Pregenerated sensors for INAFM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074918Ensembl transcript IDs: ENSMUST00000149978.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR GCA 90 bp | CCGAGTCCCCGGCGAATCGTGGTCCCTTGGCTGAAGATCCGGTTGTaGATTACCGGCTCCCGGGGCAAACTGGCGATCGCTGAGGTGTGT | + |
Preference number: 1 (lower is better) Translates to: PSPRRIVVPWLKIRL*ITGSRGKLAIAEVC Trigger: ACACACCTCAGCGATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGGACTCGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR GCA 90 bp | TCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTaGCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATGGCTT | + |
Preference number: 1 (lower is better) Translates to: SPSPDTLGVSSLLGG*QLSCYFLAQVRTWL Trigger: AAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR TCA 90 bp | TGGTCATGTTCACAGCTAGGGCTGGAGAAAATGTCCCGATTCCAGTaGAGGCTTATAGAGTCAGGAGGCCAGCTGGACCACGAGTGGTCT | + |
Preference number: 1 (lower is better) Translates to: WSCSQLGLEKMSRFQ*RLIESGGQLDHEWS Trigger: AGACCACTCGTGGTCCAGCTGGCCTCCTGACTCTATAAGCCTTCACTGGAATCGGGACATTTTCTCCAGCCCTAGCTGTGAACATGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 90 bp | ATAAGGAATGAGAAAGATGAGCTGCCAGTTCAATCTTCCAAGAGCTaGTCTCTTCACTGGCTAGCCAGGCACACTCCTGAACTTGAATTC | + |
Preference number: 1 (lower is better) Translates to: IRNEKDELPVQSSKS*SLHWLARHTPELEF Trigger: GAATTCAAGTTCAGGAGTGTGCCTGGCTAGCCAGTGAAGAGACCAGCTCTTGGAAGATTGAACTGGCAGCTCATCTTTCTCATTCCTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 90 bp | GGAGGCTGCCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATaGCTTAAATCAAGACTATTGTCCTGTAAACCTGAATCAGAGCTG | + |
Preference number: 1 (lower is better) Translates to: GGCQLSCYFLAQVRT*LKSRLLSCKPESEL Trigger: CAGCTCTGATTCAGGTTTACAGGACAATAGTCTTGATTTAAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 90 bp | CGCGTGTGTGAGACCACCTCTAGAAAATCGTTGGCTGCATTTAAGTaGAAGCTTATAAGGAATGAGAAAGATGAGCTGCCAGTTCAATCT | + |
Preference number: 1 (lower is better) Translates to: RVCETTSRKSLAAFK*KLIRNEKDELPVQS Trigger: AGATTGAACTGGCAGCTCATCTTTCTCATTCCTTATAAGCTTCCACTTAAATGCAGCCAACGATTTTCTAGAGGTGGTCTCACACACGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR TCA 90 bp | CATGGCTTAAATCAAGACTATTGTCCTGTAAACCTGAATCAGAGCTaGCTACAAGGTAGGCCAGAAAAGTGGATAGACAGTTTCAGGACT | + |
Preference number: 1 (lower is better) Translates to: HGLNQDYCPVNLNQS*LQGRPEKWIDSFRT Trigger: AGTCCTGAAACTGTCTATCCACTTTTCTGGCCTACCTTGTAGTCAGCTCTGATTCAGGTTTACAGGACAATAGTCTTGATTTAAGCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR GCA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCCCCCGAGAGTGTGTGTaGGCGTGTGTGAGACCACCT | + |
Preference number: 2 (lower is better) Translates to: RTLQAQTPWVLAACWEAAPRECV*ACVRPP Trigger: AGGTGGTCTCACACACGCGCACACACACTCTCGGGG...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CCA 90 bp | TTGCCATCGCCCCTGGCATGGATCCAGAGACTCAGGCTACAACAGGAAGCCACTCCCCAGTTCCCCTTATaGCTCAGGGCCCTGGCGCAG | + |
Preference number: 2 (lower is better) Translates to: LPSPLAWIQRLRLQQEATPQFPL*LRALAQ Trigger: CTGCGCCAGGGCCCTGAGCCATAAGGGGAACTGGGG...AGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CCA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCCCATCGCCCCTGGCATaGATCCAGAGACTCAGGCTA | + |
Preference number: 2 (lower is better) Translates to: RTLQAQTPWVLAACWEAAPSPLA*IQRLRL Trigger: TAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGG...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CCA 90 bp | CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGTATGGCTCAGGGCCCTaGCGCAGCACGGTGCTGGGA | + |
Preference number: 2 (lower is better) Translates to: PTLPKQSLLLRFFHGHGRYGSGP*RSTVLG Trigger: TCCCAGCACCGTGCTGCGCCAGGGCCCTGAGCCATA...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CCA 90 bp | CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGGCAAATAGCCCTTGCTaGACCCCACCATTCAGTAGC | + |
Preference number: 2 (lower is better) Translates to: PTLPKQSLLLRFFHGHGRANSPC*TPPFSS Trigger: GCTACTGAATGGTGGGGTCCAGCAAGGGCTATTTGC...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR TCA 90 bp | GGCTGCCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATGGCTTAAATCATCGTGGTCCCTTGGCTaGAGATCCGGTTGTGCATTA | + |
Preference number: 2 (lower is better) Translates to: GCQLSCYFLAQVRTWLKSSWSLG*RSGCAL Trigger: TAATGCACAACCGGATCTTCAGCCAAGGGACCACGA...TGATTTAAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR GCA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCATGATTATACTCTTGTaGAAGAACGTCAGGAACTTA | + |
Preference number: 2 (lower is better) Translates to: RTLQAQTPWVLAACWEAAMIILL*KNVRNL Trigger: TAAGTTCCTGACGTTCTTGCACAAGAGTATAATCAT...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 90 bp | ACAGGGATCTATAAATTAAACGCATGTCTGGCCACTGCAACTAGGTaGACGTACCTGAGCTCCGCTACTTTTGGTGCTCTCTTCTTTGGG | + |
Preference number: 2 (lower is better) Translates to: TGIYKLNACLATATR*TYLSSATFGALFFG Trigger: CCCAAAGAAGAGAGCACCAAAAGTAGCGGAGCTCAGGTACGTCAACCTAGTTGCAGTGGCCAGACATGCGTTTAATTTATAGATCCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | AGATCCGGTTGTGCATTACCGGCTCCCGGGGCAAACTaGCGATCGCTGAGGTGTGTGGGGGCGTACGCTCGC | + |
Preference number: 3 (lower is better) Translates to: RSGCALPAPGAN*RSLRCVGAYAR Trigger: GCGAGCGTACGCCCCCACACACCTCAGCGATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR GCA 72 bp | CGGCGAATCGTGGTCCCTTGGCTGAAGATCCGGTTGTaGATTACCGGCTCCCGGGGCAAACTGGCGATCGCT | + |
Preference number: 3 (lower is better) Translates to: RRIVVPWLKIRL*ITGSRGKLAIA Trigger: AGCGATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | GATCAAACCCCGAGTCCCCGGCGAATCGTGGTCCCTTaGCTGAAGATCCGGTTGTGCATTACCGGCTCCCGG | + |
Preference number: 3 (lower is better) Translates to: DQTPSPRRIVVP*LKIRLCITGSR Trigger: CCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGGACTCGGGGTTTGATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CAA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCGCGAATCGTGGTCCCTaGGCTGAAGATCCGGTTGTG | + |
Preference number: 3 (lower is better) Translates to: RTLQAQTPWVLAACWEAAANRGP*AEDPVV Trigger: CACAACCGGATCTTCAGCCAAGGGACCACGATTCGC...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | ACAGTCCATAAAGCAGGGTCAGGAGGGGAAGAGGAGTaGACTCCCAGACACTCTCCCACGAGTCCAGAGGGT | + |
Preference number: 3 (lower is better) Translates to: TVHKAGSGGEEE*TPRHSPTSPEG Trigger: ACCCTCTGGACTCGTGGGAGAGTGTCTGGGAGTCCACTCCTCTTCCCCTCCTGACCCTGCTTTATGGACTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | CTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTaGGAGGCTGCCAGCTTAGTTGCTATTTTCTTGCCC | + |
Preference number: 3 (lower is better) Translates to: LQAQTPWVLAAC*EAASLVAIFLP Trigger: GGGCAAGAAAATAGCAACTAAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CAA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCGGTTTTGCAACTGATTaGGTTCTAACGGCAAGCTGC | + |
Preference number: 3 (lower is better) Translates to: RTLQAQTPWVLAACWEAAGFATD*VLTASC Trigger: GCAGCTTGCCGTTAGAACCAAATCAGTTGCAAAACC...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | CAGCAGCTCTACTCTTTCTTGCCATCGCCCCTGGCATaGATCCAGAGACTCAGGCTACAACAGGAAGCCACT | + |
Preference number: 3 (lower is better) Translates to: QQLYSFLPSPLA*IQRLRLQQEAT Trigger: AGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAAGAAAGAGTAGAGCTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR TCA 72 bp | TCACAGCTAGGGCTGGAGAAAATGTCCCGATTCCAGTaGAGGCTTATAGAGTCAGGAGGCCAGCTGGACCAC | + |
Preference number: 3 (lower is better) Translates to: SQLGLEKMSRFQ*RLIESGGQLDH Trigger: GTGGTCCAGCTGGCCTCCTGACTCTATAAGCCTTCACTGGAATCGGGACATTTTCTCCAGCCCTAGCTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR GCA 72 bp | ACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTaGTGGGAGGCTGCCAGCTTAGTTGCTATTTTCTTG | + |
Preference number: 3 (lower is better) Translates to: TLQAQTPWVLAA*WEAASLVAIFL Trigger: CAAGAAAATAGCAACTAAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | AAACACAGCAGCTCTACTCTTTCTTGCCATCGCCCCTaGCATGGATCCAGAGACTCAGGCTACAACAGGAAG | + |
Preference number: 3 (lower is better) Translates to: KHSSSTLSCHRP*HGSRDSGYNRK Trigger: CTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAAGAAAGAGTAGAGCTGCTGTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CAA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCAGAATGATTATACTCTaGTGCAAGAACGTCAGGAAC | + |
Preference number: 3 (lower is better) Translates to: RTLQAQTPWVLAACWEAARMIIL*CKNVRN Trigger: GTTCCTGACGTTCTTGCACAAGAGTATAATCATTCT...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | GAGAAAGATGAGCTGCCAGTTCAATCTTCCAAGAGCTaGTCTCTTCACTGGCTAGCCAGGCACACTCCTGAA | + |
Preference number: 3 (lower is better) Translates to: EKDELPVQSSKS*SLHWLARHTPE Trigger: TTCAGGAGTGTGCCTGGCTAGCCAGTGAAGAGACCAGCTCTTGGAAGATTGAACTGGCAGCTCATCTTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR-3UTR CAA 90 bp | GGCTGCCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATGGCTTAAATCACCTAAACAGTCTCTATaGCTAAGGTTTTTCCACGGC | + |
Preference number: 3 (lower is better) Translates to: GCQLSCYFLAQVRTWLKSPKQSL*LRFFHG Trigger: GCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGG...TGATTTAAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR TCA 72 bp | TTGCTCTTCCTAAAGGAATTCTGTGAGGGAAGGGACTaGTCTAAACACAGCAGCTCTACTCTTTCTTGCCAT | + |
Preference number: 3 (lower is better) Translates to: LLFLKEFCEGRD*SKHSSSTLSCH Trigger: ATGGCAAGAAAGAGTAGAGCTGCTGTGTTTAGATCAGTCCCTTCCCTCACAGAATTCCTTTAGGAAGAGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR TCA 72 bp | ATACTCTTGTGCAAGAACGTCAGGAACTTATCTTTCTaGAACAGGAAGGGAACAGGTGAAAGAGTGGGTGAT | + |
Preference number: 3 (lower is better) Translates to: ILLCKNVRNLSF*NRKGTGERVGD Trigger: ATCACCCACTCTTTCACCTGTTCCCTTCCTGTTTCAGAAAGATAAGTTCCTGACGTTCTTGCACAAGAGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CCA 72 bp | GAGACCACCTCTAGAAAATCGTTGGCTGCATTTAAGTaGAAGCTTATAAGGAATGAGAAAGATGAGCTGCCA | + |
Preference number: 3 (lower is better) Translates to: ETTSRKSLAAFK*KLIRNEKDELP Trigger: TGGCAGCTCATCTTTCTCATTCCTTATAAGCTTCCACTTAAATGCAGCCAACGATTTTCTAGAGGTGGTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR TCA 72 bp | AATCAAGACTATTGTCCTGTAAACCTGAATCAGAGCTaGCTACAAGGTAGGCCAGAAAAGTGGATAGACAGT | + |
Preference number: 3 (lower is better) Translates to: NQDYCPVNLNQS*LQGRPEKWIDS Trigger: ACTGTCTATCCACTTTTCTGGCCTACCTTGTAGTCAGCTCTGATTCAGGTTTACAGGACAATAGTCTTGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCTGTCCCCGGTGTAGGTaGCCGGCTTGCCCCGCTCGG | + |
Preference number: 4 (lower is better) Translates to: RTLQAQTPWVLAACWEAACPRCR*PACPAR Trigger: CCGAGCGGGGCAAGCCGGCCACCTACACCGGGGACA...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | TTGCCATCGCCCCTGGCATGGATCCAGAGACTCAGGCTACAACAGGAAGCCACTTGGTGTTGGAGCCGCTaGGGGGCGGGCCGACGGCTC | + |
Preference number: 4 (lower is better) Translates to: LPSPLAWIQRLRLQQEATWCWSR*GAGRRL Trigger: GAGCCGTCGGCCCGCCCCCCAGCGGCTCCAACACCA...AGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 72 bp | CCCCGGCGAATCGTGGTCCCTTGGCTGAAGATCCGGTaGTGCATTACCGGCTCCCGGGGCAAACTGGCGATC | + |
Preference number: 4 (lower is better) Translates to: PRRIVVPWLKIR*CITGSRGKLAI Trigger: GATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | TTATGGCTCAGGGCCCTGGCGCAGCACGGTGCTGGGAAGATCAAACCCCGAGTCAGACGGCCAGTACGATaGCGGCCAGCGACACGGAGA | + |
Preference number: 4 (lower is better) Translates to: LWLRALAQHGAGKIKPRVRRPVR*RPATRR Trigger: TCTCCGTGTCGCTGGCCGCCATCGTACTGGCCGTCT...GACTCGGGGTTTGATCTTCCCAGCACCGTGCTGCGCCAGGGCCCTGAGCCATAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR TCA 90 bp | CTTATGGCTCAGGGCCCTGGCGCAGCACGGTGCTGGGAAGATCAAACCCCGAGTCCACCGGCTGCCAGATaGGACTGTAGTAGACGGCCA | + |
Preference number: 4 (lower is better) Translates to: LMAQGPGAARCWEDQTPSPPAAR*DCSRRP Trigger: TGGCCGTCTACTACAGTCTCATCTGGCAGCCGGTGG...ACTCGGGGTTTGATCTTCCCAGCACCGTGCTGCGCCAGGGCCCTGAGCCATAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | AGCCGGTCCTGCTGCAAAGTCCTGCTTGGGGGCTTAGGGGACGATGATTCCCGACGTAGGCGAACACCGTaGCTAGCCGGACCCACTTCT | + |
Preference number: 4 (lower is better) Translates to: SRSCCKVLLGGLGDDDSRRRRTP*LAGPTS Trigger: AGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACG...TCGGGAATCATCGTCCCCTAAGCCCCCAAGCAGGACTTTGCAGCAGGACCGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | TGGATCCAGAGACTCAGGCTACAACAGGAAGCCACTTTGGTGGGAGCACTAGGATCCCAGACGGGCCGGTaGTGTTGGAGCCGCTGGGGG | + |
Preference number: 4 (lower is better) Translates to: WIQRLRLQQEATLVGALGSQTGR*CWSRWG Trigger: CCCCCAGCGGCTCCAACACCACCGGCCCGTCTGGGA...TCCTAGTGCTCCCACCAAAGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 72 bp | AGATCAAACCCCGAGTCCCCGGCGAATCGTGGTCCCTaGGCTGAAGATCCGGTTGTGCATTACCGGCTCCCG | + |
Preference number: 4 (lower is better) Translates to: RSNPESPANRGP*AEDPVVHYRLP Trigger: CGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGGACTCGGGGTTTGATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 72 bp | TCATCAGCTGTGAAGAACTCTCCAAGCCCAGACACCTaGGGTGTTAGCAGCCTGCTGGGAGGCTGCCAGCTT | + |
Preference number: 4 (lower is better) Translates to: SSAVKNSPSPDT*GVSSLLGGCQL Trigger: AAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCTTCACAGCTGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGGGACCCACTTCTTGTTaGTCTTGGCCGCCATCTTCG | + |
Preference number: 4 (lower is better) Translates to: PTLPKQSLLLRFFHGHGRGPTSC*SWPPSS Trigger: CGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCC...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CCA 90 bp | CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGACTTCTTGTTGGTCTTaGCCGCCATCTTCGCCTTCT | + |
Preference number: 4 (lower is better) Translates to: PTLPKQSLLLRFFHGHGRTSCWS*PPSSPS Trigger: AGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGT...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 72 bp | TATAAATTAAACGCATGTCTGGCCACTGCAACTAGGTaGACGTACCTGAGCTCCGCTACTTTTGGTGCTCTC | + |
Preference number: 4 (lower is better) Translates to: YKLNACLATATR*TYLSSATFGAL Trigger: GAGAGCACCAAAAGTAGCGGAGCTCAGGTACGTCAACCTAGTTGCAGTGGCCAGACATGCGTTTAATTTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 72 bp | TATAGAGTCAGGAGGCCAGCTGGACCACGAGTGGTCTaGCTGAACTCTTTGATCCAAAGTGGATTTAAACAG | + |
Preference number: 4 (lower is better) Translates to: YRVRRPAGPRVV*LNSLIQSGFKQ Trigger: CTGTTTAAATCCACTTTGGATCAAAGAGTTCAGCAAGACCACTCGTGGTCCAGCTGGCCTCCTGACTCTATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
3UTR CAA 72 bp | TCAGAACCACATCAAAGCTCTGGTTTTGCAACTGATTaGGTTCTAACGGCAAGCTGCTGTGTTAGGCTCAAA | + |
Preference number: 4 (lower is better) Translates to: SEPHQSSGFATD*VLTASCCVRLK Trigger: TTTGAGCCTAACACAGCAGCTTGCCGTTAGAACCAAATCAGTTGCAAAACCAGAGCTTTGATGTGGTTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CAA 90 bp | CGGCGGGCTCCGGAGCCGGTCCTGCTGCAAAGTCCTGCTTGGGGGCTTAGGGGACGGACCCACTTCTTGTaGGTCTTGGCCGCCATCTTC | + |
Preference number: 5 (lower is better) Translates to: RRAPEPVLLQSPAWGLRGRTHFL*VLAAIF Trigger: GAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCG...TCCCCTAAGCCCCCAAGCAGGACTTTGCAGCAGGACCGGCTCCGGAGCCCGCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 90 bp | CGTAGGCGAACACCGTGGCTAGCCGGACCCACTTCTTGTTGGTCTTaGCCGCCATCTTCGCCTTCTTGTCCCCGGTGTAGGTGGCCGGCT | + |
Preference number: 5 (lower is better) Translates to: RRRTPWLAGPTSCWS*PPSSPSCPRCRWPA Trigger: AGCCGGCCACCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 90 bp | GTACGATGGCGGCCAGCGACACGGAGAGCACGTAGGCGAACACCGTaGCTAGCCGGACCCACTTCTTGTTGGTCTTGGCCGCCATCTTCG | + |
Preference number: 5 (lower is better) Translates to: VRWRPATRRARRRTP*LAGPTSCWSWPPSS Trigger: CGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACGTGCTCTCCGTGTCGCTGGCCGCCATCGTAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 90 bp | AGAGCACGTAGGCGAACACCGTGGCTAGCCGGACCCACTTCTTGTTaGTCTTGGCCGCCATCTTCGCCTTCTTGTCCCCGGTGTAGGTGG | + |
Preference number: 5 (lower is better) Translates to: RARRRTPWLAGPTSC*SWPPSSPSCPRCRW Trigger: CCACCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACGTGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CAA 90 bp | AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCCACTTCTTGTTGGTCTaGGCCGCCATCTTCGCCTTC | + |
Preference number: 5 (lower is better) Translates to: RTLQAQTPWVLAACWEAAHFLLV*AAIFAF Trigger: GAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTG...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS-3UTR CAA 90 bp | ACGTACCTGAGCTCCGCTACTTTTGGTGCTCTCTTCTTTGGGAGAGCCTCGGCTAGCCGGACCCACTTCTaGTTGGTCTTGGCCGCCATC | + |
Preference number: 5 (lower is better) Translates to: TYLSSATFGALFFGRASASRTHF*LVLAAI Trigger: GATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCT...AGCCGAGGCTCTCCCAAAGAAGAGAGCACCAAAAGTAGCGGAGCTCAGGTACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 72 bp | GTGCGTCGCGTGGCGCCTCGCGGCGGGACGACCCGGTaGTGTTGGGCCCCGCCGCCACCCCCGAAGTCCCAG | + |
Preference number: 6 (lower is better) Translates to: VRRVAPRGGTTR*CWAPPPPPKSQ Trigger: CTGGGACTTCGGGGGTGGCGGCGGGGCCCAACACCACCGGGTCGTCCCGCCGCGAGGCGCCACGCGACGCAC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CAA 72 bp | TCGCGTGGCGCCTCGCGGCGGGACGACCCGGTGGTGTaGGGCCCCGCCGCCACCCCCGAAGTCCCAGACGGG | + |
Preference number: 6 (lower is better) Translates to: SRGASRRDDPVV*GPAATPEVPDG Trigger: CCCGTCTGGGACTTCGGGGGTGGCGGCGGGGCCCAACACCACCGGGTCGTCCCGCCGCGAGGCGCCACGCGA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS GCA 72 bp | TCTTCGCCTTCTTGTCCCCGGTGTAGGTGGCCGGCTTaGCCCGCTCGGCCGGGGCCGCGTCGCGCTCCTTCA | + |
Preference number: 6 (lower is better) Translates to: SSPSCPRCRWPA*PARPGPRRAPS Trigger: TGAAGGAGCGCGACGCGGCCCCGGCCGAGCGGGGCAAGCCGGCCACCTACACCGGGGACAAGAAGGCGAAGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 72 bp | CGGCCAGCGACACGGAGAGCACGTAGGCGAACACCGTaGCTAGCCGGACCCACTTCTTGTTGGTCTTGGCCG | + |
Preference number: 6 (lower is better) Translates to: RPATRRARRRTP*LAGPTSCWSWP Trigger: CGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACGTGCTCTCCGTGTCGCTGGCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 72 bp | AGGCGAACACCGTGGCTAGCCGGACCCACTTCTTGTTaGTCTTGGCCGCCATCTTCGCCTTCTTGTCCCCGG | + |
Preference number: 6 (lower is better) Translates to: RRTPWLAGPTSC*SWPPSSPSCPR Trigger: CCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |
||
CDS CCA 72 bp | ACACCGTGGCTAGCCGGACCCACTTCTTGTTGGTCTTaGCCGCCATCTTCGCCTTCTTGTCCCCGGTGTAGG | + |
Preference number: 6 (lower is better) Translates to: TPWLAGPTSCWS*PPSSPSCPRCR Trigger: CCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149978.2 |