RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IMP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026127

Ensembl transcript IDs: ENSMUST00000027303.14, ENSMUST00000136770.3, ENSMUST00000137794.8, ENSMUST00000149962.8

Found 193 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTCAGCTCACTCGGCACTCAGGAAGACCCTCTTGCGGGCGGTGTTaGTGTAGGGGTGCCAGCGCCACTCTACATCTGCGGTGGCCTCCT +
Preference number: 1 (lower is better)
Translates to: AQLTRHSGRPSCGRC*CRGASATLHLRWPP
Trigger: AGGAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAGAGGGTCTTCCTGAGTGCCGAGTGAGCTGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR GCA 90 bp CTTGCGGGCGGTGTTGGTGTAGGGGTGCCAGCGCCACTCTACATCTaGGGTGGCCTCCTGCTCCAGTGTGCCCAGGCGAATCATATACAA +
Preference number: 1 (lower is better)
Translates to: LAGGVGVGVPAPLYI*GGLLLQCAQANHIQ
Trigger: TTGTATATGATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR GCA 90 bp GACTGGCAAGTAGCTCAGCTCACTCGGCACTCAGGAAGACCCTCTTaGGGGCGGTGTTGGTGTAGGGGTGCCAGCGCCACTCTACATCTG +
Preference number: 1 (lower is better)
Translates to: DWQVAQLTRHSGRPS*GRCWCRGASATLHL
Trigger: CAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAGAGGGTCTTCCTGAGTGCCGAGTGAGCTGAGCTACTTGCCAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR TCA 90 bp GCCCCACGGGTGTGCCTCGATGCTCATGGACCACCAACAGGTCGGTaGCCCCGTTGGCTTTGCAAGCTCTCACTAGTGCTCCAACCTCAT +
Preference number: 1 (lower is better)
Translates to: APRVCLDAHGPPTGR*PRWLCKLSLVLQPH
Trigger: ATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACACCCGTGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR GCA 90 bp GTGACCCCGTTGGCTTTGCAAGCTCTCACTAGTGCTCCAACCTCATaGCGACCTCGGTTCATGCGCTGGGCACCTGGGAACACCAGCTTC +
Preference number: 1 (lower is better)
Translates to: VTPLALQALTSAPTS*RPRFMRWAPGNTSF
Trigger: GAAGCTGGTGTTCCCAGGTGCCCAGCGCATGAACCGAGGTCGGCATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CCA 90 bp AGTAAGTTGCAAACGGCTGTGGCACAGCCTCTTGAGGCCCTTCCCTaGGCAACACTAGCTCTCCCTGTGGCTGATGGACAGGCCCATTGT +
Preference number: 1 (lower is better)
Translates to: SKLQTAVAQPLEALP*ATLALPVADGQAHC
Trigger: ACAATGGGCCTGTCCATCAGCCACAGGGAGAGCTAGTGTTGCCCAGGGAAGGGCCTCAAGAGGCTGTGCCACAGCCGTTTGCAACTTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 90 bp GAGGTGCTCTCGCAGAAGATGGAGGTTCAATCTCCAGGATCCAGATaGTGGCTCCCAACTGTCTGTAACTCCAGACCCAGGGGATGCTAC +
Preference number: 1 (lower is better)
Translates to: EVLSQKMEVQSPGSR*WLPTVCNSRPRGCY
Trigger: GTAGCATCCCCTGGGTCTGGAGTTACAGACAGTTGGGAGCCATCATCTGGATCCTGGAGATTGAACCTCCATCTTCTGCGAGAGCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp TTCAGGAGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTaGGAGAGGAAGAGGGGATGGAGTAAGAGACTGCCTTTTTGGATG +
Preference number: 1 (lower is better)
Translates to: FRRPITRRGVGGTSG*ERKRGWSKRLPFWM
Trigger: CATCCAAAAAGGCAGTCTCTTACTCCATCCCCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCTCCTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp CTGGGTTTTCTTCAGGAGTCTCCTGTGAGGAGAAAAGTTGAAGCTTaGAGCCAGGGAGTGGAATGTGTCTCCCAGGGAGAGGTTTCACTC +
Preference number: 1 (lower is better)
Translates to: LGFLQESPVRRKVEA*SQGVECVSQGEVSL
Trigger: GAGTGAAACCTCTCCCTGGGAGACACATTCCACTCCCTGGCTCCAAGCTTCAACTTTTCTCCTCACAGGAGACTCCTGAAGAAAACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR GCA 90 bp AAGTGTTCACAGGGCCCAACTCTGAAGAAAGTAACCACTTTCCAGTaGAGATCTGCAGCCCTACCCCAGCCTGAAGGTGACTATTCAGTC +
Preference number: 1 (lower is better)
Translates to: KCSQGPTLKKVTTFQ*RSAALPQPEGDYSV
Trigger: GACTGAATAGTCACCTTCAGGCTGGGGTAGGGCTGCAGATCTGCACTGGAAAGTGGTTACTTTCTTCAGAGTTGGGCCCTGTGAACACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp GCTCCACAAGAATCCCTTATGGTAGCCATAAGAAATGTACAGAGCTaGGCTGTGGAGGTGCACGCCTTTAGTCTGAGCACTCATGAGGCA +
Preference number: 1 (lower is better)
Translates to: APQESLMVAIRNVQS*AVEVHAFSLSTHEA
Trigger: TGCCTCATGAGTGCTCAGACTAAAGGCGTGCACCTCCACAGCCCAGCTCTGTACATTTCTTATGGCTACCATAAGGGATTCTTGTGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp CCAACTGTCTGTAACTCCAGACCCAGGGGATGCTACACCTTCTCCTaGCCTCATCAGGTGGCAGATATATATGCAGGCAACTCTTACAGA +
Preference number: 1 (lower is better)
Translates to: PTVCNSRPRGCYTFS*PHQVADIYAGNSYR
Trigger: TCTGTAAGAGTTGCCTGCATATATATCTGCCACCTGATGAGGCCAGGAGAAGGTGTAGCATCCCCTGGGTCTGGAGTTACAGACAGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp TATCCTGCGGAGAGAGAGGGGATTCTGGAAAAGAGGCACAGGAGATaGTTGCATGAAACTGAGGTAACCAGCCATAGGGCACTCACAAAA +
Preference number: 1 (lower is better)
Translates to: YPAEREGILEKRHRR*LHETEVTSHRALTK
Trigger: TTTTGTGAGTGCCCTATGGCTGGTTACCTCAGTTTCATGCAACCATCTCCTGTGCCTCTTTTCCAGAATCCCCTCTCTCTCCGCAGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp AAGGGGCTCAGGTCATGGTCACAGTTGGAAGGAGCTAAAGAGTCATaGCTGAGGGTGTACCCATCCTGGCAGAAAGATGTTTTAAACAGG +
Preference number: 1 (lower is better)
Translates to: KGLRSWSQLEGAKES*LRVYPSWQKDVLNR
Trigger: CCTGTTTAAAACATCTTTCTGCCAGGATGGGTACACCCTCAGCCATGACTCTTTAGCTCCTTCCAACTGTGACCATGACCTGAGCCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 90 bp AAGTGGCAATCTCCAAGGAACTGGGTTTTCTTCAGGAGTCTCCTGTaGGGAGAAAAGTTGAAGCTTGGAGCCAGGGAGTGGAATGTGTCT +
Preference number: 1 (lower is better)
Translates to: KWQSPRNWVFFRSLL*GEKLKLGAREWNVS
Trigger: AGACACATTCCACTCCCTGGCTCCAAGCTTCAACTTTTCTCCTCACAGGAGACTCCTGAAGAAAACCCAGTTCCTTGGAGATTGCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 90 bp AAGAGCAAACACACCCCCATCCCCAACACACTCAGCCTTAGGGAGTaGACACCCTCACCTCGCACCATGAACCAATTTCTGTTAAATTAT +
Preference number: 1 (lower is better)
Translates to: KSKHTPIPNTLSLRE*TPSPRTMNQFLLNY
Trigger: ATAATTTAACAGAAATTGGTTCATGGTGCGAGGTGAGGGTGTTCACTCCCTAAGGCTGAGTGTGTTGGGGATGGGGGTGTGTTTGCTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp GTTTCACTCAGTTCTAACAACTTGTCAGACCAACTAGCAGGACCCTaGAGCCCAACGATAAACACATGGCCAGAGTCCATAGCGACATAT +
Preference number: 1 (lower is better)
Translates to: VSLSSNNLSDQLAGP*SPTINTWPESIATY
Trigger: ATATGTCGCTATGGACTCTGGCCATGTGTTTATCGTTGGGCTCCAGGGTCCTGCTAGTTGGTCTGACAAGTTGTTAGAACTGAGTGAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 90 bp CATCATCCAGATGGCTTCTGTTCTCTCACTATCGTTAGGTTTTCATaGCACCATGCAGACATCTCCCTTATCCTGTCTGGCATGCTTCCT +
Preference number: 1 (lower is better)
Translates to: HHPDGFCSLTIVRFS*HHADISLILSGMLP
Trigger: AGGAAGCATGCCAGACAGGATAAGGGAGATGTCTGCATGGTGTCATGAAAACCTAACGATAGTGAGAGAACAGAAGCCATCTGGATGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp TGCATTTTGAAATTTATACACACACACACACCACACGCAAAGCCATaGGAGGATCCCAGAGGCCTTGTTGAGAATTGGATTCATGAGCTG +
Preference number: 1 (lower is better)
Translates to: CILKFIHTHTPHAKP*EDPRGLVENWIHEL
Trigger: CAGCTCATGAATCCAATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGTGTGTATAAATTTCAAAATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp CTATTTAAACCTAAACCTCATGTCAGGACCAAAGGTGGACTTGGGTaGATGCCTTTCGCTATGACTTGGGTGTTTAATTGGCCTCTAGGA +
Preference number: 1 (lower is better)
Translates to: LFKPKPHVRTKGGLG*MPFAMTWVFNWPLG
Trigger: TCCTAGAGGCCAATTAAACACCCAAGTCATAGCGAAAGGCATCCACCCAAGTCCACCTTTGGTCCTGACATGAGGTTTAGGTTTAAATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 90 bp ACCAAGACAATCTGTCTTCTCCAAAAATTACCAATTCCACAATACTaGCCCCCGATGAAGATGACTTACATAAACTTCAGACACACAATT +
Preference number: 1 (lower is better)
Translates to: TKTICLLQKLPIPQY*PPMKMTYINFRHTI
Trigger: AATTGTGTGTCTGAAGTTTATGTAAGTCATCTTCATCGGGGGCCAGTATTGTGGAATTGGTAATTTTTGGAGAAGACAGATTGTCTTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 90 bp CCTCGATGCTCATGGACCACCAACAGGTCGGTGACCCCGTTGGCTTaGCAAGCTCTCACTAGTGCTCCAACCTCATGCCGACCTCGGTTC +
Preference number: 2 (lower is better)
Translates to: PRCSWTTNRSVTPLA*QALTSAPTSCRPRF
Trigger: GAACCGAGGTCGGCATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR-3UTR GCA 90 bp AGCTCACTCGGCACTCAGGAAGACCCTCTTGCGGGCGGTGTTGGTGTAGGGGTGCCTCCTGCTCCAGTGTaGCCAGGCGAATCATATACA +
Preference number: 2 (lower is better)
Translates to: SSLGTQEDPLAGGVGVGVPPAPV*PGESYT
Trigger: TGTATATGATTCGCCTGGGCACACTGGAGCAGGAGG...CACCCCTACACCAACACCGCCCGCAAGAGGGTCTTCCTGAGTGCCGAGTGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR-3UTR CCA 90 bp CCCCGTTGGCTTTGCAAGCTCTCACTAGTGCTCCAACCTCATGCCGACCTCGGTCATGCGCTGGGCACCTaGGAACACCAGCTTCAGTTC +
Preference number: 2 (lower is better)
Translates to: PRWLCKLSLVLQPHADLGHALGT*EHQLQF
Trigger: GAACTGAAGCTGGTGTTCCCAGGTGCCCAGCGCATG...ACCGAGGTCGGCATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR-3UTR CCA 90 bp GTCGTGCCGCATGACCACGTTACACAGTGTGAAATAGGCAGTAGGACCGAAGGGCCTCGGTTCATGCGCTaGGCACCTGGGAACACCAGC +
Preference number: 2 (lower is better)
Translates to: VVPHDHVTQCEIGSRTEGPRFMR*APGNTS
Trigger: GCTGGTGTTCCCAGGTGCCCAGCGCATGAACCGAGG...CCCTTCGGTCCTACTGCCTATTTCACACTGTGTAACGTGGTCATGCGGCACGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR-3UTR CCA 90 bp CACGCCTTTAGTCTGAGCACTCATGAGGCAGGGACAGGCCGATCTCTGAGCTCACTTGAGGCCCTTCCCTaGGCAACACTAGCTCTCCCT +
Preference number: 2 (lower is better)
Translates to: HAFSLSTHEAGTGRSLSSLEALP*ATLALP
Trigger: AGGGAGAGCTAGTGTTGCCCAGGGAAGGGCCTCAAG...TGAGCTCAGAGATCGGCCTGTCCCTGCCTCATGAGTGCTCAGACTAAAGGCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGCCACACGCAAAGCCATaGGAGGATCCCAGAGGCCTT +
Preference number: 2 (lower is better)
Translates to: RPITRRGVGGTSGWERKRPHAKP*EDPRGL
Trigger: AAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGG...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp AGGATTCCAAGTCTGCATTCTGACTGGCAAGTAGCTCAGCTCACTCGGCACTCATCTTGCGGGCGGTGTTaGTGTAGGGGTGCCAGCGCC +
Preference number: 2 (lower is better)
Translates to: RIPSLHSDWQVAQLTRHSSCGRC*CRGASA
Trigger: GGCGCTGGCACCCCTACACCAACACCGCCCGCAAGA...TGAGTGCCGAGTGAGCTGAGCTACTTGCCAGTCAGAATGCAGACTTGGAATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR-3UTR TCA 90 bp CAGGAGAGGAGGCGGGGCTTCAGAGCAAGGCAGAACCGCATCACTCAGTCAAGGGCTAGGTCTACAGAGTaGGTTCCAGGACAGCTAGAT +
Preference number: 2 (lower is better)
Translates to: QERRRGFRARQNRITQSRARSTE*VPGQLD
Trigger: ATCTAGCTGTCCTGGAACTCACTCTGTAGACCTAGC...CCTTGACTGAGTGATGCGGTTCTGCCTTGCTCTGAAGCCCCGCCTCCTCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp CACGCCTTTAGTCTGAGCACTCATGAGGCAGGGACAGGCCGATCTCTGAGCTCAATGGTAGGCAGGCTGTaGGTGTCACTCTGTCTCCTG +
Preference number: 2 (lower is better)
Translates to: HAFSLSTHEAGTGRSLSSMVGRL*VSLCLL
Trigger: CAGGAGACAGAGTGACACCCACAGCCTGCCTACCAT...TGAGCTCAGAGATCGGCCTGTCCCTGCCTCATGAGTGCTCAGACTAAAGGCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 90 bp ACACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTaGTTGAGAATTGGATTCATGAGCTGCAGTTGTGGGCCCACCCGT +
Preference number: 2 (lower is better)
Translates to: THTHHTQSHGRIPEA*LRIGFMSCSCGPTR
Trigger: ACGGGTGGGCCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR TCA 90 bp TCTATACAAACCCAGGGCCCTTGGGGAAGTTCAGGGTTTTGGATACAGAGAGGATGTGGCACAGCCTCTTaGGGCCCTTCCCTGGGCAAC +
Preference number: 2 (lower is better)
Translates to: SIQTQGPWGSSGFWIQRGCGTAS*GPSLGN
Trigger: GTTGCCCAGGGAAGGGCCTCAAGAGGCTGTGCCACA...TCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp CTCAAATCGAGGCCCGACCTCAGTCAGCTCCACATTGCGGTGGTCTGTCTTCTTTGGCTTCTGACATGGTaGCCAGGTCAGGGATGTCGT +
Preference number: 2 (lower is better)
Translates to: LKSRPDLSQLHIAVVCLLWLLTW*PGQGCR
Trigger: ACGACATCCCTGACCTGGGCACCATGTCAGAAGCCA...AAGAAGACAGACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTCGATTTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
3UTR-3UTR GCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGGATACAAAGGGTTACTaGAGCCATCAGAAGCCGAAG +
Preference number: 2 (lower is better)
Translates to: RPITRRGVGGTSGWERKRDTKGY*SHQKPK
Trigger: CTTCGGCTTCTGATGGCTGCAGTAACCCTTTGTATC...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp CTCTACATCTGCGGTGGCCTCCTGCTCCAGTGTGCCCAGGCGAATCATATACAACAGTCAGCTCCACATTaGGGTGGTCTGTCTTCTTGT +
Preference number: 2 (lower is better)
Translates to: LYICGGLLLQCAQANHIQQSAPH*GGLSSC
Trigger: ACAAGAAGACAGACCACCGCAATGTGGAGCTGACTG...TTGTATATGATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR-3UTR CCA 90 bp TCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTACATGAGCTGCAGTTGTaGGCCCACCCGTCCCAGAGC +
Preference number: 2 (lower is better)
Translates to: SKRPSELQKGKTRKETFLHELQL*AHPSQS
Trigger: GCTCTGGGACGGGTGGGCCCACAACTGCAGCTCATG...TAGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp GCTCCACATTGCGGTGGTCTGTCTTCTTGTAGACATGGTGCCGGAATGAAATGTACTCTACATCTGCGGTaGCCTCCTGCTCCAGTGTGC +
Preference number: 2 (lower is better)
Translates to: APHCGGLSSCRHGAGMKCTLHLR*PPAPVC
Trigger: GCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGT...ACATTTCATTCCGGCACCATGTCTACAAGAAGACAGACCACCGCAATGTGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR CAA 90 bp CAACCACTCTATACAAACCCAGGGCCCTTGGGGAAGTTCAGGGTTTaGGATACAGAGAGGACAGTAAGTTGCAAACGGCTGTGGCACAGC +
Preference number: 2 (lower is better)
Translates to: QPLYTNPGPLGKFRV*DTERTVSCKRLWHS
Trigger: GCTGTGCCACAGCCGTTTGCAACTTACTGTCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATAGAGTGGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR TCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGGCATGTAAGTGTGTGTaGATAAAACGTGCAAGACCT +
Preference number: 2 (lower is better)
Translates to: RPITRRGVGGTSGWERKRACKCV*IKRARP
Trigger: AGGTCTTGCACGTTTTATTCACACACACTTACATGC...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp TCTATACAAACCCAGGGCCCTTGGGGAAGTTCAGGGTTTTGGATACAGAGAGGAGGAGATGGGATATCCTaGGGAGAGAGAGGGGATTCT +
Preference number: 2 (lower is better)
Translates to: SIQTQGPWGSSGFWIQRGGDGIS*GERGDS
Trigger: AGAATCCCCTCTCTCTCCGCAGGATATCCCATCTCC...TCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp ATGCTCATGGACCACCAACAGGTCGGTGACCCCGTTGGCTTTGCAAGCTCTCACCAGCTTCAGTTCCTTTaGAAACATTTTCAGGCGAGA +
Preference number: 2 (lower is better)
Translates to: MLMDHQQVGDPVGFASSHQLQFL*KHFQAR
Trigger: TCTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTG...GTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR-3UTR CCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACACCAGTTAGAGGCAGCTaGGAGCGTGATGACAGAGGG +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTPVRGS*ERDDRG
Trigger: CCCTCTGTCATCACGCTCCCAGCTGCCTCTAACTGG...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATAGAGAGAGGGGATTCTaGAAAAGAGGCACAGGAGAT +
Preference number: 2 (lower is better)
Translates to: THTPHAKPWEDPRGLVENRERGF*KRGTGD
Trigger: ATCTCCTGTGCCTCTTTTCCAGAATCCCCTCTCTCT...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp ATGCTCATGGACCACCAACAGGTCGGTGACCCCGTTGGCTTTGCAAGCTCTCACTATTCATCATCTACATaGCTGGTTACACCTGGACAC +
Preference number: 2 (lower is better)
Translates to: MLMDHQQVGDPVGFASSHYSSST*LVTPGH
Trigger: GTGTCCAGGTGTAACCAGCCATGTAGATGATGAATA...GTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR-3UTR TCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGGTTCAGAATTGTAAATaGGATGGACCTAGACATGTG +
Preference number: 2 (lower is better)
Translates to: RPITRRGVGGTSGWERKRVQNCK*DGPRHV
Trigger: CACATGTCTAGGTCCATCTCATTTACAATTCTGAAC...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR TCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGTTTCCCAACTCTAGATaGAGAGGTGCAAAAAGAGAT +
Preference number: 2 (lower is better)
Translates to: RPITRRGVGGTSGWERKRFPNSR*RGAKRD
Trigger: ATCTCTTTTTGCACCTCTTCATCTAGAGTTGGGAAA...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp TTCCTCATCTTATTGGACCTCAAGGGCCTTGCACATCATCCAGATGGCTTCTGTGTAACCACTTTCCAGTaGAGATCTGCAGCCCTACCC +
Preference number: 2 (lower is better)
Translates to: FLILLDLKGLAHHPDGFCVTTFQ*RSAALP
Trigger: GGGTAGGGCTGCAGATCTGCACTGGAAAGTGGTTAC...ACAGAAGCCATCTGGATGATGTGCAAGGCCCTTGAGGTCCAATAAGATGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAATTGGTTGTTGGGGCTaGCAGAGCCCAGGCTGGAAT +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTIGCWG*QSPGWN
Trigger: ATTCCAGCCTGGGCTCTGGCAGCCCCAACAACCAAT...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp TCTATACAAACCCAGGGCCCTTGGGGAAGTTCAGGGTTTTGGATACAGAGAGGAGCAAGAAACAGGAGATaGGATATCCTGCGGAGAGAG +
Preference number: 2 (lower is better)
Translates to: SIQTQGPWGSSGFWIQRGARNRR*DILRRE
Trigger: CTCTCTCCGCAGGATATCCCATCTCCTGTTTCTTGC...TCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp CAGGAGAGGAGGCGGGGCTTCAGAGCAAGGCAGAACCGCATCACTCAGTCAAGGCTCTTGTGTTCTGTATaGAAATATCACTGGTCAATA +
Preference number: 2 (lower is better)
Translates to: QERRRGFRARQNRITQSRLLCSV*KYHWSI
Trigger: TATTGACCAGTGATATTTCCATACAGAACACAAGAG...CCTTGACTGAGTGATGCGGTTCTGCCTTGCTCTGAAGCCCCGCCTCCTCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACATGTCACTCTGTCTCCTaGGAAAGAGGGAGGGTGCAG +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTCHSVS*ERGRVQ
Trigger: CTGCACCCTCCCTCTTTCCCAGGAGACAGAGTGACA...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp TCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTACAAACCCAGGGCCCTTaGGGAAGTTCAGGGTTTTGG +
Preference number: 2 (lower is better)
Translates to: SKRPSELQKGKTRKETFLQTQGP*GSSGFW
Trigger: CCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTG...TAGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp ATCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTCCCGTCCCAGAGCACTaGCCTAACCTTCCTCATCTT +
Preference number: 2 (lower is better)
Translates to: IQEALRTPKGQDQKRNLSPVPEH*PNLPHL
Trigger: AAGATGAGGAAGGTTAGGCCAGTGCTCTGGGACGGG...AGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAAGAAATGTACAGAGCTaGGCTGTGGAGGTGCACGCC +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTRNVQS*AVEVHA
Trigger: GGCGTGCACCTCCACAGCCCAGCTCTGTACATTTCT...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAGTCCATAGCGACATATaGCAGCACACTCTGGCCAGG +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTVHSDI*QHTLAR
Trigger: CCTGGCCAGAGTGTGCTGCCATATGTCGCTATGGAC...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp GGAATAGGTAACGAAGGATGTCCGACACCTGGGGACACAGGGACAGAGAGTCACTATTCATCATCTACATaGCTGGTTACACCTGGACAC +
Preference number: 2 (lower is better)
Translates to: GIGNEGCPTPGDTGTESHYSSST*LVTPGH
Trigger: GTGTCCAGGTGTAACCAGCCATGTAGATGATGAATA...GTGACTCTCTGTCCCTGTGTCCCCAGGTGTCGGACATCCTTCGTTACCTATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
3UTR-3UTR CCA 90 bp TCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTATGCTACACCTTCTCCTaGCCTCATCAGGTGGCAGAT +
Preference number: 2 (lower is better)
Translates to: SKRPSELQKGKTRKETFLCYTFS*PHQVAD
Trigger: ATCTGCCACCTGATGAGGCCAGGAGAAGGTGTAGCA...TAGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 90 bp GTCACTCTGTCTCCTGGGAAAGAGGGAGGGTGCAGAGAGAATCTCTaGTGTTCTGTATGGAAATATCACTGGTCAATAGAAAAGTATGGC +
Preference number: 2 (lower is better)
Translates to: VTLSPGKEGGCRENL*CSVWKYHWSIEKYG
Trigger: GCCATACTTTTCTATTGACCAGTGATATTTCCATACAGAACACAAGAGATTCTCTCTGCACCCTCCCTCTTTCCCAGGAGACAGAGTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAGTTTTCATGACACCATaGAGACATCTCCCTTATCCT +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTVFMTP*RHLPYP
Trigger: AGGATAAGGGAGATGTCTGCATGGTGTCATGAAAAC...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp CATTGCGGTGGTCTGTCTTCTTGTAGACATGGTGCCGGAATGAAATGTAGTCATCAGCTTCAGTTCCTTTaGAAACATTTTCAGGCGAGA +
Preference number: 2 (lower is better)
Translates to: HCGGLSSCRHGAGMKCSHQLQFL*KHFQAR
Trigger: TCTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTG...ATGACTACATTTCATTCCGGCACCATGTCTACAAGAAGACAGACCACCGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
3UTR-3UTR GCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAATGGACCTAGACATGTaGAGTAAGCACAGTAACAAA +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTMDLDM*SKHSNK
Trigger: TTTGTTACTGTGCTTACTGCACATGTCTAGGTCCAT...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR GCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAACGAGGGGAATTTCATaGCAAATGAATTCAGAAAGG +
Preference number: 2 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTTRGIS*QMNSER
Trigger: CCTTTCTGAATTCATTTGGCATGAAATTCCCCTCGT...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR TCA 90 bp CCAGAAAAGAAACCTTTCTATCACATCATAATTAAGACACTAAACAGGCAGGACATCGTTAGGTTTTCATaGCACCATGCAGACATCTCC +
Preference number: 2 (lower is better)
Translates to: PEKKPFYHIIIKTLNRQDIVRFS*HHADIS
Trigger: GGAGATGTCTGCATGGTGTCATGAAAACCTAACGAT...GTCCTGCCTGTTTAGTGTCTTAATTATGATGTGATAGAAAGGTTTCTTTTCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CCA 90 bp CCAGAAAAGAAACCTTTCTATCACATCATAATTAAGACACTAAACAGGCAGGACGTATGGAAATATCACTaGTCAATAGAAAAGTATGGC +
Preference number: 2 (lower is better)
Translates to: PEKKPFYHIIIKTLNRQDVWKYH*SIEKYG
Trigger: GCCATACTTTTCTATTGACCAGTGATATTTCCATAC...GTCCTGCCTGTTTAGTGTCTTAATTATGATGTGATAGAAAGGTTTCTTTTCTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR GCA 72 bp GGTGTTGGTGTAGGGGTGCCAGCGCCACTCTACATCTaGGGTGGCCTCCTGCTCCAGTGTGCCCAGGCGAAT +
Preference number: 3 (lower is better)
Translates to: GVGVGVPAPLYI*GGLLLQCAQAN
Trigger: ATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR GCA 72 bp GTAGCTCAGCTCACTCGGCACTCAGGAAGACCCTCTTaGGGGCGGTGTTGGTGTAGGGGTGCCAGCGCCACT +
Preference number: 3 (lower is better)
Translates to: VAQLTRHSGRPS*GRCWCRGASAT
Trigger: AGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAGAGGGTCTTCCTGAGTGCCGAGTGAGCTGAGCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR CCA 72 bp ACTCGGCACTCAGGAAGACCCTCTTGCGGGCGGTGTTaGTGTAGGGGTGCCAGCGCCACTCTACATCTGCGG +
Preference number: 3 (lower is better)
Translates to: TRHSGRPSCGRC*CRGASATLHLR
Trigger: CCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAGAGGGTCTTCCTGAGTGCCGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR CCA 72 bp CTGACAATGAGCCCCACGGGTGTGCCTCGATGCTCATaGACCACCAACAGGTCGGTGACCCCGTTGGCTTTG +
Preference number: 3 (lower is better)
Translates to: LTMSPTGVPRCS*TTNRSVTPLAL
Trigger: CAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACACCCGTGGGGCTCATTGTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CCA 72 bp TGGTGTAGGGGTGCCAGCGCCACTCTACATCTGCGGTaGCCTCCTGCTCCAGTGTGCCCAGGCGAATCATAT +
Preference number: 3 (lower is better)
Translates to: WCRGASATLHLR*PPAPVCPGESY
Trigger: ATATGATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR GCA 72 bp GGGTGCCAGCGCCACTCTACATCTGCGGTGGCCTCCTaGTCCAGTGTGCCCAGGCGAATCATATACAACTTG +
Preference number: 3 (lower is better)
Translates to: GCQRHSTSAVAS*SSVPRRIIYNL
Trigger: CAAGTTGTATATGATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR-3UTR CAA 90 bp GAAGACCCTCTTGCGGGCGGTGTTGGTGTAGGGGTGCCAGCGCCACTCTACATCTCAGTCAGCTCCACATaGCGGTGGTCTGTCTTCTTG +
Preference number: 3 (lower is better)
Translates to: EDPLAGGVGVGVPAPLYISVSST*RWSVFL
Trigger: CAAGAAGACAGACCACCGCAATGTGGAGCTGACTGA...GATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAGAGGGTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR TCA 72 bp GTGTGCCTCGATGCTCATGGACCACCAACAGGTCGGTaGCCCCGTTGGCTTTGCAAGCTCTCACTAGTGCTC +
Preference number: 3 (lower is better)
Translates to: VCLDAHGPPTGR*PRWLCKLSLVL
Trigger: GAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR TCA 72 bp GGAAAAGCCATGAGTGATGAGGTGGGGCTTGGCTTCTaGCATGGTGCCCAGGTCAGGGATGTCGTGCCGCAT +
Preference number: 3 (lower is better)
Translates to: GKAMSDEVGLGF*HGAQVRDVVPH
Trigger: ATGCGGCACGACATCCCTGACCTGGGCACCATGTCAGAAGCCAAGCCCCACCTCATCACTCATGGCTTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
3UTR GCA 72 bp ATCCCAGAGGCCTTGTTGAGAATTGGATTCATGAGCTaGAGTTGTGGGCCCACCCGTCCCAGAGCACTGGCC +
Preference number: 3 (lower is better)
Translates to: IPEALLRIGFMS*SCGPTRPRALA
Trigger: GGCCAGTGCTCTGGGACGGGTGGGCCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCCTCTGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR GCA 72 bp TTGGCTTTGCAAGCTCTCACTAGTGCTCCAACCTCATaGCGACCTCGGTTCATGCGCTGGGCACCTGGGAAC +
Preference number: 3 (lower is better)
Translates to: LALQALTSAPTS*RPRFMRWAPGN
Trigger: GTTCCCAGGTGCCCAGCGCATGAACCGAGGTCGGCATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR GCA 72 bp TGGCTCCCAACTGTCTGTAACTCCAGACCCAGGGGATaGTACACCTTCTCCTGGCCTCATCAGGTGGCAGAT +
Preference number: 3 (lower is better)
Translates to: WLPTVCNSRPRG*YTFSWPHQVAD
Trigger: ATCTGCCACCTGATGAGGCCAGGAGAAGGTGTAGCATCCCCTGGGTCTGGAGTTACAGACAGTTGGGAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GGCCTTGTTGAGAATTGGATTCATGAGCTGCAGTTGTaGGCCCACCCGTCCCAGAGCACTGGCCTAACCTTC +
Preference number: 3 (lower is better)
Translates to: GLVENWIHELQL*AHPSQSTGLTF
Trigger: GAAGGTTAGGCCAGTGCTCTGGGACGGGTGGGCCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp AAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATTaGATTCATGAGCTGCAGTTGTGGGCCCACCCGTCC +
Preference number: 3 (lower is better)
Translates to: KPWEDPRGLVEN*IHELQLWAHPS
Trigger: GGACGGGTGGGCCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp CCTGCTCCAGTGTGCCCAGGCGAATCATATACAACTTaGGCTCAAATCGAGGCCCGACCTCAGTCAGCTCCA +
Preference number: 3 (lower is better)
Translates to: PAPVCPGESYTT*AQIEARPQSAP
Trigger: TGGAGCTGACTGAGGTCGGGCCTCGATTTGAGCTCAAGTTGTATATGATTCGCCTGGGCACACTGGAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
3UTR GCA 72 bp CAGGGCCCAACTCTGAAGAAAGTAACCACTTTCCAGTaGAGATCTGCAGCCCTACCCCAGCCTGAAGGTGAC +
Preference number: 3 (lower is better)
Translates to: QGPTLKKVTTFQ*RSAALPQPEGD
Trigger: GTCACCTTCAGGCTGGGGTAGGGCTGCAGATCTGCACTGGAAAGTGGTTACTTTCTTCAGAGTTGGGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp GGAATAGGTAACGAAGGATGTCCGACACCTGGGGACACAGGGACAGAGAGTCACTCAGTCAGCTCCACATaGCGGTGGTCTGTCTTCTTG +
Preference number: 3 (lower is better)
Translates to: GIGNEGCPTPGDTGTESHSVSST*RWSVFL
Trigger: CAAGAAGACAGACCACCGCAATGTGGAGCTGACTGA...GTGACTCTCTGTCCCTGTGTCCCCAGGTGTCGGACATCCTTCGTTACCTATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
3UTR TCA 72 bp TCCCATCACCAATTCTCTCTGCGAGCTCTAGGGTCTTaGCAACCACTCTATACAAACCCAGGGCCCTTGGGG +
Preference number: 3 (lower is better)
Translates to: SHHQFSLRALGS*QPLYTNPGPLG
Trigger: CCCCAAGGGCCCTGGGTTTGTATAGAGTGGTTGTCAAGACCCTAGAGCTCGCAGAGAGAATTGGTGATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp CTTCAGGAGTCTCCTGTGAGGAGAAAAGTTGAAGCTTaGAGCCAGGGAGTGGAATGTGTCTCCCAGGGAGAG +
Preference number: 3 (lower is better)
Translates to: LQESPVRRKVEA*SQGVECVSQGE
Trigger: CTCTCCCTGGGAGACACATTCCACTCCCTGGCTCCAAGCTTCAACTTTTCTCCTCACAGGAGACTCCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACACTGTGGCACAGCCTCTaGAGGCCCTTCCCTGGGCAA +
Preference number: 3 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTLWHSL*RPFPGQ
Trigger: TTGCCCAGGGAAGGGCCTCAAGAGGCTGTGCCACAG...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GCTTGGGTTAAGAACACGAGGTGCTCTCGCAGAAGATaGAGGTTCAATCTCCAGGATCCAGATGATGGCTCC +
Preference number: 3 (lower is better)
Translates to: AWVKNTRCSRRR*RFNLQDPDDGS
Trigger: GGAGCCATCATCTGGATCCTGGAGATTGAACCTCCATCTTCTGCGAGAGCACCTCGTGTTCTTAACCCAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATAGGCACAGGAGATGGTaGCATGAAACTGAGGTAACC +
Preference number: 3 (lower is better)
Translates to: THTPHAKPWEDPRGLVENRHRRW*HETEVT
Trigger: GGTTACCTCAGTTTCATGCAACCATCTCCTGTGCCT...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp CTCAAATCGAGGCCCGACCTCAGTCAGCTCCACATTGCGGTGGTCTGTCTTCTTCCAGCTTCAGTTCCTTaGCAAACATTTTCAGGCGAG +
Preference number: 3 (lower is better)
Translates to: LKSRPDLSQLHIAVVCLLPASVP*QTFSGE
Trigger: CTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTGG...AAGAAGACAGACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTCGATTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
3UTR-3UTR CAA 90 bp TTCCTCATCTTATTGGACCTCAAGGGCCTTGCACATCATCCAGATGGCTTCTGTACAAACCCAGGGCCCTaGGGGAAGTTCAGGGTTTTG +
Preference number: 3 (lower is better)
Translates to: FLILLDLKGLAHHPDGFCTNPGP*GKFRVL
Trigger: CAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGT...ACAGAAGCCATCTGGATGATGTGCAAGGCCCTTGAGGTCCAATAAGATGAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp TCTCCAAGGAACTGGGTTTTCTTCAGGAGTCTCCTGTaGGGAGAAAAGTTGAAGCTTGGAGCCAGGGAGTGG +
Preference number: 3 (lower is better)
Translates to: SPRNWVFFRSLL*GEKLKLGAREW
Trigger: CCACTCCCTGGCTCCAAGCTTCAACTTTTCTCCTCACAGGAGACTCCTGAAGAAAACCCAGTTCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR GCA 72 bp AAGTTCAGGGTTTTGGATACAGAGAGGACAGTAAGTTaGAAACGGCTGTGGCACAGCCTCTTGAGGCCCTTC +
Preference number: 3 (lower is better)
Translates to: KFRVLDTERTVS*KRLWHSLLRPF
Trigger: GAAGGGCCTCAAGAGGCTGTGCCACAGCCGTTTGCAACTTACTGTCCTCTCTGTATCCAAAACCCTGAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp AGGAGATGGGATATCCTGCGGAGAGAGAGGGGATTCTaGAAAAGAGGCACAGGAGATGGTTGCATGAAACTG +
Preference number: 3 (lower is better)
Translates to: RRWDILRRERGF*KRGTGDGCMKL
Trigger: CAGTTTCATGCAACCATCTCCTGTGCCTCTTTTCCAGAATCCCCTCTCTCTCCGCAGGATATCCCATCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GGTCTTGACAACCACTCTATACAAACCCAGGGCCCTTaGGGAAGTTCAGGGTTTTGGATACAGAGAGGACAG +
Preference number: 3 (lower is better)
Translates to: GLDNHSIQTQGP*GSSGFWIQRGQ
Trigger: CTGTCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATAGAGTGGTTGTCAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACATGGACCTCAAGGGCCTaGCACATCATCCAGATGGCT +
Preference number: 3 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTWTSRA*HIIQMA
Trigger: AGCCATCTGGATGATGTGCAAGGCCCTTGAGGTCCA...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp GTCAACAGACTCAGCACTGAAGATGAAGGCCGACAGTaGAGTGCTATGGTAGCAAGAGGCGATACAAAGGGT +
Preference number: 3 (lower is better)
Translates to: VNRLSTEDEGRQ*SAMVARGDTKG
Trigger: ACCCTTTGTATCGCCTCTTGCTACCATAGCACTTCACTGTCGGCCTTCATCTTCAGTGCTGAGTCTGTTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GAATCCCTTATGGTAGCCATAAGAAATGTACAGAGCTaGGCTGTGGAGGTGCACGCCTTTAGTCTGAGCACT +
Preference number: 3 (lower is better)
Translates to: ESLMVAIRNVQS*AVEVHAFSLST
Trigger: AGTGCTCAGACTAAAGGCGTGCACCTCCACAGCCCAGCTCTGTACATTTCTTATGGCTACCATAAGGGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp CCAGGGGATGCTACACCTTCTCCTGGCCTCATCAGGTaGCAGATATATATGCAGGCAACTCTTACAGATTAC +
Preference number: 3 (lower is better)
Translates to: PGDATPSPGLIR*QIYMQATLTDY
Trigger: GTAATCTGTAAGAGTTGCCTGCATATATATCTGCCACCTGATGAGGCCAGGAGAAGGTGTAGCATCCCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GGAGCTAAAGAGTCATGGCTGAGGGTGTACCCATCCTaGCAGAAAGATGTTTTAAACAGGCTCTCTGTGTCC +
Preference number: 3 (lower is better)
Translates to: GAKESWLRVYPS*QKDVLNRLSVS
Trigger: GGACACAGAGAGCCTGTTTAAAACATCTTTCTGCCAGGATGGGTACACCCTCAGCCATGACTCTTTAGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp CCTAAACCTCATGTCAGGACCAAAGGTGGACTTGGGTaGATGCCTTTCGCTATGACTTGGGTGTTTAATTGG +
Preference number: 3 (lower is better)
Translates to: PKPHVRTKGGLG*MPFAMTWVFNW
Trigger: CCAATTAAACACCCAAGTCATAGCGAAAGGCATCCACCCAAGTCCACCTTTGGTCCTGACATGAGGTTTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp ATCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTGGGAAGTTCAGGGTTTaGGATACAGAGAGGACAGTA +
Preference number: 3 (lower is better)
Translates to: IQEALRTPKGQDQKRNLSGKFRV*DTERTV
Trigger: TACTGTCCTCTCTGTATCCAAAACCCTGAACTTCCC...AGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACACTCTTCCAAAGAACATaGGCTGCCCTGGGTTATAGT +
Preference number: 3 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTLFQRT*AALGYS
Trigger: ACTATAACCCAGGGCAGCCAATGTTCTTTGGAAGAG...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp GATGGCTTCTGTTCTCTCACTATCGTTAGGTTTTCATaGCACCATGCAGACATCTCCCTTATCCTGTCTGGC +
Preference number: 3 (lower is better)
Translates to: DGFCSLTIVRFS*HHADISLILSG
Trigger: GCCAGACAGGATAAGGGAGATGTCTGCATGGTGTCATGAAAACCTAACGATAGTGAGAGAACAGAAGCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp TCCAGCTCTTGTTCCCCTACAGCTCTTCCTAATTTATaGTACCCAAGGTCAATGCAGCAGACCACCATAGTC +
Preference number: 3 (lower is better)
Translates to: SSSCSPTALPNL*YPRSMQQTTIV
Trigger: GACTATGGTGGTCTGCTGCATTGACCTTGGGTATCATAAATTAGGAAGAGCTGTAGGGGAACAAGAGCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR GCA 72 bp CCTAACCTTCCTCATCTTATTGGACCTCAAGGGCCTTaGACATCATCCAGATGGCTTCTGTTCTCTCACTAT +
Preference number: 3 (lower is better)
Translates to: PNLPHLIGPQGP*TSSRWLLFSHY
Trigger: ATAGTGAGAGAACAGAAGCCATCTGGATGATGTGCAAGGCCCTTGAGGTCCAATAAGATGAGGAAGGTTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GGGTGGATGCCTTTCGCTATGACTTGGGTGTTTAATTaGCCTCTAGGACAACTGGTAGAACATTGGTTGTTG +
Preference number: 3 (lower is better)
Translates to: GWMPFAMTWVFN*PLGQLVEHWLL
Trigger: CAACAACCAATGTTCTACCAGTTGTCCTAGAGGCCAATTAAACACCCAAGTCATAGCGAAAGGCATCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp AAATTTATACACACACACACACCACACGCAAAGCCATaGGAGGATCCCAGAGGCCTTGTTGAGAATTGGATT +
Preference number: 3 (lower is better)
Translates to: KFIHTHTPHAKP*EDPRGLVENWI
Trigger: AATCCAATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGTGTGTATAAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp CACTTAGGATTAGTGAATCTGTCTGTGACAAGTCTCTaGTCCAGGATTCCAAGTCTGCATTCTGACTGGCAA +
Preference number: 3 (lower is better)
Translates to: HLGLVNLSVTSL*SRIPSLHSDWQ
Trigger: TTGCCAGTCAGAATGCAGACTTGGAATCCTGGATCAGAGACTTGTCACAGACAGATTCACTAATCCTAAGTG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp CACTCAGTCAAGGCCAATGATGCATGTAAGTGTGTGTaGATAAAACGTGCAAGACCTTTGGGGCATTATGCA +
Preference number: 3 (lower is better)
Translates to: HSVKANDACKCV*IKRARPLGHYA
Trigger: TGCATAATGCCCCAAAGGTCTTGCACGTTTTATTCACACACACTTACATGCATCATTGGCCTTGACTGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp GCTCTCCGACTTCCTGTGCAGGTCAGGGATAGAGTCTaGACAAGTCTAAAAGAAAATGTCAACTCAACCTTA +
Preference number: 3 (lower is better)
Translates to: ALRLPVQVRDRV*TSLKENVNSTL
Trigger: TAAGGTTGAGTTGACATTTTCTTTTAGACTTGTTCAGACTCTATCCCTGACCTGCACAGGAAGTCGGAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR-3UTR CAA 90 bp TTCCTCATCTTATTGGACCTCAAGGGCCTTGCACATCATCCAGATGGCTTCTGTTGCAGAGAGAATCTCTaGTGTTCTGTATGGAAATAT +
Preference number: 3 (lower is better)
Translates to: FLILLDLKGLAHHPDGFCCRENL*CSVWKY
Trigger: ATATTTCCATACAGAACACAAGAGATTCTCTCTGCA...ACAGAAGCCATCTGGATGATGTGCAAGGCCCTTGAGGTCCAATAAGATGAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp AATTTGATAAAGACATACAGAGAGGAAAACCTGAACTaGGATGAGGGTAGAAAGCGAAAAGTGCAGGTCAGG +
Preference number: 3 (lower is better)
Translates to: NLIKTYREENLN*DEGRKRKVQVR
Trigger: CCTGACCTGCACTTTTCGCTTTCTACCCTCATCTCAGTTCAGGTTTTCCTCTCTGTATGTCTTTATCAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR TCA 72 bp CTTAACCTCCAGAGAGAGGAGACTGGAGTCCATTTTTaGGTGTATGTCTTTGAGATTCCTTTTCAGCTTACT +
Preference number: 3 (lower is better)
Translates to: LNLQREETGVHF*VYVFEIPFQLT
Trigger: AGTAAGCTGAAAAGGAATCTCAAAGACATACACTCAAAAATGGACTCCAGTCTCCTCTCTCTGGAGGTTAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp TTGTTTCAACCATTCCTTCTACACATGCCCCCTTTGTaGCAGAAACATCCCCTAATGAATAAAGATTTCAGG +
Preference number: 3 (lower is better)
Translates to: LFQPFLLHMPPL*QKHPLMNKDFR
Trigger: CCTGAAATCTTTATTCATTAGGGGATGTTTCTGCCACAAAGGGGGCATGTGTAGAAGGAATGGTTGAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp ACATGGATAGTCACCAAGAGAACACAAACATCAGCATaGAATCAGAAAGTCCATTCAAGATGTGAAAGTAGA +
Preference number: 3 (lower is better)
Translates to: TWIVTKRTQTSA*NQKVHSRCESR
Trigger: TCTACTTTCACATCTTGAATGGACTTTCTGATTCCATGCTGATGTTTGTGTTCTCTTGGTGACTATCCATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp ATCTGTCTTCTCCAAAAATTACCAATTCCACAATACTaGCCCCCGATGAAGATGACTTACATAAACTTCAGA +
Preference number: 3 (lower is better)
Translates to: ICLLQKLPIPQY*PPMKMTYINFR
Trigger: TCTGAAGTTTATGTAAGTCATCTTCATCGGGGGCCAGTATTGTGGAATTGGTAATTTTTGGAGAAGACAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp GATAAAGATGAATTAAAATTAGATCGATCGTGGAGATaGCTGCAGAGCTCTATGAATATCACTATACCTCCC +
Preference number: 3 (lower is better)
Translates to: DKDELKLDRSWR*LQSSMNITIPP
Trigger: GGGAGGTATAGTGATATTCATAGAGCTCTGCAGCCATCTCCACGATCGATCTAATTTTAATTCATCTTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR GCA 72 bp AAGTTCAGAATTGTAAATGAGATGGACCTAGACATGTaGAGTAAGCACAGTAACAAAGGTCCTTCTAAGAAA +
Preference number: 3 (lower is better)
Translates to: KFRIVNEMDLDM*SKHSNKGPSKK
Trigger: TTTCTTAGAAGGACCTTTGTTACTGTGCTTACTGCACATGTCTAGGTCCATCTCATTTACAATTCTGAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CCA 72 bp CTCGAGGATAAAGATGAATTAAAATTAGATCGATCGTaGAGATGGCTGCAGAGCTCTATGAATATCACTATA +
Preference number: 3 (lower is better)
Translates to: LEDKDELKLDRS*RWLQSSMNITI
Trigger: TATAGTGATATTCATAGAGCTCTGCAGCCATCTCCACGATCGATCTAATTTTAATTCATCTTTATCCTCGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp GCGGGCGGTGTTGGTGTAGGGGTGCCAGCGCCACTCTACATCTGCGGTGGCCTCCATGCGCTGGGCACCTaGGAACACCAGCTTCAGTTC +
Preference number: 4 (lower is better)
Translates to: AGGVGVGVPAPLYICGGLHALGT*EHQLQF
Trigger: GAACTGAAGCTGGTGTTCCCAGGTGCCCAGCGCATG...GAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR TCA 90 bp CCCACAGGGTTCCCATACTCACCCGCTTGCCCAGCCGTGAGGAAAAGCCATGAGCGCTCCTTCTTCTCCTaGACGGATCGCTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: PTGFPYSPACPAVRKSHERSFFS*TDRCAS
Trigger: GGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGCG...CTCATGGCTTTTCCTCACGGCTGGGCAAGCGGGTGAGTATGGGAACCCTGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149962.8
CDS-3UTR GCA 90 bp ACCCCGTTGGCTTTGCAAGCTCTCACTAGTGCTCCAACCTCATGCCGACCTCGGCCTCCTCCCGGGCTTTaGGGTACAGGTACTCGCGGC +
Preference number: 4 (lower is better)
Translates to: TPLALQALTSAPTSCRPRPPPGL*GTGTRG
Trigger: GCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGG...CCGAGGTCGGCATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR TCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGGTGGGGCTTGGCTTCTaGCATGGTGCCCAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: RPITRRGVGGTSGWERKRVGLGF*HGAQVR
Trigger: CCTGACCTGGGCACCATGTCAGAAGCCAAGCCCCAC...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp AACTTGAGCTCAAATCGAGGCCCGACCTCAGTCAGCTCCACATTGCGGTGGTCTCCTCCTCCCGGGCTTTaGGGTACAGGTACTCGCGGC +
Preference number: 4 (lower is better)
Translates to: NLSSNRGPTSVSSTLRWSPPPGL*GTGTRG
Trigger: GCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGG...AGACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTCGATTTGAGCTCAAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136770.3
ENSMUST00000149962.8
CDS-3UTR GCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGGCCGACCTCGGTTCATaGGCTGGGCACCTGGGAACA +
Preference number: 4 (lower is better)
Translates to: RPITRRGVGGTSGWERKRADLGS*AGHLGT
Trigger: TGTTCCCAGGTGCCCAGCGCATGAACCGAGGTCGGC...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp CAACTTGAGCTCAAATCGAGGCCCGACCTCAGTCAGCTCCACATTGCGGTGGTCGCCGACCTCGGTTCATaGGCTGGGCACCTGGGAACA +
Preference number: 4 (lower is better)
Translates to: QLELKSRPDLSQLHIAVVADLGS*AGHLGT
Trigger: TGTTCCCAGGTGCCCAGCGCATGAACCGAGGTCGGC...GACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTCGATTTGAGCTCAAGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR CCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGCCTCGGTTCATGCGCTaGGCACCTGGGAACACCAGC +
Preference number: 4 (lower is better)
Translates to: RPITRRGVGGTSGWERKRPRFMR*APGNTS
Trigger: GCTGGTGTTCCCAGGTGCCCAGCGCATGAACCGAGG...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp CCACTCTACATCTGCGGTGGCCTCCTGCTCCAGTGTGCCCAGGCGAATCATATACCTCGGTTCATGCGCTaGGCACCTGGGAACACCAGC +
Preference number: 4 (lower is better)
Translates to: PLYICGGLLLQCAQANHIPRFMR*APGNTS
Trigger: GCTGGTGTTCCCAGGTGCCCAGCGCATGAACCGAGG...TATATGATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR TCA 90 bp GAGGCCCGACCTCAGTCAGCTCCACATTGCGGTGGTCTGTCTTCTTGTAGACATCGCTCCTTCTTCTCCTaGACGGATCGCTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: EARPQSAPHCGGLSSCRHRSFFS*TDRCAS
Trigger: GGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGCG...ATGTCTACAAGAAGACAGACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136770.3
ENSMUST00000149962.8
CDS-3UTR TCA 90 bp GTCGTGCCGCATGACCACGTTACACAGTGTGAAATAGGCAGTAGGACCGAAGGGCGCTCCTTCTTCTCCTaGACGGATCGCTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: VVPHDHVTQCEIGSRTEGRSFFS*TDRCAS
Trigger: GGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGCG...CCCTTCGGTCCTACTGCCTATTTCACACTGTGTAACGTGGTCATGCGGCACGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR TCA 90 bp AGACCAATCACTAGGCGAGGAGTAGGTGGGACTTCTGGGTGGGAGAGGAAGAGGCCACCAACAGGTCGGTaGCCCCGTTGGCTTTGCAAG +
Preference number: 4 (lower is better)
Translates to: RPITRRGVGGTSGWERKRPPTGR*PRWLCK
Trigger: CTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGG...CCTCTTCCTCTCCCACCCAGAAGTCCCACCTACTCCTCGCCTAGTGATTGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATCCTCCTCCCGGGCTTTaGGGTACAGGTACTCGCGGC +
Preference number: 4 (lower is better)
Translates to: THTPHAKPWEDPRGLVENPPPGL*GTGTRG
Trigger: GCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGG...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATTCTGCGGTGGCCTCCTaGTCCAGTGTGCCCAGGCGA +
Preference number: 4 (lower is better)
Translates to: THTPHAKPWEDPRGLVENSAVAS*SSVPRR
Trigger: TCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGA...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp GACCCTCTTGCGGGCGGTGTTGGTGTAGGGGTGCCAGCGCCACTCTACATCTGCTCGGTGGGAATCAGCTaGTTTTCTTCTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: DPLAGGVGVGVPAPLYICSVGIS*FSSRAR
Trigger: GCGTGCTCTAGAAGAAAACCAGCTGATTCCCACCGA...GCAGATGTAGAGTGGCGCTGGCACCCCTACACCAACACCGCCCGCAAGAGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR CCA 90 bp CTCCAACCTCATGCCGACCTCGGTTCATGCGCTGGGCACCTGGGAACACCAGCTGGAAATTGTCCAGTGTaGCTGAAGAGGACCTGGAGC +
Preference number: 4 (lower is better)
Translates to: LQPHADLGSCAGHLGTPAGNCPV*LKRTWS
Trigger: GCTCCAGGTCCTCTTCAGCCACACTGGACAATTTCC...AGCTGGTGTTCCCAGGTGCCCAGCGCATGAACCGAGGTCGGCATGAGGTTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR TCA 90 bp TGCTCATGGACCACCAACAGGTCGGTGACCCCGTTGGCTTTGCAAGCTCTCACTATTGTCCAGTGTGGCTaGAGAGGACCTGGAGCCCAG +
Preference number: 4 (lower is better)
Translates to: CSWTTNRSVTPLALQALTIVQCG*RGPGAQ
Trigger: CTGGGCTCCAGGTCCTCTTCAGCCACACTGGACAAT...AGTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR GCA 90 bp CATGACCACGTTACACAGTGTGAAATAGGCAGTAGGACCGAAGGGCAGATGGCTCCTCCTCCCGGGCTTTaGGGTACAGGTACTCGCGGC +
Preference number: 4 (lower is better)
Translates to: HDHVTQCEIGSRTEGQMAPPPGL*GTGTRG
Trigger: GCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGG...AGCCATCTGCCCTTCGGTCCTACTGCCTATTTCACACTGTGTAACGTGGTCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CAA 72 bp AGAGGCCTTGTTGAGAATTGGATTCATGAGCTGCAGTaGTGGGCCCACCCGTCCCAGAGCACTGGCCTAACC +
Preference number: 4 (lower is better)
Translates to: RGLVENWIHELQ*WAHPSQSTGLT
Trigger: GGTTAGGCCAGTGCTCTGGGACGGGTGGGCCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp TCCAGGATTCCAAGTCTGCATTCTGACTGGCAAGTAGCTCAGCTCACTCGGCACAGTGCTCCAACCTCATaGCGACCTCGGTTCATGCGC +
Preference number: 4 (lower is better)
Translates to: SRIPSLHSDWQVAQLTRHSAPTS*RPRFMR
Trigger: GCGCATGAACCGAGGTCGGCATGAGGTTGGAGCACT...GTGCCGAGTGAGCTGAGCTACTTGCCAGTCAGAATGCAGACTTGGAATCCTGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR GCA 90 bp CACGCCTTTAGTCTGAGCACTCATGAGGCAGGGACAGGCCGATCTCTGAGCTCACCTCCTGCTCCAGTGTaGCCAGGCGAATCATATACA +
Preference number: 4 (lower is better)
Translates to: HAFSLSTHEAGTGRSLSSPPAPV*PGESYT
Trigger: TGTATATGATTCGCCTGGGCACACTGGAGCAGGAGG...TGAGCTCAGAGATCGGCCTGTCCCTGCCTCATGAGTGCTCAGACTAAAGGCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATACTCTACATCTGCGGTaGCCTCCTGCTCCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: THTPHAKPWEDPRGLVENTLHLR*PPAPVC
Trigger: GCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGT...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 72 bp CACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTaGAGAATTGGATTCATGAGCTGCAGTTGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: HTQSHGRIPEAL*RIGFMSCSCGP
Trigger: GGGCCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR TCA 90 bp TCCTCAACCCCGGCCCATCGATATTCATCATCTACATGGCTGGTTACACCTGGAATTGTCCAGTGTGGCTaGAGAGGACCTGGAGCCCAG +
Preference number: 4 (lower is better)
Translates to: SSTPAHRYSSSTWLVTPGIVQCG*RGPGAQ
Trigger: CTGGGCTCCAGGTCCTCTTCAGCCACACTGGACAAT...TCCAGGTGTAACCAGCCATGTAGATGATGAATATCGATGGGCCGGGGTTGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR GCA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATAGGTCAGGGATGTCGTaGCGCATGACCACGTTACAC +
Preference number: 4 (lower is better)
Translates to: THTPHAKPWEDPRGLVENRSGMS*RMTTLH
Trigger: GTGTAACGTGGTCATGCGGCACGACATCCCTGACCT...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp TTCCTCATCTTATTGGACCTCAAGGGCCTTGCACATCATCCAGATGGCTTCTGTGCGCCACTCTACATCTaGGGTGGCCTCCTGCTCCAG +
Preference number: 4 (lower is better)
Translates to: FLILLDLKGLAHHPDGFCAPLYI*GGLLLQ
Trigger: CTGGAGCAGGAGGCCACCGCAGATGTAGAGTGGCGC...ACAGAAGCCATCTGGATGATGTGCAAGGCCCTTGAGGTCCAATAAGATGAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp CACCATGCAGACATCTCCCTTATCCTGTCTGGCATGCTTCCTCAGAGGCCTCCTCCCGGCGTAACTCGGTaGGAATCAGCTGGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: HHADISLILSGMLPQRPPPGVTR*ESAGFL
Trigger: AAGAAAACCAGCTGATTCCCACCGAGTTACGCCGGG...AGGAGGCCTCTGAGGAAGCATGCCAGACAGGATAAGGGAGATGTCTGCATGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp TCTACATCTGCGGTGGCCTCCTGCTCCAGTGTGCCCAGGCGAATCATATACAACAAGGTGATGACCCGATaGCTGTCGTCTTTTGGCACG +
Preference number: 4 (lower is better)
Translates to: STSAVASCSSVPRRIIYNKVMTR*LSSFGT
Trigger: CGTGCCAAAAGACGACAGCCATCGGGTCATCACCTT...GTTGTATATGATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR CCA 90 bp TCCTCAACCCCGGCCCATCGATATTCATCATCTACATGGCTGGTTACACCTGGAGGACCTGGAGCCCAGTaGGCACAGAAGTTGGTTCAG +
Preference number: 4 (lower is better)
Translates to: SSTPAHRYSSSTWLVTPGGPGAQ*AQKLVQ
Trigger: CTGAACCAACTTCTGTGCCCACTGGGCTCCAGGTCC...TCCAGGTGTAACCAGCCATGTAGATGATGAATATCGATGGGCCGGGGTTGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR CCA 90 bp CATGACCACGTTACACAGTGTGAAATAGGCAGTAGGACCGAAGGGCAGATGGCTGGACCTGGAGCCCAGTaGGCACAGAAGTTGGTTCAG +
Preference number: 4 (lower is better)
Translates to: HDHVTQCEIGSRTEGQMAGPGAQ*AQKLVQ
Trigger: CTGAACCAACTTCTGTGCCCACTGGGCTCCAGGTCC...AGCCATCTGCCCTTCGGTCCTACTGCCTATTTCACACTGTGTAACGTGGTCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CAA 72 bp CACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTaGTTGAGAATTGGATTCATGAGCTGCAGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: HHTQSHGRIPEA*LRIGFMSCSCG
Trigger: CCCACAACTGCAGCTCATGAATCCAATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR TCA 90 bp TCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTACGCTCCTTCTTCTCCTaGACGGATCGCTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: SKRPSELQKGKTRKETFLRSFFS*TDRCAS
Trigger: GGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGCG...TAGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp TCTATACAAACCCAGGGCCCTTGGGGAAGTTCAGGGTTTTGGATACAGAGAGGACATGCGCTGGGCACCTaGGAACACCAGCTTCAGTTC +
Preference number: 4 (lower is better)
Translates to: SIQTQGPWGSSGFWIQRGHALGT*EHQLQF
Trigger: GAACTGAAGCTGGTGTTCCCAGGTGCCCAGCGCATG...TCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 72 bp ATCCCATCACCAATTCTCTCTGCGAGCTCTAGGGTCTaGACAACCACTCTATACAAACCCAGGGCCCTTGGG +
Preference number: 4 (lower is better)
Translates to: IPSPILSASSRV*TTTLYKPRALG
Trigger: CCCAAGGGCCCTGGGTTTGTATAGAGTGGTTGTCAAGACCCTAGAGCTCGCAGAGAGAATTGGTGATGGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp ATCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTGGACCGAAGGGCAGATaGCTGACAATGAGCCCCACG +
Preference number: 4 (lower is better)
Translates to: IQEALRTPKGQDQKRNLSGPKGR*LTMSPT
Trigger: CGTGGGGCTCATTGTCAGCCATCTGCCCTTCGGTCC...AGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp TCCTCAACCCCGGCCCATCGATATTCATCATCTACATGGCTGGTTACACCTGGAGAAGTTGGTTCAGTGTaGAAGAGGGCTGCAGAGCAC +
Preference number: 4 (lower is better)
Translates to: SSTPAHRYSSSTWLVTPGEVGSV*KRAAEH
Trigger: GTGCTCTGCAGCCCTCTTCCACACTGAACCAACTTC...TCCAGGTGTAACCAGCCATGTAGATGATGAATATCGATGGGCCGGGGTTGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR GCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAAGTGCTCCAACCTCATaGCGACCTCGGTTCATGCGC +
Preference number: 4 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTSAPTS*RPRFMR
Trigger: GCGCATGAACCGAGGTCGGCATGAGGTTGGAGCACT...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp CATGACCACGTTACACAGTGTGAAATAGGCAGTAGGACCGAAGGGCAGATGGCTAGTGTGGAAGAGGGCTaGAGAGCACAGATTACCTTC +
Preference number: 4 (lower is better)
Translates to: HDHVTQCEIGSRTEGQMASVEEG*RAQITF
Trigger: GAAGGTAATCTGTGCTCTGCAGCCCTCTTCCACACT...AGCCATCTGCCCTTCGGTCCTACTGCCTATTTCACACTGTGTAACGTGGTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR CCA 90 bp CACGTTACACAGTGTGAAATAGGCAGTAGGACCGAAGGGCAGATGGCTGACAATGAAGTTGGTTCAGTGTaGAAGAGGGCTGCAGAGCAC +
Preference number: 4 (lower is better)
Translates to: HVTQCEIGSRTEGQMADNEVGSV*KRAAEH
Trigger: GTGCTCTGCAGCCCTCTTCCACACTGAACCAACTTC...ATTGTCAGCCATCTGCCCTTCGGTCCTACTGCCTATTTCACACTGTGTAACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CAA 72 bp ATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACAGTaGGAAGGAGCTAAAGAGTCATGGCTGAGGGTGTAC +
Preference number: 4 (lower is better)
Translates to: ISVCKGLRSWSQ*EGAKESWLRVY
Trigger: GTACACCCTCAGCCATGACTCTTTAGCTCCTTCCAACTGTGACCATGACCTGAGCCCCTTGCAAACACTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp CACCATGCAGACATCTCCCTTATCCTGTCTGGCATGCTTCCTCAGAGGCCTCCTCAGCTTCAGTTCCTTTaGAAACATTTTCAGGCGAGA +
Preference number: 4 (lower is better)
Translates to: HHADISLILSGMLPQRPPQLQFL*KHFQAR
Trigger: TCTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTG...AGGAGGCCTCTGAGGAAGCATGCCAGACAGGATAAGGGAGATGTCTGCATGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACATGGCTTCTGACATGGTaGCCAGGTCAGGGATGTCGT +
Preference number: 4 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTWLLTW*PGQGCR
Trigger: ACGACATCCCTGACCTGGGCACCATGTCAGAAGCCA...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp CATGACCTTAGGATCCTCAACCCCGGCCCATCGATATTCATCATCTACATGGCTTCGGTGGGAATCAGCTaGTTTTCTTCTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: HDLRILNPGPSIFIIYMASVGIS*FSSRAR
Trigger: GCGTGCTCTAGAAGAAAACCAGCTGATTCCCACCGA...AGCCATGTAGATGATGAATATCGATGGGCCGGGGTTGAGGATCCTAAGGTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CAA 72 bp TATACAAACCCAGGGCCCTTGGGGAAGTTCAGGGTTTaGGATACAGAGAGGACAGTAAGTTGCAAACGGCTG +
Preference number: 4 (lower is better)
Translates to: YTNPGPLGKFRV*DTERTVSCKRL
Trigger: CAGCCGTTTGCAACTTACTGTCCTCTCTGTATCCAAAACCCTGAACTTCCCCAAGGGCCCTGGGTTTGTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp CACCATGCAGACATCTCCCTTATCCTGTCTGGCATGCTTCCTCAGAGGCCTCCTTATTCATCATCTACATaGCTGGTTACACCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: HHADISLILSGMLPQRPPYSSST*LVTPSP
Trigger: TGGAGAAGGTGTAACCAGCCATGTAGATGATGAATA...AGGAGGCCTCTGAGGAAGCATGCCAGACAGGATAAGGGAGATGTCTGCATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp GAGGCCCGACCTCAGTCAGCTCCACATTGCGGTGGTCTGTCTTCTTGTAGACATTATTCATCATCTACATaGCTGGTTACACCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: EARPQSAPHCGGLSSCRHYSSST*LVTPSP
Trigger: TGGAGAAGGTGTAACCAGCCATGTAGATGATGAATA...ATGTCTACAAGAAGACAGACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR CCA 90 bp ATCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTAAGGTGATGACCCGATaGCTGTCGTCTTTTGGCACG +
Preference number: 4 (lower is better)
Translates to: IQEALRTPKGQDQKRNLSKVMTR*LSSFGT
Trigger: CGTGCCAAAAGACGACAGCCATCGGGTCATCACCTT...AGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp CCAGAAAAGAAACCTTTCTATCACATCATAATTAAGACACTAAACAGGCAGGACTCTTGCGGGCGGTGTTaGTGTAGGGGTGCCAGCGCC +
Preference number: 4 (lower is better)
Translates to: PEKKPFYHIIIKTLNRQDSCGRC*CRGASA
Trigger: GGCGCTGGCACCCCTACACCAACACCGCCCGCAAGA...GTCCTGCCTGTTTAGTGTCTTAATTATGATGTGATAGAAAGGTTTCTTTTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp GAACACCAGCTTCAGTTCCTTTGCAAACATTTTCAGGCGAGAACTAGGGTCTCTGGAAATTGTCCAGTGTaGCTGAAGAGGACCTGGAGC +
Preference number: 4 (lower is better)
Translates to: EHQLQFLCKHFQARTRVSGNCPV*LKRTWS
Trigger: GCTCCAGGTCCTCTTCAGCCACACTGGACAATTTCC...AGAGACCCTAGTTCTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTGGTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CAA 72 bp TTAATTCAAGCTCCCACTCCTCCCCTCCTCGCTTCATaGTTTCAACCATTCCTTCTACACATGCCCCCTTTG +
Preference number: 4 (lower is better)
Translates to: LIQAPTPPLLAS*FQPFLLHMPPL
Trigger: CAAAGGGGGCATGTGTAGAAGGAATGGTTGAAACAATGAAGCGAGGAGGGGAGGAGTGGGAGCTTGAATTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp ATCCAAGAGGCCCTCAGAACTCCAAAAGGGCAAGACCAGAAAAGAAACCTTTCTCAGTCAGCTCCACATTaGGGTGGTCTGTCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: IQEALRTPKGQDQKRNLSQSAPH*GGLSSC
Trigger: ACAAGAAGACAGACCACCGCAATGTGGAGCTGACTG...AGAAAGGTTTCTTTTCTGGTCTTGCCCTTTTGGAGTTCTGAGGGCCTCTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp TCCTTTGCAAACATTTTCAGGCGAGAACTAGGGTCTCTGGAGGTAGTGATCATGAGTGTGGAAGAGGGCTaGAGAGCACAGATTACCTTC +
Preference number: 4 (lower is better)
Translates to: SFANIFRRELGSLEVVIMSVEEG*RAQITF
Trigger: GAAGGTAATCTGTGCTCTGCAGCCCTCTTCCACACT...CATGATCACTACCTCCAGAGACCCTAGTTCTCGCCTGAAAATGTTTGCAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR CCA 90 bp AGCTTCAGTTCCTTTGCAAACATTTTCAGGCGAGAACTAGGGTCTCTGGAGGTATCGGTGGGAATCAGCTaGTTTTCTTCTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: SFSSFANIFRRELGSLEVSVGIS*FSSRAR
Trigger: GCGTGCTCTAGAAGAAAACCAGCTGATTCCCACCGA...TACCTCCAGAGACCCTAGTTCTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
3UTR CAA 72 bp TCTCCTGGGAAAGAGGGAGGGTGCAGAGAGAATCTCTaGTGTTCTGTATGGAAATATCACTGGTCAATAGAA +
Preference number: 4 (lower is better)
Translates to: SPGKEGGCRENL*CSVWKYHWSIE
Trigger: TTCTATTGACCAGTGATATTTCCATACAGAACACAAGAGATTCTCTCTGCACCCTCCCTCTTTCCCAGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CCA 90 bp CCAGAAAAGAAACCTTTCTATCACATCATAATTAAGACACTAAACAGGCAGGACTCGGTGGGAATCAGCTaGTTTTCTTCTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: PEKKPFYHIIIKTLNRQDSVGIS*FSSRAR
Trigger: GCGTGCTCTAGAAGAAAACCAGCTGATTCCCACCGA...GTCCTGCCTGTTTAGTGTCTTAATTATGATGTGATAGAAAGGTTTCTTTTCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR GCA 90 bp CCAGAAAAGAAACCTTTCTATCACATCATAATTAAGACACTAAACAGGCAGGACGTAGTCATCCTGGTTTaGAAAGGTGATGACCCGATG +
Preference number: 4 (lower is better)
Translates to: PEKKPFYHIIIKTLNRQDVVILV*KGDDPM
Trigger: CATCGGGTCATCACCTTTGCAAACCAGGATGACTAC...GTCCTGCCTGTTTAGTGTCTTAATTATGATGTGATAGAAAGGTTTCTTTTCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 72 bp TCATTGTTTCAACCATTCCTTCTACACATGCCCCCTTaGTGGCAGAAACATCCCCTAATGAATAAAGATTTC +
Preference number: 4 (lower is better)
Translates to: SLFQPFLLHMPP*WQKHPLMNKDF
Trigger: GAAATCTTTATTCATTAGGGGATGTTTCTGCCACAAAGGGGGCATGTGTAGAAGGAATGGTTGAAACAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
3UTR CAA 72 bp GAGAGGAGACTGGAGTCCATTTTTGAGTGTATGTCTTaGAGATTCCTTTTCAGCTTACTCTTAATTCAAGCT +
Preference number: 4 (lower is better)
Translates to: ERRLESIFECMS*RFLFSLLLIQA
Trigger: AGCTTGAATTAAGAGTAAGCTGAAAAGGAATCTCAAAGACATACACTCAAAAATGGACTCCAGTCTCCTCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS GCA 90 bp GCTCCTTCTTCTCCTGAACGGATCGCTGCGCCTCCTCCCGGGCTTTaGGGTACAGGTACTCGCGGCGCAGGCGAGCCTCCCGACGGAGCA +
Preference number: 5 (lower is better)
Translates to: APSSPERIAAPPPGL*GTGTRGAGEPPDGA
Trigger: TGCTCCGTCGGGAGGCTCGCCTGCGCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027303.14
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR CAA 90 bp ACACACACACCACACGCAAAGCCATGGGAGGATCCCAGAGGCCTTGTTGAGAATGCCTCCTCCCGGGCTTaGCGGTACAGGTACTCGCGG +
Preference number: 5 (lower is better)
Translates to: THTPHAKPWEDPRGLVENASSRA*RYRYSR
Trigger: CCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGC...ATTCTCAACAAGGCCTCTGGGATCCTCCCATGGCTTTGCGTGTGGTGTGTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CAA 90 bp CCCAGGCGAATCATATACAACTTGAGCTCAAATCGAGGCCCGACCTCAGTCAGCGCCTCCTCCCGGGCTTaGCGGTACAGGTACTCGCGG +
Preference number: 5 (lower is better)
Translates to: PRRIIYNLSSNRGPTSVSASSRA*RYRYSR
Trigger: CCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGC...GCTGACTGAGGTCGGGCCTCGATTTGAGCTCAAGTTGTATATGATTCGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136770.3
ENSMUST00000149962.8
CDS-3UTR CAA 90 bp CCCCGGCCCATCGATATTCATCATCTACATGGCTGGTTACACCTGGACACTTCCGCCTCCTCCCGGGCTTaGCGGTACAGGTACTCGCGG +
Preference number: 5 (lower is better)
Translates to: PRPIDIHHLHGWLHLDTSASSRA*RYRYSR
Trigger: CCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGC...GGAAGTGTCCAGGTGTAACCAGCCATGTAGATGATGAATATCGATGGGCCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS TCA 90 bp CGACACCGGGTGTGCCTCGATGCTCATGGACCACCAACAGGTCGGTaGCCCCGTTGGCTTTGCAAGCTCTCACTAGTGCTCCAACCTCAT +
Preference number: 5 (lower is better)
Translates to: RHRVCLDAHGPPTGR*PRWLCKLSLVLQPH
Trigger: ATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACACCCGGTGTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS GCA 90 bp CGGGGAATAGGTAACGAAGGATGTCCGACACCGGGTGTGCCTCGATaGTCATGGACCACCAACAGGTCGGTGACCCCGTTGGCTTTGCAA +
Preference number: 5 (lower is better)
Translates to: RGIGNEGCPTPGVPR*SWTTNRSVTPLALQ
Trigger: TTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACACCCGGTGTCGGACATCCTTCGTTACCTATTCCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS-3UTR CAA 90 bp CACGCCTTTAGTCTGAGCACTCATGAGGCAGGGACAGGCCGATCTCTGAGCTCAGTGATGAGGTGGGGCTaGGCTTCTGACATGGTGCCC +
Preference number: 5 (lower is better)
Translates to: HAFSLSTHEAGTGRSLSSVMRWG*ASDMVP
Trigger: GGGCACCATGTCAGAAGCCAAGCCCCACCTCATCAC...TGAGCTCAGAGATCGGCCTGTCCCTGCCTCATGAGTGCTCAGACTAAAGGCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS TCA 90 bp AGCTGGTTTTCTTCTAGAGCACGCTTGACTCGCTCCTTCTTCTCCTaGACGGATCGCTGCGCCTCCTCCCGGGCTTTGCGGTACAGGTAC +
Preference number: 5 (lower is better)
Translates to: SWFSSRARLTRSFFS*TDRCASSRALRYRY
Trigger: GTACCTGTACCGCAAAGCCCGGGAGGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGCGAGTCAAGCGTGCTCTAGAAGAAAACCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027303.14
ENSMUST00000136770.3
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS CCA 90 bp ATAGGTAACGAAGGATGTCCGACACCGGGTGTGCCTCGATGCTCATaGACCACCAACAGGTCGGTGACCCCGTTGGCTTTGCAAGCTCTC +
Preference number: 5 (lower is better)
Translates to: IGNEGCPTPGVPRCS*TTNRSVTPLALQAL
Trigger: GAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACACCCGGTGTCGGACATCCTTCGTTACCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS CCA 90 bp CTGAAGAGGACCTGGAGCCCAGTGGGCACAGAAGTTGGTTCAGTGTaGAAGAGGGCTGCAGAGCACAGATTACCTTCTCCACCAGCATCA +
Preference number: 5 (lower is better)
Translates to: LKRTWSPVGTEVGSV*KRAAEHRLPSPPAS
Trigger: TGATGCTGGTGGAGAAGGTAATCTGTGCTCTGCAGCCCTCTTCCACACTGAACCAACTTCTGTGCCCACTGGGCTCCAGGTCCTCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR CAA 90 bp TCCTTTGCAAACATTTTCAGGCGAGAACTAGGGTCTCTGGAGGTAGTGATCATGGCCTCCTCCCGGGCTTaGCGGTACAGGTACTCGCGG +
Preference number: 5 (lower is better)
Translates to: SFANIFRRELGSLEVVIMASSRA*RYRYSR
Trigger: CCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGC...CATGATCACTACCTCCAGAGACCCTAGTTCTCGCCTGAAAATGTTTGCAAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS-3UTR CAA 90 bp CACGCCTTTAGTCTGAGCACTCATGAGGCAGGGACAGGCCGATCTCTGAGCTCACCAGCTTCAGTTCCTTaGCAAACATTTTCAGGCGAG +
Preference number: 5 (lower is better)
Translates to: HAFSLSTHEAGTGRSLSSPASVP*QTFSGE
Trigger: CTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTGG...TGAGCTCAGAGATCGGCCTGTCCCTGCCTCATGAGTGCTCAGACTAAAGGCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS-3UTR CAA 90 bp TTGAAGAGACCAAAAGTAGATCAGTGTTTGCAAGGGGCTCAGGTCATGGTCACATCAGTCAGCTCCACATaGCGGTGGTCTGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: LKRPKVDQCLQGAQVMVTSVSST*RWSVFL
Trigger: CAAGAAGACAGACCACCGCAATGTGGAGCTGACTGA...TGTGACCATGACCTGAGCCCCTTGCAAACACTGATCTACTTTTGGTCTCTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027303.14
CDS GCA 72 bp TCTCCTGAACGGATCGCTGCGCCTCCTCCCGGGCTTTaGGGTACAGGTACTCGCGGCGCAGGCGAGCCTCCC +
Preference number: 6 (lower is better)
Translates to: SPERIAAPPPGL*GTGTRGAGEPP
Trigger: GGGAGGCTCGCCTGCGCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGCGCAGCGATCCGTTCAGGAGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027303.14
ENSMUST00000136770.3
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS TCA 72 bp TCTTCTAGAGCACGCTTGACTCGCTCCTTCTTCTCCTaGACGGATCGCTGCGCCTCCTCCCGGGCTTTGCGG +
Preference number: 6 (lower is better)
Translates to: SSRARLTRSFFS*TDRCASSRALR
Trigger: CCGCAAAGCCCGGGAGGAGGCGCAGCGATCCGTTCAGGAGAAGAAGGAGCGAGTCAAGCGTGCTCTAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027303.14
ENSMUST00000136770.3
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS CCA 72 bp GAAGGATGTCCGACACCGGGTGTGCCTCGATGCTCATaGACCACCAACAGGTCGGTGACCCCGTTGGCTTTG +
Preference number: 6 (lower is better)
Translates to: EGCPTPGVPRCS*TTNRSVTPLAL
Trigger: CAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCATGAGCATCGAGGCACACCCGGTGTCGGACATCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136770.3
CDS CCA 72 bp ACCTGGAGCCCAGTGGGCACAGAAGTTGGTTCAGTGTaGAAGAGGGCTGCAGAGCACAGATTACCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: TWSPVGTEVGSV*KRAAEHRLPSP
Trigger: TGGAGAAGGTAATCTGTGCTCTGCAGCCCTCTTCCACACTGAACCAACTTCTGTGCCCACTGGGCTCCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000137794.8
ENSMUST00000149962.8
CDS CCA 72 bp TCCTCAACCCCGGCCCATCGATATTCATCATCTACATaGCTGGTTACACCTTCTCCACCAGCATCATCGAAC +
Preference number: 6 (lower is better)
Translates to: SSTPAHRYSSST*LVTPSPPASSN
Trigger: GTTCGATGATGCTGGTGGAGAAGGTGTAACCAGCCATGTAGATGATGAATATCGATGGGCCGGGGTTGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027303.14
ENSMUST00000136770.3