Pregenerated sensors for INO80B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030034Ensembl transcript IDs: ENSMUST00000032109.5, ENSMUST00000113935.9, ENSMUST00000143814.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGGGGACCCCGGGCCCTCGGGCCCTCCCAGCCGTAGCTGCAGGTTaGTGCGGTAGCACTGTAGGCTGCAAAGGGCCTGGCCGGTGCGGG | + |
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Preference number: 1 (lower is better) Translates to: VGTPGPRALPAVAAG*CGSTVGCKGPGRCG Trigger: CCCGCACCGGCCAGGCCCTTTGCAGCCTACAGTGCTACCGCATCAACCTGCAGCTACGGCTGGGAGGGCCCGAGGGCCCGGGGTCCCCAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CCA 90 bp | GCAGGGCAGCCCCCACCCACTGGCAGAGGCAGAGTCGGGGACGGCTaGCTCCGCGCCTTCTGGAGGAGGGCTCGCTGTCTCGCTGTAAGC | + |
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Preference number: 1 (lower is better) Translates to: AGQPPPTGRGRVGDG*LRAFWRRARCLAVS Trigger: GCTTACAGCGAGACAGCGAGCCCTCCTCCAGAAGGCGCGGAGCCAGCCGTCCCCGACTCTGCCTCTGCCAGTGGGTGGGGGCTGCCCTGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CCA 90 bp | GTGCCACCGCCGTGGGTGTGGGAACGCCGGGAGGAAAAGACAAGGTaGAGCCCTGTGCCCCGCTGCAGTAGCGCACCATGGGTGCAGGGG | + |
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Preference number: 1 (lower is better) Translates to: VPPPWVWERREEKTR*SPVPRCSSAPWVQG Trigger: CCCCTGCACCCATGGTGCGCTACTGCAGCGGGGCACAGGGCTCCACCTTGTCTTTTCCTCCCGGCGTTCCCACACCCACGGCGGTGGCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR-3UTR GCA 90 bp | GACAGAGCATCGTGGAGCGGGGCCCGATGGGGCAGGCCGCTGTGCCACCGCCGTCAGCCGCCGCTTCCGTaGACGCTCCTCACGCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: DRASWSGARWGRPLCHRRQPPLP*TLLTLQ Trigger: CTGAAGCGTGAGGAGCGTGCACGGAAGCGGCGGCTG...ACGGCGGTGGCACAGCGGCCTGCCCCATCGGGCCCCGCTCCACGATGCTCTGTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR-3UTR CCA 90 bp | CCCTCCTCGCCGCCTGCAGCCGCCGCTTCCGTGCACGCTCCTCACGCTTCAGCAAGAGTCGGGGACGGCTaGCTCCGCGCCTTCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: PSSPPAAAASVHAPHASARVGDG*LRAFWR Trigger: CCTCCAGAAGGCGCGGAGCCAGCCGTCCCCGACTCT...TGCTGAAGCGTGAGGAGCGTGCACGGAAGCGGCGGCTGCAGGCGGCGAGGAGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR-3UTR CCA 90 bp | CGCCGTGGGTGTGGGAACGCCGGGAGGAAAAGACAAGGTGGAGCCCTGTGCCCCCGAAATTTAATAGGGTaGGGGAGACAGCAGGAATGT | + |
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Preference number: 2 (lower is better) Translates to: RRGCGNAGRKRQGGALCPRNLIG*GRQQEC Trigger: ACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCG...GGGGCACAGGGCTCCACCTTGTCTTTTCCTCCCGGCGTTCCCACACCCACGGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CAA 90 bp | GCCTTCTGGAGGAGGGCTCGCTGTCTCGCTGTAAGCAGCCGCTCATaGATCTCCTTCTTGAGGTCTCCGTTGTCATCCAGCTCTCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: AFWRRARCLAVSSRS*ISFLRSPLSSSSPF Trigger: GAAGGGAGAGCTGGATGACAACGGAGACCTCAAGAAGGAGATCAATGAGCGGCTGCTTACAGCGAGACAGCGAGCCCTCCTCCAGAAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CAA 90 bp | CTCGCTGTAAGCAGCCGCTCATTGATCTCCTTCTTGAGGTCTCCGTaGTCATCCAGCTCTCCCTTCTCCAGGGCGTCTAACCATCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: LAVSSRSLISFLRSP*SSSSPFSRASNHLC Trigger: ACAGAGATGGTTAGACGCCCTGGAGAAGGGAGAGCTGGATGACAACGGAGACCTCAAGAAGGAGATCAATGAGCGGCTGCTTACAGCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CCA 72 bp | CCCCCACCCACTGGCAGAGGCAGAGTCGGGGACGGCTaGCTCCGCGCCTTCTGGAGGAGGGCTCGCTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: PPPTGRGRVGDG*LRAFWRRARCL Trigger: GAGACAGCGAGCCCTCCTCCAGAAGGCGCGGAGCCAGCCGTCCCCGACTCTGCCTCTGCCAGTGGGTGGGGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR TCA 72 bp | CCGGGCCCTCGGGCCCTCCCAGCCGTAGCTGCAGGTTaGTGCGGTAGCACTGTAGGCTGCAAAGGGCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: PGPRALPAVAAG*CGSTVGCKGPG Trigger: GCCAGGCCCTTTGCAGCCTACAGTGCTACCGCATCAACCTGCAGCTACGGCTGGGAGGGCCCGAGGGCCCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR GCA 72 bp | CTCGGCCCTCCTCGCCGCCTGCAGCCGCCGCTTCCGTaGACGCTCCTCACGCTTCAGCAGCATCTCTTCGGT | + |
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Preference number: 3 (lower is better) Translates to: LGPPRRLQPPLP*TLLTLQQHLFG Trigger: ACCGAAGAGATGCTGCTGAAGCGTGAGGAGCGTGCACGGAAGCGGCGGCTGCAGGCGGCGAGGAGGGCCGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR GCA 72 bp | TGCGGTAGCACTGTAGGCTGCAAAGGGCCTGGCCGGTaGGGGAGCAGGCATAACGACGCGGGTGGGGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: CGSTVGCKGPGR*GSRHNDAGGGS Trigger: GCTGCCCCCACCCGCGTCGTTATGCCTGCTCCCGCACCGGCCAGGCCCTTTGCAGCCTACAGTGCTACCGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CCA 72 bp | AGAGGCAGAGTCGGGGACGGCTGGCTCCGCGCCTTCTaGAGGAGGGCTCGCTGTCTCGCTGTAAGCAGCCGC | + |
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Preference number: 3 (lower is better) Translates to: RGRVGDGWLRAF*RRARCLAVSSR Trigger: GCGGCTGCTTACAGCGAGACAGCGAGCCCTCCTCCAGAAGGCGCGGAGCCAGCCGTCCCCGACTCTGCCTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CCA 72 bp | GAGACAGCAGGAATGTGGCGTGGGAGAGGTCTTAGGTaGCCAGGAGTGGGGACCCCGGGCCCTCGGGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: ETAGMWRGRGLR*PGVGTPGPRAL Trigger: GAGGGCCCGAGGGCCCGGGGTCCCCACTCCTGGCCACCTAAGACCTCTCCCACGCCACATTCCTGCTGTCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR GCA 72 bp | GGGAACGCCGGGAGGAAAAGACAAGGTGGAGCCCTGTaGCCCGCTGCAGTAGCGCACCATGGGTGCAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: GNAGRKRQGGAL*PAAVAHHGCRG Trigger: GCCCCTGCACCCATGGTGCGCTACTGCAGCGGGGCACAGGGCTCCACCTTGTCTTTTCCTCCCGGCGTTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR CCA 72 bp | ACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTaGCGTGGGAGAGGTCTTAGGTGGCCAGGAGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: TKFNRVGETAGM*RGRGLRWPGVG Trigger: CCCCACTCCTGGCCACCTAAGACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| 3UTR GCA 72 bp | GACAGATTACTGTCTTCATCCAGCCAGGCGCGGTACTaGTCCAGAGGTACGCCTTCCATAGGTTCCTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: DRLLSSSSQARY*SRGTPSIGSSS Trigger: TGAAGAGGAACCTATGGAAGGCGTACCTCTGGAGCAGTACCGCGCCTGGCTGGATGAAGACAGTAATCTGTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| CDS-3UTR GCA 90 bp | AGGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGTGGGGCAGGCCGCTGTaGCACCGCCGTGGGTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RHCTKFNRVGETAGMWRGWGRPL*HRRGCG Trigger: CCCACACCCACGGCGGTGGCACAGCGGCCTGCCCCA...CCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR TCA 90 bp | GGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGCAGCATCTCTTCGGTaGGGGCAGGGGCAGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GTVRNLIGWGRQQECGVGAASLR*GQGQGS Trigger: GCTGCCCTGCCCCTGCCCTCACCGAAGAGATGCTGC...TCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR GCA 90 bp | GGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGTGGCCGTGGGCACCTaGCAGGCTCAGCTCCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: GTVRNLIGWGRQQECGVGVAVGT*QAQLQR Trigger: ACGCTGGAGCTGAGCCTGGCAGGTGCCCACGGCCAC...TCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CCA 90 bp | AGGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGTCGGGGACGGCTaGCTCCGCGCCTTCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: RHCTKFNRVGETAGMWRGRVGDG*LRAFWR Trigger: CCTCCAGAAGGCGCGGAGCCAGCCGTCCCCGACTCT...CCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CCA 90 bp | GGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGCAGCCCCCACCCACTaGCAGAGGCAGAGTCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: GTVRNLIGWGRQQECGVGAAPTH*QRQSRG Trigger: TCCCCGACTCTGCCTCTGCCAGTGGGTGGGGGCTGC...TCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CCA 90 bp | GTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTCTGGCTCCGCGCCTTCTaGAGGAGGGCTCGCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: VRNLIGWGRQQECGVGEVWLRAF*RRARCL Trigger: GAGACAGCGAGCCCTCCTCCAGAAGGCGCGGAGCCA...GACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CCA 90 bp | TGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTTGCAGTAGCGCACCATaGGTGCAGGGGCCGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: CTKFNRVGETAGMWRGRGCSSAP*VQGPGQ Trigger: CTGCCCCGGCCCCTGCACCCATGGTGCGCTACTGCA...ACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR GCA 90 bp | ACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGCAGCCGCCGCTTCCGTaGACGCTCCTCACGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: TVRNLIGWGRQQECGVGEQPPLP*TLLTLQ Trigger: CTGAAGCGTGAGGAGCGTGCACGGAAGCGGCGGCTG...CTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR GCA 90 bp | ACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGAGCCCTGTGCCCCGCTaGAGTAGCGCACCATGGGTG | + |
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Preference number: 4 (lower is better) Translates to: TVRNLIGWGRQQECGVGESPVPR*SSAPWV Trigger: CACCCATGGTGCGCTACTGCAGCGGGGCACAGGGCT...CTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR GCA 90 bp | CACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGACAAGGTGGAGCCCTGTaGCCCGCTGCAGTAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: HCTKFNRVGETAGMWRGRQGGAL*PAAVAH Trigger: GTGCGCTACTGCAGCGGGGCACAGGGCTCCACCTTG...TCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR GCA 90 bp | GGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGGTAGCACTGTAGGCTaGAAAGGGCCTGGCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GTVRNLIGWGRQQECGVGGSTVG*KGPGRC Trigger: GCACCGGCCAGGCCCTTTGCAGCCTACAGTGCTACC...TCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR TCA 90 bp | CACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGACATCAGGGGAGACGGTaGGCGAGGCCCCTCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: HCTKFNRVGETAGMWRGRHQGRR*ARPLRN Trigger: ATTCCTGAGGGGCCTCGCTCACCGTCTCCCCTGATG...TCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR TCA 90 bp | AGGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGGCCGTAGCTGCAGGTTaGTGCGGTAGCACTGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: RHCTKFNRVGETAGMWRGAVAAG*CGSTVG Trigger: GCCTACAGTGCTACCGCATCAACCTGCAGCTACGGC...CCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| 3UTR CAA 72 bp | AGGAGGGCTCGCTGTCTCGCTGTAAGCAGCCGCTCATaGATCTCCTTCTTGAGGTCTCCGTTGTCATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RRARCLAVSSRS*ISFLRSPLSSS Trigger: GCTGGATGACAACGGAGACCTCAAGAAGGAGATCAATGAGCGGCTGCTTACAGCGAGACAGCGAGCCCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| CDS-3UTR CCA 90 bp | GGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAAAGTGGGGACACTCTTaGTGCCCAGGACCTGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: GTVRNLIGWGRQQECGVGKWGHS*CPGPVH Trigger: GTGGACAGGTCCTGGGCACCAAGAGTGTCCCCACTT...TCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CCA 90 bp | ACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGAGGAAAAGACAAGGTaGAGCCCTGTGCCCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TVRNLIGWGRQQECGVGEEEKTR*SPVPRC Trigger: GCAGCGGGGCACAGGGCTCCACCTTGTCTTTTCCTC...CTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| 3UTR CAA 72 bp | AGCAGCCGCTCATTGATCTCCTTCTTGAGGTCTCCGTaGTCATCCAGCTCTCCCTTCTCCAGGGCGTCTAAC | + |
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Preference number: 4 (lower is better) Translates to: SSRSLISFLRSP*SSSSPFSRASN Trigger: GTTAGACGCCCTGGAGAAGGGAGAGCTGGATGACAACGGAGACCTCAAGAAGGAGATCAATGAGCGGCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143814.3 |
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| CDS-3UTR TCA 90 bp | CACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGACCTCAGGAATCACAGTaGAAGTGGGGACACTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: HCTKFNRVGETAGMWRGRPQESQ*KWGHSW Trigger: CCAAGAGTGTCCCCACTTTCACTGTGATTCCTGAGG...TCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR TCA 90 bp | TGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTAGGCGCTCAATTGTCTaGTTTTTGTGCTCCTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: CTKFNRVGETAGMWRGRGRRSIV*FLCSSA Trigger: GGCCGAGGAGCACAAAAATCAGACAATTGAGCGCCT...ACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CCA 90 bp | TGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTATTTTAAGTTTAAGTTaGGGCTTGGCAGGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: CTKFNRVGETAGMWRGRGILSLS*GLAGVC Trigger: GCAGACTCCTGCCAAGCCCCAACTTAAACTTAAAAT...ACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS CCA 90 bp | TTGGTGCCCAGGACCTGTCCACCCAGCTTGATTTTAAGTTTAAGTTaGGGCTTGGCAGGAGTCTGCAGCGTCGGTCCGGCCTCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LVPRTCPPSLILSLS*GLAGVCSVGPASSS Trigger: GGAAGAGGAGGCCGGACCGACGCTGCAGACTCCTGCCAAGCCCCAACTTAAACTTAAAATCAAGCTGGGTGGACAGGTCCTGGGCACCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032109.5 ENSMUST00000113935.9 |
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| CDS-3UTR CAA 90 bp | GTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTCAAAGTGGGGACACTCTaGGTGCCCAGGACCTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: VRNLIGWGRQQECGVGEVKVGTL*VPRTCP Trigger: TGGACAGGTCCTGGGCACCAAGAGTGTCCCCACTTT...GACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CAA 90 bp | GGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAAGTTTAAGTTGGGGCTaGGCAGGAGTCTGCAGCGTC | + |
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Preference number: 5 (lower is better) Translates to: GTVRNLIGWGRQQECGVGSLSWG*AGVCSV Trigger: GACGCTGCAGACTCCTGCCAAGCCCCAACTTAAACT...TCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CAA 90 bp | GTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTCTTCTTGAGGTCTCCGTaGTCATCCAGCTCTCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: VRNLIGWGRQQECGVGEVFLRSP*SSSSPF Trigger: GAAGGGAGAGCTGGATGACAACGGAGACCTCAAGAA...GACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CAA 90 bp | GTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAGGTCGTAAGCAGCCGCTCATaGATCTCCTTCTTGAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: VRNLIGWGRQQECGVGEVVSSRS*ISFLRS Trigger: AGACCTCAAGAAGGAGATCAATGAGCGGCTGCTTAC...GACCTCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CAA 90 bp | AGGCACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGGATTTTAAGTTTAAGTaGGGGCTTGGCAGGAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: RHCTKFNRVGETAGMWRGDFKFK*GLGRSL Trigger: CAGACTCCTGCCAAGCCCCAACTTAAACTTAAAATC...CCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS-3UTR CAA 90 bp | CACTGTACGAAATTTAATAGGGTGGGGGAGACAGCAGGAATGTGGCGTGGGAGAACCTGTCCACCCAGCTaGATTTTAAGTTTAAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: HCTKFNRVGETAGMWRGRTCPPS*ILSLSW Trigger: CCAACTTAAACTTAAAATCAAGCTGGGTGGACAGGT...TCTCCCACGCCACATTCCTGCTGTCTCCCCCACCCTATTAAATTTCGTACAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113935.9 |
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| CDS CCA 72 bp | AGGACCTGTCCACCCAGCTTGATTTTAAGTTTAAGTTaGGGCTTGGCAGGAGTCTGCAGCGTCGGTCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: RTCPPSLILSLS*GLAGVCSVGPA Trigger: GGCCGGACCGACGCTGCAGACTCCTGCCAAGCCCCAACTTAAACTTAAAATCAAGCTGGGTGGACAGGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032109.5 ENSMUST00000113935.9 |
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| CDS TCA 72 bp | TTCCTCTTCATTATCCACCACCATCAGGGGAGACGGTaGGCGAGGCCCCTCAGGAATCACAGTGAAAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: FLFIIHHHQGRR*ARPLRNHSESG Trigger: CCCACTTTCACTGTGATTCCTGAGGGGCCTCGCTCACCGTCTCCCCTGATGGTGGTGGATAATGAAGAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032109.5 ENSMUST00000113935.9 |
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| CDS CAA 72 bp | TGTCCACCCAGCTTGATTTTAAGTTTAAGTTGGGGCTaGGCAGGAGTCTGCAGCGTCGGTCCGGCCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: CPPSLILSLSWG*AGVCSVGPASS Trigger: AGAGGAGGCCGGACCGACGCTGCAGACTCCTGCCAAGCCCCAACTTAAACTTAAAATCAAGCTGGGTGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032109.5 ENSMUST00000113935.9 |
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