RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for INSIG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045294

Ensembl transcript IDs: ENSMUST00000059155.11

Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTGAGGTGAGAAGTCCAGCATCGCAGTGCAGAACCCTGACTTTGTaGTGCCCTCGGCTTTCAGTGAGATTGTCGTCTACAAACCTCCCG +
Preference number: 1 (lower is better)
Translates to: TEVRSPASQCRTLTL*CPRLSVRLSSTNLP
Trigger: CGGGAGGTTTGTAGACGACAATCTCACTGAAAGCCGAGGGCAGCACAAAGTCAGGGTTCTGCACTGCGATGCTGGACTTCTCACCTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CCA 90 bp CAGCCTGAGCGTGACCTGGAGATATGGCTGCACTATAGGTCCTACTaGGAGATGATCTTCCTCCAACTCACTGCTGCTCTCAACCCCTCT +
Preference number: 1 (lower is better)
Translates to: QPERDLEIWLHYRSY*EMIFLQLTAALNPS
Trigger: AGAGGGGTTGAGAGCAGCAGTGAGTTGGAGGAAGATCATCTCCCAGTAGGACCTATAGTGCAGCCATATCTCCAGGTCACGCTCAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR TCA 90 bp CACAAAGCTGGAGTATGTCAGAGGACTAGTGTGCAGTGGAGGGTATaGCTGAGGGACGTCACGGCTGACACAGTATTGCTGAGTGTGCCT +
Preference number: 1 (lower is better)
Translates to: HKAGVCQRTSVQWRV*LRDVTADTVLLSVP
Trigger: AGGCACACTCAGCAATACTGTGTCAGCCGTGACGTCCCTCAGTCATACCCTCCACTGCACACTAGTCCTCTGACATACTCCAGCTTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CCA 90 bp CAACCTGTTACGAAGCAATCACAGATTGCAAGCTCCACAGGGCTGTaGAAGAGTCCTCTCCACCCTGGAGTGACAGAGACACAATTTCGG +
Preference number: 1 (lower is better)
Translates to: QPVTKQSQIASSTGL*KSPLHPGVTETQFR
Trigger: CCGAAATTGTGTCTCTGTCACTCCAGGGTGGAGAGGACTCTTCCACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCGTAACAGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR TCA 90 bp AGCGTGACCTGGAGATATGGCTGCACTATAGGTCCTACTGGGAGATaGTCTTCCTCCAACTCACTGCTGCTCTCAACCCCTCTTTACACA +
Preference number: 1 (lower is better)
Translates to: SVTWRYGCTIGPTGR*SSSNSLLLSTPLYT
Trigger: TGTGTAAAGAGGGGTTGAGAGCAGCAGTGAGTTGGAGGAAGATCATCTCCCAGTAGGACCTATAGTGCAGCCATATCTCCAGGTCACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR GCA 90 bp TGCTGTCCAACGCACATAGGACACTGCGTAATTAACACAGTGACGTaGACACTCAACCTGTTACGAAGCAATCACAGATTGCAAGCTCCA +
Preference number: 1 (lower is better)
Translates to: CCPTHIGHCVINTVT*TLNLLRSNHRLQAP
Trigger: TGGAGCTTGCAATCTGTGATTGCTTCGTAACAGGTTGAGTGTGCACGTCACTGTGTTAATTACGCAGTGTCCTATGTGCGTTGGACAGCA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CCA 90 bp AGTGAACATGTCTTTAGGAGTCATTTATCGTCAGCCCAGCCTAAATaGAACATTGAGAAAAAGATCATCTTCATCACACCCAGGACCAGT +
Preference number: 1 (lower is better)
Translates to: SEHVFRSHLSSAQPK*NIEKKIIFITPRTS
Trigger: ACTGGTCCTGGGTGTGATGAAGATGATCTTTTTCTCAATGTTCCATTTAGGCTGGGCTGACGATAAATGACTCCTAAAGACATGTTCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR TCA 90 bp ACCCAGGTGTCCACAGGTACAGAGCTTCTGCCCCGCCTGGGGACCAACGACTGTCAAAGAAGACAGGTGTaGGGGTGGGGGAGCAAGGTA +
Preference number: 2 (lower is better)
Translates to: TQVSTGTELLPRLGTNDCQRRQV*GWGSKV
Trigger: TACCTTGCTCCCCCACCCTCACACCTGTCTTCTTTG...ACAGTCGTTGGTCCCCAGGCGGGGCAGAAGCTCTGTACCTGTGGACACCTGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR TCA 90 bp ACCCAGGTGTCCACAGGTACAGAGCTTCTGCCCCGCCTGGGGACCAACGACTGTCCCTCCTTTGGGCACTaGCACAAAACTGCTAGTTGG +
Preference number: 2 (lower is better)
Translates to: TQVSTGTELLPRLGTNDCPSFGH*HKTASW
Trigger: CCAACTAGCAGTTTTGTGTCAGTGCCCAAAGGAGGG...ACAGTCGTTGGTCCCCAGGCGGGGCAGAAGCTCTGTACCTGTGGACACCTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR GCA 90 bp ACCCAGGTGTCCACAGGTACAGAGCTTCTGCCCCGCCTGGGGACCAACGACTGTCTCCGGAATAGCTCGTaGGGTAACAAAAATTACAAA +
Preference number: 2 (lower is better)
Translates to: TQVSTGTELLPRLGTNDCLRNSS*GNKNYK
Trigger: TTTGTAATTTTTGTTACCGCACGAGCTATTCCGGAG...ACAGTCGTTGGTCCCCAGGCGGGGCAGAAGCTCTGTACCTGTGGACACCTGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR GCA 90 bp TACGAAGCAATCACAGATTGCAAGCTCCACAGGGCTGTGGAAGAGTCCTCTCCAAGTCCAGCATCGCAGTaGAGAACCCTGACTTTGTGC +
Preference number: 2 (lower is better)
Translates to: YEAITDCKLHRAVEESSPSPASQ*RTLTLC
Trigger: GCACAAAGTCAGGGTTCTGCACTGCGATGCTGGACT...TGGAGAGGACTCTTCCACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CCA 90 bp ACGAAGCAATCACAGATTGCAAGCTCCACAGGGCTGTGGAAGAGTCCTCTCCACAGCCTGAGCGTGACCTaGAGATATGGCTGCACTATA +
Preference number: 2 (lower is better)
Translates to: TKQSQIASSTGLWKSPLHSLSVT*RYGCTI
Trigger: TATAGTGCAGCCATATCTCCAGGTCACGCTCAGGCT...GTGGAGAGGACTCTTCCACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 90 bp GATTGGTTTTCATACACATTGCACTTGAAGTTGAAGACCCAATCCTaGCAAGTTAGGTCCCACGTGTTGTGTTCTATGCTGTCCAACGCA +
Preference number: 2 (lower is better)
Translates to: DWFSYTLHLKLKTQS*QVRSHVLCSMLSNA
Trigger: TGCGTTGGACAGCATAGAACACAACACGTGGGACCTAACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR GCA 90 bp GAAACTTTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAAACCCTGACTTTGTGCTaGCCTCGGCTTTCAGTGAGA +
Preference number: 2 (lower is better)
Translates to: ETLRTVPKSSTTHFLLAKTLTLC*PRLSVR
Trigger: TCTCACTGAAAGCCGAGGGCAGCACAAAGTCAGGGT...TTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAAAGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR GCA 90 bp TTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAAGTAGTTACCTGGAGATATGGCTaGACTATAGGTCCTACTGGG +
Preference number: 2 (lower is better)
Translates to: LRTVPKSSTTHFLLAKVVTWRYG*TIGPTG
Trigger: CCCAGTAGGACCTATAGTGCAGCCATATCTCCAGGT...AACTACTTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CCA 90 bp CAATCAAGTGCATCACCAAGATCACTTATTTTTCTTCCAGTCACTGTAGCTTGTTCAACCTCCCTCCTTTaGGCACTGACACAAAACTGC +
Preference number: 2 (lower is better)
Translates to: QSSASPRSLIFLPVTVACSTSLL*ALTQNC
Trigger: GCAGTTTTGTGTCAGTGCCCAAAGGAGGGAGGTTGA...ACAAGCTACAGTGACTGGAAGAAAAATAAGTGATCTTGGTGATGCACTTGATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 90 bp AGAATACAAGGCTCAGATTGGTTTTCATACACATTGCACTTGAAGTaGAAGACCCAATCCTTGCAAGTTAGGTCCCACGTGTTGTGTTCT +
Preference number: 2 (lower is better)
Translates to: RIQGSDWFSYTLHLK*KTQSLQVRSHVLCS
Trigger: AGAACACAACACGTGGGACCTAACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCAATCTGAGCCTTGTATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 90 bp TTTACGAGAATACAAGGCTCAGATTGGTTTTCATACACATTGCACTaGAAGTTGAAGACCCAATCCTTGCAAGTTAGGTCCCACGTGTTG +
Preference number: 2 (lower is better)
Translates to: FTRIQGSDWFSYTLH*KLKTQSLQVRSHVL
Trigger: CAACACGTGGGACCTAACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCAATCTGAGCCTTGTATTCTCGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CCA 90 bp CCAAGATCACTTATTTTTCTTCCAGTCACTGTAGCTTGTGCAAGACACTCCAGTCTTTCACATACAGCCTaGGATGGAATGTTCCAAAGA +
Preference number: 2 (lower is better)
Translates to: PRSLIFLPVTVACARHSSLSHTA*DGMFQR
Trigger: TCTTTGGAACATTCCATCCCAGGCTGTATGTGAAAG...ACTGGAGTGTCTTGCACAAGCTACAGTGACTGGAAGAAAAATAAGTGATCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CCA 90 bp GAAACTTTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAATCAGCCCAGCCTAAATaGAACATTGAGAAAAAGATC +
Preference number: 2 (lower is better)
Translates to: ETLRTVPKSSTTHFLLAKSAQPK*NIEKKI
Trigger: GATCTTTTTCTCAATGTTCCATTTAGGCTGGGCTGA...TTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAAAGTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CAA 90 bp ACCCAGGTGTCCACAGGTACAGAGCTTCTGCCCCGCCTGGGGACCAACGACTGTACATTGCACTTGAAGTaGAAGACCCAATCCTTGCAA +
Preference number: 3 (lower is better)
Translates to: TQVSTGTELLPRLGTNDCTLHLK*KTQSLQ
Trigger: TTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGT...ACAGTCGTTGGTCCCCAGGCGGGGCAGAAGCTCTGTACCTGTGGACACCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR GCA 72 bp AGAAGTCCAGCATCGCAGTGCAGAACCCTGACTTTGTaGTGCCCTCGGCTTTCAGTGAGATTGTCGTCTACA +
Preference number: 3 (lower is better)
Translates to: RSPASQCRTLTL*CPRLSVRLSST
Trigger: TGTAGACGACAATCTCACTGAAAGCCGAGGGCAGCACAAAGTCAGGGTTCTGCACTGCGATGCTGGACTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CCA 72 bp AAGCTCCACAGGGCTGTGGAAGAGTCCTCTCCACCCTaGAGTGACAGAGACACAATTTCGGCTCATTATGAC +
Preference number: 3 (lower is better)
Translates to: KLHRAVEESSPP*SDRDTISAHYD
Trigger: GTCATAATGAGCCGAAATTGTGTCTCTGTCACTCCAGGGTGGAGAGGACTCTTCCACAGCCCTGTGGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CAA 90 bp ACGAAGCAATCACAGATTGCAAGCTCCACAGGGCTGTGGAAGAGTCCTCTCCACATCAACCTCCCTCCTTaGGGCACTGACACAAAACTG +
Preference number: 3 (lower is better)
Translates to: TKQSQIASSTGLWKSPLHINLPP*GTDTKL
Trigger: CAGTTTTGTGTCAGTGCCCAAAGGAGGGAGGTTGAT...GTGGAGAGGACTCTTCCACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR TCA 72 bp TGGAGATATGGCTGCACTATAGGTCCTACTGGGAGATaGTCTTCCTCCAACTCACTGCTGCTCTCAACCCCT +
Preference number: 3 (lower is better)
Translates to: WRYGCTIGPTGR*SSSNSLLLSTP
Trigger: AGGGGTTGAGAGCAGCAGTGAGTTGGAGGAAGATCATCTCCCAGTAGGACCTATAGTGCAGCCATATCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CAA 90 bp CCAAGATCACTTATTTTTCTTCCAGTCACTGTAGCTTGTGCAAGACACTCCAGTCGAAGCAATCACAGATaGCAAGCTCCACAGGGCTGT +
Preference number: 3 (lower is better)
Translates to: PRSLIFLPVTVACARHSSRSNHR*QAPQGC
Trigger: ACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCG...ACTGGAGTGTCTTGCACAAGCTACAGTGACTGGAAGAAAAATAAGTGATCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CAA 90 bp CAATCAAGTGCATCACCAAGATCACTTATTTTTCTTCCAGTCACTGTAGCTTGTTGCAGAACCCTGACTTaGTGCTGCCCTCGGCTTTCA +
Preference number: 3 (lower is better)
Translates to: QSSASPRSLIFLPVTVACCRTLT*CCPRLS
Trigger: TGAAAGCCGAGGGCAGCACAAAGTCAGGGTTCTGCA...ACAAGCTACAGTGACTGGAAGAAAAATAAGTGATCTTGGTGATGCACTTGATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR GCA 72 bp GTCCTACTGGGAGATGATCTTCCTCCAACTCACTGCTaGTCTCAACCCCTCTTTACACAACCCTTTATTTTA +
Preference number: 3 (lower is better)
Translates to: VLLGDDLPPTHC*SQPLFTQPFIL
Trigger: TAAAATAAAGGGTTGTGTAAAGAGGGGTTGAGAGCAGCAGTGAGTTGGAGGAAGATCATCTCCCAGTAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR GCA 72 bp ACGCACATAGGACACTGCGTAATTAACACAGTGACGTaGACACTCAACCTGTTACGAAGCAATCACAGATTG +
Preference number: 3 (lower is better)
Translates to: THIGHCVINTVT*TLNLLRSNHRL
Trigger: CAATCTGTGATTGCTTCGTAACAGGTTGAGTGTGCACGTCACTGTGTTAATTACGCAGTGTCCTATGTGCGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR-3UTR CAA 90 bp TTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAAGTAGTTTGGTTTTCATACACATaGCACTTGAAGTTGAAGACC +
Preference number: 3 (lower is better)
Translates to: LRTVPKSSTTHFLLAKVVWFSYT*HLKLKT
Trigger: GGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCA...AACTACTTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR CCA 90 bp CTGAGTGTGCCTCCACGCACCTCTGAAATGACCCGAGAACCCTTCTCCGGAATAGCGCGCTGCATCCTGTaGTTCCCGCTCGCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: LSVPPRTSEMTREPFSGIARCIL*FPLAGP
Trigger: GGGGCCAGCGAGCGGGAACCACAGGATGCAGCGCGC...TATTCCGGAGAAGGGTTCTCGGGTCATTTCAGAGGTGCGTGGAGGCACACTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR TCA 90 bp ACGAAGCAATCACAGATTGCAAGCTCCACAGGGCTGTGGAAGAGTCCTCTCCACCGTCGGGGAAGAGCGTaGCATTCCGCTGGATCTGCA +
Preference number: 4 (lower is better)
Translates to: TKQSQIASSTGLWKSPLHRRGRA*HSAGSA
Trigger: TGCAGATCCAGCGGAATGTCACGCTCTTCCCCGACG...GTGGAGAGGACTCTTCCACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp ACGTGCACACTCAACCTGTTACGAAGCAATCACAGATaGCAAGCTCCACAGGGCTGTGGAAGAGTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: TCTLNLLRSNHR*QAPQGCGRVLS
Trigger: GGAGAGGACTCTTCCACAGCCCTGTGGAGCTTGCAATCTGTGATTGCTTCGTAACAGGTTGAGTGTGCACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR GCA 90 bp TTTCACATACAGCCTGGGATGGAATGTTCCAAAGAAGACAGGTGTGAGGGTGGGACATTCCGCTGGATCTaGAGCAGGTTGAGCACCAGG +
Preference number: 4 (lower is better)
Translates to: FHIQPGMECSKEDRCEGGTFRWI*SRLSTR
Trigger: CCTGGTGCTCAACCTGCTGCAGATCCAGCGGAATGT...CCCACCCTCACACCTGTCTTCTTTGGAACATTCCATCCCAGGCTGTATGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR CCA 90 bp TTTCACATACAGCCTGGGATGGAATGTTCCAAAGAAGACAGGTGTGAGGGTGGGAGCGTGACATTCCGCTaGATCTGCAGCAGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: FHIQPGMECSKEDRCEGGSVTFR*ICSRLS
Trigger: GCTCAACCTGCTGCAGATCCAGCGGAATGTCACGCT...CCCACCCTCACACCTGTCTTCTTTGGAACATTCCATCCCAGGCTGTATGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp ACCCTGACTTTGTGCTGCCCTCGGCTTTCAGTGAGATaGTCGTCTACAAACCTCCCGGCAGTAAAAAGCATC +
Preference number: 4 (lower is better)
Translates to: TLTLCCPRLSVR*SSTNLPAVKSI
Trigger: GATGCTTTTTACTGCCGGGAGGTTTGTAGACGACAATCTCACTGAAAGCCGAGGGCAGCACAAAGTCAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR TCA 90 bp TTTCACATACAGCCTGGGATGGAATGTTCCAAAGAAGACAGGTGTGAGGGTGGGCACTGTGACACCTCCTaGGAAAAATATACAGGGGAG +
Preference number: 4 (lower is better)
Translates to: FHIQPGMECSKEDRCEGGHCDTS*EKYTGE
Trigger: CTCCCCTGTATATTTTTCTCAGGAGGTGTCACAGTG...CCCACCCTCACACCTGTCTTCTTTGGAACATTCCATCCCAGGCTGTATGTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR CCA 90 bp TTTCACATACAGCCTGGGATGGAATGTTCCAAAGAAGACAGGTGTGAGGGTGGGTCTCTTGAACTTGTGTaGTTCTCCCAGGTGACTGTC +
Preference number: 4 (lower is better)
Translates to: FHIQPGMECSKEDRCEGGSLELV*FSQVTV
Trigger: GACAGTCACCTGGGAGAACCACACAAGTTCAAGAGA...CCCACCCTCACACCTGTCTTCTTTGGAACATTCCATCCCAGGCTGTATGTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR TCA 90 bp GAAACTTTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAATGGCACTGGCGTGGTTaGTGCCAACGAACACGGCAA +
Preference number: 4 (lower is better)
Translates to: ETLRTVPKSSTTHFLLAKWHWRG*CQRTRQ
Trigger: TTGCCGTGTTCGTTGGCATCAACCACGCCAGTGCCA...TTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAAAGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp GGCTCAGATTGGTTTTCATACACATTGCACTTGAAGTaGAAGACCCAATCCTTGCAAGTTAGGTCCCACGTG +
Preference number: 4 (lower is better)
Translates to: GSDWFSYTLHLK*KTQSLQVRSHV
Trigger: CACGTGGGACCTAACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCAATCTGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp GGAGTCATTTATCGTCAGCCCAGCCTAAATGGAACATaGAGAAAAAGATCATCTTCATCACACCCAGGACCA +
Preference number: 4 (lower is better)
Translates to: GVIYRQPSLNGT*RKRSSSSHPGP
Trigger: TGGTCCTGGGTGTGATGAAGATGATCTTTTTCTCAATGTTCCATTTAGGCTGGGCTGACGATAAATGACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp ACTTCATCTCTGTTAAGCACCATCAACCTCCCTCCTTaGGGCACTGACACAAAACTGCTAGTTGGTAATTCA +
Preference number: 4 (lower is better)
Translates to: TSSLLSTINLPP*GTDTKLLVGNS
Trigger: TGAATTACCAACTAGCAGTTTTGTGTCAGTGCCCAAAGGAGGGAGGTTGATGGTGCTTAACAGAGATGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp TCATACACATTGCACTTGAAGTTGAAGACCCAATCCTaGCAAGTTAGGTCCCACGTGTTGTGTTCTATGCTG +
Preference number: 4 (lower is better)
Translates to: SYTLHLKLKTQS*QVRSHVLCSML
Trigger: CAGCATAGAACACAACACGTGGGACCTAACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR TCA 90 bp GAAACTTTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAATGTGGTTCTCCCAGGTaGCTGTCAATACAGGGATAC +
Preference number: 4 (lower is better)
Translates to: ETLRTVPKSSTTHFLLAKCGSPR*LSIQGY
Trigger: GTATCCCTGTATTGACAGTCACCTGGGAGAACCACA...TTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAAAGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp ATACAAGGCTCAGATTGGTTTTCATACACATTGCACTaGAAGTTGAAGACCCAATCCTTGCAAGTTAGGTCC +
Preference number: 4 (lower is better)
Translates to: IQGSDWFSYTLH*KLKTQSLQVRS
Trigger: GGACCTAACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCAATCTGAGCCTTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR TCA 90 bp TTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAAGTAGTTTTATACACAAGAAACTaGGTGATCAGCGTAGCTAGG +
Preference number: 4 (lower is better)
Translates to: LRTVPKSSTTHFLLAKVVLYTRN*VISVAR
Trigger: CCTAGCTACGCTGATCACTCAGTTTCTTGTGTATAA...AACTACTTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp ACGAGAATACAAGGCTCAGATTGGTTTTCATACACATaGCACTTGAAGTTGAAGACCCAATCCTTGCAAGTT +
Preference number: 4 (lower is better)
Translates to: TRIQGSDWFSYT*HLKLKTQSLQV
Trigger: AACTTGCAAGGATTGGGTCTTCAACTTCAAGTGCAATGTGTATGAAAACCAATCTGAGCCTTGTATTCTCGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
3UTR CAA 72 bp TTGGTACTAGTTACCATTTGTACAAACTCAGTCACTTaGGTTTGTTGTAACTGCTATAACTATTGGCAAAAG +
Preference number: 4 (lower is better)
Translates to: LVLVTICTNSVT*VCCNCYNYWQK
Trigger: CTTTTGCCAATAGTTATAGCAGTTACAACAAACCAAAGTGACTGAGTTTGTACAAATGGTAACTAGTACCAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 90 bp GTTCGGGGACTCCGGGGCCCTGCGGACAAGCGGCCGCCGCAATCATaGCTCGCGGGAGGCTGTACGGCCTCGCAGCGCCCGCGCTTGGAT +
Preference number: 5 (lower is better)
Translates to: VRGLRGPADKRPPQS*LAGGCTASQRPRLD
Trigger: ATCCAAGCGCGGGCGCTGCGAGGCCGTACAGCCTCCCGCGAGGCATGATTGCGGCGGCCGCTTGTCCGCAGGGCCCCGGAGTCCCCGAAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 90 bp ATGAGAAGAGCACTAGGCTCCGCTGCACCAAGTCGTGGTGCCAGCTaGCCGGCCGCGCGCTGCATCCTGTGGTTCCCGCTCGCTGGCCCC +
Preference number: 5 (lower is better)
Translates to: MRRALGSAAPSRGAS*PAARCILWFPLAGP
Trigger: GGGGCCAGCGAGCGGGAACCACAGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTCAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 90 bp ACGCCAAATGAGAAGAGCACTAGGCTCCGCTGCACCAAGTCGTGGTaGCAGCTGCCCGGCCGCGCGCTGCATCCTGTGGTTCCCGCTCGC +
Preference number: 5 (lower is better)
Translates to: TPNEKSTRLRCTKSW*QLPGRALHPVVPAR
Trigger: GCGAGCGGGAACCACAGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTCATTTGGCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 90 bp ACCAGGGCCAGGACCACGCCAAATGAGAAGAGCACTAGGCTCCGCTaGACCAAGTCGTGGTGCCAGCTGCCCGGCCGCGCGCTGCATCCT +
Preference number: 5 (lower is better)
Translates to: TRARTTPNEKSTRLR*TKSWCQLPGRALHP
Trigger: AGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTCATTTGGCGTGGTCCTGGCCCTGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 90 bp ACCACGCCAAATGAGAAGAGCACTAGGCTCCGCTGCACCAAGTCGTaGTGCCAGCTGCCCGGCCGCGCGCTGCATCCTGTGGTTCCCGCT +
Preference number: 5 (lower is better)
Translates to: TTPNEKSTRLRCTKS*CQLPGRALHPVVPA
Trigger: AGCGGGAACCACAGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTCATTTGGCGTGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 90 bp GACTGTCAATACAGGGATACAGTAAACCGACAACAGCCGCTGCCGTaGCACAGCACGGGGGCACCCACCAGGCGGAGGAGAAGATGGTGG +
Preference number: 5 (lower is better)
Translates to: DCQYRDTVNRQQPLP*HSTGAPTRRRRRWW
Trigger: CCACCATCTTCTCCTCCGCCTGGTGGGTGCCCCCGTGCTGTGGCACGGCAGCGGCTGTTGTCGGTTTACTGTATCCCTGTATTGACAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR CAA 90 bp ACCCAGGTGTCCACAGGTACAGAGCTTCTGCCCCGCCTGGGGACCAACGACTGTTTGGCACTGGCGTGGTaGATGCCAACGAACACGGCA +
Preference number: 5 (lower is better)
Translates to: TQVSTGTELLPRLGTNDCLALAW*MPTNTA
Trigger: TGCCGTGTTCGTTGGCATCAACCACGCCAGTGCCAA...ACAGTCGTTGGTCCCCAGGCGGGGCAGAAGCTCTGTACCTGTGGACACCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 90 bp GTGGCTATCACCTCGTCGGGGAAGAGCGTGACATTCCGCTGGATCTaGAGCAGGTTGAGCACCAGGGCCAGGACCACGCCAAATGAGAAG +
Preference number: 5 (lower is better)
Translates to: VAITSSGKSVTFRWI*SRLSTRARTTPNEK
Trigger: CTTCTCATTTGGCGTGGTCCTGGCCCTGGTGCTCAACCTGCTGCAGATCCAGCGGAATGTCACGCTCTTCCCCGACGAGGTGATAGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 90 bp AAGATGGTGGCTATCACCTCGTCGGGGAAGAGCGTGACATTCCGCTaGATCTGCAGCAGGTTGAGCACCAGGGCCAGGACCACGCCAAAT +
Preference number: 5 (lower is better)
Translates to: KMVAITSSGKSVTFR*ICSRLSTRARTTPN
Trigger: ATTTGGCGTGGTCCTGGCCCTGGTGCTCAACCTGCTGCAGATCCAGCGGAATGTCACGCTCTTCCCCGACGAGGTGATAGCCACCATCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 90 bp AAGGACAGCTGGACATTATTGGCAAAATCTAATTTGGCACTGGCGTaGTTGATGCCAACGAACACGGCAATACAGCGCATAACGCTGGCC +
Preference number: 5 (lower is better)
Translates to: KDSWTLLAKSNLALA*LMPTNTAIQRITLA
Trigger: GGCCAGCGTTATGCGCTGTATTGCCGTGTTCGTTGGCATCAACCACGCCAGTGCCAAATTAGATTTTGCCAATAATGTCCAGCTGTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 90 bp GTCCACCACAAACCCAAAGAGAGGGCTGCTAAAGTCAAGGACAGCTaGACATTATTGGCAAAATCTAATTTGGCACTGGCGTGGTTGATG +
Preference number: 5 (lower is better)
Translates to: VHHKPKERAAKVKDS*TLLAKSNLALAWLM
Trigger: CATCAACCACGCCAGTGCCAAATTAGATTTTGCCAATAATGTCCAGCTGTCCTTGACTTTAGCAGCCCTCTCTTTGGGTTTGTGGTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS-3UTR CAA 90 bp TTAAGAACCGTCCCAAAGTCTAGCACAACCCATTTTCTTTTAGCCAAAGTAGTTCTGGCCCATTCTCTCTaGAACTTGTGTGGTTCTCCC +
Preference number: 5 (lower is better)
Translates to: LRTVPKSSTTHFLLAKVVLAHSL*NLCGSP
Trigger: GGGAGAACCACACAAGTTCAAGAGAGAATGGGCCAG...AACTACTTTGGCTAAAAGAAAATGGGTTGTGCTAGACTTTGGGACGGTTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 72 bp CGTGGTGCCAGCTGCCCGGCCGCGCGCTGCATCCTGTaGTTCCCGCTCGCTGGCCCCGGGGCGCGTGCTCGG +
Preference number: 6 (lower is better)
Translates to: RGASCPAARCIL*FPLAGPGARAR
Trigger: CCGAGCACGCGCCCCGGGGCCAGCGAGCGGGAACCACAGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 72 bp CTCCGGGGCCCTGCGGACAAGCGGCCGCCGCAATCATaGCTCGCGGGAGGCTGTACGGCCTCGCAGCGCCCG +
Preference number: 6 (lower is better)
Translates to: LRGPADKRPPQS*LAGGCTASQRP
Trigger: CGGGCGCTGCGAGGCCGTACAGCCTCCCGCGAGGCATGATTGCGGCGGCCGCTTGTCCGCAGGGCCCCGGAG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 72 bp GAGAAGAGCACTAGGCTCCGCTGCACCAAGTCGTGGTaGCAGCTGCCCGGCCGCGCGCTGCATCCTGTGGTT +
Preference number: 6 (lower is better)
Translates to: EKSTRLRCTKSW*QLPGRALHPVV
Trigger: AACCACAGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 72 bp AGGACCACGCCAAATGAGAAGAGCACTAGGCTCCGCTaGACCAAGTCGTGGTGCCAGCTGCCCGGCCGCGCG +
Preference number: 6 (lower is better)
Translates to: RTTPNEKSTRLR*TKSWCQLPGRA
Trigger: CGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTCATTTGGCGTGGTCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 72 bp AATGAGAAGAGCACTAGGCTCCGCTGCACCAAGTCGTaGTGCCAGCTGCCCGGCCGCGCGCTGCATCCTGTG +
Preference number: 6 (lower is better)
Translates to: NEKSTRLRCTKS*CQLPGRALHPV
Trigger: CACAGGATGCAGCGCGCGGCCGGGCAGCTGGCACCACGACTTGGTGCAGCGGAGCCTAGTGCTCTTCTCATT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 72 bp ACCTCGTCGGGGAAGAGCGTGACATTCCGCTGGATCTaGAGCAGGTTGAGCACCAGGGCCAGGACCACGCCA +
Preference number: 6 (lower is better)
Translates to: TSSGKSVTFRWI*SRLSTRARTTP
Trigger: TGGCGTGGTCCTGGCCCTGGTGCTCAACCTGCTGCAGATCCAGCGGAATGTCACGCTCTTCCCCGACGAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS GCA 72 bp TACAGGGATACAGTAAACCGACAACAGCCGCTGCCGTaGCACAGCACGGGGGCACCCACCAGGCGGAGGAGA +
Preference number: 6 (lower is better)
Translates to: YRDTVNRQQPLP*HSTGAPTRRRR
Trigger: TCTCCTCCGCCTGGTGGGTGCCCCCGTGCTGTGGCACGGCAGCGGCTGTTGTCGGTTTACTGTATCCCTGTA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 72 bp GCTATCACCTCGTCGGGGAAGAGCGTGACATTCCGCTaGATCTGCAGCAGGTTGAGCACCAGGGCCAGGACC +
Preference number: 6 (lower is better)
Translates to: AITSSGKSVTFR*ICSRLSTRART
Trigger: GGTCCTGGCCCTGGTGCTCAACCTGCTGCAGATCCAGCGGAATGTCACGCTCTTCCCCGACGAGGTGATAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CAA 90 bp ACCTCGTCGGGGAAGAGCGTGACATTCCGCTGGATCTGCAGCAGGTaGAGCACCAGGGCCAGGACCACGCCAAATGAGAAGAGCACTAGG +
Preference number: 6 (lower is better)
Translates to: TSSGKSVTFRWICSR*STRARTTPNEKSTR
Trigger: CCTAGTGCTCTTCTCATTTGGCGTGGTCCTGGCCCTGGTGCTCAACCTGCTGCAGATCCAGCGGAATGTCACGCTCTTCCCCGACGAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CAA 90 bp AAACCCAAAGAGAGGGCTGCTAAAGTCAAGGACAGCTGGACATTATaGGCAAAATCTAATTTGGCACTGGCGTGGTTGATGCCAACGAAC +
Preference number: 6 (lower is better)
Translates to: KPKERAAKVKDSWTL*AKSNLALAWLMPTN
Trigger: GTTCGTTGGCATCAACCACGCCAGTGCCAAATTAGATTTTGCCAATAATGTCCAGCTGTCCTTGACTTTAGCAGCCCTCTCTTTGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CCA 72 bp TGGACATTATTGGCAAAATCTAATTTGGCACTGGCGTaGTTGATGCCAACGAACACGGCAATACAGCGCATA +
Preference number: 6 (lower is better)
Translates to: WTLLAKSNLALA*LMPTNTAIQRI
Trigger: TATGCGCTGTATTGCCGTGTTCGTTGGCATCAACCACGCCAGTGCCAAATTAGATTTTGCCAATAATGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11
CDS CAA 72 bp ACATTATTGGCAAAATCTAATTTGGCACTGGCGTGGTaGATGCCAACGAACACGGCAATACAGCGCATAACG +
Preference number: 6 (lower is better)
Translates to: TLLAKSNLALAW*MPTNTAIQRIT
Trigger: CGTTATGCGCTGTATTGCCGTGTTCGTTGGCATCAACCACGCCAGTGCCAAATTAGATTTTGCCAATAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059155.11