Pregenerated sensors for INMT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003477

Ensembl transcript IDs: ENSMUST00000003569.6

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	GGGATGGATGTTGGTGCTGAAAATAGAGAACCTTGGGTTTTCCCTTGTGACTGTCACCAGGTGCCCTCCTaGTTTCAGCAGGCCGGCCAG	+
Preference number: 4 (lower is better) Translates to: GMDVGAENREPWVFPCDCHQVPS*FQQAGQ Trigger: CTGGCCGGCCTGCTGAAACCAGGAGGGCACCTGGTG...ACAGTCACAAGGGAAAACCCAAGGTTCTCTATTTTCAGCACCAACATCCATCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR TCA 90 bp	CTGTGGAGCAAGGCTTTACAAATGATTGCTATAACTTTCCCAGGGAAGGCGATTCAGAGGCACCTGAGCTaGCCCCAGCGGGGGTGTCTT	+
Preference number: 4 (lower is better) Translates to: LWSKALQMIAITFPGKAIQRHLS*PQRGCL Trigger: AAGACACCCCCGCTGGGGTCAGCTCAGGTGCCTCTG...AATCGCCTTCCCTGGGAAAGTTATAGCAATCATTTGTAAAGCCTTGCTCCACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR CCA 90 bp	AAGCTGTGGAGCAAGGCTTTACAAATGATTGCTATAACTTTCCCAGGGAAGGCGGGCAGGCACACTCCATaGCCAGAAAGGTCAGCACGC	+
Preference number: 4 (lower is better) Translates to: KLWSKALQMIAITFPGKAGRHTP*PERSAR Trigger: GCGTGCTGACCTTTCTGGCCATGGAGTGTGCCTGCC...CGCCTTCCCTGGGAAAGTTATAGCAATCATTTGTAAAGCCTTGCTCCACAGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR GCA 90 bp	AAGCTGTGGAGCAAGGCTTTACAAATGATTGCTATAACTTTCCCAGGGAAGGCGCCTTCTCCTGCCACCTaGTTCTGTCTCCCTCCAGCT	+
Preference number: 4 (lower is better) Translates to: KLWSKALQMIAITFPGKAPSPAT*FCLPPA Trigger: AGCTGGAGGGAGACAGAAGCAGGTGGCAGGAGAAGG...CGCCTTCCCTGGGAAAGTTATAGCAATCATTTGTAAAGCCTTGCTCCACAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR TCA 90 bp	TTTAAAATGAACTTTCAACAGGGTACAATAAGAGCAAAGGGGATGGATGTTGGTTCAGCCAGAGGCACCTaGGCTGACCCCAGCGGGGGT	+
Preference number: 4 (lower is better) Translates to: FKMNFQQGTIRAKGMDVGSARGT*ADPSGG Trigger: ACCCCCGCTGGGGTCAGCTCAGGTGCCTCTGGCTGA...ACCAACATCCATCCCCTTTGCTCTTATTGTACCCTGTTGAAAGTTCATTTTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR CCA 90 bp	GGCTTTACAAATGATTGCTATAACTTTCCCAGGGAAGGCGATTCGCTGCCAGTGGGAAGCTGTAGTAGGTaGTCAGGTAGTCTTTGGGAG	+
Preference number: 4 (lower is better) Translates to: GFTNDCYNFPREGDSLPVGSCSR*SGSLWE Trigger: CTCCCAAAGACTACCTGACCACCTACTACAGCTTCC...CACTGGCAGCGAATCGCCTTCCCTGGGAAAGTTATAGCAATCATTTGTAAAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR CCA 90 bp	TGGATGTTGGTGCTGAAAATAGAGAACCTTGGGTTTTCCCTTGTGACTGTGACCCCCCAGAGAACTTCTTaGGGCCCACCATATAGTGCT	+
Preference number: 4 (lower is better) Translates to: WMLVLKIENLGFSLVTVTPQRTS*GPPYSA Trigger: AGCACTATATGGTGGGCCCCAAGAAGTTCTCTGGGG...GGTCACAGTCACAAGGGAAAACCCAAGGTTCTCTATTTTCAGCACCAACATCCA 49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR TCA 90 bp	AAGCTGTGGAGCAAGGCTTTACAAATGATTGCTATAACTTTCCCAGGGAAGGCGGGTAGTCTTTGGGAGTaGACTCTTTTTCATAGTCCT	+
Preference number: 4 (lower is better) Translates to: KLWSKALQMIAITFPGKAGSLWE*TLFHSP Trigger: AGGACTATGAAAAAGAGTTCACTCCCAAAGACTACC...CGCCTTCCCTGGGAAAGTTATAGCAATCATTTGTAAAGCCTTGCTCCACAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR GCA 90 bp	TTTAAAATGAACTTTCAACAGGGTACAATAAGAGCAAAGGGGATGGATGTTGGTTACGATTTCCTGCTCTaGCACAGGGCCAGAGTGGAA	+
Preference number: 4 (lower is better) Translates to: FKMNFQQGTIRAKGMDVGYDFLL*HRARVE Trigger: TTCCACTCTGGCCCTGTGGCAGAGCAGGAAATCGTA...ACCAACATCCATCCCCTTTGCTCTTATTGTACCCTGTTGAAAGTTCATTTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS TCA 90 bp	CATGGCCAGAAAGGTCAGCACGCAGTCAGCCAGAGGCACCTGAGCTaGCCCCAGCGGGGGTGTCTTGGTCACATCACACCTCAGGACACG	+
Preference number: 5 (lower is better) Translates to: HGQKGQHAVSQRHLS*PQRGCLGHITPQDT Trigger: CGTGTCCTGAGGTGTGATGTGACCAAGACACCCCCGCTGGGGTCAGCTCAGGTGCCTCTGGCTGACTGCGTGCTGACCTTTCTGGCCATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS CCA 90 bp	GCAAGGCTGCCCGGTAGGTATCTATATCAGGGCAGGCACACTCCATaGCCAGAAAGGTCAGCACGCAGTCAGCCAGAGGCACCTGAGCTG	+
Preference number: 5 (lower is better) Translates to: ARLPGRYLYQGRHTP*PERSARSQPEAPEL Trigger: CAGCTCAGGTGCCTCTGGCTGACTGCGTGCTGACCTTTCTGGCCATGGAGTGTGCCTGCCCTGATATAGATACCTACCGGGCAGCCTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS GCA 90 bp	GGTCTGGTAGAGGTTCTGCAGGCTAAACTTTACGATTTCCTGCTCTaGCACAGGGCCAGAGTGGAAGCTGTAGTAGGTGGTCAGGTAGTC	+
Preference number: 5 (lower is better) Translates to: GLVEVLQAKLYDFLL*HRARVEAVVGGQVV Trigger: GACTACCTGACCACCTACTACAGCTTCCACTCTGGCCCTGTGGCAGAGCAGGAAATCGTAAAGTTTAGCCTGCAGAACCTCTACCAGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR CAA 90 bp	ATGTTGGTGCTGAAAATAGAGAACCTTGGGTTTTCCCTTGTGACTGTGACCAGGACTGTCCTTCTGAGCTaGGCTTCCTTCTCCTGCCAC	+
Preference number: 5 (lower is better) Translates to: MLVLKIENLGFSLVTVTRTVLLS*ASFSCH Trigger: GTGGCAGGAGAAGGAAGCCAAGCTCAGAAGGACAGT...CCTGGTCACAGTCACAAGGGAAAACCCAAGGTTCTCTATTTTCAGCACCAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS-3UTR CAA 90 bp	AGCAAGGCTTTACAAATGATTGCTATAACTTTCCCAGGGAAGGCGATTCGCTGCCTGACAGCCAGCATCTaGAATAGCCTTCTCCACCAC	+
Preference number: 5 (lower is better) Translates to: SKALQMIAITFPGKAIRCLTASI*NSLLHH Trigger: GTGGTGGAGAAGGCTATTCAAGATGCTGGCTGTCAG...GCAGCGAATCGCCTTCCCTGGGAAAGTTATAGCAATCATTTGTAAAGCCTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS TCA 72 bp	GCCAGAAAGGTCAGCACGCAGTCAGCCAGAGGCACCTaGGCTGACCCCAGCGGGGGTGTCTTGGTCACATCA	+
Preference number: 6 (lower is better) Translates to: ARKVSTQSARGT*ADPSGGVLVTS Trigger: TGATGTGACCAAGACACCCCCGCTGGGGTCAGCTCAGGTGCCTCTGGCTGACTGCGTGCTGACCTTTCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS GCA 72 bp	TCCTGGTTTCAGCAGGCCGGCCAGTCTGCGCAAGGCTaGCCGGTAGGTATCTATATCAGGGCAGGCACACTC	+
Preference number: 6 (lower is better) Translates to: SWFQQAGQSAQG*PVGIYIRAGTL Trigger: GAGTGTGCCTGCCCTGATATAGATACCTACCGGGCAGCCTTGCGCAGACTGGCCGGCCTGCTGAAACCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS CCA 72 bp	CCCGGTAGGTATCTATATCAGGGCAGGCACACTCCATaGCCAGAAAGGTCAGCACGCAGTCAGCCAGAGGCA	+
Preference number: 6 (lower is better) Translates to: PGRYLYQGRHTP*PERSARSQPEA Trigger: TGCCTCTGGCTGACTGCGTGCTGACCTTTCTGGCCATGGAGTGTGCCTGCCCTGATATAGATACCTACCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS CAA 72 bp	CCACCTGCTTCTGTCTCCCTCCAGCTCACATGCATGTaGCACTATGGAGGACCAGTCGTAGGCTCCTGGCTC	+
Preference number: 6 (lower is better) Translates to: PPASVSLQLTCM*HYGGPVVGSWL Trigger: GAGCCAGGAGCCTACGACTGGTCCTCCATAGTGCAACATGCATGTGAGCTGGAGGGAGACAGAAGCAGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003569.6
CDS TCA 72 bp	GGAAGCTGTAGTAGGTGGTCAGGTAGTCTTTGGGAGTaGACTCTTTTTCATAGTCCTCACCTCCTATGTATA	+
Preference number: 6 (lower is better) Translates to: GSCSRWSGSLWE*TLFHSPHLLCI Trigger: TATACATAGGAGGTGAGGACTATGAAAAAGAGTTCACTCCCAAAGACTACCTGACCACCTACTACAGCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003569.6