Pregenerated sensors for INO80C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047989Ensembl transcript IDs: ENSMUST00000055012.12, ENSMUST00000125169.2, ENSMUST00000141489.2, ENSMUST00000153360.8
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTGGATaGAGTGTGGCCAGCTGCATCACGCACCTGCTGACTCCCCACAGC | + |
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Preference number: 1 (lower is better) Translates to: TVQPYFLSVLCHGRG*SVASCITHLLTPHS Trigger: GCTGTGGGGAGTCAGCAGGTGCGTGATGCAGCTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGGACTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 90 bp | TGTTACAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTaGATGGAGTGTGGCCAGCTGCATCACGCACCTGCTGACTCCCCA | + |
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Preference number: 1 (lower is better) Translates to: CYSPALLLVCFMSWP*MECGQLHHAPADSP Trigger: TGGGGAGTCAGCAGGTGCGTGATGCAGCTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGGACTGTAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 90 bp | TTGAGGTGTTACAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCATaGCCGTGGATGGAGTGTGGCCAGCTGCATCACGCACCTGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: LRCYSPALLLVCFMS*PWMECGQLHHAPAD Trigger: GTCAGCAGGTGCGTGATGCAGCTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGGACTGTAACACCTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR GCA 90 bp | ATGTATGTATGTACTCCCCTGGTGAAGTCAGAAGAGGGTATTGGATaGCCTGGAACTGGCATTAGAGATAGCTGTGCTGGGAACCAAGCC | + |
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Preference number: 1 (lower is better) Translates to: MYVCTPLVKSEEGIG*PGTGIRDSCAGNQA Trigger: GGCTTGGTTCCCAGCACAGCTATCTCTAATGCCAGTTCCAGGGCATCCAATACCCTCTTCTGACTTCACCAGGGGAGTACATACATACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 90 bp | TGTGGTAGAGCCTCTCTGAAGAAAGTGGGTCACTGGAGCAGGCCTTaGGGTGTTACAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCAT | + |
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Preference number: 1 (lower is better) Translates to: CGRASLKKVGHWSRP*GVTVQPYFLSVLCH Trigger: ATGACATAAAACAGACAAGAAGTAAGGCTGGACTGTAACACCTCAAGGCCTGCTCCAGTGACCCACTTTCTTCAGAGAGGCTCTACCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 90 bp | CCTGTGATCTCGTCCCAAGAGGCATGGGTTCAGAAAAATGCTATCTaGTGGGAAATACTTTGGCCCTCTGTACAGTGCCATCAACAGTTA | + |
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Preference number: 1 (lower is better) Translates to: PVISSQEAWVQKNAI*WEILWPSVQCHQQL Trigger: TAACTGTTGATGGCACTGTACAGAGGGCCAAAGTATTTCCCATCAGATAGCATTTTTCTGAACCCATGCCTCTTGGGACGAGATCACAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 90 bp | TCTATATGTATGAGTTTGCCTGCATGTATGTATGTACTCCCCTGGTaGAGTCAGAAGAGGGTATTGGATGCCCTGGAACTGGCATTAGAG | + |
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Preference number: 1 (lower is better) Translates to: SICMSLPACMYVLPW*SQKRVLDALELALE Trigger: CTCTAATGCCAGTTCCAGGGCATCCAATACCCTCTTCTGACTTCACCAGGGGAGTACATACATACATGCAGGCAAACTCATACATATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR GCA 90 bp | AGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTaGTTTAGAGGTCATTTCCACTCCGTCTCCACTTCTGAGGCTCAG | + |
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Preference number: 1 (lower is better) Translates to: RNVCFQETKSQVQSV*FRGHFHSVSTSEAQ Trigger: CTGAGCCTCAGAAGTGGAGACGGAGTGGAAATGACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
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| 3UTR TCA 90 bp | TTAATTCAACTAGGAAGGTTGCACTTGGAGGGGAAGAAAGCAAACTaGAAACTCCTCCTAGTAAAGCCAGACACTCTTTCCAAAGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: LIQLGRLHLEGKKAN*KLLLVKPDTLSKAQ Trigger: CTGGGCTTTGGAAAGAGTGTCTGGCTTTACTAGGAGGAGTTTTCAGTTTGCTTTCTTCCCCTCCAAGTGCAACCTTCCTAGTTGAATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR GCA 90 bp | AGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTaGAGTCAGTCTGCTTTAGAGGTCATTTCCACTCCGTCTCCACTT | + |
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Preference number: 1 (lower is better) Translates to: RLTAEMFVSRKQSHK*SQSALEVISTPSPL Trigger: AAGTGGAGACGGAGTGGAAATGACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 90 bp | AAACTCCTCCTAGTAAAGCCAGACACTCTTTCCAAAGCCCAGAGCTaGCATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACA | + |
|
Preference number: 1 (lower is better) Translates to: KLLLVKPDTLSKAQS*HFQIDSRNVCFQET Trigger: TGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCTGGGCTTTGGAAAGAGTGTCTGGCTTTACTAGGAGGAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTGGATGGAGTGTGGCAAGGAGCCCTTCCTTaGCCCAGCTCTGCAAATTGC | + |
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Preference number: 2 (lower is better) Translates to: QSSLTSCLFYVMAVDGVWQGALP*PSSANC Trigger: GCAATTTGCAGAGCTGGGGCAAGGAAGGGCTCCTTG...CCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGGACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CAA 90 bp | GCTCGCTTGTTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATaGCAGTCTTTGAAAATGGTGGATGAGAGTTCACAACTTGCAAAC | + |
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Preference number: 2 (lower is better) Translates to: ARLLGSRTSQARGPL*QSLKMVDESSQLAN Trigger: GTTTGCAAGTTGTGAACTCTCATCCACCATTTTCAAAGACTGCAATAAAGGCCCACGGGCCTGGCTTGTTCTGGAGCCTAACAAGCGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTGGATGGAGTGTGGCCAGCCCAGCTCTGCAAATTaGATCTCTAACATTCCGGTC | + |
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Preference number: 2 (lower is better) Translates to: PALLLVCFMSWPWMECGQPSSAN*ISNIPV Trigger: GACCGGAATGTTAGAGATGCAATTTGCAGAGCTGGG...CTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGCTGACTCCCCACAGCAGTGGTCATGTATTCCTTCTTATTGGGCATTTGGCGGGAAGAAAGCAAACTaGAAACTCCTCCTAGTAAAG | + |
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Preference number: 2 (lower is better) Translates to: PADSPQQWSCIPSYWAFGGKKAN*KLLLVK Trigger: CTTTACTAGGAGGAGTTTTCAGTTTGCTTTCTTCCC...GCCAAATGCCCAATAAGAAGGAATACATGACCACTGCTGTGGGGAGTCAGCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CAA 90 bp | TTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATTGCAGTCTTaGAAAATGGTGGATGAGAGTTCACAACTTGCAAACAAGATTCAG | + |
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Preference number: 2 (lower is better) Translates to: LGSRTSQARGPLLQS*KMVDESSQLANKIQ Trigger: CTGAATCTTGTTTGCAAGTTGTGAACTCTCATCCACCATTTTCAAAGACTGCAATAAAGGCCCACGGGCCTGGCTTGTTCTGGAGCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCCACTTCATCCTAAAACAAATCCCAGATATCATATCACTCTGTCCATAAATGTGGTAGAGCCTCTCTaGAGAAAGTGGGTCACTGGA | + |
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Preference number: 2 (lower is better) Translates to: LPLHPKTNPRYHITLSINVVEPL*RKWVTG Trigger: TCCAGTGACCCACTTTCTTCAGAGAGGCTCTACCAC...ATTTATGGACAGAGTGATATGATATCTGGGATTTGTTTTAGGATGAAGTGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCCACTTCATCCTAAAACAAATCCCAGATATCATATCACTCTGTCCATAAATATGGGTCAAGTCCTGTaGTCTCGTCCCAAGAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: LPLHPKTNPRYHITLSINMGQVL*SRPKRH Trigger: ATGCCTCTTGGGACGAGATCACAGGACTTGACCCAT...ATTTATGGACAGAGTGATATGATATCTGGGATTTGTTTTAGGATGAAGTGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR GCA 90 bp | CTCCCACTTCATCCTAAAACAAATCCCAGATATCATATCACTCTGTCCATAAATCAAGCCTGGGTCCCCTaGAAAAGCAATGAGTGGTCT | + |
|
Preference number: 2 (lower is better) Translates to: LPLHPKTNPRYHITLSINQAWVP*KSNEWS Trigger: AGACCACTCATTGCTTTTGCAGGGGACCCAGGCTTG...ATTTATGGACAGAGTGATATGATATCTGGGATTTGTTTTAGGATGAAGTGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 72 bp | GTGGATGGAGTGTGGCCAGCTGCATCACGCACCTGCTaGCTCCCCACAGCAGTGGTCATGTATTCCTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: VDGVWPAASRTC*LPTAVVMYSFL Trigger: TAAGAAGGAATACATGACCACTGCTGTGGGGAGTCAGCAGGTGCGTGATGCAGCTGGCCACACTCCATCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 72 bp | CCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTaGATGGAGTGTGGCCAGCTGCATCACGCACCTGCT | + |
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Preference number: 3 (lower is better) Translates to: PALLLVCFMSWP*MECGQLHHAPA Trigger: AGCAGGTGCGTGATGCAGCTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR CAA 90 bp | CCTGCTGACTCCCCACAGCAGTGGTCATGTATTCCTTCTTATTGGGCATTTGGCAGTCAGAAGAGGGTATaGGATGCCCTGGAACTGGCA | + |
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Preference number: 3 (lower is better) Translates to: PADSPQQWSCIPSYWAFGSQKRV*DALELA Trigger: TGCCAGTTCCAGGGCATCCAATACCCTCTTCTGACT...GCCAAATGCCCAATAAGAAGGAATACATGACCACTGCTGTGGGGAGTCAGCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 72 bp | GCCTCTCTGAAGAAAGTGGGTCACTGGAGCAGGCCTTaGGGTGTTACAGTCCAGCCTTACTTCTTGTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: ASLKKVGHWSRP*GVTVQPYFLSV Trigger: AACAGACAAGAAGTAAGGCTGGACTGTAACACCTCAAGGCCTGCTCCAGTGACCCACTTTCTTCAGAGAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 72 bp | TACAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCATaGCCGTGGATGGAGTGTGGCCAGCTGCATCACGCA | + |
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Preference number: 3 (lower is better) Translates to: YSPALLLVCFMS*PWMECGQLHHA Trigger: TGCGTGATGCAGCTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGGACTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR CAA 90 bp | TCGCTTGTTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATTGCAGTCTTTATTCAACTAGGAAGGTaGCACTTGGAGGGGAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: SLVRLQNKPGPWAFIAVFIQLGR*HLEGKK Trigger: TTTCTTCCCCTCCAAGTGCAACCTTCCTAGTTGAAT...AAAGACTGCAATAAAGGCCCACGGGCCTGGCTTGTTCTGGAGCCTAACAAGCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR CAA 90 bp | GAAGGTGGTTGTGTGTGTGGTAGAGCCTCTCTGAAGAAAGTGGGTCACTGGAGCATTCAACTAGGAAGGTaGCACTTGGAGGGGAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: EGGCVCGRASLKKVGHWSIQLGR*HLEGKK Trigger: TTTCTTCCCCTCCAAGTGCAACCTTCCTAGTTGAAT...GCTCCAGTGACCCACTTTCTTCAGAGAGGCTCTACCACACACACAACCACCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 72 bp | CTAGGAAGGTTGCACTTGGAGGGGAAGAAAGCAAACTaGAAACTCCTCCTAGTAAAGCCAGACACTCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: LGRLHLEGKKAN*KLLLVKPDTLS Trigger: GGAAAGAGTGTCTGGCTTTACTAGGAGGAGTTTTCAGTTTGCTTTCTTCCCCTCCAAGTGCAACCTTCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 72 bp | GAACAAGCCAGGCCCGTGGGCCTTTATTGCAGTCTTTaGAAATGGTGGATGAGAGTTCACAACTTGCAAACA | + |
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Preference number: 3 (lower is better) Translates to: EQARPVGLYCSL*KWWMRVHNLQT Trigger: TGTTTGCAAGTTGTGAACTCTCATCCACCATTTTCAAAGACTGCAATAAAGGCCCACGGGCCTGGCTTGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 72 bp | TCGTCCCAAGAGGCATGGGTTCAGAAAAATGCTATCTaGTGGGAAATACTTTGGCCCTCTGTACAGTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: SSQEAWVQKNAI*WEILWPSVQCH Trigger: ATGGCACTGTACAGAGGGCCAAAGTATTTCCCATCAGATAGCATTTTTCTGAACCCATGCCTCTTGGGACGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 72 bp | GACTCCCCACAGCAGTGGTCATGTATTCCTTCTTATTaGGCATTTGGCCACTGCAAGGAAAGTAACTACAGT | + |
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Preference number: 3 (lower is better) Translates to: DSPQQWSCIPSY*AFGHCKESNYS Trigger: ACTGTAGTTACTTTCCTTGCAGTGGCCAAATGCCCAATAAGAAGGAATACATGACCACTGCTGTGGGGAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTGGATGGAGTGTGGCCAGGCTGACATTTTCAGATaGACAGCAGAAATGTTTGTT | + |
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Preference number: 3 (lower is better) Translates to: PALLLVCFMSWPWMECGQADIFR*TAEMFV Trigger: AACAAACATTTCTGCTGTCAATCTGAAAATGTCAGC...CTGGCCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR GCA 72 bp | TGGTCATGTATTCCTTCTTATTGGGCATTTGGCCACTaGAAGGAAAGTAACTACAGTGACAAGGAGCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: WSCIPSYWAFGH*KESNYSDKEPF Trigger: GAAGGGCTCCTTGTCACTGTAGTTACTTTCCTTGCAGTGGCCAAATGCCCAATAAGAAGGAATACATGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR TCA 72 bp | CCGTGGGCCTTTATTGCAGTCTTTGAAAATGGTGGATaGGAGTTCACAACTTGCAAACAAGATTCAGGGACT | + |
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Preference number: 3 (lower is better) Translates to: PWAFIAVFENGG*EFTTCKQDSGT Trigger: AGTCCCTGAATCTTGTTTGCAAGTTGTGAACTCTCATCCACCATTTTCAAAGACTGCAATAAAGGCCCACGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR GCA 72 bp | GCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTaGAGTCAGTCTGCTTTAGAGGTCATTTCCACTCCG | + |
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Preference number: 3 (lower is better) Translates to: AEMFVSRKQSHK*SQSALEVISTP Trigger: CGGAGTGGAAATGACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR-3UTR CAA 90 bp | CTCCCACTTCATCCTAAAACAAATCCCAGATATCATATCACTCTGTCCATAAATGTCCAGCCTTACTTCTaGTCTGTTTTATGTCATGGC | + |
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Preference number: 3 (lower is better) Translates to: LPLHPKTNPRYHITLSINVQPYF*SVLCHG Trigger: GCCATGACATAAAACAGACAAGAAGTAAGGCTGGAC...ATTTATGGACAGAGTGATATGATATCTGGGATTTGTTTTAGGATGAAGTGGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 72 bp | AAGTCTAGGTGGATACATGTTTTAACTTGGGAGACATaGTGTAGTGATCTGAGTGTAAATTTGGAAGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: KSRWIHVLTWET*CSDLSVNLEGG Trigger: ACCACCTTCCAAATTTACACTCAGATCACTACACCATGTCTCCCAAGTTAAAACATGTATCCACCTAGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CCA 72 bp | GCACATTTAAAGTCTAGGTGGATACATGTTTTAACTTaGGAGACATGGTGTAGTGATCTGAGTGTAAATTTG | + |
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Preference number: 3 (lower is better) Translates to: AHLKSRWIHVLT*ETWCSDLSVNL Trigger: CAAATTTACACTCAGATCACTACACCATGTCTCCCAAGTTAAAACATGTATCCACCTAGACTTTAAATGTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR CCA 90 bp | CAGTCCAGCCTTACTTCTTGTCTGTTTTATGTCATGGCCGTGGATGGAGTGTGGAGGGGACAATGCTTGTaGCCTTCCTCAGGGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: QSSLTSCLFYVMAVDGVWRGQCL*PSSGPG Trigger: ACCTGGCCCTGAGGAAGGCCACAAGCATTGTCCCCT...CCACACTCCATCCACGGCCATGACATAAAACAGACAAGAAGTAAGGCTGGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR GCA 90 bp | AGAGGTCATTTCCACTCCGTCTCCACTTCTGAGGCTCAGGGGACAATGCTTGTGCATCCGAAGGCAGCCTaGGAATGTAGGAGAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: RGHFHSVSTSEAQGTMLVHPKAA*ECRRIP Trigger: AGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG...CACAAGCATTGTCCCCTGAGCCTCAGAAGTGGAGACGGAGTGGAAATGACCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
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| CDS-3UTR CCA 90 bp | CCTGCTGACTCCCCACAGCAGTGGTCATGTATTCCTTCTTATTGGGCATTTGGCGTGAGAAGGGCTAGCTaGCCTCTTCTTGCTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PADSPQQWSCIPSYWAFGVRRAS*PLLAVP Trigger: AGGAACAGCAAGAAGAGGCCAGCTAGCCCTTCTCAC...GCCAAATGCCCAATAAGAAGGAATACATGACCACTGCTGTGGGGAGTCAGCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR GCA 90 bp | CTGGTGAAGTCAGAAGAGGGTATTGGATGCCCTGGAACTGGCATTAGAGATAGCAGGTTCTGTTCTTCTTaGCAGCTACAGCGCCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LVKSEEGIGCPGTGIRDSRFCSS*QLQRRH Trigger: ATGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCT...GCTATCTCTAATGCCAGTTCCAGGGCATCCAATACCCTCTTCTGACTTCACCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153360.8 |
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| 3UTR CAA 72 bp | AGCCTCTCTGAAGAAAGTGGGTCACTGGAGCAGGCCTaGAGGTGTTACAGTCCAGCCTTACTTCTTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SLSEESGSLEQA*RCYSPALLLVC Trigger: ACAGACAAGAAGTAAGGCTGGACTGTAACACCTCAAGGCCTGCTCCAGTGACCCACTTTCTTCAGAGAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR CCA 90 bp | GTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAGGTCATAGGGGACAATGCTTGTaGCCTTCCTCAGGGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: VCFQETKSQVQSVCFRGHRGQCL*PSSGPG Trigger: ACCTGGCCCTGAGGAAGGCCACAAGCATTGTCCCCT...ATGACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| 3UTR CAA 72 bp | TTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATaGCAGTCTTTGAAAATGGTGGATGAGAGTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: LGSRTSQARGPL*QSLKMVDESSQ Trigger: TTGTGAACTCTCATCCACCATTTTCAAAGACTGCAATAAAGGCCCACGGGCCTGGCTTGTTCTGGAGCCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR CCA 90 bp | GACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCGTGAGAAGGGCTAGCTaGCCTCTTCTTGCTGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: DSRNVCFQETKSQVQSVCVRRAS*PLLAVP Trigger: AGGAACAGCAAGAAGAGGCCAGCTAGCCCTTCTCAC...GCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR TCA 90 bp | AGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAACTGCTGGCCATGGCTaGGGAGAAAGTGGACACACC | + |
|
Preference number: 4 (lower is better) Translates to: RNVCFQETKSQVQSVCFRTAGHG*GESGHT Trigger: GGTGTGTCCACTTTCTCCTCAGCCATGGCCAGCAGT...TCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS-3UTR CCA 90 bp | ATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAGGTCATCGTTCAGTTGCCATaGCAACGCCCTTTCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: MFVSRKQSHKCSQSALEVIVQLP*QRPFSS Trigger: GCTGCTGAAAGGGCGTTGCCATGGCAACTGAACGAT...GACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | CAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTATCGTTCAGTTGCCATaGCAACGCCCTTTCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QQKCLFPGNKVTSAVSLLIVQLP*QRPFSS Trigger: GCTGCTGAAAGGGCGTTGCCATGGCAACTGAACGAT...AAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | CAACTGAAGTATGATTTAATTCAACTAGGAAGGTTGCACTTGGAGGGGAAGAAAAGGGGACAATGCTTGTaGCCTTCCTCAGGGCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: QLKYDLIQLGRLHLEGKKRGQCL*PSSGPG Trigger: ACCTGGCCCTGAGGAAGGCCACAAGCATTGTCCCCT...TTTCTTCCCCTCCAAGTGCAACCTTCCTAGTTGAATTAAATCATACTTCAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| 3UTR CAA 72 bp | ACTTGGGAGACATGGTGTAGTGATCTGAGTGTAAATTaGGAAGGTGGTTGTGTGTGTGGTAGAGCCTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TWETWCSDLSVN*EGGCVCGRASL Trigger: CAGAGAGGCTCTACCACACACACAACCACCTTCCAAATTTACACTCAGATCACTACACCATGTCTCCCAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR TCA 90 bp | ACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTCAGCGAGGATCTGTTTaGGGTTCTTCCAGGTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TAEMFVSRKQSHKCSQSAQRGSV*GSSRFC Trigger: ACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTG...AGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR GCA 90 bp | GCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAGCCACTGTGCTAACTaGTGGCCATGGCTGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: ADIFRLTAEMFVSRKQSHSHCAN*WPWLRR Trigger: TCTCCTCAGCCATGGCCAGCAGTTAGCACAGTGGCT...GTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS-3UTR GCA 90 bp | ACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTCATCCGAAGGCAGCCTaGGAATGTAGGAGAATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TAEMFVSRKQSHKCSQSAHPKAA*ECRRIP Trigger: AGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG...AGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | AGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGGTGAGAAGGGCTAGCTaGCCTCTTCTTGCTGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RLTAEMFVSRKQSHKCSQVRRAS*PLLAVP Trigger: AGGAACAGCAAGAAGAGGCCAGCTAGCCCTTCTCAC...CTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR TCA 90 bp | TTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTCAGCGAGGATCTGTTTaGGGTTCTTCCAGGTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LTAEMFVSRKQSHKCSQSQRGSV*GSSRFC Trigger: ACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTG...AGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR TCA 90 bp | GCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTACAGCGAGGATCTGTTTaGGGTTCTTCCAGGTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: AEMFVSRKQSHKCSQSALQRGSV*GSSRFC Trigger: ACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTG...TAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR GCA 90 bp | TTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTAGGTTCTGTTCTTCTTaGCAGCTACAGCGCCGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FRLTAEMFVSRKQSHKCSRFCSS*QLQRRH Trigger: ATGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCT...ACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR GCA 90 bp | ACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGGATCGTTCAGTTaGCATGGCAACGCCCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: TAEMFVSRKQSHKCSQSALGSFS*HGNALS Trigger: TGAAAGGGCGTTGCCATGGCAACTGAACGATCCTAA...AGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR GCA 90 bp | AAGCCCAGAGCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACATCCGAAGGCAGCCTaGGAATGTAGGAGAATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KPRADIFRLTAEMFVSRKHPKAA*ECRRIP Trigger: AGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG...TTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCTGGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | AGAGCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTTGGCTGAGGAGAAAGTaGACACACCAGGGGGATAGC | + |
|
Preference number: 4 (lower is better) Translates to: RADIFRLTAEMFVSRKQSWLRRK*THQGDS Trigger: GCTATCCCCCTGGTGTGTCCACTTTCTCCTCAGCCA...ACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS-3UTR CCA 90 bp | AGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAGCTAACTGCTGGCCATaGCTGAGGAGAAAGTGGACA | + |
|
Preference number: 4 (lower is better) Translates to: RNVCFQETKSQVQSVCFRANCWP*LRRKWT Trigger: TGTCCACTTTCTCCTCAGCCATGGCCAGCAGTTAGC...TCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS-3UTR GCA 90 bp | AGAGCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTAGGTTCTGTTCTTCTTaGCAGCTACAGCGCCGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: RADIFRLTAEMFVSRKQSRFCSS*QLQRRH Trigger: ATGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCT...ACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR GCA 90 bp | AAGCCCAGAGCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAATTAGGATCGTTCAGTTaGCATGGCAACGCCCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KPRADIFRLTAEMFVSRKLGSFS*HGNALS Trigger: TGAAAGGGCGTTGCCATGGCAACTGAACGATCCTAA...TTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCTGGGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR GCA 90 bp | GACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGCATCCGAAGGCAGCCTaGGAATGTAGGAGAATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: DIFRLTAEMFVSRKQSHKHPKAA*ECRRIP Trigger: AGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG...CTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | GCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAAGAATACTTCTTAGCTaGCTTGAAGGATGGAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: AEMFVSRKQSHKCSQSALRILLS*LEGWRS Trigger: GCTCCTCCATCCTTCAAGCCAGCTAAGAAGTATTCT...TAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| 3UTR CAA 72 bp | ATGGGTTCAGAAAAATGCTATCTGATGGGAAATACTTaGGCCCTCTGTACAGTGCCATCAACAGTTACAAAG | + |
|
Preference number: 4 (lower is better) Translates to: MGSEKCYLMGNT*ALCTVPSTVTK Trigger: CTTTGTAACTGTTGATGGCACTGTACAGAGGGCCAAAGTATTTCCCATCAGATAGCATTTTTCTGAACCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | AGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAAGAATACTTCTTAGCTaGCTTGAAGGATGGAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: RNVCFQETKSQVQSVCFRRILLS*LEGWRS Trigger: GCTCCTCCATCCTTCAAGCCAGCTAAGAAGTATTCT...TCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR TCA 90 bp | CAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTTGGCAAGAAGGCCTaGAATATCAGAATACTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QIDSRNVCFQETKSQVQSVGKKA*NIRILL Trigger: AAGAAGTATTCTGATATTTCAGGCCTTCTTGCCAAC...TGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR TCA 90 bp | AGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGGTTGGCAAGAAGGCCTaGAATATCAGAATACTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RLTAEMFVSRKQSHKCSQVGKKA*NIRILL Trigger: AAGAAGTATTCTGATATTTCAGGCCTTCTTGCCAAC...CTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CCA 90 bp | ATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGAATACTTCTTAGCTaGCTTGAAGGATGGAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IFRLTAEMFVSRKQSHKCRILLS*LEGWRS Trigger: GCTCCTCCATCCTTCAAGCCAGCTAAGAAGTATTCT...GCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| 3UTR CAA 72 bp | ACACTCTTTCCAAAGCCCAGAGCTGACATTTTCAGATaGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: TLFPKPRADIFR*TAEMFVSRKQS Trigger: ACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCTGGGCTTTGGAAAGAGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR TCA 90 bp | CAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAATCCAGAAGAAGGCCTaGAATATCAGAATACTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QIDSRNVCFQETKSQVQSIQKKA*NIRILL Trigger: AAGAAGTATTCTGATATTTCAGGCCTTCTTCTGGAT...TGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS CCA 90 bp | ACTAGCACCATATCCCCCTCCGCTGCTGTTGTGAGAAGGGCTAGCTaGCCTCTTCTTGCTGTTCCTAGCTACGGCGGGGGTAGAAGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: TSTISPSAAVVRRAS*PLLAVPSYGGGRSG Trigger: GCCACTTCTACCCCCGCCGTAGCTAGGAACAGCAAGAAGAGGCCAGCTAGCCCTTCTCACAACAGCAGCGGAGGGGGATATGGTGCTAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS TCA 90 bp | CGTTCAGTTGCCATGGCAACGCCCTTTCAGCAGCGAGGATCTGTTTaGGGTTCTTCCAGGTTCTGTTCTTCTTGCCAGCTACAGCGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: RSVAMATPFQQRGSV*GSSRFCSSCQLQRR Trigger: GCGGCGCTGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGCAACTGAACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS TCA 90 bp | CATCCGAAGGCAGCCTGCGAATGTAGGAGAATTCCTCAACCGTGCTaGACCGCAGCTTGCTCTGAGGGTCTGTGTAGTTGGCATGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: HPKAACECRRIPQPC*TAACSEGLCSWHAA Trigger: AGCTGCATGCCAACTACACAGACCCTCAGAGCAAGCTGCGGTTCAGCACGGTTGAGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS TCA 90 bp | CATCCGAAGGCAGCCTGCGAATGTAGGAGAATTCCTCAACCGTGCTaGACCGCAGCTTGCTCTGAGGGTCTGTGTAGTTGGCAAGAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: HPKAACECRRIPQPC*TAACSEGLCSWQEG Trigger: GCCTTCTTGCCAACTACACAGACCCTCAGAGCAAGCTGCGGTTCAGCACGGTTGAGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS TCA 90 bp | CATCCGAAGGCAGCCTGCGAATGTAGGAGAATTCCTCAACCGTGCTaGACCGCAGCTTGCTCTGAGGGTCTGTGTAGTTGGCCTGAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: HPKAACECRRIPQPC*TAACSEGLCSWPEQ Trigger: TTGCTCAGGCCAACTACACAGACCCTCAGAGCAAGCTGCGGTTCAGCACGGTTGAGGAATTCTCCTACATTCGCAGGCTGCCTTCGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141489.2 |
||
| CDS-3UTR CAA 90 bp | TCGCTTGTTAGGCTCCAGAACAAGCCAGGCCCGTGGGCCTTTATTGCAGTCTTTCTAGCTGGCCTCTTCTaGCTGTTCCTAGCTACGGCG | + |
|
Preference number: 5 (lower is better) Translates to: SLVRLQNKPGPWAFIAVFLAGLF*LFLATA Trigger: CGCCGTAGCTAGGAACAGCAAGAAGAGGCCAGCTAG...AAAGACTGCAATAAAGGCCCACGGGCCTGGCTTGTTCTGGAGCCTAACAAGCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS CCA 90 bp | TTCTGCCTCTTCACAGGTGAAAGCCACTGTGCTAACTGCTGGCCATaGCTGAGGAGAAAGTGGACACACCAGGGGGATAGCTTCCACATC | + |
|
Preference number: 5 (lower is better) Translates to: FCLFTGESHCANCWP*LRRKWTHQGDSFHI Trigger: GATGTGGAAGCTATCCCCCTGGTGTGTCCACTTTCTCCTCAGCCATGGCCAGCAGTTAGCACAGTGGCTTTCACCTGTGAAGAGGCAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS CCA 90 bp | ACGATGTTCTGCCTCTTCACAGGTGAAAGCCACTGTGCTAACTGCTaGCCATGGCTGAGGAGAAAGTGGACACACCAGGGGGATAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: TMFCLFTGESHCANC*PWLRRKWTHQGDSF Trigger: GAAGCTATCCCCCTGGTGTGTCCACTTTCTCCTCAGCCATGGCCAGCAGTTAGCACAGTGGCTTTCACCTGTGAAGAGGCAGAACATCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS GCA 90 bp | AAAACGATGTTCTGCCTCTTCACAGGTGAAAGCCACTGTGCTAACTaGTGGCCATGGCTGAGGAGAAAGTGGACACACCAGGGGGATAGC | + |
|
Preference number: 5 (lower is better) Translates to: KTMFCLFTGESHCAN*WPWLRRKWTHQGDS Trigger: GCTATCCCCCTGGTGTGTCCACTTTCTCCTCAGCCATGGCCAGCAGTTAGCACAGTGGCTTTCACCTGTGAAGAGGCAGAACATCGTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS-3UTR CAA 90 bp | GTCATTTCCACTCCGTCTCCACTTCTGAGGCTCAGGGGACAATGCTTGTGGCCTTACTTCTTAGCTGGCTaGAAGGATGGAGGAGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: VISTPSPLLRLRGQCLWPYFLAG*KDGGAS Trigger: TGATGCTCCTCCATCCTTCAAGCCAGCTAAGAAGTA...AGGCCACAAGCATTGTCCCCTGAGCCTCAGAAGTGGAGACGGAGTGGAAATGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS-3UTR CAA 90 bp | AGTCAGTCTGCTTTAGAGGTCATTTCCACTCCGTCTCCACTTCTGAGGCTCAGGCCAGAGTGCACAAAGTaGGGATCCTTAAATGGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: SQSALEVISTPSPLLRLRPECTK*GSLNGN Trigger: GTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGG...CCTGAGCCTCAGAAGTGGAGACGGAGTGGAAATGACCTCTAAAGCAGACTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
||
| CDS TCA 90 bp | GAGGACGCCATTTTACTCTCATTCATGGCTTCAATGCTGACACCCTaGGCAAAGCCGGAGGCGGATAGCTTTTTCTTCTTACTAGCACCA | + |
|
Preference number: 5 (lower is better) Translates to: EDAILLSFMASMLTP*AKPEADSFFFLLAP Trigger: TGGTGCTAGTAAGAAGAAAAAGCTATCCGCCTCCGGCTTTGCTCAGGGTGTCAGCATTGAAGCCATGAATGAGAGTAAAATGGCGTCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055012.12 ENSMUST00000153360.8 |
||
| CDS-3UTR CAA 90 bp | ATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAGGTCCTAGCTGGCCTCTTCTaGCTGTTCCTAGCTACGGCG | + |
|
Preference number: 5 (lower is better) Translates to: MFVSRKQSHKCSQSALEVLAGLF*LFLATA Trigger: CGCCGTAGCTAGGAACAGCAAGAAGAGGCCAGCTAG...GACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
||
| CDS-3UTR CAA 90 bp | ACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTCAGGTTCTGTTCTTCTaGCCAGCTACAGCGCCGCCA | + |
|
Preference number: 5 (lower is better) Translates to: TAEMFVSRKQSHKCSQSAQVLFF*PATAPP Trigger: TGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCTG...AGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
||
| CDS TCA 90 bp | TTAACTCCGAGGACGCCATTTTACTCTCATTCATGGCTTCAATGCTaGCACCCTGAGCAAAGCCGGAGGCGGATAGCTTTTTCTTCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: LTPRTPFYSHSWLQC*HPEQSRRRIAFSSY Trigger: GTAAGAAGAAAAAGCTATCCGCCTCCGGCTTTGCTCAGGGTGTCAGCATTGAAGCCATGAATGAGAGTAAAATGGCGTCCTCGGAGTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055012.12 ENSMUST00000153360.8 |
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| CDS CCA 90 bp | TGGAGGAGCATCAATACTAAAGTAGTTAGGATCGTTCAGTTGCCATaGCAACGCCCTTTCAGCAGCGAGGATCTGTTTGAGGTTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: WRSINTKVVRIVQLP*QRPFSSEDLFEVLP Trigger: TGGAAGAACCTCAAACAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGCAACTGAACGATCCTAACTACTTTAGTATTGATGCTCCTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | AAGCCCAGAGCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAGGTTCTGTTCTTCTaGCCAGCTACAGCGCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: KPRADIFRLTAEMFVSRKQVLFF*PATAPP Trigger: TGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCTG...TTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGCTCTGGGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | CAACTGAAGTATGATTTAATTCAACTAGGAAGGTTGCACTTGGAGGGGAAGAAACAGGTTCTGTTCTTCTaGCCAGCTACAGCGCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: QLKYDLIQLGRLHLEGKKQVLFF*PATAPP Trigger: TGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCTG...TTTCTTCCCCTCCAAGTGCAACCTTCCTAGTTGAATTAAATCATACTTCAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | GTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAGGTCATGTTAGGATCGTTCAGTaGCCATGGCAACGCCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: VCFQETKSQVQSVCFRGHVRIVQ*PWQRPF Trigger: GAAAGGGCGTTGCCATGGCAACTGAACGATCCTAAC...ATGACCTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTGTTAGGATCGTTCAGTaGCCATGGCAACGCCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: QQKCLFPGNKVTSAVSLLVRIVQ*PWQRPF Trigger: GAAAGGGCGTTGCCATGGCAACTGAACGATCCTAAC...AAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | CATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCTAGCTGGCCTCTTCTaGCTGTTCCTAGCTACGGCG | + |
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Preference number: 5 (lower is better) Translates to: HFQIDSRNVCFQETKSQVLAGLF*LFLATA Trigger: CGCCGTAGCTAGGAACAGCAAGAAGAGGCCAGCTAG...CACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | TTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCAGCGAGGATCTGTTaGAGGTTCTTCCAGGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LTAEMFVSRKQSHKCSQSAARIC*RFFQVL Trigger: CAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGC...AGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | CAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGCAGCGAGGATCTGTTaGAGGTTCTTCCAGGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: QIDSRNVCFQETKSQVQSAARIC*RFFQVL Trigger: CAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGC...TGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | TTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGTTAGGATCGTTCAGTaGCCATGGCAACGCCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: LTAEMFVSRKQSHKCSQSVRIVQ*PWQRPF Trigger: GAAAGGGCGTTGCCATGGCAACTGAACGATCCTAAC...AGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | GCTGACATTTTCAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACGCAGCGAGGATCTGTTaGAGGTTCTTCCAGGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: ADIFRLTAEMFVSRKQSHAARIC*RFFQVL Trigger: CAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGC...GTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTGAAAATGTCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTACTTCTTAGCTGGCTaGAAGGATGGAGGAGCATCA | + |
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Preference number: 5 (lower is better) Translates to: QQKCLFPGNKVTSAVSLLYFLAG*KDGGAS Trigger: TGATGCTCCTCCATCCTTCAAGCCAGCTAAGAAGTA...AAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | GAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCAGTCTGCTTTAGAGCCAGAGTGCACAAAGTaGGGATCCTTAAATGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: EMFVSRKQSHKCSQSALEPECTK*GSLNGN Trigger: GTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGG...CTCTAAAGCAGACTGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS-3UTR CAA 90 bp | CAGATTGACAGCAGAAATGTTTGTTTCCAGGAAACAAAGTCACAAGTGCAGTCATACTTCTTAGCTGGCTaGAAGGATGGAGGAGCATCA | + |
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Preference number: 5 (lower is better) Translates to: QIDSRNVCFQETKSQVQSYFLAG*KDGGAS Trigger: TGATGCTCCTCCATCCTTCAAGCCAGCTAAGAAGTA...TGACTGCACTTGTGACTTTGTTTCCTGGAAACAAACATTTCTGCTGTCAATCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CCA 72 bp | ATATCCCCCTCCGCTGCTGTTGTGAGAAGGGCTAGCTaGCCTCTTCTTGCTGTTCCTAGCTACGGCGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: ISPSAAVVRRAS*PLLAVPSYGGG Trigger: ACCCCCGCCGTAGCTAGGAACAGCAAGAAGAGGCCAGCTAGCCCTTCTCACAACAGCAGCGGAGGGGGATAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS TCA 72 bp | GCAGCCTGCGAATGTAGGAGAATTCCTCAACCGTGCTaGACCGCAGCTTGCTCTGAGGGTCTGTGTAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: AACECRRIPQPC*TAACSEGLCSW Trigger: CCAACTACACAGACCCTCAGAGCAAGCTGCGGTTCAGCACGGTTGAGGAATTCTCCTACATTCGCAGGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS CCA 72 bp | GCCATGGCCAGAGTGCACAAAGTTGGGATCCTTAAATaGCAACGGCTTGGCAGCTTTTTCCACAGGCCCCGA | + |
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Preference number: 6 (lower is better) Translates to: AMARVHKVGILK*QRLGSFFHRPR Trigger: TCGGGGCCTGTGGAAAAAGCTGCCAAGCCGTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCATGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CCA 72 bp | CACTGTGCTAACTGCTGGCCATGGCTGAGGAGAAAGTaGACACACCAGGGGGATAGCTTCCACATCTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: HCANCWPWLRRK*THQGDSFHICS Trigger: TGAGCAGATGTGGAAGCTATCCCCCTGGTGTGTCCACTTTCTCCTCAGCCATGGCCAGCAGTTAGCACAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
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| CDS CCA 72 bp | TTCACAGGTGAAAGCCACTGTGCTAACTGCTGGCCATaGCTGAGGAGAAAGTGGACACACCAGGGGGATAGC | + |
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Preference number: 6 (lower is better) Translates to: FTGESHCANCWP*LRRKWTHQGDS Trigger: GCTATCCCCCTGGTGTGTCCACTTTCTCCTCAGCCATGGCCAGCAGTTAGCACAGTGGCTTTCACCTGTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055012.12 |
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| CDS CAA 90 bp | TCAGCAGCGAGGATCTGTTTGAGGTTCTTCCAGGTTCTGTTCTTCTaGCCAGCTACAGCGCCGCCATGGCCAGAGTGCACAAAGTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SAARICLRFFQVLFF*PATAPPWPECTKLG Trigger: TCCCAACTTTGTGCACTCTGGCCATGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CAA 90 bp | TCGTTCAGTTGCCATGGCAACGCCCTTTCAGCAGCGAGGATCTGTTaGAGGTTCTTCCAGGTTCTGTTCTTCTTGCCAGCTACAGCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SFSCHGNALSAARIC*RFFQVLFFLPATAP Trigger: CGGCGCTGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGCAACTGAACGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CAA 72 bp | AGGATCTGTTTGAGGTTCTTCCAGGTTCTGTTCTTCTaGCCAGCTACAGCGCCGCCATGGCCAGAGTGCACA | + |
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Preference number: 6 (lower is better) Translates to: RICLRFFQVLFF*PATAPPWPECT Trigger: TGTGCACTCTGGCCATGGCGGCGCTGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTCAAACAGATCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS TCA 72 bp | TTCTTACTAGCACCATATCCCCCTCCGCTGCTGTTGTaGGAAGGGCTAGCTGGCCTCTTCTTGCTGTTCCTA | + |
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Preference number: 6 (lower is better) Translates to: FLLAPYPPPLLL*EGLAGLFLLFL Trigger: TAGGAACAGCAAGAAGAGGCCAGCTAGCCCTTCTCACAACAGCAGCGGAGGGGGATATGGTGCTAGTAAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000141489.2 ENSMUST00000153360.8 |
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| CDS TCA 72 bp | GCCATGGCAACGCCCTTTCAGCAGCGAGGATCTGTTTaGGGTTCTTCCAGGTTCTGTTCTTCTTGCCAGCTA | + |
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Preference number: 6 (lower is better) Translates to: AMATPFQQRGSV*GSSRFCSSCQL Trigger: TAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CAA 72 bp | TGCCATGGCAACGCCCTTTCAGCAGCGAGGATCTGTTaGAGGTTCTTCCAGGTTCTGTTCTTCTTGCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: CHGNALSAARIC*RFFQVLFFLPA Trigger: AGCTGGCAAGAAGAACAGAACCTGGAAGAACCTCAAACAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CAA 72 bp | AGGAGCATCAATACTAAAGTAGTTAGGATCGTTCAGTaGCCATGGCAACGCCCTTTCAGCAGCGAGGATCTG | + |
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Preference number: 6 (lower is better) Translates to: RSINTKVVRIVQ*PWQRPFSSEDL Trigger: CAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGCAACTGAACGATCCTAACTACTTTAGTATTGATGCTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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| CDS CCA 72 bp | ATCAATACTAAAGTAGTTAGGATCGTTCAGTTGCCATaGCAACGCCCTTTCAGCAGCGAGGATCTGTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: INTKVVRIVQLP*QRPFSSEDLFE Trigger: CTCAAACAGATCCTCGCTGCTGAAAGGGCGTTGCCATGGCAACTGAACGATCCTAACTACTTTAGTATTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055012.12 ENSMUST00000125169.2 ENSMUST00000153360.8 |
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