RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for INAFM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074918

Ensembl transcript IDs: ENSMUST00000149978.2

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCGAGTCCCCGGCGAATCGTGGTCCCTTGGCTGAAGATCCGGTTGTaGATTACCGGCTCCCGGGGCAAACTGGCGATCGCTGAGGTGTGT +
Preference number: 1 (lower is better)
Translates to: PSPRRIVVPWLKIRL*ITGSRGKLAIAEVC
Trigger: ACACACCTCAGCGATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGGACTCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR GCA 90 bp TCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTaGCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATGGCTT +
Preference number: 1 (lower is better)
Translates to: SPSPDTLGVSSLLGG*QLSCYFLAQVRTWL
Trigger: AAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR TCA 90 bp TGGTCATGTTCACAGCTAGGGCTGGAGAAAATGTCCCGATTCCAGTaGAGGCTTATAGAGTCAGGAGGCCAGCTGGACCACGAGTGGTCT +
Preference number: 1 (lower is better)
Translates to: WSCSQLGLEKMSRFQ*RLIESGGQLDHEWS
Trigger: AGACCACTCGTGGTCCAGCTGGCCTCCTGACTCTATAAGCCTTCACTGGAATCGGGACATTTTCTCCAGCCCTAGCTGTGAACATGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 90 bp ATAAGGAATGAGAAAGATGAGCTGCCAGTTCAATCTTCCAAGAGCTaGTCTCTTCACTGGCTAGCCAGGCACACTCCTGAACTTGAATTC +
Preference number: 1 (lower is better)
Translates to: IRNEKDELPVQSSKS*SLHWLARHTPELEF
Trigger: GAATTCAAGTTCAGGAGTGTGCCTGGCTAGCCAGTGAAGAGACCAGCTCTTGGAAGATTGAACTGGCAGCTCATCTTTCTCATTCCTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 90 bp GGAGGCTGCCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATaGCTTAAATCAAGACTATTGTCCTGTAAACCTGAATCAGAGCTG +
Preference number: 1 (lower is better)
Translates to: GGCQLSCYFLAQVRT*LKSRLLSCKPESEL
Trigger: CAGCTCTGATTCAGGTTTACAGGACAATAGTCTTGATTTAAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 90 bp CGCGTGTGTGAGACCACCTCTAGAAAATCGTTGGCTGCATTTAAGTaGAAGCTTATAAGGAATGAGAAAGATGAGCTGCCAGTTCAATCT +
Preference number: 1 (lower is better)
Translates to: RVCETTSRKSLAAFK*KLIRNEKDELPVQS
Trigger: AGATTGAACTGGCAGCTCATCTTTCTCATTCCTTATAAGCTTCCACTTAAATGCAGCCAACGATTTTCTAGAGGTGGTCTCACACACGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR TCA 90 bp CATGGCTTAAATCAAGACTATTGTCCTGTAAACCTGAATCAGAGCTaGCTACAAGGTAGGCCAGAAAAGTGGATAGACAGTTTCAGGACT +
Preference number: 1 (lower is better)
Translates to: HGLNQDYCPVNLNQS*LQGRPEKWIDSFRT
Trigger: AGTCCTGAAACTGTCTATCCACTTTTCTGGCCTACCTTGTAGTCAGCTCTGATTCAGGTTTACAGGACAATAGTCTTGATTTAAGCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR GCA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCCCCCGAGAGTGTGTGTaGGCGTGTGTGAGACCACCT +
Preference number: 2 (lower is better)
Translates to: RTLQAQTPWVLAACWEAAPRECV*ACVRPP
Trigger: AGGTGGTCTCACACACGCGCACACACACTCTCGGGG...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CCA 90 bp TTGCCATCGCCCCTGGCATGGATCCAGAGACTCAGGCTACAACAGGAAGCCACTCCCCAGTTCCCCTTATaGCTCAGGGCCCTGGCGCAG +
Preference number: 2 (lower is better)
Translates to: LPSPLAWIQRLRLQQEATPQFPL*LRALAQ
Trigger: CTGCGCCAGGGCCCTGAGCCATAAGGGGAACTGGGG...AGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CCA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCCCATCGCCCCTGGCATaGATCCAGAGACTCAGGCTA +
Preference number: 2 (lower is better)
Translates to: RTLQAQTPWVLAACWEAAPSPLA*IQRLRL
Trigger: TAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGG...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CCA 90 bp CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGTATGGCTCAGGGCCCTaGCGCAGCACGGTGCTGGGA +
Preference number: 2 (lower is better)
Translates to: PTLPKQSLLLRFFHGHGRYGSGP*RSTVLG
Trigger: TCCCAGCACCGTGCTGCGCCAGGGCCCTGAGCCATA...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CCA 90 bp CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGGCAAATAGCCCTTGCTaGACCCCACCATTCAGTAGC +
Preference number: 2 (lower is better)
Translates to: PTLPKQSLLLRFFHGHGRANSPC*TPPFSS
Trigger: GCTACTGAATGGTGGGGTCCAGCAAGGGCTATTTGC...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR TCA 90 bp GGCTGCCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATGGCTTAAATCATCGTGGTCCCTTGGCTaGAGATCCGGTTGTGCATTA +
Preference number: 2 (lower is better)
Translates to: GCQLSCYFLAQVRTWLKSSWSLG*RSGCAL
Trigger: TAATGCACAACCGGATCTTCAGCCAAGGGACCACGA...TGATTTAAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR GCA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCATGATTATACTCTTGTaGAAGAACGTCAGGAACTTA +
Preference number: 2 (lower is better)
Translates to: RTLQAQTPWVLAACWEAAMIILL*KNVRNL
Trigger: TAAGTTCCTGACGTTCTTGCACAAGAGTATAATCAT...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 90 bp ACAGGGATCTATAAATTAAACGCATGTCTGGCCACTGCAACTAGGTaGACGTACCTGAGCTCCGCTACTTTTGGTGCTCTCTTCTTTGGG +
Preference number: 2 (lower is better)
Translates to: TGIYKLNACLATATR*TYLSSATFGALFFG
Trigger: CCCAAAGAAGAGAGCACCAAAAGTAGCGGAGCTCAGGTACGTCAACCTAGTTGCAGTGGCCAGACATGCGTTTAATTTATAGATCCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp AGATCCGGTTGTGCATTACCGGCTCCCGGGGCAAACTaGCGATCGCTGAGGTGTGTGGGGGCGTACGCTCGC +
Preference number: 3 (lower is better)
Translates to: RSGCALPAPGAN*RSLRCVGAYAR
Trigger: GCGAGCGTACGCCCCCACACACCTCAGCGATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR GCA 72 bp CGGCGAATCGTGGTCCCTTGGCTGAAGATCCGGTTGTaGATTACCGGCTCCCGGGGCAAACTGGCGATCGCT +
Preference number: 3 (lower is better)
Translates to: RRIVVPWLKIRL*ITGSRGKLAIA
Trigger: AGCGATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp GATCAAACCCCGAGTCCCCGGCGAATCGTGGTCCCTTaGCTGAAGATCCGGTTGTGCATTACCGGCTCCCGG +
Preference number: 3 (lower is better)
Translates to: DQTPSPRRIVVP*LKIRLCITGSR
Trigger: CCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGGACTCGGGGTTTGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CAA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCGCGAATCGTGGTCCCTaGGCTGAAGATCCGGTTGTG +
Preference number: 3 (lower is better)
Translates to: RTLQAQTPWVLAACWEAAANRGP*AEDPVV
Trigger: CACAACCGGATCTTCAGCCAAGGGACCACGATTCGC...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp ACAGTCCATAAAGCAGGGTCAGGAGGGGAAGAGGAGTaGACTCCCAGACACTCTCCCACGAGTCCAGAGGGT +
Preference number: 3 (lower is better)
Translates to: TVHKAGSGGEEE*TPRHSPTSPEG
Trigger: ACCCTCTGGACTCGTGGGAGAGTGTCTGGGAGTCCACTCCTCTTCCCCTCCTGACCCTGCTTTATGGACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp CTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTaGGAGGCTGCCAGCTTAGTTGCTATTTTCTTGCCC +
Preference number: 3 (lower is better)
Translates to: LQAQTPWVLAAC*EAASLVAIFLP
Trigger: GGGCAAGAAAATAGCAACTAAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CAA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCGGTTTTGCAACTGATTaGGTTCTAACGGCAAGCTGC +
Preference number: 3 (lower is better)
Translates to: RTLQAQTPWVLAACWEAAGFATD*VLTASC
Trigger: GCAGCTTGCCGTTAGAACCAAATCAGTTGCAAAACC...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp CAGCAGCTCTACTCTTTCTTGCCATCGCCCCTGGCATaGATCCAGAGACTCAGGCTACAACAGGAAGCCACT +
Preference number: 3 (lower is better)
Translates to: QQLYSFLPSPLA*IQRLRLQQEAT
Trigger: AGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAAGAAAGAGTAGAGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR TCA 72 bp TCACAGCTAGGGCTGGAGAAAATGTCCCGATTCCAGTaGAGGCTTATAGAGTCAGGAGGCCAGCTGGACCAC +
Preference number: 3 (lower is better)
Translates to: SQLGLEKMSRFQ*RLIESGGQLDH
Trigger: GTGGTCCAGCTGGCCTCCTGACTCTATAAGCCTTCACTGGAATCGGGACATTTTCTCCAGCCCTAGCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR GCA 72 bp ACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTaGTGGGAGGCTGCCAGCTTAGTTGCTATTTTCTTG +
Preference number: 3 (lower is better)
Translates to: TLQAQTPWVLAA*WEAASLVAIFL
Trigger: CAAGAAAATAGCAACTAAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp AAACACAGCAGCTCTACTCTTTCTTGCCATCGCCCCTaGCATGGATCCAGAGACTCAGGCTACAACAGGAAG +
Preference number: 3 (lower is better)
Translates to: KHSSSTLSCHRP*HGSRDSGYNRK
Trigger: CTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAAGAAAGAGTAGAGCTGCTGTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CAA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCAGAATGATTATACTCTaGTGCAAGAACGTCAGGAAC +
Preference number: 3 (lower is better)
Translates to: RTLQAQTPWVLAACWEAARMIIL*CKNVRN
Trigger: GTTCCTGACGTTCTTGCACAAGAGTATAATCATTCT...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp GAGAAAGATGAGCTGCCAGTTCAATCTTCCAAGAGCTaGTCTCTTCACTGGCTAGCCAGGCACACTCCTGAA +
Preference number: 3 (lower is better)
Translates to: EKDELPVQSSKS*SLHWLARHTPE
Trigger: TTCAGGAGTGTGCCTGGCTAGCCAGTGAAGAGACCAGCTCTTGGAAGATTGAACTGGCAGCTCATCTTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR-3UTR CAA 90 bp GGCTGCCAGCTTAGTTGCTATTTTCTTGCCCAGGTCAGGACATGGCTTAAATCACCTAAACAGTCTCTATaGCTAAGGTTTTTCCACGGC +
Preference number: 3 (lower is better)
Translates to: GCQLSCYFLAQVRTWLKSPKQSL*LRFFHG
Trigger: GCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGG...TGATTTAAGCCATGTCCTGACCTGGGCAAGAAAATAGCAACTAAGCTGGCAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR TCA 72 bp TTGCTCTTCCTAAAGGAATTCTGTGAGGGAAGGGACTaGTCTAAACACAGCAGCTCTACTCTTTCTTGCCAT +
Preference number: 3 (lower is better)
Translates to: LLFLKEFCEGRD*SKHSSSTLSCH
Trigger: ATGGCAAGAAAGAGTAGAGCTGCTGTGTTTAGATCAGTCCCTTCCCTCACAGAATTCCTTTAGGAAGAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR TCA 72 bp ATACTCTTGTGCAAGAACGTCAGGAACTTATCTTTCTaGAACAGGAAGGGAACAGGTGAAAGAGTGGGTGAT +
Preference number: 3 (lower is better)
Translates to: ILLCKNVRNLSF*NRKGTGERVGD
Trigger: ATCACCCACTCTTTCACCTGTTCCCTTCCTGTTTCAGAAAGATAAGTTCCTGACGTTCTTGCACAAGAGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CCA 72 bp GAGACCACCTCTAGAAAATCGTTGGCTGCATTTAAGTaGAAGCTTATAAGGAATGAGAAAGATGAGCTGCCA +
Preference number: 3 (lower is better)
Translates to: ETTSRKSLAAFK*KLIRNEKDELP
Trigger: TGGCAGCTCATCTTTCTCATTCCTTATAAGCTTCCACTTAAATGCAGCCAACGATTTTCTAGAGGTGGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR TCA 72 bp AATCAAGACTATTGTCCTGTAAACCTGAATCAGAGCTaGCTACAAGGTAGGCCAGAAAAGTGGATAGACAGT +
Preference number: 3 (lower is better)
Translates to: NQDYCPVNLNQS*LQGRPEKWIDS
Trigger: ACTGTCTATCCACTTTTCTGGCCTACCTTGTAGTCAGCTCTGATTCAGGTTTACAGGACAATAGTCTTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCTGTCCCCGGTGTAGGTaGCCGGCTTGCCCCGCTCGG +
Preference number: 4 (lower is better)
Translates to: RTLQAQTPWVLAACWEAACPRCR*PACPAR
Trigger: CCGAGCGGGGCAAGCCGGCCACCTACACCGGGGACA...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp TTGCCATCGCCCCTGGCATGGATCCAGAGACTCAGGCTACAACAGGAAGCCACTTGGTGTTGGAGCCGCTaGGGGGCGGGCCGACGGCTC +
Preference number: 4 (lower is better)
Translates to: LPSPLAWIQRLRLQQEATWCWSR*GAGRRL
Trigger: GAGCCGTCGGCCCGCCCCCCAGCGGCTCCAACACCA...AGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCATGCCAGGGGCGATGGCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 72 bp CCCCGGCGAATCGTGGTCCCTTGGCTGAAGATCCGGTaGTGCATTACCGGCTCCCGGGGCAAACTGGCGATC +
Preference number: 4 (lower is better)
Translates to: PRRIVVPWLKIR*CITGSRGKLAI
Trigger: GATCGCCAGTTTGCCCCGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp TTATGGCTCAGGGCCCTGGCGCAGCACGGTGCTGGGAAGATCAAACCCCGAGTCAGACGGCCAGTACGATaGCGGCCAGCGACACGGAGA +
Preference number: 4 (lower is better)
Translates to: LWLRALAQHGAGKIKPRVRRPVR*RPATRR
Trigger: TCTCCGTGTCGCTGGCCGCCATCGTACTGGCCGTCT...GACTCGGGGTTTGATCTTCCCAGCACCGTGCTGCGCCAGGGCCCTGAGCCATAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR TCA 90 bp CTTATGGCTCAGGGCCCTGGCGCAGCACGGTGCTGGGAAGATCAAACCCCGAGTCCACCGGCTGCCAGATaGGACTGTAGTAGACGGCCA +
Preference number: 4 (lower is better)
Translates to: LMAQGPGAARCWEDQTPSPPAAR*DCSRRP
Trigger: TGGCCGTCTACTACAGTCTCATCTGGCAGCCGGTGG...ACTCGGGGTTTGATCTTCCCAGCACCGTGCTGCGCCAGGGCCCTGAGCCATAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp AGCCGGTCCTGCTGCAAAGTCCTGCTTGGGGGCTTAGGGGACGATGATTCCCGACGTAGGCGAACACCGTaGCTAGCCGGACCCACTTCT +
Preference number: 4 (lower is better)
Translates to: SRSCCKVLLGGLGDDDSRRRRTP*LAGPTS
Trigger: AGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACG...TCGGGAATCATCGTCCCCTAAGCCCCCAAGCAGGACTTTGCAGCAGGACCGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp TGGATCCAGAGACTCAGGCTACAACAGGAAGCCACTTTGGTGGGAGCACTAGGATCCCAGACGGGCCGGTaGTGTTGGAGCCGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: WIQRLRLQQEATLVGALGSQTGR*CWSRWG
Trigger: CCCCCAGCGGCTCCAACACCACCGGCCCGTCTGGGA...TCCTAGTGCTCCCACCAAAGTGGCTTCCTGTTGTAGCCTGAGTCTCTGGATCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 72 bp AGATCAAACCCCGAGTCCCCGGCGAATCGTGGTCCCTaGGCTGAAGATCCGGTTGTGCATTACCGGCTCCCG +
Preference number: 4 (lower is better)
Translates to: RSNPESPANRGP*AEDPVVHYRLP
Trigger: CGGGAGCCGGTAATGCACAACCGGATCTTCAGCCAAGGGACCACGATTCGCCGGGGACTCGGGGTTTGATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 72 bp TCATCAGCTGTGAAGAACTCTCCAAGCCCAGACACCTaGGGTGTTAGCAGCCTGCTGGGAGGCTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: SSAVKNSPSPDT*GVSSLLGGCQL
Trigger: AAGCTGGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCTTCACAGCTGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGGGACCCACTTCTTGTTaGTCTTGGCCGCCATCTTCG +
Preference number: 4 (lower is better)
Translates to: PTLPKQSLLLRFFHGHGRGPTSC*SWPPSS
Trigger: CGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCC...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CCA 90 bp CCCACCCTCCCTAAACAGTCTCTATTGCTAAGGTTTTTCCACGGCCATGGTAGGACTTCTTGTTGGTCTTaGCCGCCATCTTCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: PTLPKQSLLLRFFHGHGRTSCWS*PPSSPS
Trigger: AGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGT...CCTACCATGGCCGTGGAAAAACCTTAGCAATAGAGACTGTTTAGGGAGGGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 72 bp TATAAATTAAACGCATGTCTGGCCACTGCAACTAGGTaGACGTACCTGAGCTCCGCTACTTTTGGTGCTCTC +
Preference number: 4 (lower is better)
Translates to: YKLNACLATATR*TYLSSATFGAL
Trigger: GAGAGCACCAAAAGTAGCGGAGCTCAGGTACGTCAACCTAGTTGCAGTGGCCAGACATGCGTTTAATTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 72 bp TATAGAGTCAGGAGGCCAGCTGGACCACGAGTGGTCTaGCTGAACTCTTTGATCCAAAGTGGATTTAAACAG +
Preference number: 4 (lower is better)
Translates to: YRVRRPAGPRVV*LNSLIQSGFKQ
Trigger: CTGTTTAAATCCACTTTGGATCAAAGAGTTCAGCAAGACCACTCGTGGTCCAGCTGGCCTCCTGACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
3UTR CAA 72 bp TCAGAACCACATCAAAGCTCTGGTTTTGCAACTGATTaGGTTCTAACGGCAAGCTGCTGTGTTAGGCTCAAA +
Preference number: 4 (lower is better)
Translates to: SEPHQSSGFATD*VLTASCCVRLK
Trigger: TTTGAGCCTAACACAGCAGCTTGCCGTTAGAACCAAATCAGTTGCAAAACCAGAGCTTTGATGTGGTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CAA 90 bp CGGCGGGCTCCGGAGCCGGTCCTGCTGCAAAGTCCTGCTTGGGGGCTTAGGGGACGGACCCACTTCTTGTaGGTCTTGGCCGCCATCTTC +
Preference number: 5 (lower is better)
Translates to: RRAPEPVLLQSPAWGLRGRTHFL*VLAAIF
Trigger: GAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCG...TCCCCTAAGCCCCCAAGCAGGACTTTGCAGCAGGACCGGCTCCGGAGCCCGCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 90 bp CGTAGGCGAACACCGTGGCTAGCCGGACCCACTTCTTGTTGGTCTTaGCCGCCATCTTCGCCTTCTTGTCCCCGGTGTAGGTGGCCGGCT +
Preference number: 5 (lower is better)
Translates to: RRRTPWLAGPTSCWS*PPSSPSCPRCRWPA
Trigger: AGCCGGCCACCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 90 bp GTACGATGGCGGCCAGCGACACGGAGAGCACGTAGGCGAACACCGTaGCTAGCCGGACCCACTTCTTGTTGGTCTTGGCCGCCATCTTCG +
Preference number: 5 (lower is better)
Translates to: VRWRPATRRARRRTP*LAGPTSCWSWPPSS
Trigger: CGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACGTGCTCTCCGTGTCGCTGGCCGCCATCGTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 90 bp AGAGCACGTAGGCGAACACCGTGGCTAGCCGGACCCACTTCTTGTTaGTCTTGGCCGCCATCTTCGCCTTCTTGTCCCCGGTGTAGGTGG +
Preference number: 5 (lower is better)
Translates to: RARRRTPWLAGPTSC*SWPPSSPSCPRCRW
Trigger: CCACCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACGTGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CAA 90 bp AGAACTCTCCAAGCCCAGACACCTTGGGTGTTAGCAGCCTGCTGGGAGGCTGCCCACTTCTTGTTGGTCTaGGCCGCCATCTTCGCCTTC +
Preference number: 5 (lower is better)
Translates to: RTLQAQTPWVLAACWEAAHFLLV*AAIFAF
Trigger: GAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTG...GGCAGCCTCCCAGCAGGCTGCTAACACCCAAGGTGTCTGGGCTTGGAGAGTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS-3UTR CAA 90 bp ACGTACCTGAGCTCCGCTACTTTTGGTGCTCTCTTCTTTGGGAGAGCCTCGGCTAGCCGGACCCACTTCTaGTTGGTCTTGGCCGCCATC +
Preference number: 5 (lower is better)
Translates to: TYLSSATFGALFFGRASASRTHF*LVLAAI
Trigger: GATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCT...AGCCGAGGCTCTCCCAAAGAAGAGAGCACCAAAAGTAGCGGAGCTCAGGTACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 72 bp GTGCGTCGCGTGGCGCCTCGCGGCGGGACGACCCGGTaGTGTTGGGCCCCGCCGCCACCCCCGAAGTCCCAG +
Preference number: 6 (lower is better)
Translates to: VRRVAPRGGTTR*CWAPPPPPKSQ
Trigger: CTGGGACTTCGGGGGTGGCGGCGGGGCCCAACACCACCGGGTCGTCCCGCCGCGAGGCGCCACGCGACGCAC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CAA 72 bp TCGCGTGGCGCCTCGCGGCGGGACGACCCGGTGGTGTaGGGCCCCGCCGCCACCCCCGAAGTCCCAGACGGG +
Preference number: 6 (lower is better)
Translates to: SRGASRRDDPVV*GPAATPEVPDG
Trigger: CCCGTCTGGGACTTCGGGGGTGGCGGCGGGGCCCAACACCACCGGGTCGTCCCGCCGCGAGGCGCCACGCGA
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS GCA 72 bp TCTTCGCCTTCTTGTCCCCGGTGTAGGTGGCCGGCTTaGCCCGCTCGGCCGGGGCCGCGTCGCGCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: SSPSCPRCRWPA*PARPGPRRAPS
Trigger: TGAAGGAGCGCGACGCGGCCCCGGCCGAGCGGGGCAAGCCGGCCACCTACACCGGGGACAAGAAGGCGAAGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 72 bp CGGCCAGCGACACGGAGAGCACGTAGGCGAACACCGTaGCTAGCCGGACCCACTTCTTGTTGGTCTTGGCCG +
Preference number: 6 (lower is better)
Translates to: RPATRRARRRTP*LAGPTSCWSWP
Trigger: CGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCTACGTGCTCTCCGTGTCGCTGGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 72 bp AGGCGAACACCGTGGCTAGCCGGACCCACTTCTTGTTaGTCTTGGCCGCCATCTTCGCCTTCTTGTCCCCGG +
Preference number: 6 (lower is better)
Translates to: RRTPWLAGPTSC*SWPPSSPSCPR
Trigger: CCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGTTCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2
CDS CCA 72 bp ACACCGTGGCTAGCCGGACCCACTTCTTGTTGGTCTTaGCCGCCATCTTCGCCTTCTTGTCCCCGGTGTAGG +
Preference number: 6 (lower is better)
Translates to: TPWLAGPTSCWS*PPSSPSCPRCR
Trigger: CCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAACAAGAAGTGGGTCCGGCTAGCCACGGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149978.2