Pregenerated sensors for IL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021538Ensembl transcript IDs: ENSMUST00000022019.4
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCTGCCCCATGTGGTGCTaGATCTCTGGCCCAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFCPMWC*ISGPAQ Trigger: CTGTGCTGGGCCAGAGATGCAGCACCACATGGGGCA...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR TCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCGGTAATTGGTGTCTCTaGTGCCCCATGTGGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFGNWCL*CPMWCC Trigger: GCAGCACCACATGGGGCATCAGAGACACCAATTACC...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR GCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCTGGTCACGTTGCCGCTaGAGCTGCATTTTGACGGTG | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFWSRCR*SCILTV Trigger: CACCGTCAAAATGCAGCTGCAGCGGCAACGTGACCA...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCGTGGTGCTGCATCTCTaGCCCAGCACAGAACTGAAG | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFVVLHL*PSTELK Trigger: CTTCAGTTCTGTGCTGGGCCAGAGATGCAGCACCAC...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR TCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCGGCCCAGCACAGAACTaGAGAGCAAAACAGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFGPAQN*RAKQRQ Trigger: TTGCCTCTGTTTTGCTCTTCAGTTCTGTGCTGGGCC...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCTTGCCTGCCATGGTCTaGTTGCATGGCTTTTCGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFLPAMV*LHGFSQ Trigger: CTGCGAAAAGCCATGCAACCAGACCATGGCAGGCAA...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCTGCATCTCTGTCTTCTaGAACGTCCCCAGGAGACTC | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFCISVF*NVPRRL Trigger: GAGTCTCCTGGGGACGTTCCAGAAGACAGAGATGCA...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCGTGTGTTGCCTGCCATaGTCTGGTTGCATGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFVCCLP*SGCMAF Trigger: AAAAGCCATGCAACCAGACCATGGCAGGCAACACAC...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR GCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCCATGGTCGGCTTTTCTaGCTTTGCATCTCTGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFHGRLF*LCISVF Trigger: GAAGACAGAGATGCAAAGGCAGAAAAGCCGACCATG...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR TCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCAACAGGCAAGAGTCTTaGTTTCTGTGTGGCATTGGT | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFNRQES*FLCGIG Trigger: ACCAATGCCACACAGAAATCAAGACTCTTGCCTGTT...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCATTTCTGTGTGGCATTaGTCAGCTGTAACAGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFISVWH*SAVTVP Trigger: AGGGACTGTTACAGCTGACCAATGCCACACAGAAAT...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCGTCTTGATTTCTGTGTaGCATTGGTCAGCTGTAACA | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFVLISV*HWSAVT Trigger: TGTTACAGCTGACCAATGCCACACAGAAATCAAGAC...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CCA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCATCCTTTTCACCCGATaGAAAACAGGCAAGAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFILFTR*KTGKSL Trigger: AAGACTCTTGCCTGTTTTCCATCGGGTGAAAAGGAT...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS CCA 90 bp | TCCTTTTCACCCGATGGAAAACAGGCAAGAGTCTTGATTTCTGTGTaGCATTGGTCAGCTGTAACAGTCCCTCCCTGTAGCACGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: SFSPDGKQARVLISV*HWSAVTVPPCSTVW Trigger: CCACACCGTGCTACAGGGAGGGACTGTTACAGCTGACCAATGCCACACAGAAATCAAGACTCTTGCCTGTTTTCCATCGGGTGAAAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CAA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCCGCTGCAGCTGCATTTaGACGGTGGATCATCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFRCSCI*TVDHPS Trigger: TGAAGGATGATCCACCGTCAAAATGCAGCTGCAGCG...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CAA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCGATTTCTGTGTGGCATaGGTCAGCTGTAACAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFDFCVA*VSCNSP Trigger: GGGACTGTTACAGCTGACCAATGCCACACAGAAATC...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS-3UTR CAA 90 bp | AGCTTAGTTTATTTCTTCACTGTAACAGTTAAGGAGGGGAGGTTTTGTAAATTCAAACAGGCAAGAGTCTaGATTTCTGTGTGGCATTGG | + |
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Preference number: 5 (lower is better) Translates to: SLVYFFTVTVKEGRFCKFKQARV*ISVWHW Trigger: CCAATGCCACACAGAAATCAAGACTCTTGCCTGTTT...GAATTTACAAAACCTCCCCTCCTTAACTGTTACAGTGAAGAAATAAACTAAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS GCA 72 bp | CAGTTGGGACGGAGAGACACAAGCAGCTGGTCACGTTaGCGCTGCAGCTGCATTTTGACGGTGGATCATCCT | + |
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Preference number: 6 (lower is better) Translates to: QLGRRDTSSWSR*RCSCILTVDHP Trigger: AGGATGATCCACCGTCAAAATGCAGCTGCAGCGGCAACGTGACCAGCTGCTTGTGTCTCTCCGTCCCAACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS CAA 72 bp | GTCCCTCCCTGTAGCACGGTGTGGTACAATCATCAGTaGGGACGGAGAGACACAAGCAGCTGGTCACGTTGC | + |
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Preference number: 6 (lower is better) Translates to: VPPCSTVWYNHQ*GRRDTSSWSRC Trigger: GCAACGTGACCAGCTGCTTGTGTCTCTCCGTCCCAACTGATGATTGTACCACACCGTGCTACAGGGAGGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS CCA 72 bp | CCCGATGGAAAACAGGCAAGAGTCTTGATTTCTGTGTaGCATTGGTCAGCTGTAACAGTCCCTCCCTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: PDGKQARVLISV*HWSAVTVPPCS Trigger: GCTACAGGGAGGGACTGTTACAGCTGACCAATGCCACACAGAAATCAAGACTCTTGCCTGTTTTCCATCGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS CAA 90 bp | GGACTTCAACTATCCTTTTCACCCGATGGAAAACAGGCAAGAGTCTaGATTTCTGTGTGGCATTGGTCAGCTGTAACAGTCCCTCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: GLQLSFSPDGKQARV*ISVWHWSAVTVPPC Trigger: ACAGGGAGGGACTGTTACAGCTGACCAATGCCACACAGAAATCAAGACTCTTGCCTGTTTTCCATCGGGTGAAAAGGATAGTTGAAGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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| CDS CAA 72 bp | CTATCCTTTTCACCCGATGGAAAACAGGCAAGAGTCTaGATTTCTGTGTGGCATTGGTCAGCTGTAACAGTC | + |
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Preference number: 6 (lower is better) Translates to: LSFSPDGKQARV*ISVWHWSAVTV Trigger: GACTGTTACAGCTGACCAATGCCACACAGAAATCAAGACTCTTGCCTGTTTTCCATCGGGTGAAAAGGATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022019.4 |
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