Pregenerated sensors for IMP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032288Ensembl transcript IDs: ENSMUST00000034827.10
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTTTAAGGCACAAGAAGCTAGCAATCCCCAGTGCGGTACAAAACTaGTTCCCACTGTCTCTCAAGACACAGTCACTTAATTGTCAGTCC | + |
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Preference number: 1 (lower is better) Translates to: SLRHKKLAIPSAVQN*FPLSLKTQSLNCQS Trigger: GGACTGACAATTAAGTGACTGTGTCTTGAGAGACAGTGGGAAGCAGTTTTGTACCGCACTGGGGATTGCTAGCTTCTTGTGCCTTAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| 3UTR-3UTR TCA 90 bp | ATTCCTGCTTCTACACCACAAAGTTTAAGGCACAAGAAGCTAGCAATCCCCAGTCCATCCCCGGTTCAGTaGCCTGTAGCTGAGAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: IPASTPQSLRHKKLAIPSPSPVQ*PVAEKP Trigger: TGGCTTCTCAGCTACAGGTCACTGAACCGGGGATGG...ACTGGGGATTGCTAGCTTCTTGTGCCTTAAACTTTGTGGTGTAGAAGCAGGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| 3UTR-3UTR TCA 90 bp | GGAAGAGGTAACATTCCTGCTTCTACACCACAAAGTTTAAGGCACAAGAAGCTATCAGTGACCTGTAGCTaGGAAGCCAGGACAAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: GRGNIPASTPQSLRHKKLSVTCS*EARTRR Trigger: TCTTCTTGTCCTGGCTTCTCAGCTACAGGTCACTGA...TAGCTTCTTGTGCCTTAAACTTTGTGGTGTAGAAGCAGGAATGTTACCTCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| 3UTR GCA 72 bp | CACAAGAAGCTAGCAATCCCCAGTGCGGTACAAAACTaGTTCCCACTGTCTCTCAAGACACAGTCACTTAAT | + |
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Preference number: 3 (lower is better) Translates to: HKKLAIPSAVQN*FPLSLKTQSLN Trigger: ATTAAGTGACTGTGTCTTGAGAGACAGTGGGAAGCAGTTTTGTACCGCACTGGGGATTGCTAGCTTCTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| 3UTR TCA 72 bp | ACTCAAACTCTCCATCCAGACGGTCCTATTTCAAGATaGAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: TQTLHPDGPISR*KQRGRGNIPAS Trigger: AGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGACCGTCTGGATGGAGAGTTTGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CCA 90 bp | GGAAGAGGTAACATTCCTGCTTCTACACCACAAAGTTTAAGGCACAAGAAGCTAGGCGCGCACGCGGAATaGGTCGCGTTCCGGCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GRGNIPASTPQSLRHKKLGAHAE*VAFRQV Trigger: GACCTGCCGGAACGCGACCCATTCCGCGTGCGCGCC...TAGCTTCTTGTGCCTTAAACTTTGTGGTGTAGAAGCAGGAATGTTACCTCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR TCA 90 bp | AGTTTAAGGCACAAGAAGCTAGCAATCCCCAGTGCGGTACAAAACTGCTTCCCACCTCCATGCTGCGAGTaGCGAGAAAGGCGGGATCAG | + |
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Preference number: 4 (lower is better) Translates to: SLRHKKLAIPSAVQNCFPPPCCE*RERRDQ Trigger: CTGATCCCGCCTTTCTCGTCACTCGCAGCATGGAGG...TGGGAAGCAGTTTTGTACCGCACTGGGGATTGCTAGCTTCTTGTGCCTTAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR TCA 90 bp | GGAAGAGGTAACATTCCTGCTTCTACACCACAAAGTTTAAGGCACAAGAAGCTAGGGCCCACGCGGACATaGCCCTGCTCCACAAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: GRGNIPASTPQSLRHKKLGPTRT*PCSTKA Trigger: GGCTTTTGTGGAGCAGGGTCATGTCCGCGTGGGCCC...TAGCTTCTTGTGCCTTAAACTTTGTGGTGTAGAAGCAGGAATGTTACCTCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR TCA 90 bp | ACGGTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTACCAACACGTGCCGCTTaGTCTTGGATGAGTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: TVLFQDESKGEEVTFLLLPTRAA*SWMSPP Trigger: GGGTGGACTCATCCAAGATCAAGCGGCACGTGTTGG...TAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGACCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CCA 90 bp | ACGGTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTAAGCACACGCAGTTCGTaGAGGTTGTGGTCGGTGACT | + |
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Preference number: 4 (lower is better) Translates to: TVLFQDESKGEEVTFLLLSTRSS*RLWSVT Trigger: AGTCACCGACCACAACCTCCACGAACTGCGTGTGCT...TAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGACCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CCA 90 bp | GTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTACACAAAGCCACAGCAGCTTaGAGATGCTGCGCCATGCGT | + |
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Preference number: 4 (lower is better) Translates to: VLFQDESKGEEVTFLLLHKATAA*RCCAMR Trigger: ACGCATGGCGCAGCATCTCCAAGCTGCTGTGGCTTT...GTGTAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR TCA 90 bp | ACGGTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTAGGAGGTTGTGGTCGGTaGCTTCCCAGTTTAGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: TVLFQDESKGEEVTFLLLGGCGR*LPSLGS Trigger: ACTTCCTAAACTGGGAAGTCACCGACCACAACCTCC...TAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGACCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR GCA 90 bp | AAACTCTCCATCCAGACGGTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTATTGTACTCCAACACGTaGCGCTTGATCTTGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: KLSIQTVLFQDESKGEEVLYSNT*RLILDE Trigger: CTCATCCAAGATCAAGCGGCACGTGTTGGAGTACAA...TACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGACCGTCTGGATGGAGAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CAA 90 bp | GTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTACACCGCAGTTCGTGGAGGTaGTGGTCGGTGACTTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VLFQDESKGEEVTFLLLHRSSWR*WSVTSQ Trigger: CTGGGAAGTCACCGACCACAACCTCCACGAACTGCG...GTGTAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CAA 90 bp | AAACTCTCCATCCAGACGGTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACGTGCCGCTTGATCTaGGATGAGTCCACCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: KLSIQTVLFQDESKGEEVTCRLI*DESTQV Trigger: CACCTGGGTGGACTCATCCAAGATCAAGCGGCACGT...TACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGACCGTCTGGATGGAGAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CAA 90 bp | TACACCACAAAGTTTAAGGCACAAGAAGCTAGCAATCCCCAGTGCGGTACAAAATCATCGCGCTCCTCATaGTACTCCAACACGTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: YTTKFKAQEASNPQCGTKSSRSS*YSNTCR Trigger: GCGGCACGTGTTGGAGTACAATGAGGAGCGCGATGA...TTTTGTACCGCACTGGGGATTGCTAGCTTCTTGTGCCTTAAACTTTGTGGTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CAA 90 bp | GTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTACACAAAAGCCACAGCAGCTaGGAGATGCTGCGCCATGCG | + |
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Preference number: 5 (lower is better) Translates to: VLFQDESKGEEVTFLLLHKSHSS*EMLRHA Trigger: CGCATGGCGCAGCATCTCCAAGCTGCTGTGGCTTTT...GTGTAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CAA 90 bp | GTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTACACTGCGCCATGCGTAGCTaGAGGAGCAAAGTAGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: VLFQDESKGEEVTFLLLHCAMRS*RSKVGK Trigger: CTTGCCTACTTTGCTCCTCAAGCTACGCATGGCGCA...GTGTAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS-3UTR CAA 90 bp | GTCCTATTTCAAGATGAAAGCAAAGGGGAAGAGGTAACATTCCTGCTTCTACACTCCAACACGTGCCGCTaGATCTTGGATGAGTCCACC | + |
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Preference number: 5 (lower is better) Translates to: VLFQDESKGEEVTFLLLHSNTCR*ILDEST Trigger: GGTGGACTCATCCAAGATCAAGCGGCACGTGTTGGA...GTGTAGAAGCAGGAATGTTACCTCTTCCCCTTTGCTTTCATCTTGAAATAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS CCA 72 bp | CTTGTCCAACAGCGCCGCCGAGGCGCGCACGCGGAATaGGTCGCGTTCCGGCAGGTCGCGCAGGCGCCGCGC | + |
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Preference number: 6 (lower is better) Translates to: LVQQRRRGAHAE*VAFRQVAQAPR Trigger: GCGCGGCGCCTGCGCGACCTGCCGGAACGCGACCCATTCCGCGTGCGCGCCTCGGCGGCGCTGTTGGACAAG 76% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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| CDS CCA 72 bp | CGCTGCAGCCGGTACCGCCGCAGCACACGCAGTTCGTaGAGGTTGTGGTCGGTGACTTCCCAGTTTAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RCSRYRRSTRSS*RLWSVTSQFRK Trigger: CTTCCTAAACTGGGAAGTCACCGACCACAACCTCCACGAACTGCGTGTGCTGCGGCGGTACCGGCTGCAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034827.10 |
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