Pregenerated sensors for INCA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057054Ensembl transcript IDs: ENSMUST00000073625.8, ENSMUST00000108541.9, ENSMUST00000108542.8, ENSMUST00000108543.4, ENSMUST00000126114.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCTGCGAGTGTACTGGGCAGTTAGATAGGAACTCAAGTGGGCTGTaGATGCCTACGCTATGGGATGGAGACAACAGAGATAGAAAACAT | + |
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Preference number: 1 (lower is better) Translates to: GCECTGQLDRNSSGL*MPTLWDGDNRDRKH Trigger: ATGTTTTCTATCTCTGTTGTCTCCATCCCATAGCGTAGGCATTCACAGCCCACTTGAGTTCCTATCTAACTGCCCAGTACACTCGCAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| 3UTR CCA 90 bp | TGGTGCTCTTTAATAACAGAACAGAGAGAACACAAGACCAGGTTCTaGCCTAGAGAAAAACCCGGCTGCGAGTGTACTGGGCAGTTAGAT | + |
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Preference number: 1 (lower is better) Translates to: WCSLITEQREHKTRF*PREKPGCECTGQLD Trigger: ATCTAACTGCCCAGTACACTCGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTGTTATTAAAGAGCACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| 3UTR CCA 72 bp | TTAATAACAGAACAGAGAGAACACAAGACCAGGTTCTaGCCTAGAGAAAAACCCGGCTGCGAGTGTACTGGG | + |
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Preference number: 3 (lower is better) Translates to: LITEQREHKTRF*PREKPGCECTG Trigger: CCCAGTACACTCGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTGTTATTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGAGCCCCTCAAGAGGGTaGAGGCTAGGCCGGGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAASPSRG*RLGREQ Trigger: TTGCTCCCGGCCTAGCCTGCACCCTCTTGAGGGGCT...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGGCTGAGGCATTGGTCTaGGATTCTGGGGAGGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAAAEALV*DSGEAG Trigger: GCCTGCCTCCCCAGAATCGCAGACCAATGCCTCAGC...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCAGCCCCTCAAGAGGGTaGAGGCTAGGCCGGGAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESSPSRG*RLGREQ Trigger: TTGCTCCCGGCCTAGCCTGCACCCTCTTGAGGGGCT...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCGCTGAGGCATTGGTCTaGGATTCTGGGGAGGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESAEALV*DSGEAG Trigger: GCCTGCCTCCCCAGAATCGCAGACCAATGCCTCAGC...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGTCAGAGCTGCCCCACTaGGCCCTCTTCAGTTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAASELPH*ALFSSL Trigger: CAATGAACTGAAGAGGGCCCAGTGGGGCAGCTCTGA...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR TCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGAGGGTGAAAATCGGCTaGCCACTCTGGAACACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAARVKIG*PLWNTW Trigger: CCAAGTGTTCCAGAGTGGTCAGCCGATTTTCACCCT...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGTGCTCTAACTCGGGCTaGAATGCTTCCAGGTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAACSNSG*NASRSL Trigger: AAGGGACCTGGAAGCATTCCAGCCCGAGTTAGAGCA...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCGCCGGGAGCAATCAGTaGCCCTCAGAATTGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESAGSNQ*PSELVE Trigger: TTCCACCAATTCTGAGGGCCACTGATTGCTCCCGGC...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCTCAGAGCTGCCCCACTaGGCCCTCTTCAGTTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESSELPH*ALFSSL Trigger: CAATGAACTGAAGAGGGCCCAGTGGGGCAGCTCTGA...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGGCCCTCTTCAAGTGCTaGAAGTTCAGGTGTAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAAALFKC*KFRCSI Trigger: GATGCTACACCTGAACTTCCAGCACTTGAAGAGGGC...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR TCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCAGGGTGAAAATCGGCTaGCCACTCTGGAACACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESRVKIG*PLWNTW Trigger: CCAAGTGTTCCAGAGTGGTCAGCCGATTTTCACCCT...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGCTTCCAGGTCCCTTCTaGATTCTTTCCAAATGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAALPGPF*ILSKCS Trigger: GCTGCATTTGGAAAGAATGCAGAAGGGACCTGGAAG...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGTTTCTGTGGATAGGTTaGCCTCTCTTCTTCCACGTC | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAAFLWIG*PLFFHV Trigger: GACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAA...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGCCACTCTGGAACACTTaGCAAAAGGAAGGATGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAAPLWNT*QKEGCC Trigger: ACAGCATCCTTCCTTTTGCCAAGTGTTCCAGAGTGG...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCTGCTCTAACTCGGGCTaGAATGCTTCCAGGTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESCSNSG*NASRSL Trigger: AAGGGACCTGGAAGCATTCCAGCCCGAGTTAGAGCA...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGAGTGGCCCTCAGAATTaGTGGAATGTACTGTTCTAC | + |
|
Preference number: 4 (lower is better) Translates to: QNRENTRPGSGLEKNPAASGPQN*WNVLFY Trigger: GTAGAACAGTACATTCCACCAATTCTGAGGGCCACT...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCGCCCTCTTCAAGTGCTaGAAGTTCAGGTGTAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESALFKC*KFRCSI Trigger: GATGCTACACCTGAACTTCCAGCACTTGAAGAGGGC...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR GCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCTTTCTGTGGATAGGTTaGCCTCTCTTCTTCCACGTC | + |
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Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESFLWIG*PLFFHV Trigger: GACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAA...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCCCACTCTGGAACACTTaGCAAAAGGAAGGATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESPLWNT*QKEGCC Trigger: ACAGCATCCTTCCTTTTGCCAAGTGTTCCAGAGTGG...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CCA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCAGTGGCCCTCAGAATTaGTGGAATGTACTGTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: METTEIENIRSEASTRESSGPQN*WNVLFY Trigger: GTAGAACAGTACATTCCACCAATTCTGAGGGCCACT...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS GCA 90 bp | TTTCTTCTCCAAAGCTTCTCAGGAGGAGGGAGCCCCTCAAGAGGGTaGAGGCTAGGCCGGGAGCAATCAGTGGCCCTCAGAATTGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: FLLQSFSGGGSPSRG*RLGREQSVALRIGG Trigger: TCCACCAATTCTGAGGGCCACTGATTGCTCCCGGCCTAGCCTGCACCCTCTTGAGGGGCTCCCTCCTCCTGAGAAGCTTTGGAGAAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS TCA 90 bp | CGGCTGAGGCATTGGTCTGCGATTCTGGGGAGGCAGGCTGCAGGGTaGAAATCGGCTGACCACTCTGGAACACTTGGCAAAAGGAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: RLRHWSAILGRQAAG*KSADHSGTLGKRKD Trigger: ATCCTTCCTTTTGCCAAGTGTTCCAGAGTGGTCAGCCGATTTTCACCCTGCAGCCTGCCTCCCCAGAATCGCAGACCAATGCCTCAGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGGCCCTCTTCAGTTCATaGATGATTCCCTGGCGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QNRENTRPGSGLEKNPAAALFSS*MIPWRL Trigger: AAGGCGCCAGGGAATCATCAATGAACTGAAGAGGGC...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CCA 90 bp | AAGAGGGTGCAGGCTAGGCCGGGAGCAATCAGTGGCCCTCAGAATTaGTGGAATGTACTGTTCTACCATCCAATTGGAGCTAGACCTTTG | + |
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Preference number: 5 (lower is better) Translates to: KRVQARPGAISGPQN*WNVLFYHPIGARPL Trigger: CAAAGGTCTAGCTCCAATTGGATGGTAGAACAGTACATTCCACCAATTCTGAGGGCCACTGATTGCTCCCGGCCTAGCCTGCACCCTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGACCACTCTGGAACACTaGGCAAAAGGAAGGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: QNRENTRPGSGLEKNPAATTLEH*AKGRML Trigger: CAGCATCCTTCCTTTTGCCAAGTGTTCCAGAGTGGT...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGCTTTCTGTGGATAGGTaGCCCTCTCTTCTTCCACGT | + |
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Preference number: 5 (lower is better) Translates to: QNRENTRPGSGLEKNPAALSVDR*PSLLPR Trigger: ACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAAG...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS TCA 90 bp | GGCCTACAGGAGTCCAGGGAGTCCAAAGCAGCTGATCTCTGGGAGTaGCAGAATAAGTCTCTTTCTGTGGATAGGTTGCCCTCTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: GLQESRESKAADLWE*QNKSLSVDRLPSLL Trigger: AAGAAGAGAGGGCAACCTATCCACAGAAAGAGACTTATTCTGTCACTCCCAGAGATCAGCTGCTTTGGACTCCCTGGACTCCTGTAGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | CAGAACAGAGAGAACACAAGACCAGGTTCTGGCCTAGAGAAAAACCCGGCTGCGCAGTGGCCCTCAGAATaGGTGGAATGTACTGTTCTA | + |
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Preference number: 5 (lower is better) Translates to: QNRENTRPGSGLEKNPAAQWPSE*VECTVL Trigger: TAGAACAGTACATTCCACCAATTCTGAGGGCCACTG...CGCAGCCGGGTTTTTCTCTAGGCCAGAACCTGGTCTTGTGTTCTCTCTGTTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCGCCCTCTTCAGTTCATaGATGATTCCCTGGCGCCTT | + |
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Preference number: 5 (lower is better) Translates to: METTEIENIRSEASTRESALFSS*MIPWRL Trigger: AAGGCGCCAGGGAATCATCAATGAACTGAAGAGGGC...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCACCACTCTGGAACACTaGGCAAAAGGAAGGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: METTEIENIRSEASTRESTTLEH*AKGRML Trigger: CAGCATCCTTCCTTTTGCCAAGTGTTCCAGAGTGGT...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS-3UTR CAA 90 bp | ATGGAGACAACAGAGATAGAAAACATCCGCTCTGAAGCCAGCACTAGGGAGTCCCTTTCTGTGGATAGGTaGCCCTCTCTTCTTCCACGT | + |
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Preference number: 5 (lower is better) Translates to: METTEIENIRSEASTRESLSVDR*PSLLPR Trigger: ACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAAG...GGACTCCCTAGTGCTGGCTTCAGAGCGGATGTTTTCTATCTCTGTTGTCTCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CCA 90 bp | CCAAAGCAGCTGATCTCTGGGAGTGACAGAATAAGTCTCTTTCTGTaGATAGGTTGCCCTCTCTTCTTCCACGTCAAAGTATTTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: PKQLISGSDRISLFL*IGCPLFFHVKVFCS Trigger: ACTACAAAATACTTTGACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAAGAGACTTATTCTGTCACTCCCAGAGATCAGCTGCTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS GCA 72 bp | CAAAGCTTCTCAGGAGGAGGGAGCCCCTCAAGAGGGTaGAGGCTAGGCCGGGAGCAATCAGTGGCCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: QSFSGGGSPSRG*RLGREQSVALR Trigger: TCTGAGGGCCACTGATTGCTCCCGGCCTAGCCTGCACCCTCTTGAGGGGCTCCCTCCTCCTGAGAAGCTTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CAA 72 bp | GATTCTCCCAGAAGGCATCTCCATACGGCTGAGGCATaGGTCTGCGATTCTGGGGAGGCAGGCTGCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: DSPRRHLHTAEA*VCDSGEAGCRV Trigger: CACCCTGCAGCCTGCCTCCCCAGAATCGCAGACCAATGCCTCAGCCGTATGGAGATGCCTTCTGGGAGAATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS GCA 72 bp | CCCAGAAGGCATCTCCATACGGCTGAGGCATTGGTCTaGGATTCTGGGGAGGCAGGCTGCAGGGTGAAAATC | + |
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Preference number: 6 (lower is better) Translates to: PRRHLHTAEALV*DSGEAGCRVKI Trigger: GATTTTCACCCTGCAGCCTGCCTCCCCAGAATCGCAGACCAATGCCTCAGCCGTATGGAGATGCCTTCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS TCA 72 bp | CATTGGTCTGCGATTCTGGGGAGGCAGGCTGCAGGGTaGAAATCGGCTGACCACTCTGGAACACTTGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: HWSAILGRQAAG*KSADHSGTLGK Trigger: TTTGCCAAGTGTTCCAGAGTGGTCAGCCGATTTTCACCCTGCAGCCTGCCTCCCCAGAATCGCAGACCAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000126114.9 |
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| CDS CCA 72 bp | CAGGCTAGGCCGGGAGCAATCAGTGGCCCTCAGAATTaGTGGAATGTACTGTTCTACCATCCAATTGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: QARPGAISGPQN*WNVLFYHPIGA Trigger: AGCTCCAATTGGATGGTAGAACAGTACATTCCACCAATTCTGAGGGCCACTGATTGCTCCCGGCCTAGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS TCA 72 bp | GAGTCCAGGGAGTCCAAAGCAGCTGATCTCTGGGAGTaGCAGAATAAGTCTCTTTCTGTGGATAGGTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: ESRESKAADLWE*QNKSLSVDRLP Trigger: GGGCAACCTATCCACAGAAAGAGACTTATTCTGTCACTCCCAGAGATCAGCTGCTTTGGACTCCCTGGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CAA 90 bp | TCAGTGGCCCTCAGAATTGGTGGAATGTACTGTTCTACCATCCAATaGGAGCTAGACCTTTGGCTAAGATTCTCCCAGAAGGCATCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SVALRIGGMYCSTIQ*ELDLWLRFSQKASP Trigger: TGGAGATGCCTTCTGGGAGAATCTTAGCCAAAGGTCTAGCTCCAATTGGATGGTAGAACAGTACATTCCACCAATTCTGAGGGCCACTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CAA 90 bp | AATTGGTGGAATGTACTGTTCTACCATCCAATTGGAGCTAGACCTTaGGCTAAGATTCTCCCAGAAGGCATCTCCATACGGCTGAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: NWWNVLFYHPIGARP*AKILPEGISIRLRH Trigger: ATGCCTCAGCCGTATGGAGATGCCTTCTGGGAGAATCTTAGCCAAAGGTCTAGCTCCAATTGGATGGTAGAACAGTACATTCCACCAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CCA 72 bp | CTGATCTCTGGGAGTGACAGAATAAGTCTCTTTCTGTaGATAGGTTGCCCTCTCTTCTTCCACGTCAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: LISGSDRISLFL*IGCPLFFHVKV Trigger: TACTTTGACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAAGAGACTTATTCTGTCACTCCCAGAGATCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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| CDS CAA 72 bp | CTCAGAATTGGTGGAATGTACTGTTCTACCATCCAATaGGAGCTAGACCTTTGGCTAAGATTCTCCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: LRIGGMYCSTIQ*ELDLWLRFSQK Trigger: CTTCTGGGAGAATCTTAGCCAAAGGTCTAGCTCCAATTGGATGGTAGAACAGTACATTCCACCAATTCTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000073625.8 ENSMUST00000108541.9 ENSMUST00000108542.8 ENSMUST00000108543.4 ENSMUST00000126114.9 |
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