RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for INAFM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091811

Ensembl transcript IDs: ENSMUST00000169612.3

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGAGTTTATTGCCGATGAGCGCTGAGTCCCGGGAAGGAGCAAGGTaGAATAAGGTCGGGCAGGATCAGGACCGCGGCAAGGAGAGAGGC +
Preference number: 1 (lower is better)
Translates to: WSLLPMSAESREGAR*NKVGQDQDRGKERG
Trigger: GCCTCTCTCCTTGCCGCGGTCCTGATCCTGCCCGACCTTATTCCACCTTGCTCCTTCCCGGGACTCAGCGCTCATCGGCAATAAACTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CCA 90 bp AGCCTAGGGGGAAGGCAGGCCATAAAGGAAACCCCTTCTTGCAGCTaGCCAGCAGAGTATATCCCAGGCCTGCCTACGGCCAAGCCACAG +
Preference number: 1 (lower is better)
Translates to: SLGGRQAIKETPSCS*PAEYIPGLPTAKPQ
Trigger: CTGTGGCTTGGCCGTAGGCAGGCCTGGGATATACTCTGCTGGCCAGCTGCAAGAAGGGGTTTCCTTTATGGCCTGCCTTCCCCCTAGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR-3UTR GCA 90 bp TACATCATCCCGTGGGGGATGCTGGTAGGACAGAAGGGAACCAGCAGGACAGGTGCAAACTATACCAACTaGAGTTTCCAGCACGCACCA +
Preference number: 2 (lower is better)
Translates to: YIIPWGMLVGQKGTSRTGANYTN*SFQHAP
Trigger: TGGTGCGTGCTGGAAACTGCAGTTGGTATAGTTTGC...ACCTGTCCTGCTGGTTCCCTTCTGTCCTACCAGCATCCCCCACGGGATGATGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR-3UTR GCA 90 bp GTTCAGCTATATGCTCCACACTTCCAAAGCAGCAAATGTCACCACCCAAACCAGCTCTACCCCTGCCATTaGAAACTATACCAACTGCAG +
Preference number: 2 (lower is better)
Translates to: VQLYAPHFQSSKCHHPNQLYPCH*KLYQLQ
Trigger: CTGCAGTTGGTATAGTTTGCAATGGCAGGGGTAGAG...CTGGTTTGGGTGGTGACATTTGCTGCTTTGGAAGTGTGGAGCATATAGCTGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CAA 90 bp CAATGTGTTGTCTTCCTTTTACAAGACCAGAGAGATTTAAGTACATaGCTGTACATCATCCCGTGGGGGATGCTGGTAGGACAGAAGGGA +
Preference number: 2 (lower is better)
Translates to: QCVVFLLQDQRDLST*LYIIPWGMLVGQKG
Trigger: TCCCTTCTGTCCTACCAGCATCCCCCACGGGATGATGTACAGCAATGTACTTAAATCTCTCTGGTCTTGTAAAAGGAAGACAACACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR-3UTR TCA 90 bp CAGACCAGTTTTGGTTTGGTTCAGCTATATGCTCCACACTTCCAAAGCAGCAAACCCAAAAATTACATGTaGGCAATGAGAGAGGAAAGC +
Preference number: 2 (lower is better)
Translates to: QTSFGLVQLYAPHFQSSKPKNYM*AMREES
Trigger: GCTTTCCTCTCTCATTGCTCACATGTAATTTTTGGG...TTTGCTGCTTTGGAAGTGTGGAGCATATAGCTGAACCAAACCAAAACTGGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR-3UTR GCA 90 bp CCACAGTCATGGGTAAGGGAAAATGGACTCAATCGCATGACTTCTTTATCAGAATTTGGTTCAGCTATATaGTCCACACTTCCAAAGCAG +
Preference number: 2 (lower is better)
Translates to: PQSWVRENGLNRMTSLSEFGSAI*STLPKQ
Trigger: CTGCTTTGGAAGTGTGGAGCATATAGCTGAACCAAA...TTCTGATAAAGAAGTCATGCGATTGAGTCCATTTTCCCTTACCCATGACTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR-3UTR CCA 90 bp ACTAGTTTAATTCTGAGCAACAATGTGTTGTCTTCCTTTTACAAGACCAGAGAGATGGGTAAGGGAAAATaGACTCAATCGCATGACTTC +
Preference number: 2 (lower is better)
Translates to: TSLILSNNVLSSFYKTREMGKGK*TQSHDF
Trigger: GAAGTCATGCGATTGAGTCCATTTTCCCTTACCCAT...CTCTCTGGTCTTGTAAAAGGAAGACAACACATTGTTGCTCAGAATTAAACTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR-3UTR CCA 90 bp ACTAGTTTAATTCTGAGCAACAATGTGTTGTCTTCCTTTTACAAGACCAGAGAGAATGCAGACCAGTTTTaGTTTGGTTCAGCTATATGC +
Preference number: 2 (lower is better)
Translates to: TSLILSNNVLSSFYKTRENADQF*FGSAIC
Trigger: GCATATAGCTGAACCAAACCAAAACTGGTCTGCATT...CTCTCTGGTCTTGTAAAAGGAAGACAACACATTGTTGCTCAGAATTAAACTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CCA 72 bp GGAAGGCAGGCCATAAAGGAAACCCCTTCTTGCAGCTaGCCAGCAGAGTATATCCCAGGCCTGCCTACGGCC +
Preference number: 3 (lower is better)
Translates to: GRQAIKETPSCS*PAEYIPGLPTA
Trigger: GGCCGTAGGCAGGCCTGGGATATACTCTGCTGGCCAGCTGCAAGAAGGGGTTTCCTTTATGGCCTGCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR GCA 72 bp CTAGGGGGAAGGCAGGCCATAAAGGAAACCCCTTCTTaGAGCTGGCCAGCAGAGTATATCCCAGGCCTGCCT +
Preference number: 3 (lower is better)
Translates to: LGGRQAIKETPS*SWPAEYIPGLP
Trigger: AGGCAGGCCTGGGATATACTCTGCTGGCCAGCTGCAAGAAGGGGTTTCCTTTATGGCCTGCCTTCCCCCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR TCA 72 bp CCAGGTAAGCCAGCTGAGGCTGGAGTTTATTGCCGATaGGCGCTGAGTCCCGGGAAGGAGCAAGGTGGAATA +
Preference number: 3 (lower is better)
Translates to: PGKPAEAGVYCR*ALSPGKEQGGI
Trigger: TATTCCACCTTGCTCCTTCCCGGGACTCAGCGCTCATCGGCAATAAACTCCAGCCTCAGCTGGCTTACCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR TCA 72 bp TGTCACCACCCAAACCAGGACAAGCTAGCTTACGGGTaGCATCCTCTACCCCTGCCATTGCAAACTATACCA +
Preference number: 3 (lower is better)
Translates to: CHHPNQDKLAYG*HPLPLPLQTIP
Trigger: TGGTATAGTTTGCAATGGCAGGGGTAGAGGATGTCACCCGTAAGCTAGCTTGTCCTGGTTTGGGTGGTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR GCA 72 bp ACATCCTCTACCCCTGCCATTGCAAACTATACCAACTaGAGTTTCCAGCACGCACCACTGTCTCCGAAGCTA +
Preference number: 3 (lower is better)
Translates to: TSSTPAIANYTN*SFQHAPLSPKL
Trigger: TAGCTTCGGAGACAGTGGTGCGTGCTGGAAACTGCAGTTGGTATAGTTTGCAATGGCAGGGGTAGAGGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CCA 72 bp TATATCCCAGGCCTGCCTACGGCCAAGCCACAGTCATaGGTAAGGGAAAATGGACTCAATCGCATGACTTCT +
Preference number: 3 (lower is better)
Translates to: YIPGLPTAKPQS*VRENGLNRMTS
Trigger: AGAAGTCATGCGATTGAGTCCATTTTCCCTTACCCATGACTGTGGCTTGGCCGTAGGCAGGCCTGGGATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CCA 72 bp GCCTACGGCCAAGCCACAGTCATGGGTAAGGGAAAATaGACTCAATCGCATGACTTCTTTATCAGAAGCTAC +
Preference number: 3 (lower is better)
Translates to: AYGQATVMGKGK*TQSHDFFIRSY
Trigger: GTAGCTTCTGATAAAGAAGTCATGCGATTGAGTCCATTTTCCCTTACCCATGACTGTGGCTTGGCCGTAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR GCA 72 bp AGCAATGCAGACCAGTTTTGGTTTGGTTCAGCTATATaGTCCACACTTCCAAAGCAGCAAATGTCACCACCC +
Preference number: 3 (lower is better)
Translates to: SNADQFWFGSAI*STLPKQQMSPP
Trigger: GGGTGGTGACATTTGCTGCTTTGGAAGTGTGGAGCATATAGCTGAACCAAACCAAAACTGGTCTGCATTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR GCA 72 bp GAAGCTACACCAGTCTCAACATGGCACCAACAGCAATaGAGACCAGTTTTGGTTTGGTTCAGCTATATGCTC +
Preference number: 3 (lower is better)
Translates to: EATPVSTWHQQQ*RPVLVWFSYML
Trigger: GAGCATATAGCTGAACCAAACCAAAACTGGTCTGCATTGCTGTTGGTGCCATGTTGAGACTGGTGTAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CCA 72 bp ACATGGCACCAACAGCAATGCAGACCAGTTTTGGTTTaGTTCAGCTATATGCTCCACACTTCCAAAGCAGCA +
Preference number: 3 (lower is better)
Translates to: TWHQQQCRPVLV*FSYMLHTSKAA
Trigger: TGCTGCTTTGGAAGTGTGGAGCATATAGCTGAACCAAACCAAAACTGGTCTGCATTGCTGTTGGTGCCATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CCA 72 bp TCTCAACATGGCACCAACAGCAATGCAGACCAGTTTTaGTTTGGTTCAGCTATATGCTCCACACTTCCAAAG +
Preference number: 3 (lower is better)
Translates to: SQHGTNSNADQF*FGSAICSTLPK
Trigger: CTTTGGAAGTGTGGAGCATATAGCTGAACCAAACCAAAACTGGTCTGCATTGCTGTTGGTGCCATGTTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
CDS-3UTR GCA 90 bp CAGCTATATGCTCCACACTTCCAAAGCAGCAAATGTCACCACCCAAACCAGGACCAAACAGGATGCGGGTaGGGCCGGAGGCGGGGCGGG +
Preference number: 4 (lower is better)
Translates to: QLYAPHFQSSKCHHPNQDQTGCG*GRRRGG
Trigger: CCCGCCCCGCCTCCGGCCGCACCCGCATCCTGTTTG...GTCCTGGTTTGGGTGGTGACATTTGCTGCTTTGGAAGTGTGGAGCATATAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CAA 72 bp CCTAGGGGGAAGGCAGGCCATAAAGGAAACCCCTTCTaGCAGCTGGCCAGCAGAGTATATCCCAGGCCTGCC +
Preference number: 4 (lower is better)
Translates to: PRGKAGHKGNPF*QLASRVYPRPA
Trigger: GGCAGGCCTGGGATATACTCTGCTGGCCAGCTGCAAGAAGGGGTTTCCTTTATGGCCTGCCTTCCCCCTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
CDS-3UTR TCA 90 bp GGCTGGAGTTTATTGCCGATGAGCGCTGAGTCCCGGGAAGGAGCAAGGTGGAATGCGTGGGAACCCAGATaGGCCCGTAGTACACAGCAA +
Preference number: 4 (lower is better)
Translates to: GWSLLPMSAESREGARWNAWEPR*ARSTQQ
Trigger: TTGCTGTGTACTACGGGCTCATCTGGGTTCCCACGC...ATTCCACCTTGCTCCTTCCCGGGACTCAGCGCTCATCGGCAATAAACTCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CAA 72 bp AACATGGCACCAACAGCAATGCAGACCAGTTTTGGTTaGGTTCAGCTATATGCTCCACACTTCCAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: NMAPTAMQTSFG*VQLYAPHFQSS
Trigger: GCTGCTTTGGAAGTGTGGAGCATATAGCTGAACCAAACCAAAACTGGTCTGCATTGCTGTTGGTGCCATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CAA 72 bp GTCTCAACATGGCACCAACAGCAATGCAGACCAGTTTaGGTTTGGTTCAGCTATATGCTCCACACTTCCAAA +
Preference number: 4 (lower is better)
Translates to: VSTWHQQQCRPV*VWFSYMLHTSK
Trigger: TTTGGAAGTGTGGAGCATATAGCTGAACCAAACCAAAACTGGTCTGCATTGCTGTTGGTGCCATGTTGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
3UTR CAA 72 bp GTCTTCCTTTTACAAGACCAGAGAGATTTAAGTACATaGCTGTACATCATCCCGTGGGGGATGCTGGTAGGA +
Preference number: 4 (lower is better)
Translates to: VFLLQDQRDLST*LYIIPWGMLVG
Trigger: TCCTACCAGCATCCCCCACGGGATGATGTACAGCAATGTACTTAAATCTCTCTGGTCTTGTAAAAGGAAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
CDS GCA 90 bp CTGCGGTCGTGGCCCGCCGGAGGCCCCAAGCAAACAGGATGCGGGTaGGGCCGGAGGCGGGGCGGGCGGTGCTGCTCGAGCACACGGAGC +
Preference number: 5 (lower is better)
Translates to: LRSWPAGGPKQTGCG*GRRRGGRCCSSTRS
Trigger: GCTCCGTGTGCTCGAGCAGCACCGCCCGCCCCGCCTCCGGCCGCACCCGCATCCTGTTTGCTTGGGGCCTCCGGCGGGCCACGACCGCAG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
CDS CCA 72 bp CGCTCGGCGCGCGGTCTCCCGCGTCGCTCCCGGAGCTaGGCGGCGACTGTGGCGGCGACTCCGTGGCAGTCC +
Preference number: 6 (lower is better)
Translates to: RSARGLPRRSRS*AATVAATPWQS
Trigger: GGACTGCCACGGAGTCGCCGCCACAGTCGCCGCCCAGCTCCGGGAGCGACGCGGGAGACCGCGCGCCGAGCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
CDS CCA 72 bp TCCCGGAGCTGGGCGGCGACTGTGGCGGCGACTCCGTaGCAGTCCTGGCTGCGGTCGTGGCCCGCCGGAGGC +
Preference number: 6 (lower is better)
Translates to: SRSWAATVAATP*QSWLRSWPAGG
Trigger: GCCTCCGGCGGGCCACGACCGCAGCCAGGACTGCCACGGAGTCGCCGCCACAGTCGCCGCCCAGCTCCGGGA
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3
CDS CCA 72 bp GTCTCCCGCGTCGCTCCCGGAGCTGGGCGGCGACTGTaGCGGCGACTCCGTGGCAGTCCTGGCTGCGGTCGT +
Preference number: 6 (lower is better)
Translates to: VSRVAPGAGRRL*RRLRGSPGCGR
Trigger: ACGACCGCAGCCAGGACTGCCACGGAGTCGCCGCCACAGTCGCCGCCCAGCTCCGGGAGCGACGCGGGAGAC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169612.3