Pregenerated sensors for INKA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042106Ensembl transcript IDs: ENSMUST00000048568.6, ENSMUST00000175914.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGCCGACTGCGGCCCCTGTTCAGCAGGGCTGCCGTCCAGTCCTCTaGTTCCAATCCCTGCCAATGTTCCAGGCAAGCATCTGGGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: LPTAAPVQQGCRPVL*FQSLPMFQASIWGG Trigger: TCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAGCAGAGGACTGGACGGCAGCCCTGCTGAACAGGGGCCGCAGTCGGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS GCA 90 bp | CCCCTGTTCAGCAGGGCTGCCGTCCAGTCCTCTGCTTCCAATCCCTaGCAATGTTCCAGGCAAGCATCTGGGGTGGACTTGGGCCTCGGA | + |
|
Preference number: 5 (lower is better) Translates to: PLFSRAAVQSSASNP*QCSRQASGVDLGLG Trigger: TCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAGCAGAGGACTGGACGGCAGCCCTGCTGAACAGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS GCA 90 bp | GTGCTTGGCGCTGGGGTACAGACGGCTCTTCCTCTCGCCATGTACTaGCTGACACCTCGGAGAAGCCAGAGTCCCAGTCTAGAGCATGCT | + |
|
Preference number: 5 (lower is better) Translates to: VLGAGVQTALPLAMY*LTPRRSQSPSLEHA Trigger: AGCATGCTCTAGACTGGGACTCTGGCTTCTCCGAGGTGTCAGGCAGTACATGGCGAGAGGAAGAGCCGTCTGTACCCCAGCGCCAAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CCA 90 bp | CTTCCAATCCCTGCCAATGTTCCAGGCAAGCATCTGGGGTGGACTTaGGCCTCGGACGGTGGGCAGGAGGTATGTTGGTTACAGCTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: LPIPANVPGKHLGWT*ASDGGQEVCWLQLP Trigger: GGGCAGCTGTAACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS CCA 90 bp | CCAGTCCTCTGCTTCCAATCCCTGCCAATGTTCCAGGCAAGCATCTaGGGTGGACTTGGGCCTCGGACGGTGGGCAGGAGGTATGTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: PVLCFQSLPMFQASI*GGLGPRTVGRRYVG Trigger: ACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAGCAGAGGACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS TCA 90 bp | GCCCTACTGCGCATAGGAATGTCACTGACTGAGAAACGCTGGCTATaGGGTGGACGTTCTCGAGGTGCTTGGCGCTGGGGTACAGACGGC | + |
|
Preference number: 5 (lower is better) Translates to: ALLRIGMSLTEKRWL*GGRSRGAWRWGTDG Trigger: GCCGTCTGTACCCCAGCGCCAAGCACCTCGAGAACGTCCACCTCATAGCCAGCGTTTCTCAGTCAGTGACATTCCTATGCGCAGTAGGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CCA 90 bp | CAATGTTCCAGGCAAGCATCTGGGGTGGACTTGGGCCTCGGACGGTaGGCAGGAGGTATGTTGGTTACAGCTGCCCTACTGCGCATAGGA | + |
|
Preference number: 5 (lower is better) Translates to: QCSRQASGVDLGLGR*AGGMLVTAALLRIG Trigger: TCCTATGCGCAGTAGGGCAGCTGTAACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CCA 90 bp | CCTCTGCTTCCAATCCCTGCCAATGTTCCAGGCAAGCATCTGGGGTaGACTTGGGCCTCGGACGGTGGGCAGGAGGTATGTTGGTTACAG | + |
|
Preference number: 5 (lower is better) Translates to: PLLPIPANVPGKHLG*TWASDGGQEVCWLQ Trigger: CTGTAACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAGCAGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS GCA 90 bp | GTACTGCCTGACACCTCGGAGAAGCCAGAGTCCCAGTCTAGAGCATaGTCCCTAGGACATCCCAAGGGTAAACCCTTGTCTTCTGCTACC | + |
|
Preference number: 5 (lower is better) Translates to: VLPDTSEKPESQSRA*SLGHPKGKPLSSAT Trigger: GGTAGCAGAAGACAAGGGTTTACCCTTGGGATGTCCTAGGGAGCATGCTCTAGACTGGGACTCTGGCTTCTCCGAGGTGTCAGGCAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS GCA 72 bp | CAGGGGCTGCCGACTGCGGCCCCTGTTCAGCAGGGCTaGCGTCCAGTCCTCTGCTTCCAATCCCTGCCAATG | + |
|
Preference number: 6 (lower is better) Translates to: QGLPTAAPVQQG*RPVLCFQSLPM Trigger: CATTGGCAGGGATTGGAAGCAGAGGACTGGACGGCAGCCCTGCTGAACAGGGGCCGCAGTCGGCAGCCCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS CAA 90 bp | TCTGCAGGCAGGTCAGGTTCTGAGCGAGGTGGGCAGGACAACCTCTaGCTTGCCATAGCTGTCCGTCGAGCCCTGGCCAGCCTACGCCGT | + |
|
Preference number: 6 (lower is better) Translates to: SAGRSGSERGGQDNL*LAIAVRRALASLRR Trigger: ACGGCGTAGGCTGGCCAGGGCTCGACGGACAGCTATGGCAAGCAAGAGGTTGTCCTGCCCACCTCGCTCAGAACCTGACCTGCCTGCAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS GCA 72 bp | GCGGCCCCTGTTCAGCAGGGCTGCCGTCCAGTCCTCTaGTTCCAATCCCTGCCAATGTTCCAGGCAAGCATC | + |
|
Preference number: 6 (lower is better) Translates to: AAPVQQGCRPVL*FQSLPMFQASI Trigger: GATGCTTGCCTGGAACATTGGCAGGGATTGGAAGCAGAGGACTGGACGGCAGCCCTGCTGAACAGGGGCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS CCA 72 bp | TGCTTCCAATCCCTGCCAATGTTCCAGGCAAGCATCTaGGGTGGACTTGGGCCTCGGACGGTGGGCAGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: CFQSLPMFQASI*GGLGPRTVGRR Trigger: CCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS CAA 72 bp | AGGTCAGGTTCTGAGCGAGGTGGGCAGGACAACCTCTaGCTTGCCATAGCTGTCCGTCGAGCCCTGGCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: RSGSERGGQDNL*LAIAVRRALAS Trigger: GCTGGCCAGGGCTCGACGGACAGCTATGGCAAGCAAGAGGTTGTCCTGCCCACCTCGCTCAGAACCTGACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS CCA 72 bp | AGGCAAGCATCTGGGGTGGACTTGGGCCTCGGACGGTaGGCAGGAGGTATGTTGGTTACAGCTGCCCTACTG | + |
|
Preference number: 6 (lower is better) Translates to: RQASGVDLGLGR*AGGMLVTAALL Trigger: CAGTAGGGCAGCTGTAACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CCA 72 bp | CCAATCCCTGCCAATGTTCCAGGCAAGCATCTGGGGTaGACTTGGGCCTCGGACGGTGGGCAGGAGGTATGT | + |
|
Preference number: 6 (lower is better) Translates to: PIPANVPGKHLG*TWASDGGQEVC Trigger: ACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS CAA 72 bp | GAAACGCTGGCTATGAGGTGGACGTTCTCGAGGTGCTaGGCGCTGGGGTACAGACGGCTCTTCCTCTCGCCA | + |
|
Preference number: 6 (lower is better) Translates to: ETLAMRWTFSRC*ALGYRRLFLSP Trigger: TGGCGAGAGGAAGAGCCGTCTGTACCCCAGCGCCAAGCACCTCGAGAACGTCCACCTCATAGCCAGCGTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS GCA 72 bp | GCTGGGGTACAGACGGCTCTTCCTCTCGCCATGTACTaGCTGACACCTCGGAGAAGCCAGAGTCCCAGTCTA | + |
|
Preference number: 6 (lower is better) Translates to: AGVQTALPLAMY*LTPRRSQSPSL Trigger: TAGACTGGGACTCTGGCTTCTCCGAGGTGTCAGGCAGTACATGGCGAGAGGAAGAGCCGTCTGTACCCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CAA 90 bp | GCATCTGGGGTGGACTTGGGCCTCGGACGGTGGGCAGGAGGTATGTaGGTTACAGCTGCCCTACTGCGCATAGGAATGTCACTGACTGAG | + |
|
Preference number: 6 (lower is better) Translates to: ASGVDLGLGRWAGGM*VTAALLRIGMSLTE Trigger: CTCAGTCAGTGACATTCCTATGCGCAGTAGGGCAGCTGTAACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CAA 72 bp | GTGGACTTGGGCCTCGGACGGTGGGCAGGAGGTATGTaGGTTACAGCTGCCCTACTGCGCATAGGAATGTCA | + |
|
Preference number: 6 (lower is better) Translates to: VDLGLGRWAGGM*VTAALLRIGMS Trigger: TGACATTCCTATGCGCAGTAGGGCAGCTGTAACCAACATACCTCCTGCCCACCGTCCGAGGCCCAAGTCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS GCA 72 bp | GACACCTCGGAGAAGCCAGAGTCCCAGTCTAGAGCATaGTCCCTAGGACATCCCAAGGGTAAACCCTTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: DTSEKPESQSRA*SLGHPKGKPLS Trigger: AGACAAGGGTTTACCCTTGGGATGTCCTAGGGAGCATGCTCTAGACTGGGACTCTGGCTTCTCCGAGGTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS TCA 72 bp | TCCGAGGCCCTGAACTGGCGCTTTGGCTGTACATTTTaGTCAGTTCTGGGTTTTGGTTGCAGTGGGCCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SEALNWRFGCTF*SVLGFGCSGPD Trigger: GTCTGGCCCACTGCAACCAAAACCCAGAACTGATCAAAATGTACAGCCAAAGCGCCAGTTCAGGGCCTCGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CAA 72 bp | ATCCGAGGCCCTGAACTGGCGCTTTGGCTGTACATTTaGATCAGTTCTGGGTTTTGGTTGCAGTGGGCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: IRGPELALWLYI*ISSGFWLQWAR Trigger: TCTGGCCCACTGCAACCAAAACCCAGAACTGATCAAAATGTACAGCCAAAGCGCCAGTTCAGGGCCTCGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CAA 90 bp | TTCCAAAACATCCGAGGCCCTGAACTGGCGCTTTGGCTGTACATTTaGATCAGTTCTGGGTTTTGGTTGCAGTGGGCCAGACATTGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: FQNIRGPELALWLYI*ISSGFWLQWARHWR Trigger: CCTCCAATGTCTGGCCCACTGCAACCAAAACCCAGAACTGATCAAAATGTACAGCCAAAGCGCCAGTTCAGGGCCTCGGATGTTTTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS TCA 72 bp | AGCAGACAGAGTCCTCTTCCAAAACATCCGAGGCCCTaGACTGGCGCTTTGGCTGTACATTTTGATCAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: SRQSPLPKHPRP*TGALAVHFDQF Trigger: GAACTGATCAAAATGTACAGCCAAAGCGCCAGTTCAGGGCCTCGGATGTTTTGGAAGAGGACTCTGTCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048568.6 ENSMUST00000175914.2 |
||
| CDS CAA 72 bp | GTGCTCGGGGTACATCTCCATCACTCCCCTCACTGGTaGCTTCAGGCAACTCCATCCAATTGTGAACTAAAT | + |
|
Preference number: 6 (lower is better) Translates to: VLGVHLHHSPHW*LQATPSNCELN Trigger: ATTTAGTTCACAATTGGATGGAGTTGCCTGAAGCAACCAGTGAGGGGAGTGATGGAGATGTACCCCGAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||
| CDS TCA 72 bp | CCCTCACTGGTTGCTTCAGGCAACTCCATCCAATTGTaGACTAAATCAGCAAAACAGTTATCCCCTAGCACC | + |
|
Preference number: 6 (lower is better) Translates to: PSLVASGNSIQL*TKSAKQLSPST Trigger: GGTGCTAGGGGATAACTGTTTTGCTGATTTAGTTCACAATTGGATGGAGTTGCCTGAAGCAACCAGTGAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048568.6 |
||