Pregenerated sensors for INIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038544Ensembl transcript IDs: ENSMUST00000095063.11, ENSMUST00000107526.8, ENSMUST00000143756.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTaGTGGGATTATAGTGTGCACCACCACTGCATGCATCACCCACCC | + |
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Preference number: 1 (lower is better) Translates to: RLASNSEIRLPLPPE*WDYSVHHHCMHHPP Trigger: GGGTGGGTGATGCATGCAGTGGTGGTGCACACTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 90 bp | CTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTaGCTCCCGAGTGCTGGGATTATAGTGTGCACCACCACTGCATGC | + |
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Preference number: 1 (lower is better) Translates to: LCRPGWPQTQKSACL*LPSAGIIVCTTTAC Trigger: GCATGCAGTGGTGGTGCACACTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 90 bp | GACCACTGGAAAGTCCTCCTGGTTAGTGGGACTGGACTGTCAGCATaGCAACATCTAGAACCACTACAAGATGAGCCTCTGGGCATGCCT | + |
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Preference number: 1 (lower is better) Translates to: DHWKVLLVSGTGLSA*QHLEPLQDEPLGMP Trigger: AGGCATGCCCAGAGGCTCATCTTGTAGTGGTTCTAGATGTTGTCATGCTGACAGTCCAGTCCCACTAACCAGGAGGACTTTCCAGTGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 90 bp | GCTGAGATCACAGGCATGTGCCATCCTCAGAGCTTGTATGTGCAGTaGTGGGGTCAAACCCAGGGCTTCCCACATGATAATTCAGTCCTT | + |
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Preference number: 1 (lower is better) Translates to: AEITGMCHPQSLYVQ*WGQTQGFPHDNSVL Trigger: AAGGACTGAATTATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAGGATGGCACATGCCTGTGATCTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR GCA 90 bp | CTAGTGCTGAGATCACAGGCATGTGCCATCCTCAGAGCTTGTATGTaGAGTGATGGGGTCAAACCCAGGGCTTCCCACATGATAATTCAG | + |
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Preference number: 1 (lower is better) Translates to: LVLRSQACAILRACM*SDGVKPRASHMIIQ Trigger: CTGAATTATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAGGATGGCACATGCCTGTGATCTCAGCACTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR GCA 90 bp | CAAAATCACTACCTAGGCAAGGATGGCCTTGAACTTCCAATCTTCTaGCTCAATTCCTCTAGTGCTGAGATCACAGGCATGTGCCATCCT | + |
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Preference number: 1 (lower is better) Translates to: QNHYLGKDGLELPIF*LNSSSAEITGMCHP Trigger: AGGATGGCACATGCCTGTGATCTCAGCACTAGAGGAATTGAGGCAGAAGATTGGAAGTTCAAGGCCATCCTTGCCTAGGTAGTGATTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR GCA 90 bp | CAACTAAAGATGTTTAAATTCCCCCAACAGCAGAGAGGATGGAGATaGAGTCAGTTACCCATGGTGATGAGGCTCGGTAAAACACATCCA | + |
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Preference number: 1 (lower is better) Translates to: QLKMFKFPQQQRGWR*SQLPMVMRLGKTHP Trigger: TGGATGTGTTTTACCGAGCCTCATCACCATGGGTAACTGACTGCATCTCCATCCTCTCTGCTGTTGGGGGAATTTAAACATCTTTAGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CCA 90 bp | ACGCTCCACCCACTGATGAGTGGCATCACTCCCTGGCTAGAATACTaGTTACATAAAGACAGCACAGTAGAATCCATTTGTTCTCGAATT | + |
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Preference number: 1 (lower is better) Translates to: TLHPLMSGITPWLEY*LHKDSTVESICSRI Trigger: AATTCGAGAACAAATGGATTCTACTGTGCTGTCTTTATGTAACCAGTATTCTAGCCAGGGAGTGATGCCACTCATCAGTGGGTGGAGCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR CCA 90 bp | GGGGGAGGGTTGTGCTCTCACTCTGTAGCCCAGACTGGCCTTGAATTCATAGTGGAGCAAGGGGGTCCCTaGGTCAGCAGCAGACACAGG | + |
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Preference number: 2 (lower is better) Translates to: GGGLCSHSVAQTGLEFIVEQGGP*VSSRHR Trigger: CCTGTGTCTGCTGCTGACCCAGGGACCCCCTTGCTC...CACTATGAATTCAAGGCCAGTCTGGGCTACAGAGTGAGAGCACAACCCTCCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR CCA 90 bp | CTGCATGCATCACCCACCCGTGACCCCAGCAATGGATTCACTCAAGGCTTCATCCAGAGGGAAGCTGGATaGCCCTTTGAGGGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: LHASPTRDPSNGFTQGFIQREAG*PFEGQE Trigger: CTCCTGCCCCTCAAAGGGCCATCCAGCTTCCCTCTG...GATGAAGCCTTGAGTGAATCCATTGCTGGGGTCACGGGTGGGTGATGCATGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CAA 90 bp | CGACTGTGGAGGAGATGTGGCCAACTGCTTCAAGCTCCTGCTGCCTaGACCTTCCTGACCATGACAGACTGTGCCTCAAACTGTGAATCT | + |
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Preference number: 2 (lower is better) Translates to: RLWRRCGQLLQAPAA*TFLTMTDCASNCES Trigger: AGATTCACAGTTTGAGGCACAGTCTGTCATGGTCAGGAAGGTCAAGGCAGCAGGAGCTTGAAGCAGTTGGCCACATCTCCTCCACAGTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR TCA 90 bp | CTCAGAGCTTGTATGTGCAGTGATGGGGTCAAACCCAGGGCTTCCCACATGATAGAGACTAAGCGATCCTaGGTCCCAGGGAAAGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: LRACMCSDGVKPRASHMIETKRS*VPGKVQ Trigger: TTGGACTTTCCCTGGGACTCAGGATCGCTTAGTCTC...TATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR GCA 90 bp | ATCAGCCCTTTCATCCGGGTATTTGATCTGACCCAGGAAGGGAAAACAAGCACCCACTGCTGCTTCACTTaGACTGAGCAGGACGGCGTA | + |
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Preference number: 2 (lower is better) Translates to: ISPFIRVFDLTQEGKTSTHCCFT*TEQDGV Trigger: TACGCCGTCCTGCTCAGTGCAAGTGAAGCAGCAGTG...GGTGCTTGTTTTCCCTTCCTGGGTCAGATCAAATACCCGGATGAAAGGGCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR TCA 90 bp | AGCGATCCTGAGTCCCAGGGAAAGTCCAATGGCAGTGCAAAGAAGTCCGCCTCGAGTTCTCCAAAGTTCTaGAAGTCAGTTTGTATAGAG | + |
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Preference number: 2 (lower is better) Translates to: SDPESQGKSNGSAKKSASSSPKF*KSVCIE Trigger: CTCTATACAAACTGACTTTCAGAACTTTGGAGAACT...CGAGGCGGACTTCTTTGCACTGCCATTGGACTTTCCCTGGGACTCAGGATCGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR TCA 90 bp | TATACCTTAGACTGGTCTCAAAATCACTACCTAGGCAAGGATGGCCTTGAACTTGAGACTAAGCGATCCTaGGTCCCAGGGAAAGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: YTLDWSQNHYLGKDGLELETKRS*VPGKVQ Trigger: TTGGACTTTCCCTGGGACTCAGGATCGCTTAGTCTC...AAGTTCAAGGCCATCCTTGCCTAGGTAGTGATTTTGAGACCAGTCTAAGGTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR GCA 90 bp | ATCAGCCCTTTCATCCGGGTATTTGATCTGACCCAGGAAGGGAAAACAAGCACCGAACTTCCAATCTTCTaGCTCAATTCCTCTAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: ISPFIRVFDLTQEGKTSTELPIF*LNSSSA Trigger: AGCACTAGAGGAATTGAGGCAGAAGATTGGAAGTTC...GGTGCTTGTTTTCCCTTCCTGGGTCAGATCAAATACCCGGATGAAAGGGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR CCA 90 bp | GTGGGAGGTACATATATAAATAAGCACCTCTGTTCTTGTTCAAGTTTGGCCCTGCCAGGGAAAGTCCAATaGCAGTGCAAAGAAGTCCGC | + |
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Preference number: 2 (lower is better) Translates to: VGGTYINKHLCSCSSLALPGKVQ*QCKEVR Trigger: GCGGACTTCTTTGCACTGCCATTGGACTTTCCCTGG...CAGGGCCAAACTTGAACAAGAACAGAGGTGCTTATTTATATATGTACCTCCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR TCA 90 bp | GGTCAAACCCAGGGCTTCCCACATGATAATTCAGTCCTTGTTGAAGGTGATGCAAGTTCTCCAAAGTTCTaGAAGTCAGTTTGTATAGAG | + |
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Preference number: 2 (lower is better) Translates to: GQTQGFPHDNSVLVEGDASSPKF*KSVCIE Trigger: CTCTATACAAACTGACTTTCAGAACTTTGGAGAACT...TGCATCACCTTCAACAAGGACTGAATTATCATGTGGGAAGCCCTGGGTTTGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCAAACCCAGGGCTTCCCACATGATAATTCAGTCCTTGTTGAAGGTGATGCAGAGAACTTTGACATTTaGTATTACAAGGTCCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: GQTQGFPHDNSVLVEGDAENFDI*YYKVPC Trigger: ACAAGGGACCTTGTAATAGCAAATGTCAAAGTTCTC...TGCATCACCTTCAACAAGGACTGAATTATCATGTGGGAAGCCCTGGGTTTGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR CCA 90 bp | ATCAGCCCTTTCATCCGGGTATTTGATCTGACCCAGGAAGGGAAAACAAGCACCTCATATACCTTAGACTaGTCTCAAAATCACTACCTA | + |
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Preference number: 2 (lower is better) Translates to: ISPFIRVFDLTQEGKTSTSYTLD*SQNHYL Trigger: TAGGTAGTGATTTTGAGACCAGTCTAAGGTATATGA...GGTGCTTGTTTTCCCTTCCTGGGTCAGATCAAATACCCGGATGAAAGGGCTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR TCA 90 bp | CAACATGAAGTGAGAGTACACGTCCATTTACAGCTGCCACATTTCTTAGGCTGCGATTTTGGTTATTTTTaGGGCACAGTCTCATATACC | + |
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Preference number: 2 (lower is better) Translates to: QHEVRVHVHLQLPHFLGCDFGYF*GTVSYT Trigger: GGTATATGAGACTGTGCCTCAAAAATAACCAAAATC...GCAGCCTAAGAAATGTGGCAGCTGTAAATGGACGTGTACTCTCACTTCATGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR GCA 90 bp | GAAGTGAGAGTACACGTCCATTTACAGCTGCCACATTTCTTAGGCTGCTTTTCAGAGAACTTTGACATTTaGTATTACAAGGTCCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: EVRVHVHLQLPHFLGCFSENFDI*YYKVPC Trigger: ACAAGGGACCTTGTAATAGCAAATGTCAAAGTTCTC...TGAAAAGCAGCCTAAGAAATGTGGCAGCTGTAAATGGACGTGTACTCTCACTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR-3UTR GCA 90 bp | GTGGGAGGTACATATATAAATAAGCACCTCTGTTCTTGTTCAAGTTTGGCCCTGGTCACATCATTCATTTaGTACCACTGTAGCATTTAT | + |
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Preference number: 2 (lower is better) Translates to: VGGTYINKHLCSCSSLALVTSFI*YHCSIY Trigger: ATAAATGCTACAGTGGTAGCAAATGAATGATGTGAC...CAGGGCCAAACTTGAACAAGAACAGAGGTGCTTATTTATATATGTACCTCCCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR TCA 72 bp | AGGCATGATCCACCACACTGGGCTTGGCTGGAAATGTaGCCTTTGCCTGGGTGTCCCTTCAGTCCCTTGCCA | + |
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Preference number: 3 (lower is better) Translates to: RHDPPHWAWLEM*PLPGCPFSPLP Trigger: TGGCAAGGGACTGAAGGGACACCCAGGCAAAGGTCACATTTCCAGCCAAGCCCAGTGTGGTGGATCATGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTaGCTCTGCCTCCCGAGTGCTGGGATTATAGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPQTQKSA*LCLPSAGIIVC Trigger: GCACACTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 72 bp | ATAGTGTGCACCACCACTGCATGCATCACCCACCCGTaGCCCCAGCAATGGATTCACTCAAGGCTTCATCCG | + |
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Preference number: 3 (lower is better) Translates to: IVCTTTACITHP*PQQWIHSRLHP Trigger: CGGATGAAGCCTTGAGTGAATCCATTGCTGGGGTCACGGGTGGGTGATGCATGCAGTGGTGGTGCACACTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | TTAGCGAAATGCAAGACGAGGAAGACTACTAGGAGGTaGAGAGGGAAGCTGGATGGCCCTTTGAGGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: LAKCKTRKTTRR*RGKLDGPLRGR Trigger: CCTGCCCCTCAAAGGGCCATCCAGCTTCCCTCTGCACCTCCTAGTAGTCTTCCTCGTCTTGCATTTCGCTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CCA 72 bp | ACCACACTGGGCTTGGCTGGAAATGTGACCTTTGCCTaGGTGTCCCTTCAGTCCCTTGCCAGTTCTATCGTC | + |
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Preference number: 3 (lower is better) Translates to: TTLGLAGNVTFA*VSLQSLASSIV Trigger: GACGATAGAACTGGCAAGGGACTGAAGGGACACCCAGGCAAAGGTCACATTTCCAGCCAAGCCCAGTGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | AGATCACAGGCATGTGCCATCCTCAGAGCTTGTATGTaGAGTGATGGGGTCAAACCCAGGGCTTCCCACATG | + |
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Preference number: 3 (lower is better) Translates to: RSQACAILRACM*SDGVKPRASHM Trigger: CATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAGGATGGCACATGCCTGTGATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR GCA 72 bp | ATCCACCACACTGGGCTTGGCTGGAAATGTGACCTTTaGCTGGGTGTCCCTTCAGTCCCTTGCCAGTTCTAT | + |
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Preference number: 3 (lower is better) Translates to: IHHTGLGWKCDL*LGVPSVPCQFY Trigger: ATAGAACTGGCAAGGGACTGAAGGGACACCCAGGCAAAGGTCACATTTCCAGCCAAGCCCAGTGTGGTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | TCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTaGTGGGATTATAGTGTGCACCACCACTGCATGCAT | + |
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Preference number: 3 (lower is better) Translates to: SNSEIRLPLPPE*WDYSVHHHCMH Trigger: ATGCATGCAGTGGTGGTGCACACTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CCA 72 bp | ACGTACCCGAAGCAGAGGACCACTGGAAAGTCCTCCTaGTTAGTGGGACTGGACTGTCAGCATGACAACATC | + |
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Preference number: 3 (lower is better) Translates to: TYPKQRTTGKSS*LVGLDCQHDNI Trigger: GATGTTGTCATGCTGACAGTCCAGTCCCACTAACCAGGAGGACTTTCCAGTGGTCCTCTGCTTCGGGTACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CCA 72 bp | CACAGAAATGGGTACGTACCCGAAGCAGAGGACCACTaGAAAGTCCTCCTGGTTAGTGGGACTGGACTGTCA | + |
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Preference number: 3 (lower is better) Translates to: HRNGYVPEAEDH*KVLLVSGTGLS Trigger: TGACAGTCCAGTCCCACTAACCAGGAGGACTTTCCAGTGGTCCTCTGCTTCGGGTACGTACCCATTTCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 72 bp | ACAGGCATGTGCCATCCTCAGAGCTTGTATGTGCAGTaGTGGGGTCAAACCCAGGGCTTCCCACATGATAAT | + |
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Preference number: 3 (lower is better) Translates to: TGMCHPQSLYVQ*WGQTQGFPHDN Trigger: ATTATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAGGATGGCACATGCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR TCA 72 bp | AGGGTTGTGCTCTCACTCTGTAGCCCAGACTGGCCTTaGATTCATAGTGATTCTCCTGCCTTAGCTGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: RVVLSLCSPDWP*IHSDSPALAEC Trigger: GCACTCAGCTAAGGCAGGAGAATCACTATGAATTCAAGGCCAGTCTGGGCTACAGAGTGAGAGCACAACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | AGCAGGCAAGGTTTCAACAGCAGAAACCCTTCTCTCTaGCTAACGTCAGTAGCAGGTTCAGAAGCATGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SRQGFNSRNPSL*LTSVAGSEAWQ Trigger: CTGCCATGCTTCTGAACCTGCTACTGACGTTAGGCAGAGAGAAGGGTTTCTGCTGTTGAAACCTTGCCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CCA 72 bp | CCATTTGTTCTCGAATTCTCGACTGTGGAGGAGATGTaGCCAACTGCTTCAAGCTCCTGCTGCCTTGACCTT | + |
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Preference number: 3 (lower is better) Translates to: PFVLEFSTVEEM*PTASSSCCLDL Trigger: AAGGTCAAGGCAGCAGGAGCTTGAAGCAGTTGGCCACATCTCCTCCACAGTCGAGAATTCGAGAACAAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 72 bp | ATAAAACCACTCAGGCCCACCACTTCTGCAGCAACATaGAGTGAGAGTACACGTCCATTTACAGCTGCCACA | + |
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Preference number: 3 (lower is better) Translates to: IKPLRPTTSAAT*SESTRPFTAAT Trigger: TGTGGCAGCTGTAAATGGACGTGTACTCTCACTTCATGTTGCTGCAGAAGTGGTGGGCCTGAGTGGTTTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR TCA 72 bp | AAAGTCCTCCTGGTTAGTGGGACTGGACTGTCAGCATaGCAACATCTAGAACCACTACAAGATGAGCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: KVLLVSGTGLSA*QHLEPLQDEPL Trigger: CAGAGGCTCATCTTGTAGTGGTTCTAGATGTTGTCATGCTGACAGTCCAGTCCCACTAACCAGGAGGACTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | TACCTAGGCAAGGATGGCCTTGAACTTCCAATCTTCTaGCTCAATTCCTCTAGTGCTGAGATCACAGGCATG | + |
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Preference number: 3 (lower is better) Translates to: YLGKDGLELPIF*LNSSSAEITGM Trigger: CATGCCTGTGATCTCAGCACTAGAGGAATTGAGGCAGAAGATTGGAAGTTCAAGGCCATCCTTGCCTAGGTA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR GCA 72 bp | ATGTTTAAATTCCCCCAACAGCAGAGAGGATGGAGATaGAGTCAGTTACCCATGGTGATGAGGCTCGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: MFKFPQQQRGWR*SQLPMVMRLGK Trigger: TTTACCGAGCCTCATCACCATGGGTAACTGACTGCATCTCCATCCTCTCTGCTGTTGGGGGAATTTAAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CCA 72 bp | CTAAAGATGTTTAAATTCCCCCAACAGCAGAGAGGATaGAGATGCAGTCAGTTACCCATGGTGATGAGGCTC | + |
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Preference number: 3 (lower is better) Translates to: LKMFKFPQQQRG*RCSQLPMVMRL Trigger: GAGCCTCATCACCATGGGTAACTGACTGCATCTCCATCCTCTCTGCTGTTGGGGGAATTTAAACATCTTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 72 bp | ACTGTGAATCTAGATCAGCCCTTTCATCCGGGTATTTaGTCTGACCCAGGAAGGGAAAACAAGCACCTAGAT | + |
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Preference number: 3 (lower is better) Translates to: TVNLDQPFHPGI*SDPGRENKHLD Trigger: ATCTAGGTGCTTGTTTTCCCTTCCTGGGTCAGATCAAATACCCGGATGAAAGGGCTGATCTAGATTCACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR TCA 72 bp | CCTCAACAATGTTACCTCCCCATATGCAGGTCTCTGTaGCCTTTTTGTCCCTCAAACACAGCATATACCAGA | + |
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Preference number: 3 (lower is better) Translates to: PQQCYLPICRSL*PFCPSNTAYTR Trigger: TCTGGTATATGCTGTGTTTGAGGGACAAAAAGGTCACAGAGACCTGCATATGGGGAGGTAACATTGTTGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR-3UTR CAA 90 bp | ATTACAAAGTCACATAGCAGGCAAGGTTTCAACAGCAGAAACCCTTCTCTCTGCTGTTCTTGTTCAAGTTaGGCCCTGTTGAGCAACTTG | + |
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Preference number: 3 (lower is better) Translates to: ITKSHSRQGFNSRNPSLCCSCSS*ALLSNL Trigger: CAAGTTGCTCAACAGGGCCAAACTTGAACAAGAACA...GCAGAGAGAAGGGTTTCTGCTGTTGAAACCTTGCCTGCTATGTGACTTTGTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR GCA 72 bp | TCAGTTTGTATAGAGCTGAGTGAGAACTTTGACATTTaGTATTACAAGGTCCCTTGTCGCAGCAGGCGCTTT | + |
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Preference number: 3 (lower is better) Translates to: SVCIELSENFDI*YYKVPCRSRRF Trigger: AAAGCGCCTGCTGCGACAAGGGACCTTGTAATAGCAAATGTCAAAGTTCTCACTCAGCTCTATACAAACTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| 3UTR CCA 72 bp | CCACTGATGAGTGGCATCACTCCCTGGCTAGAATACTaGTTACATAAAGACAGCACAGTAGAATCCATTTGT | + |
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Preference number: 3 (lower is better) Translates to: PLMSGITPWLEY*LHKDSTVESIC Trigger: ACAAATGGATTCTACTGTGCTGTCTTTATGTAACCAGTATTCTAGCCAGGGAGTGATGCCACTCATCAGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| CDS-3UTR TCA 90 bp | GTCCCAGGGAAAGTCCAATGGCAGTGCAAAGAAGTCCGCCTCGGCCAGCACAGCCCAGAGGAATGTGCGTaGGCATGCTGCAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: VPGKVQWQCKEVRLGQHSPEECA*ACCKAA Trigger: GGCAGCTTTGCAGCATGCTCACGCACATTCCTCTGG...GCTGTGCTGGCCGAGGCGGACTTCTTTGCACTGCCATTGGACTTTCCCTGGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR TCA 90 bp | GTTGAAGGTGATGCAGAGTTCATGAGACTAAGCGATCCTGAGTCCCAGGGAAAGCCAGAGGAATGTGCGTaGGCATGCTGCAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: VEGDAEFMRLSDPESQGKPEECA*ACCKAA Trigger: GGCAGCTTTGCAGCATGCTCACGCACATTCCTCTGG...CTTTCCCTGGGACTCAGGATCGCTTAGTCTCATGAACTCTGCATCACCTTCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR GCA 90 bp | CTCAGAGCTTGTATGTGCAGTGATGGGGTCAAACCCAGGGCTTCCCACATGATAAGCATGCTGCAAAGCTaGCTTCTGCTGGGCAGCGAT | + |
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Preference number: 4 (lower is better) Translates to: LRACMCSDGVKPRASHMISMLQS*LLLGSD Trigger: ATCGCTGCCCAGCAGAAGGCAGCTTTGCAGCATGCT...TATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR CCA 90 bp | CTCAGAGCTTGTATGTGCAGTGATGGGGTCAAACCCAGGGCTTCCCACATGATATGCTGCTGCTCAGCATaGTCCCGGAAGTCCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: LRACMCSDGVKPRASHMICCCSA*SRKSLV Trigger: TACCAAGGACTTCCGGGACCATGCTGAGCAGCAGCA...TATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR CCA 90 bp | CAACATGAAGTGAGAGTACACGTCCATTTACAGCTGCCACATTTCTTAGGCTGCTGCTGCTGCTCAGCATaGTCCCGGAAGTCCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: QHEVRVHVHLQLPHFLGCCCCSA*SRKSLV Trigger: TACCAAGGACTTCCGGGACCATGCTGAGCAGCAGCA...GCAGCCTAAGAAATGTGGCAGCTGTAAATGGACGTGTACTCTCACTTCATGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR GCA 90 bp | ACACCTATAGCAAACTATCAGAAGGGAGTAAAACTGAATATTGCCCCAACTAAAAGCATGCTGCAAAGCTaGCTTCTGCTGGGCAGCGAT | + |
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Preference number: 4 (lower is better) Translates to: TPIANYQKGVKLNIAPTKSMLQS*LLLGSD Trigger: ATCGCTGCCCAGCAGAAGGCAGCTTTGCAGCATGCT...TTTAGTTGGGGCAATATTCAGTTTTACTCCCTTCTGATAGTTTGCTATAGGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| 3UTR CAA 72 bp | ATGTTACCTCCCCATATGCAGGTCTCTGTGACCTTTTaGTCCCTCAAACACAGCATATACCAGAGTAGATAT | + |
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Preference number: 4 (lower is better) Translates to: MLPPHMQVSVTF*SLKHSIYQSRY Trigger: ATATCTACTCTGGTATATGCTGTGTTTGAGGGACAAAAAGGTCACAGAGACCTGCATATGGGGAGGTAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| CDS-3UTR CAA 90 bp | CTCAGAGCTTGTATGTGCAGTGATGGGGTCAAACCCAGGGCTTCCCACATGATATGGTCCCGGAAGTCCTaGGTAAGAGAGGGTCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LRACMCSDGVKPRASHMIWSRKS*VREGLE Trigger: CTCCAGACCCTCTCTTACCAAGGACTTCCGGGACCA...TATCATGTGGGAAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR CAA 90 bp | CAACATGAAGTGAGAGTACACGTCCATTTACAGCTGCCACATTTCTTAGGCTGCTGGTCCCGGAAGTCCTaGGTAAGAGAGGGTCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: QHEVRVHVHLQLPHFLGCWSRKS*VREGLE Trigger: CTCCAGACCCTCTCTTACCAAGGACTTCCGGGACCA...GCAGCCTAAGAAATGTGGCAGCTGTAAATGGACGTGTACTCTCACTTCATGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS-3UTR CAA 90 bp | AAGTCACATAGCAGGCAAGGTTTCAACAGCAGAAACCCTTCTCTCTGCCTAACGCCCAAAGGCAGAGTCTaGAGTTATGAAGTAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: KSHSRQGFNSRNPSLCLTPKGRV*SYEVAR Trigger: TCTGGCTACTTCATAACTCAAGACTCTGCCTTTGGG...CGTTAGGCAGAGAGAAGGGTTTCTGCTGTTGAAACCTTGCCTGCTATGTGACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095063.11 |
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| CDS-3UTR CAA 90 bp | CCATTTACAGCTGCCACATTTCTTAGGCTGCTTTTCATAACAGTATTTAGTCACCCCAAAGGCAGAGTCTaGAGTTATGAAGTAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: PFTAATFLRLLFITVFSHPKGRV*SYEVAR Trigger: TCTGGCTACTTCATAACTCAAGACTCTGCCTTTGGG...GTGACTAAATACTGTTATGAAAAGCAGCCTAAGAAATGTGGCAGCTGTAAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 |
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| CDS CAA 72 bp | GCGATGTGCTGCTGCTCAGCATGGTCCCGGAAGTCCTaGGTAAGAGAGGGTCTGGAGAGCGAGATGCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: AMCCCSAWSRKS*VREGLESEMLA Trigger: AGCTAGCATCTCGCTCTCCAGACCCTCTCTTACCAAGGACTTCCGGGACCATGCTGAGCAGCAGCACATCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000095063.11 ENSMUST00000107526.8 ENSMUST00000143756.2 |
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