RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for INPP5B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028894

Ensembl transcript IDs: ENSMUST00000094782.10, ENSMUST00000153837.8, ENSMUST00000154229.2, ENSMUST00000184454.8

Found 216 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTaGGAGGCCTTGGAGTTGAGCAGAAAGGGAACAGGTGCCCTATGC +
Preference number: 1 (lower is better)
Translates to: LVSPEPPFFSALGGD*EALELSRKGTGALC
Trigger: GCATAGGGCACCTGTTCCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CCA 90 bp TGGCATGGAGAAGGGGCAGGTCTAGGCTCAGGTAGAAGAAACAGGTaGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGTTC +
Preference number: 1 (lower is better)
Translates to: WHGEGAGLGSGRRNR*LPFFQQPQTSLRQF
Trigger: GAACTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCTACCTGAGCCTAGACCTGCCCCTTCTCCATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CCA 90 bp GGACGGCATTTCTGTACAGGTAATCCACCATCATCCAGAGCTCTTTaGGGATTTCCATGGGGTTCTCCAACTGGCTCCTGTCATCTGCAG +
Preference number: 1 (lower is better)
Translates to: GRHFCTGNPPSSRAL*GFPWGSPTGSCHLQ
Trigger: CTGCAGATGACAGGAGCCAGTTGGAGAACCCCATGGAAATCCCCAAAGAGCTCTGGATGATGGTGGATTACCTGTACAGAAATGCCGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR TCA 90 bp CAGGAGAGGAGTAGTGAGGCTCAGAGTGGACCGCAGAGGAACTGGTaGATAAACTCTTGGGCCTTCTTCTTTTCCGCCATGTCAAGCTTT +
Preference number: 1 (lower is better)
Translates to: QERSSEAQSGPQRNW*INSWAFFFSAMSSF
Trigger: AAAGCTTGACATGGCGGAAAAGAAGAAGGCCCAAGAGTTTATTCACCAGTTCCTCTGCGGTCCACTCTGAGCCTCACTACTCCTCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR TCA 90 bp ATAAACTCTTGGGCCTTCTTCTTTTCCGCCATGTCAAGCTTTTGGTaGCGAGCTGGGTTCCGGAGCAGTAAGCTGCCAAATATGCTAGCT +
Preference number: 1 (lower is better)
Translates to: INSWAFFFSAMSSFW*RAGFRSSKLPNMLA
Trigger: AGCTAGCATATTTGGCAGCTTACTGCTCCGGAACCCAGCTCGTCACCAAAAGCTTGACATGGCGGAAAAGAAGAAGGCCCAAGAGTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR CCA 90 bp AAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTaGTCGATCATCCCAGTATCTAGACAGTCCCTTATATGGTCAAAC +
Preference number: 1 (lower is better)
Translates to: KSSKASATEWLLAQS*SIIPVSRQSLIWSN
Trigger: GTTTGACCATATAAGGGACTGTCTAGATACTGGGATGATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp ACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGGGTAGAAGAAACAGGTaGCTGCCATTCTTCCAGCAG +
Preference number: 2 (lower is better)
Translates to: TPFLQCSWGRLRGLGVEQGRRNR*LPFFQQ
Trigger: CTGCTGGAAGAATGGCAGCCACCTGTTTCTTCTACC...CTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp ATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCGGGTGTGCTAGCCAATaGCATGGAGAAGGGGCAGGT +
Preference number: 2 (lower is better)
Translates to: MRCSVRDMGNSLTACPGGGCASQ*HGEGAG
Trigger: ACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCC...GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR TCA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAATATGGGGAACTCACTaGCTGCATGTCCTGGAGGCT +
Preference number: 2 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLIWGTH*LHVLEA
Trigger: AGCCTCCAGGACATGCAGTCAGTGAGTTCCCCATAT...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR TCA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGAGGCGCTGTAACAGATaGCAGGCTCTGGCAGGCTCT +
Preference number: 2 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMRRCNR*QALAGS
Trigger: AGAGCCTGCCAGAGCCTGTCATCTGTTACAGCGCCT...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR CAA 90 bp GGCAGGCTCTCTAGGAAAAGCAGCAAGGCTTCGGCTACAGAATGGTaGTTAGCACAGAGCTGGTCGATCATCCCAGTATCTAGACAGTCC +
Preference number: 2 (lower is better)
Translates to: GRLSRKSSKASATEW*LAQSWSIIPVSRQS
Trigger: GGACTGTCTAGATACTGGGATGATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTTCCTAGAGAGCCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp ATCCTACAAAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGTGTGCTAGCCAATaGCATGGAGAAGGGGCAGGT +
Preference number: 2 (lower is better)
Translates to: ILQNPTCFTRTPFLQCSWGCASQ*HGEGAG
Trigger: ACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCC...CCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTTTGTAGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp ATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCTCATCCAGAGCTCTTTaGGGATTTCCATGGGGTTCT +
Preference number: 2 (lower is better)
Translates to: MRCSVRDMGNSLTACPGGSSRAL*GFPWGS
Trigger: AGAACCCCATGGAAATCCCCAAAGAGCTCTGGATGA...GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGCTCTGGCCTCAGACCTaGCTGCTGAAACAGATCTTC +
Preference number: 2 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMLWPQT*LLKQIF
Trigger: GAAGATCTGTTTCAGCAGCCAGGTCTGAGGCCAGAG...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp AAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTGGTCGATCTATATGGTCAAACTCTaGCCTCAGACCTGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: KSSKASATEWLLAQSWSIYMVKL*PQTWLL
Trigger: CAGCAGCCAGGTCTGAGGCCAGAGTTTGACCATATA...GATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR GCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGTACATATATGAGAGGTaGTGCATTATATACAGTTGG +
Preference number: 2 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGYIYER*CIIYSW
Trigger: CCAACTGTATATAATGCAGCACCTCTCATATATGTA...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR GCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTGCTTGCTGCGTAATTaGCAGAACACTCCAAGCAGC +
Preference number: 2 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMCLLRN*QNTPSS
Trigger: GCTGCTTGGAGTGTTCTGGCAATTACGCAGCAAGCA...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGGGTAGAAGAAACAGGTaGCTGCCATTCTTCCAGCAG +
Preference number: 2 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMGRRNR*LPFFQQ
Trigger: CTGCTGGAAGAATGGCAGCCACCTGTTTCTTCTACC...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGCATTTTTGTGGAAGCTaGGGAGGGTTAAAATTATCT +
Preference number: 2 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMHFCGS*GGLKLS
Trigger: AGATAATTTTAACCCTCCCCAGCTTCCACAAAAATG...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CCA 90 bp TGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAAATTCAGTTCTACTATGGTaGATTGCCCCCATGTCTTCA +
Preference number: 2 (lower is better)
Translates to: CPGGWLNKAKYSYLKLLNSVLLW*IAPMSS
Trigger: TGAAGACATGGGGGCAATCCACCATAGTAGAACTGA...ATTTAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR GCA 90 bp ATGAGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCTACATATATGAGAGGTaGTGCATTATATACAGTTGG +
Preference number: 2 (lower is better)
Translates to: MRGAALYTVGRTEYPTKSYIYER*CIIYSW
Trigger: CCAACTGTATATAATGCAGCACCTCTCATATATGTA...GGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR TCA 72 bp CCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTaGGAGGCCTTGGAGTTGAGCAGAAAGGGAACAGGT +
Preference number: 3 (lower is better)
Translates to: PEPPFFSALGGD*EALELSRKGTG
Trigger: ACCTGTTCCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR CAA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGGAACATGTTTGCGGCTaGGACAGTGGAAGCATCTGG +
Preference number: 3 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGEHVCG*DSGSIW
Trigger: CCAGATGCTTCCACTGTCCAAGCCGCAAACATGTTC...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CCA 72 bp CATGTCTTCACAAGTCAGCATGGGTGTGCTAGCCAATaGCATGGAGAAGGGGCAGGTCTAGGCTCAGGTAGA +
Preference number: 3 (lower is better)
Translates to: HVFTSQHGCASQ*HGEGAGLGSGR
Trigger: TCTACCTGAGCCTAGACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCCATGCTGACTTGTGAAGACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR TCA 72 bp AACACTCCAAGCAGCTATGGTAGGCGCTGTAACAGATaGCAGGCTCTGGCAGGCTCTCTAGGAAAAGCAGCA +
Preference number: 3 (lower is better)
Translates to: NTPSSYGRRCNR*QALAGSLGKAA
Trigger: TGCTGCTTTTCCTAGAGAGCCTGCCAGAGCCTGTCATCTGTTACAGCGCCTACCATAGCTGCTTGGAGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR TCA 72 bp TGGGCCTTCTTCTTTTCCGCCATGTCAAGCTTTTGGTaGCGAGCTGGGTTCCGGAGCAGTAAGCTGCCAAAT +
Preference number: 3 (lower is better)
Translates to: WAFFFSAMSSFW*RAGFRSSKLPN
Trigger: ATTTGGCAGCTTACTGCTCCGGAACCCAGCTCGTCACCAAAAGCTTGACATGGCGGAAAAGAAGAAGGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR GCA 72 bp CTGAGAGGCCTTGGAGTTGAGCAGAAAGGGAACAGGTaGCCTATGCATGAACATGTTTGCGGCTTGGACAGT +
Preference number: 3 (lower is better)
Translates to: LRGLGVEQKGNR*PMHEHVCGLDS
Trigger: ACTGTCCAAGCCGCAAACATGTTCATGCATAGGGCACCTGTTCCCTTTCTGCTCAACTCCAAGGCCTCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CCA 72 bp ACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTaGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAA +
Preference number: 3 (lower is better)
Translates to: TCFTRTPFLQCS*GRLRGLGVEQK
Trigger: TTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR-3UTR CAA 90 bp CTGACCATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTTCGGCTACAGAATGGTaGTTAGCACAGAGCTGGTCG +
Preference number: 3 (lower is better)
Translates to: LTMRCSVRDMGNSLTACPSATEW*LAQSWS
Trigger: CGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGA...AGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCATGGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CAA 90 bp CCAGTATCTAGACAGTCCCTTATATGGTCAAACTCTGGCCTCAGACCTGGCTGCATCATCCAGAGCTCTTaGGGGATTTCCATGGGGTTC +
Preference number: 3 (lower is better)
Translates to: PVSRQSLIWSNSGLRPGCIIQSS*GISMGF
Trigger: GAACCCCATGGAAATCCCCAAAGAGCTCTGGATGAT...GCAGCCAGGTCTGAGGCCAGAGTTTGACCATATAAGGGACTGTCTAGATACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR TCA 72 bp AGTAGTGAGGCTCAGAGTGGACCGCAGAGGAACTGGTaGATAAACTCTTGGGCCTTCTTCTTTTCCGCCATG +
Preference number: 3 (lower is better)
Translates to: SSEAQSGPQRNW*INSWAFFFSAM
Trigger: CATGGCGGAAAAGAAGAAGGCCCAAGAGTTTATTCACCAGTTCCTCTGCGGTCCACTCTGAGCCTCACTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR-3UTR CAA 90 bp GCTTGCTGCGTAATTGCCAGAACACTCCAAGCAGCTATGGTAGGCGCTGTAACATTCTACTATGGTGGATaGCCCCCATGTCTTCACAAG +
Preference number: 3 (lower is better)
Translates to: ACCVIARTLQAAMVGAVTFYYGG*PPCLHK
Trigger: CTTGTGAAGACATGGGGGCAATCCACCATAGTAGAA...TGTTACAGCGCCTACCATAGCTGCTTGGAGTGTTCTGGCAATTACGCAGCAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR CCA 72 bp ACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTaGATTGCCCCCATGTCTTCACAAGTCAGCATGGGT +
Preference number: 3 (lower is better)
Translates to: TRVECGTSVLLW*IAPMSSQVSMG
Trigger: ACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CCA 72 bp AAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTaGTCGATCATCCCAGTATCTAGACAGTCCCTTATA +
Preference number: 3 (lower is better)
Translates to: KASATEWLLAQS*SIIPVSRQSLI
Trigger: TATAAGGGACTGTCTAGATACTGGGATGATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp GGAACCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGGGGCCAGGGCGCTGTaGCTCAGCCAGGGCCGGAGA +
Preference number: 4 (lower is better)
Translates to: GTSKQSPAAPSHSPSGTSGARAL*LSQGRR
Trigger: TCTCCGGCCCTGGCTGAGCCACAGCGCCCTGGCCCC...TGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGGTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGGGGGCCAGGGCGCTGTaGCTCAGCCAGGGCCGGAGA +
Preference number: 4 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQGARAL*LSQGRR
Trigger: TCTCCGGCCCTGGCTGAGCCACAGCGCCCTGGCCCC...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGTCAGCATGGGTGTGCTAGCCAATGGCATGGAGAAGGGGCAGGTCTAGGCTCACGTGCATTCCGAGACTaGTGCCTGCTTCCTCCAATG +
Preference number: 4 (lower is better)
Translates to: SQHGCASQWHGEGAGLGSRAFRD*CLLPPM
Trigger: CATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACG...TGAGCCTAGACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCCATGCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGATGTCAAGCTTTTGGTaGCGAGCTGGGTTCCGGAGC +
Preference number: 4 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGMSSFW*RAGFRS
Trigger: GCTCCGGAACCCAGCTCGTCACCAAAAGCTTGACAT...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CCA 90 bp CTGACCATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTCGGGCCCCTCCCATTTaGCCTCGAGCTGTCCACATT +
Preference number: 4 (lower is better)
Translates to: LTMRCSVRDMGNSLTACPRAPPI*PRAVHI
Trigger: AATGTGGACAGCTCGAGGCCAAATGGGAGGGGCCCG...AGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCATGGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGCTGGTGTTGTGCAGCTaGAACCTGATCGCCACTCCT +
Preference number: 4 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGLVLCS*NLIATP
Trigger: AGGAGTGGCGATCAGGTTCCAGCTGCACAACACCAG...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAAGAGCTGACAGGCTTGTaGTCACTGGTCTTCAAGGCC +
Preference number: 4 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQELTGL*SLVFKA
Trigger: GGCCTTGAAGACCAGTGACCACAAGCCTGTCAGCTC...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGTACCCATCCTTCCCATaGTTCCTGTCCCTACGGTCT +
Preference number: 4 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGYPSFP*FLSLRS
Trigger: AGACCGTAGGGACAGGAATCATGGGAAGGATGGGTA...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGCAGATGCTGGTGTTGTaGAGCTGGAACCTGATCGCC +
Preference number: 4 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQQMLVL*SWNLIA
Trigger: GGCGATCAGGTTCCAGCTGCACAACACCAGCATCTG...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp AAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTGGTCGATCCGGGCCCCTCCCATTTaGCCTCGAGCTGTCCACATT +
Preference number: 4 (lower is better)
Translates to: KSSKASATEWLLAQSWSIRAPPI*PRAVHI
Trigger: AATGTGGACAGCTCGAGGCCAAATGGGAGGGGCCCG...GATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTATGCGCATACAGGGTTTaGAAGGCCTTCTCTTCCACG +
Preference number: 4 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLCAYRV*KAFSST
Trigger: CGTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCA...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGGAGATCCGAAGCAGCTaGGCAGGTAGTTCCCAGACA +
Preference number: 4 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQEIRSS*AGSSQT
Trigger: TGTCTGGGAACTACCTGCCCAGCTGCTTCGGATCTC...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGCTCTGGCCTCAGACCTaGCTGCTGAAACAGATCTTC +
Preference number: 4 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGLWPQT*LLKQIF
Trigger: GAAGATCTGTTTCAGCAGCCAGGTCTGAGGCCAGAG...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR TCA 90 bp AGTCAGCATGGGTGTGCTAGCCAATGGCATGGAGAAGGGGCAGGTCTAGGCTCATGCACGGATAAAATGTaGGCCTTGTCCGATACTGTG +
Preference number: 4 (lower is better)
Translates to: SQHGCASQWHGEGAGLGSCTDKM*ALSDTV
Trigger: CACAGTATCGGACAAGGCTCACATTTTATCCGTGCA...TGAGCCTAGACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCCATGCTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TCTTCTTTTCCGCCATGTCAAGCTTTTGGTGACGAGCTGGGTTCCGGAGCAGTATGTGCAGCTGGAACCTaGTCGCCACTCCTCCTTTGT +
Preference number: 4 (lower is better)
Translates to: SSFPPCQAFGDELGSGAVCAAGT*SPLLLC
Trigger: ACAAAGGAGGAGTGGCGATCAGGTTCCAGCTGCACA...TACTGCTCCGGAACCCAGCTCGTCACCAAAAGCTTGACATGGCGGAAAAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAACTTCTATCCTGTAGTTaGGGTCTCCCAGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQLLSCS*GLPATR
Trigger: TCTTGTGGCTGGGAGACCTCAACTACAGGATAGAAG...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGAGGCGCTGTAACAGATaGCAGGCTCTGGCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVRRCNR*QALAGS
Trigger: AGAGCCTGCCAGAGCCTGTCATCTGTTACAGCGCCT...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR GCA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAATGCTTGCTGCGTAATTaGCAGAACACTCCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQCLLRN*QNTPSS
Trigger: GCTGCTTGGAGTGTTCTGGCAATTACGCAGCAAGCA...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CCA 90 bp AAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTTCAACCAGGGTCTCCTaGATTGCCACAGACTGGTCC +
Preference number: 4 (lower is better)
Translates to: KSHLFHQNPLSSVLLGATSTRVS*IATDWS
Trigger: GGACCAGTCTGTGGCAATCCAGGAGACCCTGGTTGA...AGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp AAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTGGTCGATCAACCTGGACAGGCTCTaGCCACTTCCTGGAGGAACG +
Preference number: 4 (lower is better)
Translates to: KSSKASATEWLLAQSWSINLDRL*PLPGGT
Trigger: CGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTT...GATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGCTCAGGGTCGAAACCTaGACAGGCTCTGGCCACTTC +
Preference number: 4 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVLRVET*TGSGHF
Trigger: GAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGAG...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGCATCAAAGATGGTCCTaGCAGCCACCTGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: TPFLQCSWGRLRGLGVEQHQRWS*QPPGFL
Trigger: TAAAAATCCAGGTGGCTGCCAGGACCATCTTTGATG...CTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAATGCACGGATAAAATGTaGGCCTTGTCCGATACTGTG +
Preference number: 4 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQCTDKM*ALSDTV
Trigger: CACAGTATCGGACAAGGCTCACATTTTATCCGTGCA...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTACTCAGCTTCCACTTCTaGGATATAGGCTGCATGTTC +
Preference number: 4 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLLSFHF*DIGCMF
Trigger: GAACATGCAGCCTATATCTCAGAAGTGGAAGCTGAG...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp ATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCCTTCTATCCTGTAGTTaGGGTCTCCCAGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: MRCSVRDMGNSLTACPGGLLSCS*GLPATR
Trigger: TCTTGTGGCTGGGAGACCTCAACTACAGGATAGAAG...GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTTGTCAAACACTGAGCTaGCAGGCTTGTGGTCACTGG +
Preference number: 4 (lower is better)
Translates to: KSHLFHQNPLSSVLLGATCQTLS*QACGHW
Trigger: CCAGTGACCACAAGCCTGTCAGCTCAGTGTTTGACA...AGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTCCCAATGTCAAACACTaGGCTGACAGGCTTGTGGTC +
Preference number: 4 (lower is better)
Translates to: KSHLFHQNPLSSVLLGATPNVKH*ADRLVV
Trigger: GACCACAAGCCTGTCAGCTCAGTGTTTGACATTGGG...AGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp ATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCTACAGGAAGAGAGCATaGTCCTGGGCGTCATTTTCC +
Preference number: 4 (lower is better)
Translates to: MRCSVRDMGNSLTACPGGYRKRA*SWASFS
Trigger: GGAAAATGACGCCCAGGAGCATGCTCTCTTCCTGTA...GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGTACAGGAAGAGAGCATaGTCCTGGGCGTCATTTTCC +
Preference number: 4 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQYRKRA*SWASFS
Trigger: GGAAAATGACGCCCAGGAGCATGCTCTCTTCCTGTA...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp GGAACCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTGAAGGACTCGGTTTaGAACTGCATGTACTTCACA +
Preference number: 4 (lower is better)
Translates to: GTSKQSPAAPSHSPSGTSVKDSV*NCMYFT
Trigger: TGTGAAGTACATGCAGTTGCAAACCGAGTCCTTCAC...TGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp AGTCAGCATGGGTGTGCTAGCCAATGGCATGGAGAAGGGGCAGGTCTAGGCTCAAGTTCAATCTCAACATaGGAATCTGGCAGGAGGAAG +
Preference number: 4 (lower is better)
Translates to: SQHGCASQWHGEGAGLGSSSIST*ESGRRK
Trigger: CTTCCTCCTGCCAGATTCGCATGTTGAGATTGAACT...TGAGCCTAGACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCCATGCTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGGAGAGTGGCACTATCTaGTCCAGAGATACATCGTCT +
Preference number: 4 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGESGTI*SRDTSS
Trigger: AGACGATGTATCTCTGGACCAGATAGTGCCACTCTC...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp GGCTTGGACAGTGGAAGCATCTGGATGGCTAAAAGTTGTTTATCCAGGAACCTCAACCTGGACAGGCTCTaGCCACTTCCTGGAGGAACG +
Preference number: 4 (lower is better)
Translates to: GLDSGSIWMAKSCLSRNLNLDRL*PLPGGT
Trigger: CGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTT...GAGGTTCCTGGATAAACAACTTTTAGCCATCCAGATGCTTCCACTGTCCAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGCACGACACTTCTCACTaGTGTCCCAGTCGTCAGAGC +
Preference number: 4 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVHDTSH*CPSRQS
Trigger: GCTCTGACGACTGGGACACCAGTGAGAAGTGTCGTG...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTATCCTTTGGGGTATCGTaGAAGAAGAAGGCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLSFGVS*KKKASL
Trigger: TAAGGAAGCCTTCTTCTTTCACGATACCCCAAAGGA...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTCCTTTGGGGTATCGTaGAAGAAGAAGGCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: LFHQNPLSSVLLGATERPSFGVS*KKKASL
Trigger: TAAGGAAGCCTTCTTCTTTCACGATACCCCAAAGGA...AGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTGGTCGATCTGTCAAACACTGAGCTaGCAGGCTTGTGGTCACTGG +
Preference number: 4 (lower is better)
Translates to: KSSKASATEWLLAQSWSICQTLS*QACGHW
Trigger: CCAGTGACCACAAGCCTGTCAGCTCAGTGTTTGACA...GATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGTCAGCATGGGTGTGCTAGCCAATGGCATGGAGAAGGGGCAGGTCTAGGCTCAACGCCATCAAGTAGTTaGAGACATTTTTGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: SQHGCASQWHGEGAGLGSTPSSS*RHFCGS
Trigger: GCTTCCACAAAAATGTCTTCAACTACTTGATGGCGT...TGAGCCTAGACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCCATGCTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR GCA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAATTTTTAGCTGGTCGTaGGCATACAGGGTTTGGAAG +
Preference number: 4 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLIFSWS*AYRVWK
Trigger: CTTCCAAACCCTGTATGCGCACGACCAGCTAAAAAT...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTGAAGGACTCGGTTTaGAACTGCATGTACTTCACA +
Preference number: 4 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLVKDSV*NCMYFT
Trigger: TGTGAAGTACATGCAGTTGCAAACCGAGTCCTTCAC...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TCTGCTTGCTTGCTGCGTAATTGCCAGAACACTCCAAGCAGCTATGGTAGGCGCGTAGAGTTCACCATCTaGGGACACTTCTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: SACLLRNCQNTPSSYGRRVEFTI*GHFFQH
Trigger: ATGCTGGAAGAAGTGTCCCCAGATGGTGAACTCTAC...GCGCCTACCATAGCTGCTTGGAGTGTTCTGGCAATTACGCAGCAAGCAAGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp ATCCTACAAAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGATACATCGTCTCCTGTaGTGGCCATCCTCCGGTGTG +
Preference number: 4 (lower is better)
Translates to: ILQNPTCFTRTPFLQCSWIHRLL*WPSSGV
Trigger: CACACCGGAGGATGGCCATCACAGGAGACGATGTAT...CCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTTTGTAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp CCAGTATCTAGACAGTCCCTTATATGGTCAAACTCTGGCCTCAGACCTGGCTGCCTCAGCTTCCACTTCTaGGATATAGGCTGCATGTTC +
Preference number: 4 (lower is better)
Translates to: PVSRQSLIWSNSGLRPGCLSFHF*DIGCMF
Trigger: GAACATGCAGCCTATATCTCAGAAGTGGAAGCTGAG...GCAGCCAGGTCTGAGGCCAGAGTTTGACCATATAAGGGACTGTCTAGATACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp GGCTTGGACAGTGGAAGCATCTGGATGGCTAAAAGTTGTTTATCCAGGAACCTCCCCAATGTCAAACACTaGGCTGACAGGCTTGTGGTC +
Preference number: 4 (lower is better)
Translates to: GLDSGSIWMAKSCLSRNLPNVKH*ADRLVV
Trigger: GACCACAAGCCTGTCAGCTCAGTGTTTGACATTGGG...GAGGTTCCTGGATAAACAACTTTTAGCCATCCAGATGCTTCCACTGTCCAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp GGAACCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCATTGATGAATTCAAACTaGCAGGGCACTTGGCTATTA +
Preference number: 4 (lower is better)
Translates to: GTSKQSPAAPSHSPSGTSLMNSN*QGTWLL
Trigger: TAATAGCCAAGTGCCCTGTCAGTTTGAATTCATCAA...TGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGGTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGGTCACACCAGGCCGGTaGACGACACTTCTCACTGGT +
Preference number: 4 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMVTPGR*TTLLTG
Trigger: ACCAGTGAGAAGTGTCGTGCACCGGCCTGGTGTGAC...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TCTGGCAGGCTCTCTAGGAAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTACCTGGAGGAACGTTCTaGTGTGTGAACCAAAGGGAA +
Preference number: 4 (lower is better)
Translates to: SGRLSRKSSKASATEWLLPGGTF*CVNQRE
Trigger: TTCCCTTTGGTTCACACACCAGAACGTTCCTCCAGG...TAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTTCCTAGAGAGCCTGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCCATCAAAGATGGTCCTaGCAGCCACCTGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: MRCSVRDMGNSLTACPGGHQRWS*QPPGFL
Trigger: TAAAAATCCAGGTGGCTGCCAGGACCATCTTTGATG...GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ATCCTACAAAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGAGATCCGAAGCAGCTaGGCAGGTAGTTCCCAGACA +
Preference number: 4 (lower is better)
Translates to: ILQNPTCFTRTPFLQCSWEIRSS*AGSSQT
Trigger: TGTCTGGGAACTACCTGCCCAGCTGCTTCGGATCTC...CCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTTTGTAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGCATTTTTGTGGAAGCTaGGGAGGGTTAAAATTATCT +
Preference number: 4 (lower is better)
Translates to: TPFLQCSWGRLRGLGVEQHFCGS*GGLKLS
Trigger: AGATAATTTTAACCCTCCCCAGCTTCCACAAAAATG...CTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
3UTR CAA 72 bp GAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATaGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGC +
Preference number: 4 (lower is better)
Translates to: ELNVERQFYYGG*PPCLHKSAWVC
Trigger: GCACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CAA 72 bp GGGAACAGGTGCCCTATGCATGAACATGTTTGCGGCTaGGACAGTGGAAGCATCTGGATGGCTAAAAGTTGT +
Preference number: 4 (lower is better)
Translates to: GNRCPMHEHVCG*DSGSIWMAKSC
Trigger: ACAACTTTTAGCCATCCAGATGCTTCCACTGTCCAAGCCGCAAACATGTTCATGCATAGGGCACCTGTTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTGTGCAGCTGGAACCTaGTCGCCACTCCTCCTTTGT +
Preference number: 4 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMCAAGT*SPLLLC
Trigger: ACAAAGGAGGAGTGGCGATCAGGTTCCAGCTGCACA...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTGGAGTTGAGCAGAAAGGGTTGATGAATTCAAACTaGCAGGGCACTTGGCTATTA +
Preference number: 4 (lower is better)
Translates to: FLQCSWGRLRGLGVEQKGLMNSN*QGTWLL
Trigger: TAATAGCCAAGTGCCCTGTCAGTTTGAATTCATCAA...CCCTTTCTGCTCAACTCCAAGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGGTAGAGTTCACCATCTaGGGACACTTCTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVVEFTI*GHFFQH
Trigger: ATGCTGGAAGAAGTGTCCCCAGATGGTGAACTCTAC...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAAGAACCAAAGGGAAGTTaGAATACAAGCTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQEPKGS*NTSLSS
Trigger: TGAACTCAAGCTTGTATTCCAACTTCCCTTTGGTTC...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGCTGGTGTTGTGCAGCTaGAACCTGATCGCCACTCCT +
Preference number: 4 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMLVLCS*NLIATP
Trigger: AGGAGTGGCGATCAGGTTCCAGCTGCACAACACCAG...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ATCCTACAAAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGTGCGCATACAGGGTTTaGAAGGCCTTCTCTTCCACG +
Preference number: 4 (lower is better)
Translates to: ILQNPTCFTRTPFLQCSWCAYRV*KAFSST
Trigger: CGTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCA...CCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTTTGTAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
3UTR CAA 72 bp TCTAGGAAAAGCAGCAAGGCTTCGGCTACAGAATGGTaGTTAGCACAGAGCTGGTCGATCATCCCAGTATCT +
Preference number: 4 (lower is better)
Translates to: SRKSSKASATEW*LAQSWSIIPVS
Trigger: AGATACTGGGATGATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTTCCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
3UTR CAA 72 bp TCAGAGTGGACCGCAGAGGAACTGGTGAATAAACTCTaGGGCCTTCTTCTTTTCCGCCATGTCAAGCTTTTG +
Preference number: 4 (lower is better)
Translates to: SEWTAEELVNKL*GLLLFRHVKLL
Trigger: CAAAAGCTTGACATGGCGGAAAAGAAGAAGGCCCAAGAGTTTATTCACCAGTTCCTCTGCGGTCCACTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCCACATACATCGTCTCCTGTaGTGGCCATCCTCCGGTGTG +
Preference number: 4 (lower is better)
Translates to: RGAALYTVGRTEYPTKSHIHRLL*WPSSGV
Trigger: CACACCGGAGGATGGCCATCACAGGAGACGATGTAT...GTGGGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGGTTGGAATACAAGCTTaGGTTCAGCTGTGTTCAATT +
Preference number: 4 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQVGIQA*VQLCSI
Trigger: AATTGAACACAGCTGAACTCAAGCTTGTATTCCAAC...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp GCAGTTCTTGAGCTGAAACAGGTGGGGCTGACAATTGTGGCTGCCTTAAGGAAAGGTAACTCAGCTGAGTaGTGTTCTTTCCTTTCCACA +
Preference number: 4 (lower is better)
Translates to: AVLELKQVGLTIVAALRKGNSAE*CSFLST
Trigger: TGTGGAAAGGAAAGAACATCACTCAGCTGAGTTACC...TTTCCTTAAGGCAGCCACAATTGTCAGCCCCACCTGTTTCAGCTCAAGAACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp GCATGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAGTCACACCAGGCCGGTaGACGACACTTCTCACTGGT +
Preference number: 4 (lower is better)
Translates to: ACPGGWLNKAKYSYLKLLVTPGR*TTLLTG
Trigger: ACCAGTGAGAAGTGTCGTGCACCGGCCTGGTGTGAC...TAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGTATCTGCTTGCTTGCTaGGTAATTGCCAGAACACTC +
Preference number: 4 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMYLLAC*VIARTL
Trigger: GAGTGTTCTGGCAATTACGCAGCAAGCAAGCAGATA...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CCA 90 bp GGCTTGGACAGTGGAAGCATCTGGATGGCTAAAAGTTGTTTATCCAGGAACCTCGAGAGTGGCACTATCTaGTCCAGAGATACATCGTCT +
Preference number: 4 (lower is better)
Translates to: GLDSGSIWMAKSCLSRNLESGTI*SRDTSS
Trigger: AGACGATGTATCTCTGGACCAGATAGTGCCACTCTC...GAGGTTCCTGGATAAACAACTTTTAGCCATCCAGATGCTTCCACTGTCCAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTGAGAGGCCTTCACAGAAGGAATGTTaGCGTTTTCCATTTTATCCA +
Preference number: 4 (lower is better)
Translates to: LFHQNPLSSVLLGATERPSQKEC*RFPFYP
Trigger: TGGATAAAATGGAAAACGCCAACATTCCTTCTGTGA...AGGCCTCTCAGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp GAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCTGTCACAGAAGGAATGTTaGCGTTTTCCATTTTATCCA +
Preference number: 4 (lower is better)
Translates to: EMLSTGYGELTDCMSWRLSQKEC*RFPFYP
Trigger: TGGATAAAATGGAAAACGCCAACATTCCTTCTGTGA...CAGCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTAACAGAACTCCCGCTTaGAGAGGGTCACAGAAGGAA +
Preference number: 4 (lower is better)
Translates to: TRVECGTSVLLWWIAPMSNRTPA*RGSQKE
Trigger: TTCCTTCTGTGACCCTCTCCAAGCGGGAGTTCTGTT...AGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp GCAGTTCTTGAGCTGAAACAGGTGGGGCTGACAATTGTGGCTGCCTTAAGGAAACAGCATAAAATCTTTTaGGAGTGGCACTATCTGGTC +
Preference number: 4 (lower is better)
Translates to: AVLELKQVGLTIVAALRKQHKIF*EWHYLV
Trigger: GACCAGATAGTGCCACTCTCAAAAGATTTTATGCTG...TTTCCTTAAGGCAGCCACAATTGTCAGCCCCACCTGTTTCAGCTCAAGAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCCACTACCCATCCTTCCCATaGTTCCTGTCCCTACGGTCT +
Preference number: 4 (lower is better)
Translates to: RGAALYTVGRTEYPTKSHYPSFP*FLSLRS
Trigger: AGACCGTAGGGACAGGAATCATGGGAAGGATGGGTA...GTGGGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp AGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCCACCCGCAGAGGAACTGGTaGATAAACTCTTGGGCCTTC +
Preference number: 4 (lower is better)
Translates to: RGAALYTVGRTEYPTKSHPQRNW*INSWAF
Trigger: GAAGGCCCAAGAGTTTATTCACCAGTTCCTCTGCGG...GTGGGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR GCA 90 bp ATGAGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCCAGATGCTGGTGTTGTaGAGCTGGAACCTGATCGCC +
Preference number: 4 (lower is better)
Translates to: MRGAALYTVGRTEYPTKSQMLVL*SWNLIA
Trigger: GGCGATCAGGTTCCAGCTGCACAACACCAGCATCTG...GGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp GCATGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTACACGACACTTCTCACTaGTGTCCCAGTCGTCAGAGC +
Preference number: 4 (lower is better)
Translates to: ACPGGWLNKAKYSYLKLLHDTSH*CPSRQS
Trigger: GCTCTGACGACTGGGACACCAGTGAGAAGTGTCGTG...TAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp ACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCATCCAGAGCTCTTTaGGGATTTCCATGGGGTTCT +
Preference number: 4 (lower is better)
Translates to: TRVECGTSVLLWWIAPMSSSRAL*GFPWGS
Trigger: AGAACCCCATGGAAATCCCCAAAGAGCTCTGGATGA...AGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTATATGGTCAAACTCTaGCCTCAGACCTGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMYMVKL*PQTWLL
Trigger: CAGCAGCCAGGTCTGAGGCCAGAGTTTGACCATATA...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
3UTR CAA 72 bp TGTGGAAGCTGGGGAGGGTTAAAATTATCTGCTTGCTaGCTGCGTAATTGCCAGAACACTCCAAGCAGCTAT +
Preference number: 4 (lower is better)
Translates to: CGSWGGLKLSAC*LRNCQNTPSSY
Trigger: ATAGCTGCTTGGAGTGTTCTGGCAATTACGCAGCAAGCAAGCAGATAATTTTAACCCTCCCCAGCTTCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp ACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTGGTAACTCAGCTGAGTaGTGTTCTTTCCTTTCCACA +
Preference number: 4 (lower is better)
Translates to: TRVECGTSVLLWWIAPMSGNSAE*CSFLST
Trigger: TGTGGAAAGGAAAGAACATCACTCAGCTGAGTTACC...AGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp TGCGGCTTGGACAGTGGAAGCATCTGGATGGCTAAAAGTTGTTTATCCAGGAACCACAAGATCACATCATaGTTGTTAATGGTGAGAGGG +
Preference number: 4 (lower is better)
Translates to: CGLDSGSIWMAKSCLSRNHKITS*LLMVRG
Trigger: CCCTCTCACCATTAACAAGCATGATGTGATCTTGTG...GTTCCTGGATAAACAACTTTTAGCCATCCAGATGCTTCCACTGTCCAAGCCGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGGAACCAAAGGGAAGTTaGAATACAAGCTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVEPKGS*NTSLSS
Trigger: TGAACTCAAGCTTGTATTCCAACTTCCCTTTGGTTC...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAAATCTCAGGGTCGAAACCTaGACAGGCTCTGGCCACTTC +
Preference number: 4 (lower is better)
Translates to: CPGGWLNKAKYSYLKLLNLRVET*TGSGHF
Trigger: GAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGAG...ATTTAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp TGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAAATCGTGCATTCCGAGACTaGTGCCTGCTTCCTCCAATG +
Preference number: 4 (lower is better)
Translates to: CPGGWLNKAKYSYLKLLNRAFRD*CLLPPM
Trigger: CATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACG...ATTTAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGAGTTCAATCTCAACATaGGAATCTGGCAGGAGGAAG +
Preference number: 4 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMSSIST*ESGRRK
Trigger: CTTCCTCCTGCCAGATTCGCATGTTGAGATTGAACT...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAAATGAGCTGACAGGCTTGTaGTCACTGGTCTTCAAGGCC +
Preference number: 4 (lower is better)
Translates to: CPGGWLNKAKYSYLKLLNELTGL*SLVFKA
Trigger: GGCCTTGAAGACCAGTGACCACAAGCCTGTCAGCTC...ATTTAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp GCATGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAAACAGAACTCCCGCTTaGAGAGGGTCACAGAAGGAA +
Preference number: 4 (lower is better)
Translates to: ACPGGWLNKAKYSYLKLLNRTPA*RGSQKE
Trigger: TTCCTTCTGTGACCCTCTCCAAGCGGGAGTTCTGTT...TAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR TCA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGCAGCATAAAATCTTTTaGGAGTGGCACTATCTGGTC +
Preference number: 4 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMQHKIF*EWHYLV
Trigger: GACCAGATAGTGCCACTCTCAAAAGATTTTATGCTG...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR GCA 90 bp AGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCCACATTTTTAGCTGGTCGTaGGCATACAGGGTTTGGAAG +
Preference number: 4 (lower is better)
Translates to: RGAALYTVGRTEYPTKSHIFSWS*AYRVWK
Trigger: CTTCCAAACCCTGTATGCGCACGACCAGCTAAAAAT...GTGGGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CCA 90 bp TGTCCTGGAGGCTGGCTGAATAAGGCAAAGTACAGTTACTTAAAACTTTTAAATCCTGGAGGAACGTTCTaGTGTGTGAACCAAAGGGAA +
Preference number: 4 (lower is better)
Translates to: CPGGWLNKAKYSYLKLLNPGGTF*CVNQRE
Trigger: TTCCCTTTGGTTCACACACCAGAACGTTCCTCCAGG...ATTTAAAAGTTTTAAGTAACTGTACTTTGCCTTATTCAGCCAGCCTCCAGGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp ACAGTCGCGCTCCCGAGAGCCGCCGCCTGCCGACATTTCCCAGTCTaGTTCCTCAAGCGCTTCATCCCGCCGCCCGGCGAGCGGTCTCCG +
Preference number: 5 (lower is better)
Translates to: TVALPRAAACRHFPV*FLKRFIPPPGERSP
Trigger: CGGAGACCGCTCGCCGGGCGGCGGGATGAAGCGCTTGAGGAAGCAGACTGGGAAATGTCGGCAGGCGGCGGCTCTCGGGAGCGCGACTGT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp CGGGCCCCTCCCATTTGGCCTCGAGCTGTCCACATTAGAAACGCCTaGACAGTCGCGCTCCCGAGAGCCGCCGCCTGCCGACATTTCCCA +
Preference number: 5 (lower is better)
Translates to: RAPPIWPRAVHIRNA*TVALPRAAACRHFP
Trigger: TGGGAAATGTCGGCAGGCGGCGGCTCTCGGGAGCGCGACTGTGCAGGCGTTTCTAATGTGGACAGCTCGAGGCCAAATGGGAGGGGCCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp GCAAGACATCCTCCAATCCTCGCCGTGCATTCCGAGACTGATGCCTaGTTCCTCCAATGGGCGCGAACCCACTCCGGGTACCCGGGTCCG +
Preference number: 5 (lower is better)
Translates to: ARHPPILAVHSETDA*FLQWARTHSGYPGP
Trigger: CGGACCCGGGTACCCGGAGTGGGTTCGCGCCCATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACGGCGAGGATTGGAGGATGTCTTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp CACATTAGAAACGCCTGCACAGTCGCGCTCCCGAGAGCCGCCGCCTaGCGACATTTCCCAGTCTGCTTCCTCAAGCGCTTCATCCCGCCG +
Preference number: 5 (lower is better)
Translates to: HIRNACTVALPRAAA*RHFPVCFLKRFIPP
Trigger: CGGCGGGATGAAGCGCTTGAGGAAGCAGACTGGGAAATGTCGGCAGGCGGCGGCTCTCGGGAGCGCGACTGTGCAGGCGTTTCTAATGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp GCGTCATTTTCCAGCCGGTACCTCACCAGCCCGAGCAGGCGGCTCTaGCGGCTATCTCCCTTACACAGCACACCTTGGACTGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: ASFSSRYLTSPSRRL*RLSPLHSTPWTACC
Trigger: GCAGCAGGCAGTCCAAGGTGTGCTGTGTAAGGGAGATAGCCGGCAGAGCCGCCTGCTCGGGCTGGTGAGGTACCGGCTGGAAAATGACGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154229.2
CDS TCA 90 bp CCCCTAGGCAAGACATCCTCCAATCCTCGCCGTGCATTCCGAGACTaGTGCCTGCTTCCTCCAATGGGCGCGAACCCACTCCGGGTACCC +
Preference number: 5 (lower is better)
Translates to: PLGKTSSNPRRAFRD*CLLPPMGANPLRVP
Trigger: GGGTACCCGGAGTGGGTTCGCGCCCATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACGGCGAGGATTGGAGGATGTCTTGCCTAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp GCGTCATTTTCCAGCCGGTACCTCACCAGCCCGAGCAGGCGGCTCTaGCGGCTATCTCCCTTACACAGCACACCTTGGACTGCGATGACG +
Preference number: 5 (lower is better)
Translates to: ASFSSRYLTSPSRRL*RLSPLHSTPWTAMT
Trigger: CGTCATCGCAGTCCAAGGTGTGCTGTGTAAGGGAGATAGCCGGCAGAGCCGCCTGCTCGGGCTGGTGAGGTACCGGCTGGAAAATGACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000184454.8
CDS CCA 90 bp GTGATGGCCATCCTCCGGTGTGTATACAGGAAGAGAGCATGCTCCTaGGCGTCATTTTCCAGCCGGTACCTCACCAGCCCGAGCAGGCGG +
Preference number: 5 (lower is better)
Translates to: VMAILRCVYRKRACS*ASFSSRYLTSPSRR
Trigger: CCGCCTGCTCGGGCTGGTGAGGTACCGGCTGGAAAATGACGCCCAGGAGCATGCTCTCTTCCTGTATACACACCGGAGGATGGCCATCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS GCA 90 bp AATGTAGCCAGGGCCCCTAGGCAAGACATCCTCCAATCCTCGCCGTaGATTCCGAGACTGATGCCTGCTTCCTCCAATGGGCGCGAACCC +
Preference number: 5 (lower is better)
Translates to: NVARAPRQDILQSSP*IPRLMPASSNGREP
Trigger: GGGTTCGCGCCCATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACGGCGAGGATTGGAGGATGTCTTGCCTAGGGGCCCTGGCTACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAACCGGGCCCCTCCCATTaGGCCTCGAGCTGTCCACAT +
Preference number: 5 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQPGPSH*ASSCPH
Trigger: ATGTGGACAGCTCGAGGCCAAATGGGAGGGGCCCGG...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp TCTCCTGTGATGGCCATCCTCCGGTGTGTATACAGGAAGAGAGCATaGTCCTGGGCGTCATTTTCCAGCCGGTACCTCACCAGCCCGAGC +
Preference number: 5 (lower is better)
Translates to: SPVMAILRCVYRKRA*SWASFSSRYLTSPS
Trigger: GCTCGGGCTGGTGAGGTACCGGCTGGAAAATGACGCCCAGGAGCATGCTCTCTTCCTGTATACACACCGGAGGATGGCCATCACAGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS CCA 90 bp CGAACTCGGGATCCCGCGTCTCAGGGTCGAAACCTGGACAGGCTCTaGCCACTTCCTGGAGGAACGTTCTGGTGTGTGAACCAAAGGGAA +
Preference number: 5 (lower is better)
Translates to: RTRDPASQGRNLDRL*PLPGGTFWCVNQRE
Trigger: TTCCCTTTGGTTCACACACCAGAACGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGAGACGCGGGATCCCGAGTTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGCCGGGCCCCTCCCATTaGGCCTCGAGCTGTCCACAT +
Preference number: 5 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQPGPSH*ASSCPH
Trigger: ATGTGGACAGCTCGAGGCCAAATGGGAGGGGCCCGG...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGCAGGAGGAAGCCCTaGCTGGGTCTGGCCGTCAGC +
Preference number: 5 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMGRRKP*LGLAVS
Trigger: GCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCC...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 90 bp TCCCGCGTCTCAGGGTCGAAACCTGGACAGGCTCTGGCCACTTCCTaGAGGAACGTTCTGGTGTGTGAACCAAAGGGAAGTTGGAATACA +
Preference number: 5 (lower is better)
Translates to: SRVSGSKPGQALATS*RNVLVCEPKGSWNT
Trigger: TGTATTCCAACTTCCCTTTGGTTCACACACCAGAACGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGAGACGCGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS CCA 90 bp CAATCTCAACATGCGAATCTGGCAGGAGGAAGCCCTTGCTGGGTCTaGCCGTCAGCCACTGCTTACAGTAGGACTCTTCGTCAGGCTTGT +
Preference number: 5 (lower is better)
Translates to: QSQHANLAGGSPCWV*PSATAYSRTLRQAC
Trigger: ACAAGCCTGACGAAGAGTCCTACTGTAAGCAGTGGCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCCAGATTCGCATGTTGAGATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 90 bp CCAACCAGTCGGACGAACTTCACCTTTGCGTACTTGGCGTCTGGGTaGAGGCTTTCTGACACGGCCTTAAACCACTCTTCCTCCTTTGGG +
Preference number: 5 (lower is better)
Translates to: PTSRTNFTFAYLASG*RLSDTALNHSSSFG
Trigger: CCCAAAGGAGGAAGAGTGGTTTAAGGCCGTGTCAGAAAGCCTTCACCCAGACGCCAAGTACGCAAAGGTGAAGTTCGTCCGACTGGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp GCTCAAGTTCAATCTCAACATGCGAATCTGGCAGGAGGAAGCCCTTaGTGGGTCTGGCCGTCAGCCACTGCTTACAGTAGGACTCTTCGT +
Preference number: 5 (lower is better)
Translates to: AQVQSQHANLAGGSP*WVWPSATAYSRTLR
Trigger: ACGAAGAGTCCTACTGTAAGCAGTGGCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCCAGATTCGCATGTTGAGATTGAACTTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 90 bp CAAGTTCAATCTCAACATGCGAATCTGGCAGGAGGAAGCCCTTGCTaGGTCTGGCCGTCAGCCACTGCTTACAGTAGGACTCTTCGTCAG +
Preference number: 5 (lower is better)
Translates to: QVQSQHANLAGGSPC*VWPSATAYSRTLRQ
Trigger: CTGACGAAGAGTCCTACTGTAAGCAGTGGCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCCAGATTCGCATGTTGAGATTGAACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCCAAAAACAGAACTCCCGCTaGGAGAGGGTCACAGAAGGA +
Preference number: 5 (lower is better)
Translates to: SRVLPPQAILLQGLQLVQKQNSR*ERVTEG
Trigger: TCCTTCTGTGACCCTCTCCAAGCGGGAGTTCTGTTT...TTGGACTAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGGGCAGGAGGAAGCCCTaGCTGGGTCTGGCCGTCAGC +
Preference number: 5 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMGRRKP*LGLAVS
Trigger: GCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCC...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 90 bp CTGGCAGCCACCTGGATTTTTAGCTGGTCGTGCGCATACAGGGTTTaGAAGGCCTTCTCTTCCACGAGCTTTTTCACCTTTCCCACATCC +
Preference number: 5 (lower is better)
Translates to: LAATWIFSWSCAYRV*KAFSSTSFFTFPTS
Trigger: GGATGTGGGAAAGGTGAAAAAGCTCGTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCACGACCAGCTAAAAATCCAGGTGGCTGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp ATGAGAGGTGCTGCATTATATACAGTTGGGAGGACTGAATATCCTACAAAATCCCCTGGCTCCGGAGGGTaGGTCCGGGCCCCTCCCATT +
Preference number: 5 (lower is better)
Translates to: MRGAALYTVGRTEYPTKSPGSGG*VRAPPI
Trigger: AATGGGAGGGGCCCGGACCAACCCTCCGGAGCCAGG...GGATTTTGTAGGATATTCAGTCCTCCCAACTGTATATAATGCAGCACCTCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AGTCAGCATGGGTGTGCTAGCCAATGGCATGGAGAAGGGGCAGGTCTAGGCTCAACCACTCTTCCTCCTTaGGGGTATCGTGAAAGAAGA +
Preference number: 5 (lower is better)
Translates to: SQHGCASQWHGEGAGLGSTTLPP*GYRERR
Trigger: TCTTCTTTCACGATACCCCAAAGGAGGAAGAGTGGT...TGAGCCTAGACCTGCCCCTTCTCCATGCCATTGGCTAGCACACCCATGCTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGGGGCGACTACGCAGATGCTGGTGTaGTGCAGCTGGAACCTGATC +
Preference number: 5 (lower is better)
Translates to: KSHLFHQNPLSSVLLGATTQMLV*CSWNLI
Trigger: GATCAGGTTCCAGCTGCACAACACCAGCATCTGCGT...AGTCGCCCCCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp GCTTGCTGCGTAATTGCCAGAACACTCCAAGCAGCTATGGTAGGCGCTGTAACAACGCAGATGCTGGTGTaGTGCAGCTGGAACCTGATC +
Preference number: 5 (lower is better)
Translates to: ACCVIARTLQAAMVGAVTTQMLV*CSWNLI
Trigger: GATCAGGTTCCAGCTGCACAACACCAGCATCTGCGT...TGTTACAGCGCCTACCATAGCTGCTTGGAGTGTTCTGGCAATTACGCAGCAAGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp ATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCACTGAGCTGACAGGCTaGTGGTCACTGGTCTTCAAG +
Preference number: 5 (lower is better)
Translates to: MRCSVRDMGNSLTACPGGTELTG*WSLVFK
Trigger: CTTGAAGACCAGTGACCACAAGCCTGTCAGCTCAGT...GCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp GAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCTGATCATCCAGAGCTCTTaGGGGATTTCCATGGGGTTC +
Preference number: 5 (lower is better)
Translates to: EMLSTGYGELTDCMSWRLIIQSS*GISMGF
Trigger: GAACCCCATGGAAATCCCCAAAGAGCTCTGGATGAT...CAGCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS GCA 90 bp CCATCAAAGATGGTCCTGGCAGCCACCTGGATTTTTAGCTGGTCGTaGGCATACAGGGTTTGGAAGGCCTTCTCTTCCACGAGCTTTTTC +
Preference number: 5 (lower is better)
Translates to: PSKMVLAATWIFSWS*AYRVWKAFSSTSFF
Trigger: GAAAAAGCTCGTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCACGACCAGCTAAAAATCCAGGTGGCTGCCAGGACCATCTTTGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 90 bp ACCATCATCCAGAGCTCTTTGGGGATTTCCATGGGGTTCTCCAACTaGCTCCTGTCATCTGCAGTCTGCACTGACATCAACGTCAGGTCA +
Preference number: 5 (lower is better)
Translates to: TIIQSSLGISMGFSN*LLSSAVCTDINVRS
Trigger: TGACCTGACGTTGATGTCAGTGCAGACTGCAGATGACAGGAGCCAGTTGGAGAACCCCATGGAAATCCCCAAAGAGCTCTGGATGATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CAA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGTGCGCATACAGGGTTaGGAAGGCCTTCTCTTCCAC +
Preference number: 5 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMVRIQG*EGLLFH
Trigger: GTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCAC...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 90 bp CTTTTGAGAGTGGCACTATCTGGTCCAGAGATACATCGTCTCCTGTaGTGGCCATCCTCCGGTGTGTATACAGGAAGAGAGCATGCTCCT +
Preference number: 5 (lower is better)
Translates to: LLRVALSGPEIHRLL*WPSSGVYTGREHAP
Trigger: AGGAGCATGCTCTCTTCCTGTATACACACCGGAGGATGGCCATCACAGGAGACGATGTATCTCTGGACCAGATAGTGCCACTCTCAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS TCA 90 bp CTTTCTGACACGGCCTTAAACCACTCTTCCTCCTTTGGGGTATCGTaGAAGAAGAAGGCTTCCTTACTCAGGTCGAGCTCCTGGAACCCT +
Preference number: 5 (lower is better)
Translates to: LSDTALNHSSSFGVS*KKKASLLRSSSWNP
Trigger: AGGGTTCCAGGAGCTCGACCTGAGTAAGGAAGCCTTCTTCTTTCACGATACCCCAAAGGAGGAAGAGTGGTTTAAGGCCGTGTCAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 90 bp GACGAACTTCACCTTTGCGTACTTGGCGTCTGGGTGAAGGCTTTCTaGCACGGCCTTAAACCACTCTTCCTCCTTTGGGGTATCGTGAAA +
Preference number: 5 (lower is better)
Translates to: DELHLCVLGVWVKAF*HGLKPLFLLWGIVK
Trigger: TTTCACGATACCCCAAAGGAGGAAGAGTGGTTTAAGGCCGTGTCAGAAAGCCTTCACCCAGACGCCAAGTACGCAAAGGTGAAGTTCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 90 bp CCACGCTGCCTTTCCCTCTCCCACTGGCAAACGACTTCACCTCTCTaGGTTTTCCTCATAACTGGGAAGGATATGATGACGCAGTATTCC +
Preference number: 5 (lower is better)
Translates to: PRCLSLSHWQTTSPL*VFLITGKDMMTQYS
Trigger: GGAATACTGCGTCATCATATCCTTCCCAGTTATGAGGAAAACTCAGAGAGGTGAAGTCGTTTGCCAGTGGGAGAGGGAAAGGCAGCGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154229.2
CDS-3UTR CAA 90 bp TCTGGCAGGCTCTCTAGGAAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAAAACAGAACTCCCGCTaGGAGAGGGTCACAGAAGGA +
Preference number: 5 (lower is better)
Translates to: SGRLSRKSSKASATEWLLKQNSR*ERVTEG
Trigger: TCCTTCTGTGACCCTCTCCAAGCGGGAGTTCTGTTT...TAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTTCCTAGAGAGCCTGCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp GGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGTCGGCTACAGAATGGTaGTTAGCACAGAGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: GTSVLLWWIAPMSSQVSMSATEW*LAQSWS
Trigger: CGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGA...CATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGACGTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS TCA 90 bp CTCACGATTGTGTCTCGAAGCCCAAACTTCTGCACGGATAAAATGTaGGCCTTGTCCGATACTGTGACTGTGGCGGAGCGAACCTTTTCA +
Preference number: 5 (lower is better)
Translates to: LTIVSRSPNFCTDKM*ALSDTVTVAERTFS
Trigger: TGAAAAGGTTCGCTCCGCCACAGTCACAGTATCGGACAAGGCTCACATTTTATCCGTGCAGAAGTTTGGGCTTCGAGACACAATCGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 90 bp GGGATTTCCATGGGGTTCTCCAACTGGCTCCTGTCATCTGCAGTCTaGACTGACATCAACGTCAGGTCACTAACAGTTTTCAGTGGTAGA +
Preference number: 5 (lower is better)
Translates to: GISMGFSNWLLSSAV*TDINVRSLTVFSGR
Trigger: TCTACCACTGAAAACTGTTAGTGACCTGACGTTGATGTCAGTGCAGACTGCAGATGACAGGAGCCAGTTGGAGAACCCCATGGAAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CAA 90 bp TCTTCTTTTCCGCCATGTCAAGCTTTTGGTGACGAGCTGGGTTCCGGAGCAGTAACCACTCTTCCTCCTTaGGGGTATCGTGAAAGAAGA +
Preference number: 5 (lower is better)
Translates to: SSFPPCQAFGDELGSGAVTTLPP*GYRERR
Trigger: TCTTCTTTCACGATACCCCAAAGGAGGAAGAGTGGT...TACTGCTCCGGAACCCAGCTCGTCACCAAAAGCTTGACATGGCGGAAAAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp CCTCTAAGCAGAGTCCTGCCGCCCCAAGCCATTCTCCTTCAGGGACTTCAGTTAGTCACAGAAGGAATGTaGGCGTTTTCCATTTTATCC +
Preference number: 5 (lower is better)
Translates to: PLSRVLPPQAILLQGLQLVTEGM*AFSILS
Trigger: GGATAAAATGGAAAACGCCAACATTCCTTCTGTGAC...TAACTGAAGTCCCTGAAGGAGAATGGCTTGGGGCGGCAGGACTCTGCTTAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGAATGTCTCTGTAGTCTaGGTTCCTCCTCTCGTACTC +
Preference number: 5 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVNVSVV*VPPLVL
Trigger: GAGTACGAGAGGAGGAACCAAGACTACAGAGACATT...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGGTGCGCATACAGGGTTaGGAAGGCCTTCTCTTCCAC +
Preference number: 5 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMVRIQG*EGLLFH
Trigger: GTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCAC...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp ATCCTACAAAATCCCACTTGTTTCACCAGAACCCCCTTTCTTCAGTGCTCTTGGACTGAGCTGACAGGCTaGTGGTCACTGGTCTTCAAG +
Preference number: 5 (lower is better)
Translates to: ILQNPTCFTRTPFLQCSWTELTG*WSLVFK
Trigger: CTTGAAGACCAGTGACCACAAGCCTGTCAGCTCAGT...CCAAGAGCACTGAAGAAAGGGGGTTCTGGTGAAACAAGTGGGATTTTGTAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AGAAGAAACAGGTGGCTGCCATTCTTCCAGCAGCCTCAGACCAGCTTAAGGCAGGTCACAGAAGGAATGTaGGCGTTTTCCATTTTATCC +
Preference number: 5 (lower is better)
Translates to: RRNRWLPFFQQPQTSLRQVTEGM*AFSILS
Trigger: GGATAAAATGGAAAACGCCAACATTCCTTCTGTGAC...CTGCCTTAAGCTGGTCTGAGGCTGCTGGAAGAATGGCAGCCACCTGTTTCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp TGCGGCTTGGACAGTGGAAGCATCTGGATGGCTAAAAGTTGTTTATCCAGGAACAATGTCTCTGTAGTCTaGGTTCCTCCTCTCGTACTC +
Preference number: 5 (lower is better)
Translates to: CGLDSGSIWMAKSCLSRNNVSVV*VPPLVL
Trigger: GAGTACGAGAGGAGGAACCAAGACTACAGAGACATT...GTTCCTGGATAAACAACTTTTAGCCATCCAGATGCTTCCACTGTCCAAGCCGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp GAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTGGAGGCTGATTTTTCAGCAGTTCTaGCAAAAACGCCATCAAGTA +
Preference number: 5 (lower is better)
Translates to: EMLSTGYGELTDCMSWRLIFQQF*QKRHQV
Trigger: TACTTGATGGCGTTTTTGCAAGAACTGCTGAAAAAT...CAGCCTCCAGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS-3UTR CAA 90 bp CTGACCATGAGATGCTCAGTACGGGATATGGGGAACTCACTGACTGCATGTCCTAGTTGGAATACAAGCTaGAGTTCAGCTGTGTTCAAT +
Preference number: 5 (lower is better)
Translates to: LTMRCSVRDMGNSLTACPSWNTS*SSAVFN
Trigger: ATTGAACACAGCTGAACTCAAGCTTGTATTCCAACT...AGGACATGCAGTCAGTGAGTTCCCCATATCCCGTACTGAGCATCTCATGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp TCAGTTCTACTATGGTGGATTGCCCCCATGTCTTCACAAGTCAGCATGGGTGTGAAACTGACAGGGCACTaGGCTATTATGAATCGTGAA +
Preference number: 5 (lower is better)
Translates to: SVLLWWIAPMSSQVSMGVKLTGH*AIMNRE
Trigger: TTCACGATTCATAATAGCCAAGTGCCCTGTCAGTTT...CACACCCATGCTGACTTGTGAAGACATGGGGGCAATCCACCATAGTAGAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 90 bp GGAACGTTCTGGTGTGTGAACCAAAGGGAAGTTGGAATACAAGCTTaGGTTCAGCTGTGTTCAATTGTACTGTCACATCAGAGCCAAGGA +
Preference number: 5 (lower is better)
Translates to: GTFWCVNQREVGIQA*VQLCSIVLSHQSQG
Trigger: TCCTTGGCTCTGATGTGACAGTACAATTGAACACAGCTGAACTCAAGCTTGTATTCCAACTTCCCTTTGGTTCACACACCAGAACGTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp AAAAGCAGCAAGGCTTCGGCTACAGAATGGTTGTTAGCACAGAGCTGGTCGATCAGTTGGAATACAAGCTaGAGTTCAGCTGTGTTCAAT +
Preference number: 5 (lower is better)
Translates to: KSSKASATEWLLAQSWSISWNTS*SSAVFN
Trigger: ATTGAACACAGCTGAACTCAAGCTTGTATTCCAACT...GATCGACCAGCTCTGTGCTAACAACCATTCTGTAGCCGAAGCCTTGCTGCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184454.8
CDS-3UTR CAA 90 bp ATAACTAGAGTTGAATGTGGAACGTCAGTTCTACTATGGTGGATTGCCCCCATGAAACTGACAGGGCACTaGGCTATTATGAATCGTGAA +
Preference number: 5 (lower is better)
Translates to: ITRVECGTSVLLWWIAPMKLTGH*AIMNRE
Trigger: TTCACGATTCATAATAGCCAAGTGCCCTGTCAGTTT...CATGGGGGCAATCCACCATAGTAGAACTGACGTTCCACATTCAACTCTAGTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 72 bp CTCCCGAGAGCCGCCGCCTGCCGACATTTCCCAGTCTaGTTCCTCAAGCGCTTCATCCCGCCGCCCGGCGAG +
Preference number: 6 (lower is better)
Translates to: LPRAAACRHFPV*FLKRFIPPPGE
Trigger: CTCGCCGGGCGGCGGGATGAAGCGCTTGAGGAAGCAGACTGGGAAATGTCGGCAGGCGGCGGCTCTCGGGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp CGGCGACTCGGCATCGGGCTCCGCGCATGTGTGTCTTaGCAGCCACTCGAACTCGGGATCCCGCGTCTCAGG +
Preference number: 6 (lower is better)
Translates to: RRLGIGLRACVS*QPLELGIPRLR
Trigger: CCTGAGACGCGGGATCCCGAGTTCGAGTGGCTGTCAAGACACACATGCGCGGAGCCCGATGCCGAGTCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS GCA 72 bp AACGCCTGCACAGTCGCGCTCCCGAGAGCCGCCGCCTaGCGACATTTCCCAGTCTGCTTCCTCAAGCGCTTC +
Preference number: 6 (lower is better)
Translates to: NACTVALPRAAA*RHFPVCFLKRF
Trigger: GAAGCGCTTGAGGAAGCAGACTGGGAAATGTCGGCAGGCGGCGGCTCTCGGGAGCGCGACTGTGCAGGCGTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 72 bp TCCAGCCGGTACCTCACCAGCCCGAGCAGGCGGCTCTaGCGGCTATCTCCCTTACACAGCACACCTTGGACT +
Preference number: 6 (lower is better)
Translates to: SSRYLTSPSRRL*RLSPLHSTPWT
Trigger: AGTCCAAGGTGTGCTGTGTAAGGGAGATAGCCGGCAGAGCCGCCTGCTCGGGCTGGTGAGGTACCGGCTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS CCA 72 bp CCTGGCTCCGGAGGGTTGGTCCGGGCCCCTCCCATTTaGCCTCGAGCTGTCCACATTAGAAACGCCTGCACA +
Preference number: 6 (lower is better)
Translates to: PGSGGLVRAPPI*PRAVHIRNACT
Trigger: TGTGCAGGCGTTTCTAATGTGGACAGCTCGAGGCCAAATGGGAGGGGCCCGGACCAACCCTCCGGAGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp CTCGAACTCGGGATCCCGCGTCTCAGGGTCGAAACCTaGACAGGCTCTGGCCACTTCCTGGAGGAACGTTCT +
Preference number: 6 (lower is better)
Translates to: LELGIPRLRVET*TGSGHFLEERS
Trigger: AGAACGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGAGACGCGGGATCCCGAGTTCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS GCA 72 bp AGGGCCCCTAGGCAAGACATCCTCCAATCCTCGCCGTaGATTCCGAGACTGATGCCTGCTTCCTCCAATGGG +
Preference number: 6 (lower is better)
Translates to: RAPRQDILQSSP*IPRLMPASSNG
Trigger: CCCATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACGGCGAGGATTGGAGGATGTCTTGCCTAGGGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp GATCCCGCGTCTCAGGGTCGAAACCTGGACAGGCTCTaGCCACTTCCTGGAGGAACGTTCTGGTGTGTGAAC +
Preference number: 6 (lower is better)
Translates to: DPASQGRNLDRL*PLPGGTFWCVN
Trigger: GTTCACACACCAGAACGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGAGACGCGGGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS CCA 72 bp GGGCGCTGTGGCTCAGCCAGGGCCGGAGACATTCTTTaGGGGACTGTCCGTTCACATTGTAGGTTCCCACAA +
Preference number: 6 (lower is better)
Translates to: GRCGSARAGDIL*GTVRSHCRFPQ
Trigger: TTGTGGGAACCTACAATGTGAACGGACAGTCCCCCAAAGAATGTCTCCGGCCCTGGCTGAGCCACAGCGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp AAGACATCCTCCAATCCTCGCCGTGCATTCCGAGACTaGTGCCTGCTTCCTCCAATGGGCGCGAACCCACTC +
Preference number: 6 (lower is better)
Translates to: KTSSNPRRAFRD*CLLPPMGANPL
Trigger: GAGTGGGTTCGCGCCCATTGGAGGAAGCAGGCATCAGTCTCGGAATGCACGGCGAGGATTGGAGGATGTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp ATCCTCCGGTGTGTATACAGGAAGAGAGCATGCTCCTaGGCGTCATTTTCCAGCCGGTACCTCACCAGCCCG +
Preference number: 6 (lower is better)
Translates to: ILRCVYRKRACS*ASFSSRYLTSP
Trigger: CGGGCTGGTGAGGTACCGGCTGGAAAATGACGCCCAGGAGCATGCTCTCTTCCTGTATACACACCGGAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS GCA 72 bp ATGGCCATCCTCCGGTGTGTATACAGGAAGAGAGCATaGTCCTGGGCGTCATTTTCCAGCCGGTACCTCACC +
Preference number: 6 (lower is better)
Translates to: MAILRCVYRKRA*SWASFSSRYLT
Trigger: GGTGAGGTACCGGCTGGAAAATGACGCCCAGGAGCATGCTCTCTTCCTGTATACACACCGGAGGATGGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS GCA 72 bp CAATCTCAACATGCGAATCTGGCAGGAGGAAGCCCTTaGTGGGTCTGGCCGTCAGCCACTGCTTACAGTAGG +
Preference number: 6 (lower is better)
Translates to: QSQHANLAGGSP*WVWPSATAYSR
Trigger: CCTACTGTAAGCAGTGGCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCCAGATTCGCATGTTGAGATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp TCTCAACATGCGAATCTGGCAGGAGGAAGCCCTTGCTaGGTCTGGCCGTCAGCCACTGCTTACAGTAGGACT +
Preference number: 6 (lower is better)
Translates to: SQHANLAGGSPC*VWPSATAYSRT
Trigger: AGTCCTACTGTAAGCAGTGGCTGACGGCCAGACCCAGCAAGGGCTTCCTCCTGCCAGATTCGCATGTTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 72 bp ATGGTCCTGGCAGCCACCTGGATTTTTAGCTGGTCGTaGGCATACAGGGTTTGGAAGGCCTTCTCTTCCACG +
Preference number: 6 (lower is better)
Translates to: MVLAATWIFSWS*AYRVWKAFSST
Trigger: CGTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCACGACCAGCTAAAAATCCAGGTGGCTGCCAGGACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp TCAGGGTCGAAACCTGGACAGGCTCTGGCCACTTCCTaGAGGAACGTTCTGGTGTGTGAACCAAAGGGAAGT +
Preference number: 6 (lower is better)
Translates to: SGSKPGQALATS*RNVLVCEPKGS
Trigger: ACTTCCCTTTGGTTCACACACCAGAACGTTCCTCCAGGAAGTGGCCAGAGCCTGTCCAGGTTTCGACCCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS TCA 72 bp CACCTTTGCGTACTTGGCGTCTGGGTGAAGGCTTTCTaGCACGGCCTTAAACCACTCTTCCTCCTTTGGGGT +
Preference number: 6 (lower is better)
Translates to: HLCVLGVWVKAF*HGLKPLFLLWG
Trigger: ACCCCAAAGGAGGAAGAGTGGTTTAAGGCCGTGTCAGAAAGCCTTCACCCAGACGCCAAGTACGCAAAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp CGGACGAACTTCACCTTTGCGTACTTGGCGTCTGGGTaGAGGCTTTCTGACACGGCCTTAAACCACTCTTCC +
Preference number: 6 (lower is better)
Translates to: RTNFTFAYLASG*RLSDTALNHSS
Trigger: GGAAGAGTGGTTTAAGGCCGTGTCAGAAAGCCTTCACCCAGACGCCAAGTACGCAAAGGTGAAGTTCGTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp GTGGCACTATCTGGTCCAGAGATACATCGTCTCCTGTaGTGGCCATCCTCCGGTGTGTATACAGGAAGAGAG +
Preference number: 6 (lower is better)
Translates to: VALSGPEIHRLL*WPSSGVYTGRE
Trigger: CTCTCTTCCTGTATACACACCGGAGGATGGCCATCACAGGAGACGATGTATCTCTGGACCAGATAGTGCCAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS TCA 72 bp GTGTCTCGAAGCCCAAACTTCTGCACGGATAAAATGTaGGCCTTGTCCGATACTGTGACTGTGGCGGAGCGA +
Preference number: 6 (lower is better)
Translates to: VSRSPNFCTDKM*ALSDTVTVAER
Trigger: TCGCTCCGCCACAGTCACAGTATCGGACAAGGCTCACATTTTATCCGTGCAGAAGTTTGGGCTTCGAGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp TCAAAGATGGTCCTGGCAGCCACCTGGATTTTTAGCTaGTCGTGCGCATACAGGGTTTGGAAGGCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: SKMVLAATWIFS*SCAYRVWKAFS
Trigger: AGAGAAGGCCTTCCAAACCCTGTATGCGCACGACCAGCTAAAAATCCAGGTGGCTGCCAGGACCATCTTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 90 bp TCCCAGCCACAAGATCACATCATGCTTGTTAATGGTGAGAGGGGGTaGGCTCGGATCCACCTGAGGGAACTGCATTCGAGAACAAATGTC +
Preference number: 6 (lower is better)
Translates to: SQPQDHIMLVNGERG*ARIHLRELHSRTNV
Trigger: GACATTTGTTCTCGAATGCAGTTCCCTCAGGTGGATCCGAGCCAACCCCCTCTCACCATTAACAAGCATGATGTGATCTTGTGGCTGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp ACGGCCTTAAACCACTCTTCCTCCTTTGGGGTATCGTaGAAGAAGAAGGCTTCCTTACTCAGGTCGAGCTCC +
Preference number: 6 (lower is better)
Translates to: TALNHSSSFGVS*KKKASLLRSSS
Trigger: GGAGCTCGACCTGAGTAAGGAAGCCTTCTTCTTTCACGATACCCCAAAGGAGGAAGAGTGGTTTAAGGCCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 72 bp CAAGATCACATCATGCTTGTTAATGGTGAGAGGGGGTaGGCTCGGATCCACCTGAGGGAACTGCATTCGAGA +
Preference number: 6 (lower is better)
Translates to: QDHIMLVNGERG*ARIHLRELHSR
Trigger: TCTCGAATGCAGTTCCCTCAGGTGGATCCGAGCCAACCCCCTCTCACCATTAACAAGCATGATGTGATCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp TCTGCACGGATAAAATGTGAGCCTTGTCCGATACTGTaGCTGTGGCGGAGCGAACCTTTTCAGACATGTCAG +
Preference number: 6 (lower is better)
Translates to: SARIKCEPCPIL*LWRSEPFQTCQ
Trigger: CTGACATGTCTGAAAAGGTTCGCTCCGCCACAGTCACAGTATCGGACAAGGCTCACATTTTATCCGTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS GCA 72 bp ATGGGGTTCTCCAACTGGCTCCTGTCATCTGCAGTCTaGACTGACATCAACGTCAGGTCACTAACAGTTTTC +
Preference number: 6 (lower is better)
Translates to: MGFSNWLLSSAV*TDINVRSLTVF
Trigger: GAAAACTGTTAGTGACCTGACGTTGATGTCAGTGCAGACTGCAGATGACAGGAGCCAGTTGGAGAACCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094782.10
CDS CAA 72 bp CAGAACTCCCGCTTGGAGAGGGTCACAGAAGGAATGTaGGCGTTTTCCATTTTATCCAGGGAGCGGACAATT +
Preference number: 6 (lower is better)
Translates to: QNSRLERVTEGM*AFSILSRERTI
Trigger: AATTGTCCGCTCCCTGGATAAAATGGAAAACGCCAACATTCCTTCTGTGACCCTCTCCAAGCGGGAGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp CTTTCCCTCTCCCACTGGCAAACGACTTCACCTCTCTaGGTTTTCCTCATAACTGGGAAGGATATGATGACG +
Preference number: 6 (lower is better)
Translates to: LSLSHWQTTSPL*VFLITGKDMMT
Trigger: CGTCATCATATCCTTCCCAGTTATGAGGAAAACTCAGAGAGGTGAAGTCGTTTGCCAGTGGGAGAGGGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154229.2
CDS CCA 72 bp AGACTTAGATTTATTCTGTCTTGTGAGAGAGTTTTCTaGTTTCTCCGGACACCTGGCTCCGGAGGGTTGGTC +
Preference number: 6 (lower is better)
Translates to: RLRFILSCERVF*FLRTPGSGGLV
Trigger: GACCAACCCTCCGGAGCCAGGTGTCCGGAGAAACCAGAAAACTCTCTCACAAGACAGAATAAATCTAAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp ACCTGGATTTTTAGCTGGTCGTGCGCATACAGGGTTTaGAAGGCCTTCTCTTCCACGAGCTTTTTCACCTTT +
Preference number: 6 (lower is better)
Translates to: TWIFSWSCAYRV*KAFSSTSFFTF
Trigger: AAAGGTGAAAAAGCTCGTGGAAGAGAAGGCCTTCCAAACCCTGTATGCGCACGACCAGCTAAAAATCCAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp AGAACTCCCGCTTGGAGAGGGTCACAGAAGGAATGTTaGCGTTTTCCATTTTATCCAGGGAGCGGACAATTT +
Preference number: 6 (lower is better)
Translates to: RTPAWRGSQKEC*RFPFYPGSGQF
Trigger: AAATTGTCCGCTCCCTGGATAAAATGGAAAACGCCAACATTCCTTCTGTGACCCTCTCCAAGCGGGAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 90 bp AGGAACGTTCTGGTGTGTGAACCAAAGGGAAGTTGGAATACAAGCTaGAGTTCAGCTGTGTTCAATTGTACTGTCACATCAGAGCCAAGG +
Preference number: 6 (lower is better)
Translates to: RNVLVCEPKGSWNTS*SSAVFNCTVTSEPR
Trigger: CCTTGGCTCTGATGTGACAGTACAATTGAACACAGCTGAACTCAAGCTTGTATTCCAACTTCCCTTTGGTTCACACACCAGAACGTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS CAA 90 bp TGTAGGTATAATTCTCTTCCTTCTGCACGAGGTGTGATCTCACGATaGTGTCTCGAAGCCCAAACTTCTGCACGGATAAAATGTGAGCCT +
Preference number: 6 (lower is better)
Translates to: CRYNSLPSARGVISR*CLEAQTSARIKCEP
Trigger: AGGCTCACATTTTATCCGTGCAGAAGTTTGGGCTTCGAGACACAATCGTGAGATCACACCTCGTGCAGAAGGAAGAGAATTATACCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 90 bp GGACTCTTCGTCAGGCTTGTTGATGAATTCAAACTGACAGGGCACTaGGCTATTATGAATCGTGAAGGACTCGGTTTGCAACTGCATGTA +
Preference number: 6 (lower is better)
Translates to: GLFVRLVDEFKLTGH*AIMNREGLGLQLHV
Trigger: TACATGCAGTTGCAAACCGAGTCCTTCACGATTCATAATAGCCAAGTGCCCTGTCAGTTTGAATTCATCAACAAGCCTGACGAAGAGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp GATGTAGGTATAATTCTCTTCCTTCTGCACGAGGTGTaGTCTCACGATTGTGTCTCGAAGCCCAAACTTCTG +
Preference number: 6 (lower is better)
Translates to: DVGIILFLLHEV*SHDCVSKPKLL
Trigger: CAGAAGTTTGGGCTTCGAGACACAATCGTGAGATCACACCTCGTGCAGAAGGAAGAGAATTATACCTACATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CCA 72 bp TCTTCCAGCATAAAATCTTTTGAGAGTGGCACTATCTaGTCCAGAGATACATCGTCTCCTGTGATGGCCATC +
Preference number: 6 (lower is better)
Translates to: SSSIKSFESGTI*SRDTSSPVMAI
Trigger: GATGGCCATCACAGGAGACGATGTATCTCTGGACCAGATAGTGCCACTCTCAAAAGATTTTATGCTGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS CAA 72 bp AATTCTCTTCCTTCTGCACGAGGTGTGATCTCACGATaGTGTCTCGAAGCCCAAACTTCTGCACGGATAAAA +
Preference number: 6 (lower is better)
Translates to: NSLPSARGVISR*CLEAQTSARIK
Trigger: TTTTATCCGTGCAGAAGTTTGGGCTTCGAGACACAATCGTGAGATCACACCTCGTGCAGAAGGAAGAGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 72 bp GTCAGGCTTGTTGATGAATTCAAACTGACAGGGCACTaGGCTATTATGAATCGTGAAGGACTCGGTTTGCAA +
Preference number: 6 (lower is better)
Translates to: VRLVDEFKLTGH*AIMNREGLGLQ
Trigger: TTGCAAACCGAGTCCTTCACGATTCATAATAGCCAAGTGCCCTGTCAGTTTGAATTCATCAACAAGCCTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS TCA 72 bp TGGTGTGTGAACCAAAGGGAAGTTGGAATACAAGCTTaGGTTCAGCTGTGTTCAATTGTACTGTCACATCAG +
Preference number: 6 (lower is better)
Translates to: WCVNQREVGIQA*VQLCSIVLSHQ
Trigger: CTGATGTGACAGTACAATTGAACACAGCTGAACTCAAGCTTGTATTCCAACTTCCCTTTGGTTCACACACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094782.10
ENSMUST00000153837.8
ENSMUST00000154229.2
ENSMUST00000184454.8
CDS TCA 72 bp ATTCAAACTGACAGGGCACTTGGCTATTATGAATCGTaGAGGACTCGGTTTGCAACTGCATGTACTTCACAT +
Preference number: 6 (lower is better)
Translates to: IQTDRALGYYES*RTRFATACTSH
Trigger: ATGTGAAGTACATGCAGTTGCAAACCGAGTCCTTCACGATTCATAATAGCCAAGTGCCCTGTCAGTTTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 72 bp GGGCACTTGGCTATTATGAATCGTGAAGGACTCGGTTaGCAACTGCATGTACTTCACATTCTCAAAACAGAA +
Preference number: 6 (lower is better)
Translates to: GHLAIMNREGLG*QLHVLHILKTE
Trigger: TTCTGTTTTGAGAATGTGAAGTACATGCAGTTGCAAACCGAGTCCTTCACGATTCATAATAGCCAAGTGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8
CDS CAA 72 bp TCCAAGTGTAAAACCAGAATGTCTTCAATCGTGTCCTaGCCTGAGTTGAGTTTTGTGGCAGTAGACTTATTT +
Preference number: 6 (lower is better)
Translates to: SKCKTRMSSIVS*PELSFVAVDLF
Trigger: AAATAAGTCTACTGCCACAAAACTCAACTCAGGCAAGGACACGATTGAAGACATTCTGGTTTTACACTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094782.10
ENSMUST00000184454.8