp | CCTCAGATTTCCTGTCCATCCACGCGGGTGTGGGTCTTCCCTCCCTTCAGGTTTCTTGCGCAGATAGGCTaGGCGACGGAACTTTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: PQISCPSTRVWVFPPFRFLAQIG*ATELFV Trigger: CACAAAAAGTTCCGTCGCCAAGCCTATCTGCGCAAG...AAACCTGAAGGGAGGGAAGACCCACACCCGCGTGGATGGACAGGAAATCTGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS-3UTR CAA 90 bp | GATGAAGAGAGTCCCACAGGAGTTCCCGTATGTTTTCTCCAAGCCATTCTCGAACCGGGCTCCTCCTCTTaGATCTTCAGACCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: DEESPTGVPVCFLQAILEPGSSS*IFRPST Trigger: GGTGCTGGGTCTGAAGATCAAAGAGGAGGAGCCCGG...TTCGAGAATGGCTTGGAGAAAACATACGGGAACTCCTGTGGGACTCTCTTCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS TCA 72 bp | GCCTGTAGGCCCGGGCGCGCGGCGCTGTCCCGGTGCTaGCCGTCTCCGGAGCTGTCCGGAGCCTGCGGGTGC | + |
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Preference number: 6 (lower is better) Translates to: ACRPGRAALSRC*PSPELSGACGC Trigger: GCACCCGCAGGCTCCGGACAGCTCCGGAGACGGTCAGCACCGGGACAGCGCCGCGCGCCCGGGCCTACAGGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 72 bp | ACAATACGGGCACACGAAGACCTCGGACGTCGCTCCTaGGCTGGCACCGCTCGACCCCGGCCCGTGGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: TIRAHEDLGRRS*AGTARPRPVAP Trigger: GGGCGCCACGGGCCGGGGTCGAGCGGTGCCAGCGCAGGAGCGACGTCCGAGGTCTTCGTGTGCCCGTATTGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS CCA 72 bp | ACGGGCACACGAAGACCTCGGACGTCGCTCCTGCGCTaGCACCGCTCGACCCCGGCCCGTGGCGCCCTAGAA | + |
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Preference number: 6 (lower is better) Translates to: TGTRRPRTSLLR*HRSTPARGALE Trigger: TTCTAGGGCGCCACGGGCCGGGGTCGAGCGGTGCCAGCGCAGGAGCGACGTCCGAGGTCTTCGTGTGCCCGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 72 bp | GGAAAAGCGGCTCCACCGGGCGCGCGCGGTAGGAGCTaGCGGAGCGCTTGGTTCGCTTCACCAGGAAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: GKAAPPGARGRS*RSAWFASPGSP Trigger: GGGGCTTCCTGGTGAAGCGAACCAAGCGCTCCGGCAGCTCCTACCGCGCGCGCCCGGTGGAGCCGCTTTTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 72 bp | TGGGGCCGTGCGCTCCGAGCCAAAACCCGGAGTTGGTaGACGGGCCGAGCCCGTCTCATGGGTGCCCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: WGRALRAKTRSW*TGRARLMGAQV Trigger: CACCTGGGCACCCATGAGACGGGCTCGGCCCGTGCACCAACTCCGGGTTTTGGCTCGGAGCGCACGGCCCCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS CCA 72 bp | GAGTGGGGCCGTGCGCTCCGAGCCAAAACCCGGAGTTaGTGCACGGGCCGAGCCCGTCTCATGGGTGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: EWGRALRAKTRS*CTGRARLMGAQ Trigger: CTGGGCACCCATGAGACGGGCTCGGCCCGTGCACCAACTCCGGGTTTTGGCTCGGAGCGCACGGCCCCACTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 72 bp | AGCCGGTGCTTCTCTCGAATGTCCGCGGACGGGAAGTaGGCCCCGCAAAGCGGGCACGCAAAGGTGAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SRCFSRMSADGK*APQSGHAKVSG Trigger: CCCACTCACCTTTGCGTGCCCGCTTTGCGGGGCGCACTTCCCGTCCGCGGACATTCGAGAGAAGCACCGGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 72 bp | AGTAGCAGCTCCTCGCGGACAGCGTGCCATAGCCGGTaGTTCTCTCGAATGTCCGCGGACGGGAAGTGCGCC | + |
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Preference number: 6 (lower is better) Translates to: SSSSSRTACHSR*FSRMSADGKCA Trigger: GGCGCACTTCCCGTCCGCGGACATTCGAGAGAAGCACCGGCTATGGCACGCTGTCCGCGAGGAGCTGCTACT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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| CDS GCA 72 bp | ACCAAGGCGGGCAGTAGCAGCTCCTCGCGGACAGCGTaGCATAGCCGGTGCTTCTCTCGAATGTCCGCGGAC | + |
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Preference number: 6 (lower is better) Translates to: TKAGSSSSSRTA*HSRCFSRMSAD Trigger: GTCCGCGGACATTCGAGAGAAGCACCGGCTATGGCACGCTGTCCGCGAGGAGCTGCTACTGCCCGCCTTGGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051857.5 |
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