RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IMMT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052337

Ensembl transcript IDs: ENSMUST00000064062.13, ENSMUST00000101301.10, ENSMUST00000114151.10, ENSMUST00000165331.8, ENSMUST00000166938.8, ENSMUST00000166975.8, ENSMUST00000171057.2, ENSMUST00000207003.2

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp ACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTaGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATATG +
Preference number: 2 (lower is better)
Translates to: TQDLEPAHFWTILGP*LQTLQIPMLIFFDM
Trigger: CATATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
3UTR-3UTR GCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTCAGCCAGTCCTGTaGCACTCTTCTGGACTCCCC +
Preference number: 2 (lower is better)
Translates to: PFILMEMTCSSVLSSSELLQPVL*HSSGLP
Trigger: GGGGAGTCCAGAAGAGTGGCACAGGACTGGCTGAAG...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR CAA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTaGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATATGAAA +
Preference number: 2 (lower is better)
Translates to: QDLEPAHFWTILGPL*QTLQIPMLIFFDMK
Trigger: TTTCATATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
3UTR-3UTR TCA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAGACTCCCCTTTGAGCTaGTTGACAAACTTTGCTGCC +
Preference number: 2 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKDSPLS*LTNFAA
Trigger: GGCAGCAAAGTTTGTCAATCAGCTCAAAGGGGAGTC...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR TCA 90 bp ACTGAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAACTCTTGCTGCACTTaGGTGGTTCCTATTCCTACG +
Preference number: 2 (lower is better)
Translates to: TEFKRVTLKLVGLLIWDLNSCCT*VVPIPT
Trigger: CGTAGGAATAGGAACCACTCAAGTGCAGCAAGAGTT...CAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR GCA 90 bp ACTGAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGATTGACAAACTTTGCTaGCAGCTCCAGGTCACCATG +
Preference number: 2 (lower is better)
Translates to: TEFKRVTLKLVGLLIWDLIDKLC*QLQVTM
Trigger: CATGGTGACCTGGAGCTGGCAGCAAAGTTTGTCAAT...CAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR CCA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAAACTGCACTCCCCAATaGGATGGTAGGCATTTCTGC +
Preference number: 2 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKNCTPQ*DGRHFC
Trigger: GCAGAAATGCCTACCATCCCATTGGGGAGTGCAGTT...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR CAA 90 bp AATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTaGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACTGCTTTT +
Preference number: 2 (lower is better)
Translates to: NGDDLFFCTEFKRVT*KLVGLLIWDLKTAF
Trigger: AAAAGCAGTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR CCA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAGGTACAGGCTATTTCTaGTTTCGTCAATCATCGCTA +
Preference number: 2 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKGTGYF*FRQSSL
Trigger: TAGCGATGATTGACGAAACCAGAAATAGCCTGTACC...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR TCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTATACTCATTTGGGATTTaGAGACTGCTTTTATCCAGA +
Preference number: 2 (lower is better)
Translates to: PFILMEMTCSSVLSSSELYSFGI*RLLLSR
Trigger: TCTGGATAAAAGCAGTCTTCAAATCCCAAATGAGTA...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR TCA 72 bp CAGTCCTGTGCCACTCTTCTGGACTCCCCTTTGAGCTaGTTGACAAACTTTGCTGCCAGCTCCAGGTCACCA +
Preference number: 3 (lower is better)
Translates to: QSCATLLDSPLS*LTNFAASSRSP
Trigger: TGGTGACCTGGAGCTGGCAGCAAAGTTTGTCAATCAGCTCAAAGGGGAGTCCAGAAGAGTGGCACAGGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166975.8
ENSMUST00000207003.2
3UTR-3UTR CAA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAACGCCGGGGGCTTCAGTaGCTTAGGCGGGAACAGGAG +
Preference number: 3 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKRRGLQ*LRREQE
Trigger: CTCCTGTTCCCGCCTAAGCAACTGAAGCCCCCGGCG...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR CAA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACTTTTATCCAGAACTCTaGCTGCACTTGAGTGGTTCC +
Preference number: 3 (lower is better)
Translates to: VQASYFETGRITHLGFEDFYPEL*LHLSGS
Trigger: GGAACCACTCAAGTGCAGCAAGAGTTCTGGATAAAA...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR-3UTR CAA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTAGGTAGGATTACTCATTaGGGATTTGAAGACTGCTTT +
Preference number: 3 (lower is better)
Translates to: PFILMEMTCSSVLSSSELGRITH*GFEDCF
Trigger: AAAGCAGTCTTCAAATCCCAAATGAGTAATCCTACC...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCGTGTGGGCAGCTGCCTaGCGTCGAAGTTGGGTCCGC +
Preference number: 4 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTVWAAA*RRSWVR
Trigger: GCGGACCCAACTTCGACGGCAGGCAGCTGCCCACAC...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGTGTGGGCAGCTGCCTaGCGTCGAAGTTGGGTCCGC +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPVWAAA*RRSWVR
Trigger: GCGGACCCAACTTCGACGGCAGGCAGCTGCCCACAC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCGTGTGGGCAGCTGCCTaGCGTCGAAGTTGGGTCCGC +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCVWAAA*RRSWVR
Trigger: GCGGACCCAACTTCGACGGCAGGCAGCTGCCCACAC...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACGTGTGGGCAGCTGCCTaGCGTCGAAGTTGGGTCCGC +
Preference number: 4 (lower is better)
Translates to: NLLTSGQFWDPCCKPCRYVWAAA*RRSWVR
Trigger: GCGGACCCAACTTCGACGGCAGGCAGCTGCCCACAC...GTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGCTTCAGCCAGTCCTGTaGCACTCTTCTGGACTCCCC +
Preference number: 4 (lower is better)
Translates to: LEPAHFWTILGPLLQTLQLQPVL*HSSGLP
Trigger: GGGGAGTCCAGAAGAGTGGCACAGGACTGGCTGAAG...CTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR TCA 90 bp ACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCCCCTGTAGATGCTGCTaGAGCTGGAGTGTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: TCSLLDNSGTLVANPADTPCRCC*SWSVSL
Trigger: AAGGGAGACACTCCAGCTTCAGCAGCATCTACAGGG...GGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR TCA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGTGTGCCTTGACAGCCTaGACTGCAGCATTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLCALTA*TAAFWA
Trigger: AGCCCAGAATGCTGCAGTTCAGGCTGTCAAGGCACA...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACATCAGTGTGGGCAGCTaGCTGCCGTCGAAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANISVGS*LPSKLG
Trigger: ACCCAACTTCGACGGCAGGCAGCTGCCCACACTGAT...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAATAGTGTCCTCATGCTaGACTGCAGGGGCCGGGACC +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATIVSSC*TAGAGT
Trigger: GGTCCCGGCCCCTGCAGTTCAGCATGAGGACACTAT...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
CDS-3UTR TCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTGTGCCTTGACAGCCTaGACTGCAGCATTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMCALTA*TAAFWA
Trigger: AGCCCAGAATGCTGCAGTTCAGGCTGTCAAGGCACA...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGTGTTGGAGTGTGCCTTaGCAGCCTGAACTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLCWSVP*QPELQH
Trigger: ATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACA...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCTGTTGGAGTGTGCCTTaGCAGCCTGAACTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTCWSVP*QPELQH
Trigger: ATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACA...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp ACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCTCTGCAGCAGTTATATaGGGGGTGGCTCCAGCAATC +
Preference number: 4 (lower is better)
Translates to: TCSLLDNSGTLVANPADTSAAVI*GVAPAI
Trigger: GATTGCTGGAGCCACCCCTCATATAACTGCTGCAGA...GGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCATCTGCAGCAGTTATATaGGGGGTGGCTCCAGCAATC +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPSAAVI*GVAPAI
Trigger: GATTGCTGGAGCCACCCCTCATATAACTGCTGCAGA...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCATCTTCGCTCCTTCAATaGACCCTCCACTGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPSSLLQ*TLHCSP
Trigger: TGGCGAACAGTGGAGGGTGCATTGAAGGAGCGAAGA...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGTCTTCGCTCCTTCAATaGACCCTCCACTGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: LEPAHFWTILGPLLQTLQSSLLQ*TLHCSP
Trigger: TGGCGAACAGTGGAGGGTGCATTGAAGGAGCGAAGA...CTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGTTGGAGTGTGCCTTaGCAGCCTGAACTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCCWSVP*QPELQH
Trigger: ATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACA...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTGTTGGAGTGTGCCTTaGCAGCCTGAACTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMCWSVP*QPELQH
Trigger: ATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACA...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAACTCTTCTTTTGCTTTaGGCAGGGCATCGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPTLLLL*AGHRQL
Trigger: AAGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGT...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGACTCTTCTTTTGCTTTaGGCAGGGCATCGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: LEPAHFWTILGPLLQTLQTLLLL*AGHRQL
Trigger: AAGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGT...CTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTCTGCAGCAGTTATATaGGGGGTGGCTCCAGCAATC +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMSAAVI*GVAPAI
Trigger: GATTGCTGGAGCCACCCCTCATATAACTGCTGCAGA...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAGACTCCCCTTTGAGCTaGTTGACAAACTTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPDSPLS*LTNFAA
Trigger: GGCAGCAAAGTTTGTCAATCAGCTCAAAGGGGAGTC...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTCTTCGCTCCTTCAATaGACCCTCCACTGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCSSLLQ*TLHCSP
Trigger: TGGCGAACAGTGGAGGGTGCATTGAAGGAGCGAAGA...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACTCTTCGCTCCTTCAATaGACCCTCCACTGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANSSLLQ*TLHCSP
Trigger: TGGCGAACAGTGGAGGGTGCATTGAAGGAGCGAAGA...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTATCAGTGTGGGCAGCTaGCTGCCGTCGAAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: FWTILGPLLQTLQIPMLIISVGS*LPSKLG
Trigger: ACCCAACTTCGACGGCAGGCAGCTGCCCACACTGAT...AATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCATCAGTGTGGGCAGCTaGCTGCCGTCGAAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFISVGS*LPSKLG
Trigger: ACCCAACTTCGACGGCAGGCAGCTGCCCACACTGAT...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCGTGCCACAGGCAGTTTaGAGTCTTTCATCACCTCTG +
Preference number: 4 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTVPQAV*SLSSPL
Trigger: CAGAGGTGATGAAAGACTCCAAACTGCCTGTGGCAC...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGTGCCACAGGCAGTTTaGAGTCTTTCATCACCTCTG +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPVPQAV*SLSSPL
Trigger: CAGAGGTGATGAAAGACTCCAAACTGCCTGTGGCAC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAAACTGCACTCCCCAATaGGATGGTAGGCATTTCTGC +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPNCTPQ*DGRHFC
Trigger: GCAGAAATGCCTACCATCCCATTGGGGAGTGCAGTT...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCTTGCTGCACTTGAGTaGTTCCTATTCCTACGGCGC +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANLAALE*FLFLRR
Trigger: GCGCCGTAGGAATAGGAACCACTCAAGTGCAGCAAG...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCCTTGCTGCACTTGAGTaGTTCCTATTCCTACGGCGC +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCLAALE*FLFLRR
Trigger: GCGCCGTAGGAATAGGAACCACTCAAGTGCAGCAAG...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR TCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATATAGTGTCCTCATGCTaGACTGCAGGGGCCGGGACC +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDIVSSC*TAGAGT
Trigger: GGTCCCGGCCCCTGCAGTTCAGCATGAGGACACTAT...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
CDS-3UTR TCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACACTCTTCTTTTGCTTTaGGCAGGGCATCGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANTLLLL*AGHRQL
Trigger: AAGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGT...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTCAGCCTGGACCTTTTTaGCGACGTTATCCAGATCAA +
Preference number: 4 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPQPGPF*RRYPDQ
Trigger: TTGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTG...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGGCATGAGCAATGAGTaGGTTCAGGTCATCAGTAGA +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPGMSNE*VQVISR
Trigger: TCTACTGATGACCTGAACTCACTCATTGCTCATGCC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGGGCATGAGCAATGAGTaGGTTCAGGTCATCAGTAGA +
Preference number: 4 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLGMSNE*VQVISR
Trigger: TCTACTGATGACCTGAACTCACTCATTGCTCATGCC...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCCTGTTCCTGCACCTTaGGGACATCTCGTAAATGAT +
Preference number: 4 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTPVPAP*GHLVND
Trigger: ATCATTTACGAGATGTCCTCAAGGTGCAGGAACAGG...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGTCCATTTGTTCTTaGCTGCGACGACGAAACTCT +
Preference number: 4 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTLSICS*LRRRNS
Trigger: AGAGTTTCGTCGTCGCAGTCAAGAACAAATGGACAG...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTTACTCTTGCTGCACTTaGGTGGTTCCTATTCCTACG +
Preference number: 4 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPYSCCT*VVPIPT
Trigger: CGTAGGAATAGGAACCACTCAAGTGCAGCAAGAGTA...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp ACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCTCTTGCTTTTCCTGTTaGGCTAGACGAGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: TCSLLDNSGTLVANPADTSCFSC*ARRAAT
Trigger: AGTTGCAGCTCGTCTAGCGCAACAGGAAAAGCAAGA...GGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR GCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCACTTGACAGCCTGAACTaGAGCATTCTGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPLDSLN*SILGCN
Trigger: ATTACAGCCCAGAATGCTGCAGTTCAGGCTGTCAAG...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCCTTGACAGCCTGAACTaGAGCATTCTGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPLDSLN*SILGCN
Trigger: ATTACAGCCCAGAATGCTGCAGTTCAGGCTGTCAAG...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCTAGCTCAATGTGCTaGTTCTCTGTGGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPASSMC*FSVAFC
Trigger: ACAGAAAGCCACAGAGAAGCAGCACATTGAGCTAGC...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTAAGGCTAGCTCAATGTaGTGCTTCTCTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPKASSM*CFSVAF
Trigger: GAAAGCCACAGAGAAGCAGCACATTGAGCTAGCCTT...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCAAGGCTAGCTCAATGTaGTGCTTCTCTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTKASSM*CFSVAF
Trigger: GAAAGCCACAGAGAAGCAGCACATTGAGCTAGCCTT...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAAGGCTAGCTCAATGTaGTGCTTCTCTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: TCSLLDNSGTLVANPADTKASSM*CFSVAF
Trigger: GAAAGCCACAGAGAAGCAGCACATTGAGCTAGCCTT...GGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGTGCTCCAATGCTTTTaGCACTGCAGAGTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPVLQCF*HCRVKG
Trigger: ACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCAC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTCTGTGGTGCTCCAATaGTTTTGCCACTGCAGAGTC +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMSVVLQ*FCHCRV
Trigger: GACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGA...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGGTGTGGGCAGCTGCCTaGCGTCGAAGTTGGGTCCGC +
Preference number: 4 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKVWAAA*RRSWVR
Trigger: GCGGACCCAACTTCGACGGCAGGCAGCTGCCCACAC...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CCA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCATGTGCTGCTTCTCTGTaGCTTTCTGTTGTGCTAGCT +
Preference number: 4 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPCAASL*LSVVLA
Trigger: AGCTAGCACAACAGAAAGCCACAGAGAAGCAGCACA...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACATCTGCAGCAGTTATATaGGGGGTGGCTCCAGCAATC +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATSAAVI*GVAPAI
Trigger: GATTGCTGGAGCCACCCCTCATATAACTGCTGCAGA...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTTCAACTATCATGTTGTaGAGTCTCCCCTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SHTGLGTCSLLDNSGTLVSTIML*SLPSAA
Trigger: TGCTGCAGAGGGGAGACTTCACAACATGATAGTTGA...AACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTCAACTATCATGTTGTaGAGTCTCCCCTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMSTIML*SLPSAA
Trigger: TGCTGCAGAGGGGAGACTTCACAACATGATAGTTGA...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTCAGCCTGGACCTTTTTaGCGACGTTATCCAGATCAA +
Preference number: 4 (lower is better)
Translates to: SHTGLGTCSLLDNSGTLVQPGPF*RRYPDQ
Trigger: TTGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTG...AACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGGGCTGTAATAGTCTaGAGAGTGACAGACGAAGTC +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCWAVIV*RVTDEV
Trigger: GACTTCGTCTGTCACTCTGCAGACTATTACAGCCCA...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTCTTGACAGCCTGAACTaGAGCATTCTGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: SHTGLGTCSLLDNSGTLVLDSLN*SILGCN
Trigger: ATTACAGCCCAGAATGCTGCAGTTCAGGCTGTCAAG...AACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGGTGCTCCAATGCTTTTaGCACTGCAGAGTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMVLQCF*HCRVKG
Trigger: ACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCAC...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATTCTGTGGTGCTCCAATaGTTTTGCCACTGCAGAGTC +
Preference number: 4 (lower is better)
Translates to: CSLLDNSGTLVANPADTNSVVLQ*FCHCRV
Trigger: GACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGA...ATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATATCAGTGTGGGCAGCTaGCTGCCGTCGAAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDISVGS*LPSKLG
Trigger: ACCCAACTTCGACGGCAGGCAGCTGCCCACACTGAT...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGTTCTTCTTCAGCAACTaGATGACTCTGAACAGCCTG +
Preference number: 4 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLFFFSN*MTLNSL
Trigger: CAGGCTGTTCAGAGTCATGCAGTTGCTGAAGAAGAA...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTTCTTCTTCAGCAACTaGATGACTCTGAACAGCCTG +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPFFFSN*MTLNSL
Trigger: CAGGCTGTTCAGAGTCATGCAGTTGCTGAAGAAGAA...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp AACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACATTGACAAACTTTGCTaGCAGCTCCAGGTCACCATG +
Preference number: 4 (lower is better)
Translates to: NLLTSGQFWDPCCKPCRYIDKLC*QLQVTM
Trigger: CATGGTGACCTGGAGCTGGCAGCAAAGTTTGTCAAT...GTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATCTTCAGCCAGTCCTGTaGCACTCTTCTGGACTCCCC +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDLQPVL*HSSGLP
Trigger: GGGGAGTCCAGAAGAGTGGCACAGGACTGGCTGAAG...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGTGCAACTTCTTCGGGTaGTCGCTCCCTTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGCNFFG*SLPYRR
Trigger: TCTTCTGTAAGGGAGCGACCACCCGAAGAAGTTGCA...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR CCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCCAGTTATATGAGGGGTaGCTCCAGCAATCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPQLYEG*LQQSLF
Trigger: AAAGAGAGATTGCTGGAGCCACCCCTCATATAACTG...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTGTGCTGCTTCTCTGTaGCTTTCTGTTGTGCTAGCT +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMCAASL*LSVVLA
Trigger: AGCTAGCACAACAGAAAGCCACAGAGAAGCAGCACA...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACTGTGCTGCTTCTCTGTaGCTTTCTGTTGTGCTAGCT +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANCAASL*LSVVLA
Trigger: AGCTAGCACAACAGAAAGCCACAGAGAAGCAGCACA...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGGCTGCAGAAATAATTTaGGCTGCCCCTGTAGATGCT +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGAAEII*AAPVDA
Trigger: AGCATCTACAGGGGCAGCTCAAATTATTTCTGCAGC...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR TCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATTGTGCCTTGACAGCCTaGACTGCAGCATTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDCALTA*TAAFWA
Trigger: AGCCCAGAATGCTGCAGTTCAGGCTGTCAAGGCACA...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCACTCTTCTTTTGCTTTaGGCAGGGCATCGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFTLLLL*AGHRQL
Trigger: AAGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGT...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTTCAACTATCATGTTGTaGAGTCTCCCCTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SLLDNSGTLVANPADTNASTIML*SLPSAA
Trigger: TGCTGCAGAGGGGAGACTTCACAACATGATAGTTGA...AGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGTCAACTATCATGTTGTaGAGTCTCCCCTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGSTIML*SLPSAA
Trigger: TGCTGCAGAGGGGAGACTTCACAACATGATAGTTGA...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTCCTGTTCCTGCACCTTaGGGACATCTCGTAAATGAT +
Preference number: 4 (lower is better)
Translates to: SLLDNSGTLVANPADTNAPVPAP*GHLVND
Trigger: ATCATTTACGAGATGTCCTCAAGGTGCAGGAACAGG...AGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGCCTGTTCCTGCACCTTaGGGACATCTCGTAAATGAT +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGPVPAP*GHLVND
Trigger: ATCATTTACGAGATGTCCTCAAGGTGCAGGAACAGG...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCGACTCCCCTTTGAGCTaGTTGACAAACTTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFDSPLS*LTNFAA
Trigger: GGCAGCAAAGTTTGTCAATCAGCTCAAAGGGGAGTC...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCGACTTCTTCTCACCTaGAATCTCAGAATTGTCCAT +
Preference number: 4 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLRLLLT*NLRIVH
Trigger: ATGGACAATTCTGAGATTGCAGGTGAGAAGAAGTCG...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAGTGAAGTCTCCCCTCTaGAGCAGTTATATGAGGGGT +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATVKSPL*SSYMRG
Trigger: ACCCCTCATATAACTGCTGCAGAGGGGAGACTTCAC...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGGCTAGCTCAATGTGCTaGTTCTCTGTGGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGASSMC*FSVAFC
Trigger: ACAGAAAGCCACAGAGAAGCAGCACATTGAGCTAGC...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGTGCTCCAATGCTTTTaGCACTGCAGAGTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: SLLDNSGTLVANPADTNAVLQCF*HCRVKG
Trigger: ACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCAC...AGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGTGCTCCAATGCTTTTaGCACTGCAGAGTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: CSLLDNSGTLVANPADTNVLQCF*HCRVKG
Trigger: ACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCAC...ATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTCTGTGGTGCTCCAATaGTTTTGCCACTGCAGAGTC +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFSVVLQ*FCHCRV
Trigger: GACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGA...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTTCTTCTTCAGCAACTaGATGACTCTGAACAGCCTG +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCFFFSN*MTLNSL
Trigger: CAGGCTGTTCAGAGTCATGCAGTTGCTGAAGAAGAA...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGATTGACAAACTTTGCTaGCAGCTCCAGGTCACCATG +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGIDKLC*QLQVTM
Trigger: CATGGTGACCTGGAGCTGGCAGCAAAGTTTGTCAAT...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAGTGCCACAGGCAGTTTaGAGTCTTTCATCACCTCTG +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATVPQAV*SLSSPL
Trigger: CAGAGGTGATGAAAGACTCCAAACTGCCTGTGGCAC...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCAGTTATATGAGGGGTaGCTCCAGCAATCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMQLYEG*LQQSLF
Trigger: AAAGAGAGATTGCTGGAGCCACCCCTCATATAACTG...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCAGTTATATGAGGGGTaGCTCCAGCAATCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANQLYEG*LQQSLF
Trigger: AAAGAGAGATTGCTGGAGCCACCCCTCATATAACTG...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGTGTGCTGCTTCTCTGTaGCTTTCTGTTGTGCTAGCT +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGCAASL*LSVVLA
Trigger: AGCTAGCACAACAGAAAGCCACAGAGAAGCAGCACA...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCCAATCCCTCTCAACCTaGCATAGGCAGTATTTATGT +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPQSLST*HRQYLC
Trigger: ACATAAATACTGCCTATGCCAGGTTGAGAGGGATTG...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAAACTGCACTCCCCAATaGGATGGTAGGCATTTCTGC +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATNCTPQ*DGRHFC
Trigger: GCAGAAATGCCTACCATCCCATTGGGGAGTGCAGTT...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGGTACAGGCTATTTCTaGTTTCGTCAATCATCGCTA +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPGTGYF*FRQSSL
Trigger: TAGCGATGATTGACGAAACCAGAAATAGCCTGTACC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGGTACAGGCTATTTCTaGTTTCGTCAATCATCGCTA +
Preference number: 4 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPGTGYF*FRQSSL
Trigger: TAGCGATGATTGACGAAACCAGAAATAGCCTGTACC...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp TCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTCATCTTCTAAACTCTTaGCTAGAGCTGCTGAAGCTG +
Preference number: 4 (lower is better)
Translates to: SHTGLGTCSLLDNSGTLVHLLNS*LELLKL
Trigger: CAGCTTCAGCAGCTCTAGCCAAGAGTTTAGAAGATG...AACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAATAGTGTCCTCATGCTaGACTGCAGGGGCCGGGACC +
Preference number: 4 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKIVSSC*TAGAGT
Trigger: GGTCCCGGCCCCTGCAGTTCAGCATGAGGACACTAT...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCCAGCCTGGACCTTTTTaGCGACGTTATCCAGATCAA +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFQPGPF*RRYPDQ
Trigger: TTGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTG...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTGGCATGAGCAATGAGTaGGTTCAGGTCATCAGTAGA +
Preference number: 4 (lower is better)
Translates to: FWTILGPLLQTLQIPMLIGMSNE*VQVISR
Trigger: TCTACTGATGACCTGAACTCACTCATTGCTCATGCC...AATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCCTGTCCATTTGTTCTTaGCTGCGACGACGAAACTCT +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFLSICS*LRRRNS
Trigger: AGAGTTTCGTCGTCGCAGTCAAGAACAAATGGACAG...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACACTGTCCATTTGTTCTTaGCTGCGACGACGAAACTCT +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATLSICS*LRRRNS
Trigger: AGAGTTTCGTCGTCGCAGTCAAGAACAAATGGACAG...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAGACTCCCCTTTGAGCTaGTTGACAAACTTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNADSPLS*LTNFAA
Trigger: GGCAGCAAAGTTTGTCAATCAGCTCAAAGGGGAGTC...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACATGGGCTGTAATAGTCTaGAGAGTGACAGACGAAGTC +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATWAVIV*RVTDEV
Trigger: GACTTCGTCTGTCACTCTGCAGACTATTACAGCCCA...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAGTGAAGTCTCCCCTCTaGAGCAGTTATATGAGGGGT +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNAVKSPL*SSYMRG
Trigger: ACCCCTCATATAACTGCTGCAGAGGGGAGACTTCAC...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAGCTAGCTCAATGTGCTaGTTCTCTGTGGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATASSMC*FSVAFC
Trigger: ACAGAAAGCCACAGAGAAGCAGCACATTGAGCTAGC...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCAAGGCTAGCTCAATGTaGTGCTTCTCTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFKASSM*CFSVAF
Trigger: GAAAGCCACAGAGAAGCAGCACATTGAGCTAGCCTT...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCTTTTCTTCTAGCTTGTaGTTTTCCAAGGCTAGCTCA +
Preference number: 4 (lower is better)
Translates to: TCSLLDNSGTLVANPADTFSSSL*FSKASS
Trigger: TGAGCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAA...GGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTTTTCTTCTAGCTTGTaGTTTTCCAAGGCTAGCTCA +
Preference number: 4 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPFSSSL*FSKASS
Trigger: TGAGCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAA...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGATCAGTGTGGGCAGCTaGCTGCCGTCGAAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKISVGS*LPSKLG
Trigger: ACCCAACTTCGACGGCAGGCAGCTGCCCACACTGAT...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAGTGCCACAGGCAGTTTaGAGTCTTTCATCACCTCTG +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNAVPQAV*SLSSPL
Trigger: CAGAGGTGATGAAAGACTCCAAACTGCCTGTGGCAC...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCCAATCCCTCTCAACCTaGCATAGGCAGTATTTATGT +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCQSLST*HRQYLC
Trigger: ACATAAATACTGCCTATGCCAGGTTGAGAGGGATTG...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAAACTGCACTCCCCAATaGGATGGTAGGCATTTCTGC +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNANCTPQ*DGRHFC
Trigger: GCAGAAATGCCTACCATCCCATTGGGGAGTGCAGTT...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp AACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACGGTACAGGCTATTTCTaGTTTCGTCAATCATCGCTA +
Preference number: 4 (lower is better)
Translates to: NLLTSGQFWDPCCKPCRYGTGYF*FRQSSL
Trigger: TAGCGATGATTGACGAAACCAGAAATAGCCTGTACC...GTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCATCTTCTAAACTCTTaGCTAGAGCTGTGGTTTCAG +
Preference number: 4 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANHLLNS*LELWFQ
Trigger: CTGAAACCACAGCTCTAGCCAAGAGTTTAGAAGATG...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114151.10
3UTR CAA 72 bp TTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTaGTTGCAAACCCTGCAGATACCAATGCTGATTTTC +
Preference number: 4 (lower is better)
Translates to: LEPAHFWTILGP*LQTLQIPMLIF
Trigger: GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACTGTGCCTTGACAGCCTaGACTGCAGCATTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDCALTA*TAAFWA
Trigger: AGCCCAGAATGCTGCAGTTCAGGCTGTCAAGGCACA...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCACAGCCTGGACCTTTTTaGCGACGTTATCCAGATCAA +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNAQPGPF*RRYPDQ
Trigger: TTGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTG...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCACTGTCCATTTGTTCTTaGCTGCGACGACGAAACTCT +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNALSICS*LRRRNS
Trigger: AGAGTTTCGTCGTCGCAGTCAAGAACAAATGGACAG...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGCGACTTCTTCTCACCTaGAATCTCAGAATTGTCCAT +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGRLLLT*NLRIVH
Trigger: ATGGACAATTCTGAGATTGCAGGTGAGAAGAAGTCG...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTTTTCTTCTAGCTTGTaGTTTTCCAAGGCTAGCTCA +
Preference number: 4 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCFSSSL*FSKASS
Trigger: TGAGCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAA...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATTCTGTGGTGCTCCAATaGTTTTGCCACTGCAGAGTC +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDSVVLQ*FCHCRV
Trigger: GACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGA...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CCA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCCAGTTATATGAGGGGTaGCTCCAGCAATCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFQLYEG*LQQSLF
Trigger: AAAGAGAGATTGCTGGAGCCACCCCTCATATAACTG...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGTCTGCAGCAGTTATATaGGGGGTGGCTCCAGCAATC +
Preference number: 4 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKSAAVI*GVAPAI
Trigger: GATTGCTGGAGCCACCCCTCATATAACTGCTGCAGA...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATCCTGTTCCTGCACCTTaGGGACATCTCGTAAATGAT +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDPVPAP*GHLVND
Trigger: ATCATTTACGAGATGTCCTCAAGGTGCAGGAACAGG...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR TCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATTACTCTTGCTGCACTTaGGTGGTTCCTATTCCTACG +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDYSCCT*VVPIPT
Trigger: CGTAGGAATAGGAACCACTCAAGTGCAGCAAGAGTA...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR GCA 90 bp TCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTCGAAAGTGTATCACCTaGTGCAGAAATAATTTGAGC +
Preference number: 4 (lower is better)
Translates to: SLLDNSGTLVANPADTNARKCIT*CRNNLS
Trigger: GCTCAAATTATTTCTGCAGCAGGTGATACACTTTCG...AGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR GCA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGATCTCAACTTGTTCTTaGTTTTCCTGTTGCGCTAGA +
Preference number: 4 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGISTCS*FSCCAR
Trigger: TCTAGCGCAACAGGAAAAGCAAGAACAAGTTGAGAT...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR GCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATCTTGACAGCCTGAACTaGAGCATTCTGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDLDSLN*SILGCN
Trigger: ATTACAGCCCAGAATGCTGCAGTTCAGGCTGTCAAG...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGTCTTCGCTCCTTCAATaGACCCTCCACTGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKSSLLQ*TLHCSP
Trigger: TGGCGAACAGTGGAGGGTGCATTGAAGGAGCGAAGA...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATATTGACAAACTTTGCTaGCAGCTCCAGGTCACCATG +
Preference number: 4 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDIDKLC*QLQVTM
Trigger: CATGGTGACCTGGAGCTGGCAGCAAAGTTTGTCAAT...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CCA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACACAATCCCTCTCAACCTaGCATAGGCAGTATTTATGT +
Preference number: 4 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATQSLST*HRQYLC
Trigger: ACATAAATACTGCCTATGCCAGGTTGAGAGGGATTG...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR TCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTATGTTGGAGTGTGCCTTaGCAGCCTGAACTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELCWSVP*QPELQH
Trigger: ATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACA...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCACGACTTCTTCTCACCTaGAATCTCAGAATTGTCCAT +
Preference number: 4 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNARLLLT*NLRIVH
Trigger: ATGGACAATTCTGAGATTGCAGGTGAGAAGAAGTCG...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp ACTGAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGGTGAAGTCTCCCCTCTaGAGCAGTTATATGAGGGGT +
Preference number: 4 (lower is better)
Translates to: TEFKRVTLKLVGLLIWDLVKSPL*SSYMRG
Trigger: ACCCCTCATATAACTGCTGCAGAGGGGAGACTTCAC...CAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp TTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTTTCTTCTAGCTTGTaGTTTTCCAAGGCTAGCTCA +
Preference number: 4 (lower is better)
Translates to: FWTILGPLLQTLQIPMLIFSSSL*FSKASS
Trigger: TGAGCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAA...AATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR GCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACTCTGTGGTGCTCCAATaGTTTTGCCACTGCAGAGTC +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDSVVLQ*FCHCRV
Trigger: GACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGA...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACGTGCCACAGGCAGTTTaGAGTCTTTCATCACCTCTG +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDVPQAV*SLSSPL
Trigger: CAGAGGTGATGAAAGACTCCAAACTGCCTGTGGCAC...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTAACTCTTCTTTTGCTTTaGGCAGGGCATCGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELTLLLL*AGHRQL
Trigger: AAGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGT...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGTCAACTATCATGTTGTaGAGTCTCCCCTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKSTIML*SLPSAA
Trigger: TGCTGCAGAGGGGAGACTTCACAACATGATAGTTGA...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACCCTGTTCCTGCACCTTaGGGACATCTCGTAAATGAT +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDPVPAP*GHLVND
Trigger: ATCATTTACGAGATGTCCTCAAGGTGCAGGAACAGG...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACCTTGACAGCCTGAACTaGAGCATTCTGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDLDSLN*SILGCN
Trigger: ATTACAGCCCAGAATGCTGCAGTTCAGGCTGTCAAG...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAACAGCCTGGACCTTTTTaGCGACGTTATCCAGATCAA +
Preference number: 4 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKQPGPF*RRYPDQ
Trigger: TTGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTG...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAGGCATGAGCAATGAGTaGGTTCAGGTCATCAGTAGA +
Preference number: 4 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKGMSNE*VQVISR
Trigger: TCTACTGATGACCTGAACTCACTCATTGCTCATGCC...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTAGCTAGCTCAATGTGCTaGTTCTCTGTGGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELASSMC*FSVAFC
Trigger: ACAGAAAGCCACAGAGAAGCAGCACATTGAGCTAGC...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTAAAGGCTAGCTCAATGTaGTGCTTCTCTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELKASSM*CFSVAF
Trigger: GAAAGCCACAGAGAAGCAGCACATTGAGCTAGCCTT...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTAGTGCTCCAATGCTTTTaGCACTGCAGAGTCAAAGGT +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELVLQCF*HCRVKG
Trigger: ACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCAC...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACCAGTTATATGAGGGGTaGCTCCAGCAATCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDQLYEG*LQQSLF
Trigger: AAAGAGAGATTGCTGGAGCCACCCCTCATATAACTG...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTATGTGCTGCTTCTCTGTaGCTTTCTGTTGTGCTAGCT +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELCAASL*LSVVLA
Trigger: AGCTAGCACAACAGAAAGCCACAGAGAAGCAGCACA...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACCGACTTCTTCTCACCTaGAATCTCAGAATTGTCCAT +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDRLLLT*NLRIVH
Trigger: ATGGACAATTCTGAGATTGCAGGTGAGAAGAAGTCG...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACCATCTTCTAAACTCTTaGCTAGAGCTGTGGTTTCAG +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDHLLNS*LELWFQ
Trigger: CTGAAACCACAGCTCTAGCCAAGAGTTTAGAAGATG...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR CAA 72 bp GACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTaGAAACTGGTAGGATTACTCATTTGGGATTTGAAG +
Preference number: 4 (lower is better)
Translates to: DLFFCTEFKRVT*KLVGLLIWDLK
Trigger: CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR TCA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACTCTTCAGCAACTGCATaGCCTGTTCAAATTCATACT +
Preference number: 4 (lower is better)
Translates to: VQASYFETGRITHLGFEDSSATA*PVQIHT
Trigger: AGTATGAATTTGAACAGGTCATGCAGTTGCTGAAGA...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGTTTTCTTCTAGCTTGTaGTTTTCCAAGGCTAGCTCA +
Preference number: 4 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKFSSSL*FSKASS
Trigger: TGAGCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAA...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR CAA 72 bp GTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTaGAAGACTGCTTTTATCCAGAACTCTTGCTGCACT +
Preference number: 4 (lower is better)
Translates to: VTLKLVGLLIWD*KTAFIQNSCCT
Trigger: AGTGCAGCAAGAGTTCTGGATAAAAGCAGTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
3UTR CAA 72 bp CAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTaGGGATTTGAAGACTGCTTTTATCCAGAACTCTTG +
Preference number: 4 (lower is better)
Translates to: QASYFETGRITH*GFEDCFYPELL
Trigger: CAAGAGTTCTGGATAAAAGCAGTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR GCA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTATTCTTCTTCAGCAACTaGATGACCTGTTCAAATTCA +
Preference number: 4 (lower is better)
Translates to: PFILMEMTCSSVLSSSELFFFSN*MTCSNS
Trigger: TGAATTTGAACAGGTCATGCAGTTGCTGAAGAAGAA...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCACGCCGGGGGCTTCAGTaGCTTAGGCGGGAACAGGAG +
Preference number: 5 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPRRGLQ*LRREQE
Trigger: CTCCTGTTCCCGCCTAAGCAACTGAAGCCCCCGGCG...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CAA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCGCCGGGGGCTTCAGTaGCTTAGGCGGGAACAGGAG +
Preference number: 5 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLRRGLQ*LRREQE
Trigger: CTCCTGTTCCCGCCTAAGCAACTGAAGCCCCCGGCG...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS-3UTR CAA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCACGCCGGGGGCTTCAGTaGCTTAGGCGGGAACAGGAG +
Preference number: 5 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNARRGLQ*LRREQE
Trigger: CTCCTGTTCCCGCCTAAGCAACTGAAGCCCCCGGCG...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
CDS TCA 90 bp ATCACCTGCTGCAGAAATAATTTGAGCTGCCCCTGTAGATGCTGCTaGAGCTGGAGTGTCTCCCTTCGTTTTCTGGCTCTGTGCCACAGG +
Preference number: 5 (lower is better)
Translates to: ITCCRNNLSCPCRCC*SWSVSLRFLALCHR
Trigger: CCTGTGGCACAGAGCCAGAAAACGAAGGGAGACACTCCAGCTTCAGCAGCATCTACAGGGGCAGCTCAAATTATTTCTGCAGCAGGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000165331.8
CDS-3UTR CAA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPGAPML*PLQSQR
Trigger: CCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACC...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp CCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAGCTGTTTTCAGTATGTaGGAGTGTGCCTTGACAGCC +
Preference number: 5 (lower is better)
Translates to: PAHFWTILGPLLQTLQIPAVFSM*ECALTA
Trigger: GGCTGTCAAGGCACACTCCAACATACTGAAAACAGC...TGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGGCTGTTTTCAGTATGTaGGAGTGTGCCTTGACAGCC +
Preference number: 5 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLAVFSM*ECALTA
Trigger: GGCTGTCAAGGCACACTCCAACATACTGAAAACAGC...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGCTGTTTTCAGTATGTaGGAGTGTGCCTTGACAGCC +
Preference number: 5 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPAVFSM*ECALTA
Trigger: GGCTGTCAAGGCACACTCCAACATACTGAAAACAGC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCAACTCTTCTTTTGCTTaGAGCAGGGCATCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTNSSFA*SRASAA
Trigger: AGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGTT...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp TTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGGCAGCCTGGACCTTTTaGACGACGTTATCCAGATCA +
Preference number: 5 (lower is better)
Translates to: LEPAHFWTILGPLLQTLQAAWTF*TTLSRS
Trigger: TGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTGC...CTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGGCAGCCTGGACCTTTTaGACGACGTTATCCAGATCA +
Preference number: 5 (lower is better)
Translates to: DLEPAHFWTILGPLLQTLAAWTF*TTLSRS
Trigger: TGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTGC...CAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACACTGAGATACCACCTTaGCCTCTGACTGAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANTEIPP*PLTEQP
Trigger: AGGCTGCTCAGTCAGAGGCAAAGGTGGTATCTCAGT...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp ACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: TGLGTCSLLDNSGTLVANGAPML*PLQSQR
Trigger: CCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACC...GTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMGAPML*PLQSQR
Trigger: CCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACC...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS TCA 90 bp CCTTCATTAGTGTTGGGACATTCGGTTTTTATAGTGTCCTCATGCTaGACTGCAGGGGCCGGGACCGAAAGTGTATCACCTGCTGCAGAA +
Preference number: 5 (lower is better)
Translates to: PSLVLGHSVFIVSSC*TAGAGTESVSPAAE
Trigger: TTCTGCAGCAGGTGATACACTTTCGGTCCCGGCCCCTGCAGTTCAGCATGAGGACACTATAAAAACCGAATGTCCCAACACTAATGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000165331.8
CDS TCA 90 bp CCTTCATTAGTGTTGGGACATTCGGTTTTTATAGTGTCCTCATGCTaGACTGCAGGGGCCGGGACCGAAAGTGTATCACCTGCTGAAGCT +
Preference number: 5 (lower is better)
Translates to: PSLVLGHSVFIVSSC*TAGAGTESVSPAEA
Trigger: AGCTTCAGCAGGTGATACACTTTCGGTCCCGGCCCCTGCAGTTCAGCATGAGGACACTATAAAAACCGAATGTCCCAACACTAATGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171057.2
CDS-3UTR CAA 90 bp AACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACAACTCTTCTTTTGCTTaGAGCAGGGCATCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: NLLTSGQFWDPCCKPCRYNSSFA*SRASAA
Trigger: AGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGTT...GTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACGCAGCCTGGACCTTTTaGACGACGTTATCCAGATCA +
Preference number: 5 (lower is better)
Translates to: NLLTSGQFWDPCCKPCRYAAWTF*TTLSRS
Trigger: TGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTGC...GTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGGCAGCCTGGACCTTTTaGACGACGTTATCCAGATCA +
Preference number: 5 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMAAWTF*TTLSRS
Trigger: TGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTGC...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACTGAGATACCACCTTaGCCTCTGACTGAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGTEIPP*PLTEQP
Trigger: AGGCTGCTCAGTCAGAGGCAAAGGTGGTATCTCAGT...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGGAPML*PLQSQR
Trigger: CCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACC...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCGCATCTTCTAAACTCTaGGCTAGAGCTGCTGAAGCT +
Preference number: 5 (lower is better)
Translates to: RTWNLLTSGQFWDPCCKPASSKL*ARAAEA
Trigger: AGCTTCAGCAGCTCTAGCCAAGAGTTTAGAAGATGC...GGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp ACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCCCTGCAATCTCAGAATaGTCCATGGCTGTTTTCAGT +
Preference number: 5 (lower is better)
Translates to: TCSLLDNSGTLVANPADTPAISE*SMAVFS
Trigger: ACTGAAAACAGCCATGGACAATTCTGAGATTGCAGG...GGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GTGTTAACATCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGAACTCTTCTTTTGCTTaGAGCAGGGCATCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: VLTSHTGLGTCSLLDNSGNSSFA*SRASAA
Trigger: AGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGTT...CCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGATGTTAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp TCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTAACTCTTCTTTTGCTTaGAGCAGGGCATCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: SLLDNSGTLVANPADTNANSSFA*SRASAA
Trigger: AGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGTT...AGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAACTGAGATACCACCTTaGCCTCTGACTGAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATTEIPP*PLTEQP
Trigger: AGGCTGCTCAGTCAGAGGCAAAGGTGGTATCTCAGT...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp TTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTACTGAGATACCACCTTaGCCTCTGACTGAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: FWTILGPLLQTLQIPMLITEIPP*PLTEQP
Trigger: AGGCTGCTCAGTCAGAGGCAAAGGTGGTATCTCAGT...AATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp TCTCACACAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTCGCTTTTCTTCTAGCTaGTGCTTTTCCAAGGCTAGC +
Preference number: 5 (lower is better)
Translates to: SHTGLGTCSLLDNSGTLVRFSSS*CFSKAS
Trigger: GCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAAGCG...AACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTGTGTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCGCTTTTCTTCTAGCTaGTGCTTTTCCAAGGCTAGC +
Preference number: 5 (lower is better)
Translates to: NLLTSGQFWDPCCKPCRYRFSSS*CFSKAS
Trigger: GCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAAGCG...GTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp CTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCCCTGCAATCTCAGAATaGTCCATGGCTGTTTTCAGT +
Preference number: 5 (lower is better)
Translates to: LTSGQFWDPCCKPCRYQCPAISE*SMAVFS
Trigger: ACTGAAAACAGCCATGGACAATTCTGAGATTGCAGG...GCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTTCATCAGTAGAGAGTTaGCCAGCTAGGTCAGAAATA +
Preference number: 5 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPSSVES*PARSEI
Trigger: TATTTCTGACCTAGCTGGCAAACTCTCTACTGATGA...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp CAGGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCTCATCAGTAGAGAGTTaGCCAGCTAGGTCAGAAATA +
Preference number: 5 (lower is better)
Translates to: QDLEPAHFWTILGPLLQTSSVES*PARSEI
Trigger: TATTTCTGACCTAGCTGGCAAACTCTCTACTGATGA...GGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GGACTTGGAACCTGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTACTGAACCGGTTTCTTaGGTAATGGAACAGTATAAG +
Preference number: 5 (lower is better)
Translates to: GLGTCSLLDNSGTLVANPTEPVS*VMEQYK
Trigger: CTTATACTGTTCCATTACCAAAGAAACCGGTTCAGT...AGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCAGGTTCCAAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACATGCTGCAGAAATAATTaGAGCTGCCCCTGTAGATGC +
Preference number: 5 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATCCRNN*SCPCRC
Trigger: GCATCTACAGGGGCAGCTCAAATTATTTCTGCAGCA...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064062.13
CDS-3UTR CAA 90 bp TGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCGCATCTTCTAAACTCTaGGCTAGAGCTGCTGAAGCT +
Preference number: 5 (lower is better)
Translates to: WTILGPLLQTLQIPMLIFASSKL*ARAAEA
Trigger: AGCTTCAGCAGCTCTAGCCAAGAGTTTAGAAGATGC...GAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGACTGAACCGGTTTCTTaGGTAATGGAACAGTATAAG +
Preference number: 5 (lower is better)
Translates to: AHFWTILGPLLQTLQIPMTEPVS*VMEQYK
Trigger: CTTATACTGTTCCATTACCAAAGAAACCGGTTCAGT...CATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATGCTGTTTTCAGTATGTaGGAGTGTGCCTTGACAGCC +
Preference number: 5 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDAVFSM*ECALTA
Trigger: GGCTGTCAAGGCACACTCCAACATACTGAAAACAGC...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp AAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACAGCATCTTCTAAACTCTaGGCTAGAGCTGTGGTTTCA +
Preference number: 5 (lower is better)
Translates to: KPPGVHWHDSSVRTVNATASSKL*ARAVVS
Trigger: TGAAACCACAGCTCTAGCCAAGAGTTTAGAAGATGC...TGTTGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114151.10
CDS-3UTR CAA 90 bp TGCTCACTTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATACTGAACCGGTTTCTTaGGTAATGGAACAGTATAAG +
Preference number: 5 (lower is better)
Translates to: CSLLDNSGTLVANPADTNTEPVS*VMEQYK
Trigger: CTTATACTGTTCCATTACCAAAGAAACCGGTTCAGT...ATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAAGTGAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACACTGAGATACCACCTTaGCCTCTGACTGAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: VQASYFETGRITHLGFEDTEIPP*PLTEQP
Trigger: AGGCTGCTCAGTCAGAGGCAAAGGTGGTATCTCAGT...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp TTCTGGACAATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTCATCAGTAGAGAGTTaGCCAGCTAGGTCAGAAATA +
Preference number: 5 (lower is better)
Translates to: FWTILGPLLQTLQIPMLISSVES*PARSEI
Trigger: TATTTCTGACCTAGCTGGCAAACTCTCTACTGATGA...AATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAATTGTCCAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064062.13
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGACGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: VQASYFETGRITHLGFEDGAPML*PLQSQR
Trigger: CCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACC...GTCTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp ATTCTGGGACCCTTGTTGCAAACCCTGCAGATACCAATGCTGATTTTCTTTGATCCTGCAATCTCAGAATaGTCCATGGCTGTTTTCAGT +
Preference number: 5 (lower is better)
Translates to: ILGPLLQTLQIPMLIFFDPAISE*SMAVFS
Trigger: ACTGAAAACAGCCATGGACAATTCTGAGATTGCAGG...ATCAAAGAAAATCAGCATTGGTATCTGCAGGGTTTGCAACAAGGGTCCCAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGGCAGCCTGGACCTTTTaGACGACGTTATCCAGATCA +
Preference number: 5 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKAAWTF*TTLSRS
Trigger: TGATCTGGATAACGTCGTCAAAAAGGTCCAGGCTGC...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp ATAAAGCCTCCTGGAGTTCATTGGCATGATAGCAGTGTAAGGACGGTAAATGCAACTGAACCGGTTTCTTaGGTAATGGAACAGTATAAG +
Preference number: 5 (lower is better)
Translates to: IKPPGVHWHDSSVRTVNATEPVS*VMEQYK
Trigger: CTTATACTGTTCCATTACCAAAGAAACCGGTTCAGT...TGCATTTACCGTCCTTACACTGCTATCATGCCAATGAACTCCAGGAGGCTTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064062.13
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
CDS-3UTR CAA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAGCTGTTTTCAGTATGTaGGAGTGTGCCTTGACAGCC +
Preference number: 5 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKAVFSM*ECALTA
Trigger: GGCTGTCAAGGCACACTCCAACATACTGAAAACAGC...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTAAACTCTTCTTTTGCTTaGAGCAGGGCATCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: PFILMEMTCSSVLSSSELNSSFA*SRASAA
Trigger: AGCTGCCGATGCCCTGCTCAAAGCAAAAGAAGAGTT...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp CCTTTTATATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACGCTTTTCTTCTAGCTaGTGCTTTTCCAAGGCTAGC +
Preference number: 5 (lower is better)
Translates to: PFILMEMTCSSVLSSSELRFSSS*CFSKAS
Trigger: GCTAGCCTTGGAAAAGCACAAGCTAGAAGAAAAGCG...TAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAATATAAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGGCATCTTCTAAACTCTaGGCTAGAGCTGTGGTTTCA +
Preference number: 5 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKASSKL*ARAVVS
Trigger: TGAAACCACAGCTCTAGCCAAGAGTTTAGAAGATGC...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAACCTGCAATCTCAGAATaGTCCATGGCTGTTTTCAGT +
Preference number: 5 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKPAISE*SMAVFS
Trigger: ACTGAAAACAGCCATGGACAATTCTGAGATTGCAGG...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp GAGTTCAAGCGAGTTACTTTGAAACTGGTAGGATTACTCATTTGGGATTTGAAGTCATCAGTAGAGAGTTaGCCAGCTAGGTCAGAAATA +
Preference number: 5 (lower is better)
Translates to: EFKRVTLKLVGLLIWDLKSSVES*PARSEI
Trigger: TATTTCTGACCTAGCTGGCAAACTCTCTACTGATGA...CTTCAAATCCCAAATGAGTAATCCTACCAGTTTCAAAGTAACTCGCTTGAACTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS-3UTR CAA 90 bp ATTAATGGAGATGACCTGTTCTTCTGTACTGAGTTCAAGCGAGTTACTTTGAAAACTGAACCGGTTTCTTaGGTAATGGAACAGTATAAG +
Preference number: 5 (lower is better)
Translates to: INGDDLFFCTEFKRVTLKTEPVS*VMEQYK
Trigger: CTTATACTGTTCCATTACCAAAGAAACCGGTTCAGT...TTTCAAAGTAACTCGCTTGAACTCAGTACAGAAGAACAGGTCATCTCCATTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207003.2
CDS GCA 72 bp CTGAACTGCAGGGGCCGGGACCGAAAGTGTATCACCTaGTGCAGAAATAATTTGAGCTGCCCCTGTAGATGC +
Preference number: 6 (lower is better)
Translates to: LNCRGRDRKCIT*CRNNLSCPCRC
Trigger: GCATCTACAGGGGCAGCTCAAATTATTTCTGCAGCAGGTGATACACTTTCGGTCCCGGCCCCTGCAGTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000165331.8
CDS TCA 72 bp GGGACCGAAAGTGTATCACCTGCTGCAGAAATAATTTaGGCTGCCCCTGTAGATGCTGCTGAAGCTGGAGTG +
Preference number: 6 (lower is better)
Translates to: GTESVSPAAEII*AAPVDAAEAGV
Trigger: CACTCCAGCTTCAGCAGCATCTACAGGGGCAGCTCAAATTATTTCTGCAGCAGGTGATACACTTTCGGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000165331.8
CDS TCA 72 bp GTGTTGGGACATTCGGTTTTTATAGTGTCCTCATGCTaGACTGCAGGGGCCGGGACCGAAAGTGTATCACCT +
Preference number: 6 (lower is better)
Translates to: VLGHSVFIVSSC*TAGAGTESVSP
Trigger: AGGTGATACACTTTCGGTCCCGGCCCCTGCAGTTCAGCATGAGGACACTATAAAAACCGAATGTCCCAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000064062.13
ENSMUST00000101301.10
ENSMUST00000114151.10
ENSMUST00000165331.8
ENSMUST00000171057.2
ENSMUST00000207003.2
CDS CAA 72 bp CTCCAGCAATCTTACCAGCAGTCAACCCAGAACTGCTaGAAGTGGAGTATCTACGGCATGGTCGTAGTGGAC +
Preference number: 6 (lower is better)
Translates to: LQQSYQQSTQNC*KWSIYGMVVVD
Trigger: GTCCACTACGACCATGCCGTAGATACTCCACTTCAAGCAGTTCTGGGTTGACTGCTGGTAAGATTGCTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000064062.13
ENSMUST00000101301.10
ENSMUST00000114151.10
ENSMUST00000165331.8
ENSMUST00000166938.8
ENSMUST00000166975.8
ENSMUST00000171057.2
ENSMUST00000207003.2
CDS TCA 72 bp TGCAGAAATAATTTGAGCTGCCCCTGTAGATGCTGCTaGAGCTGGAGTGTCTCCCTTCGTTTTCTGGCTCTG +
Preference number: 6 (lower is better)
Translates to: CRNNLSCPCRCC*SWSVSLRFLAL
Trigger: CAGAGCCAGAAAACGAAGGGAGACACTCCAGCTTCAGCAGCATCTACAGGGGCAGCTCAAATTATTTCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064062.13
ENSMUST00000165331.8
CDS GCA 72 bp CTGCTCAGCCTGAATTTCACTTCTGTGGTGCTCCAATaGTTTTGCCACTGCAGAGTCAAAGGTCCGCTTTTC +
Preference number: 6 (lower is better)
Translates to: LLSLNFTSVVLQ*FCHCRVKGPLF
Trigger: GAAAAGCGGACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGAAGTGAAATTCAGGCTGAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000064062.13
ENSMUST00000101301.10
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
ENSMUST00000207003.2
CDS CAA 90 bp TGTCCTGCTCAGCCTGAATTTCACTTCTGTGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGGTCCGCTTTTCTTCTAGCTTGTGCT +
Preference number: 6 (lower is better)
Translates to: CPAQPEFHFCGAPML*PLQSQRSAFLLACA
Trigger: AGCACAAGCTAGAAGAAAAGCGGACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGAAGTGAAATTCAGGCTGAGCAGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064062.13
ENSMUST00000101301.10
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
ENSMUST00000207003.2
CDS CAA 72 bp CAGCCTGAATTTCACTTCTGTGGTGCTCCAATGCTTTaGCCACTGCAGAGTCAAAGGTCCGCTTTTCTTCTA +
Preference number: 6 (lower is better)
Translates to: QPEFHFCGAPML*PLQSQRSAFLL
Trigger: TAGAAGAAAAGCGGACCTTTGACTCTGCAGTGGCAAAAGCATTGGAGCACCACAGAAGTGAAATTCAGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064062.13
ENSMUST00000101301.10
ENSMUST00000114151.10
ENSMUST00000166938.8
ENSMUST00000166975.8
ENSMUST00000207003.2
CDS CAA 72 bp TGGAGATTTTTAGTGGACCAGACTGAACCGGTTTCTTaGGTAATGGAACAGTATAAGGCGCAGAACCAAGAA +
Preference number: 6 (lower is better)
Translates to: WRFLVDQTEPVS*VMEQYKAQNQE
Trigger: TTCTTGGTTCTGCGCCTTATACTGTTCCATTACCAAAGAAACCGGTTCAGTCTGGTCCACTAAAAATCTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000064062.13
ENSMUST00000101301.10
ENSMUST00000114151.10
ENSMUST00000165331.8
ENSMUST00000166938.8
ENSMUST00000166975.8
ENSMUST00000171057.2
ENSMUST00000207003.2