Pregenerated sensors for IL7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040329Ensembl transcript IDs: ENSMUST00000168269.8, ENSMUST00000192202.6, ENSMUST00000194184.6, ENSMUST00000194279.6
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCATCTCATACCTCACTGTAGATTTCTCAGCTGCTTGGCTTATTTaGGCAGGAGGCATCCAGGAACTTCTGGAAGGGTTTCAACCTCTC | + |
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Preference number: 1 (lower is better) Translates to: IISYLTVDFSAAWLI*AGGIQELLEGFQPL Trigger: GAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTATGAGATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR TCA 90 bp | CACTTGAGAGCTAAAGCCAGTAGCATCAGGAAAACAAGTCTTCCTTaGCTGTATAAGGGGTTTGAGGCAAGCCTGGAATTTCTAAGACTG | + |
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Preference number: 1 (lower is better) Translates to: HLRAKASSIRKTSLP*LYKGFEASLEFLRL Trigger: CAGTCTTAGAAATTCCAGGCTTGCCTCAAACCCCTTATACAGTCAAGGAAGACTTGTTTTCCTGATGCTACTGGCTTTAGCTCTCAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR GCA 90 bp | TCAGGCTCACCATGTTCACCTATAAGGAAATTATCAGGATTCCTTTaGTTCTGTCCTCCTTGCCAGTTGCTAGGAAACAATAAGGGTAAC | + |
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Preference number: 1 (lower is better) Translates to: SGSPCSPIRKLSGFL*FCPPCQLLGNNKGN Trigger: GTTACCCTTATTGTTTCCTAGCAACTGGCAAGGAGGACAGAAGCAAAGGAATCCTGATAATTTCCTTATAGGTGAACATGGTGAGCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR GCA 90 bp | TCTCAAGGAATTCTCCTGCCTCAACCTCCTGCAAATGTACATCAGTaGTCCCCACTTCTTTTCTATTTAGATATTGATTGGTGCAACAGC | + |
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Preference number: 1 (lower is better) Translates to: SQGILLPQPPANVHQ*SPLLFYLDIDWCNS Trigger: GCTGTTGCACCAATCAATATCTAAATAGAAAAGAAGTGGGGAGCACTGATGTACATTTGCAGGAGGTTGAGGCAGGAGAATTCCTTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR TCA 90 bp | GGAAGTTGGTACTTTCAGAAGTGGGTGAACAGAGTTGACAAGAGTTaGCATAGAGTGAACATAGTTTACAGAGAGCACACACAAAACTTT | + |
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Preference number: 1 (lower is better) Translates to: GSWYFQKWVNRVDKS*HRVNIVYREHTQNF Trigger: AAAGTTTTGTGTGTGCTCTCTGTAAACTATGTTCACTCTATGTCAACTCTTGTCAACTCTGTTCACCCACTTCTGAAAGTACCAACTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTGCATCCAGGAACTTCTaGAAGGGTTTCAACCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: MLTAAVSCISVSIISYLTASRNF*KGFNLS Trigger: GGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGC...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR GCA 90 bp | AAATCAGAATATTGTTCAATATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTACCACACATGCAATGTaGCAGTGGAGCAGGCATCGG | + |
|
Preference number: 2 (lower is better) Translates to: KSEYCSILVGSHPDSLAGTTHAM*QWSRHR Trigger: CCGATGCCTGCTCCACTGGCACATTGCATGTGTGGT...ACCTGCAAGGCTGTCTGGATGGCTCCCTACCAATATTGAACAATATTCTGATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR CAA 90 bp | CATCATCTCATACCTCACTGTAGATTTCTCAGCTGCTTGGCTTATTaGAGCAGGAGGCATCCAGGAACTTCTGGAAGGGTTTCAACCTCT | + |
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Preference number: 2 (lower is better) Translates to: HHLIPHCRFLSCLAY*SRRHPGTSGRVSTS Trigger: AGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTATGAGATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR CAA 90 bp | TTCTGTGTCCATCATCTCATACCTCACTGTAGATTTCTCAGCTGCTaGGCTTATTTGAGCAGGAGGCATCCAGGAACTTCTGGAAGGGTT | + |
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Preference number: 2 (lower is better) Translates to: FCVHHLIPHCRFLSC*AYLSRRHPGTSGRV Trigger: AACCCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTATGAGATGATGGACACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | TTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTCTGGAAGGACCTCTCCAAGTATATaGACCAGTAGATTCTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: FLSCLAYLSRRHPGTSGRTSPSI*TSRFLE Trigger: CTCCAAGAATCTACTGGTTCATATACTTGGAGAGGT...CCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR CCA 90 bp | TATATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCAGCATCCAGGAACTTCTaGAAGGGTTTCAACCTCTCC | + |
|
Preference number: 2 (lower is better) Translates to: YMYMLTAAVSCISVSIISASRNF*KGFNLS Trigger: GGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGC...TGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR CCA 90 bp | AAATCAGAATATTGTTCAATATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTGCATCCAGGAACTTCTaGAAGGGTTTCAACCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: KSEYCSILVGSHPDSLAGASRNF*KGFNLS Trigger: GGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGC...ACCTGCAAGGCTGTCTGGATGGCTCCCTACCAATATTGAACAATATTCTGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR-3UTR CCA 90 bp | TTGAAGCATGTGGGAAGTTGGTACTTTCAGAAGTGGGTGAACAGAGTTGACAAGGAGCATTATAGGGGTTaGGGAAAAGGAGAAGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: LKHVGSWYFQKWVNRVDKEHYRG*GKGEAR Trigger: TCTTGCTTCTCCTTTTCCCCAACCCCTATAATGCTC...CTTGTCAACTCTGTTCACCCACTTCTGAAAGTACCAACTTCCCACATGCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | GTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTGTAGATTTCTCAGCTACCTCTCCAAGTATATaGACCAGTAGATTCTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: VSCISVSIISYLTVDFSATSPSI*TSRFLE Trigger: CTCCAAGAATCTACTGGTTCATATACTTGGAGAGGT...AGCTGAGAAATCTACAGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | ATATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTATAGAGATTATCTTACACACCTCTCCAAGTATATaGACCAGTAGATTCTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: ILVGSHPDSLAGIEIILHTSPSI*TSRFLE Trigger: CTCCAAGAATCTACTGGTTCATATACTTGGAGAGGT...GTGTAAGATAATCTCTATACCTGCAAGGCTGTCTGGATGGCTCCCTACCAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | ATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTATAGAGATTATCTTACACATGCATTGCAGTTGACATaGTTGCATTACAAAAATCTG | + |
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Preference number: 2 (lower is better) Translates to: IGREPSRQPCRYRDYLTHALQLT*LHYKNL Trigger: CAGATTTTTGTAATGCAATCATGTCAACTGCAATGC...ATGTGTAAGATAATCTCTATACCTGCAAGGCTGTCTGGATGGCTCCCTACCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGCATGTGGGAAGTTGGTACTTTCAGAAGTGGGTGAACAGAGTTGACAAGTCCTTCATGAGTAAATaGGAAGAACCAGTGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LKHVGSWYFQKWVNRVDKSFMSK*EEPVKK Trigger: TTTCTTCACTGGTTCTTCTCATTTACTCATGAAGGA...CTTGTCAACTCTGTTCACCCACTTCTGAAAGTACCAACTTCCCACATGCTTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR-3UTR CCA 90 bp | AGTGTTAGAAACATTTGGAACGGTTTTAAAAGCATTGCAGTTGACATGATTGCAGCATCCAGGAACTTCTaGAAGGGTTTCAACCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SVRNIWNGFKSIAVDMIAASRNF*KGFNLS Trigger: GGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGC...TGCAATCATGTCAACTGCAATGCTTTTAAAACCGTTCCAAATGTTTCTAACACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | AGTGTTAGAAACATTTGGAACGGTTTTAAAAGCATTGCAGTTGACATGATTGCATTTATATGTATATGCTaGCGGCAGCAGTCAGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: SVRNIWNGFKSIAVDMIAFICIC*RQQSAA Trigger: TGCAGCTGACTGCTGCCGTCAGCATATACATATAAA...TGCAATCATGTCAACTGCAATGCTTTTAAAACCGTTCCAAATGTTTCTAACACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR TCA 90 bp | TCCCCACTTCTTTTCTATTTAGATATTGATTGGTGCAACAGCACACCTATCTTTTCTTTCCATTACAACTaGAGGAAGACAGCAGACCTT | + |
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Preference number: 2 (lower is better) Translates to: SPLLFYLDIDWCNSTPIFSFHYN*RKTADL Trigger: AAGGTCTGCTGTCTTCCTTCAGTTGTAATGGAAAGA...AAAGATAGGTGTGCTGTTGCACCAATCAATATCTAAATAGAAAAGAAGTGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGAATATTCAATATGTTTGAAGCATGTGGGAAGTTGGTACTTTCAGAAGTGGCACTTATTGCAAGATTaGGTTGAAGTGATTCACAAT | + |
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Preference number: 2 (lower is better) Translates to: KEYSICLKHVGSWYFQKWHLLQD*VEVIHN Trigger: ATTGTGAATCACTTCAACGCAATCTTGCAATAAGTG...CCACTTCTGAAAGTACCAACTTCCCACATGCTTCAAACATATTGAATATTCTTT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR GCA 72 bp | GAGAAGCAAGAAGGCATGGCTACCACACATGCAATGTaGCAGTGGAGCAGGCATCGGTCAAATACATCCAGC | + |
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Preference number: 3 (lower is better) Translates to: EKQEGMATTHAM*QWSRHRSNTSS Trigger: GCTGGATGTATTTGACCGATGCCTGCTCCACTGGCACATTGCATGTGTGGTAGCCATGCCTTCTTGCTTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR-3UTR CAA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTAGCTGCTTGGCTTATTaGAGCAGGAGGCATCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: MLTAAVSCISVSIISYLTSCLAY*SRRHPG Trigger: TCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCT...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR CAA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTAGATTTCTCAGCTGCTaGGCTTATTTGAGCAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: MLTAAVSCISVSIISYLTRFLSC*AYLSRR Trigger: CCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCT...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR CAA 90 bp | TATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATAAGCTGCTTGGCTTATTaGAGCAGGAGGCATCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: YVYADGSSQLHFCVHHLISCLAY*SRRHPG Trigger: TCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCT...TATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR CAA 90 bp | CTCCAGTCTAAAACAGGACAGTTCCACTCCCCCAGTGGTTCACCAATGAATGTTAGATTTCTCAGCTGCTaGGCTTATTTGAGCAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: LQSKTGQFHSPSGSPMNVRFLSC*AYLSRR Trigger: CCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCT...AACATTCATTGGTGAACCACTGGGGGAGTGGAACTGTCCTGTTTTAGACTGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | TACCTCACTGTAGATTTCTCAGCTGCTTGGCTTATTTaGGCAGGAGGCATCCAGGAACTTCTGGAAGGGTTT | + |
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Preference number: 3 (lower is better) Translates to: YLTVDFSAAWLI*AGGIQELLEGF Trigger: AAACCCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR CCA 72 bp | CTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTCTaGAAGGGTTTCAACCTCTCCAAGTATATGAACCAG | + |
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Preference number: 3 (lower is better) Translates to: LGLFEQEASRNF*KGFNLSKYMNQ Trigger: CTGGTTCATATACTTGGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR-3UTR CAA 90 bp | TATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATAAGATTTCTCAGCTGCTaGGCTTATTTGAGCAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: YVYADGSSQLHFCVHHLIRFLSC*AYLSRR Trigger: CCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCT...TATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | CACACACAAAACTTTGGATCCAGTCCCAGCACAGCCTaGATTGACCTTCAGTACCACATTCCTGTAATCCTA | + |
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Preference number: 3 (lower is better) Translates to: HTQNFGSSPSTA*IDLQYHIPVIL Trigger: TAGGATTACAGGAATGTGGTACTGAAGGTCAATTCAGGCTGTGCTGGGACTGGATCCAAAGTTTTGTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | GCTTACCCATTTTACCAGTTCCTCAGGACAAAGGACTaGCACGTAGGAGATGTGGGATATCTAAGGAAGTTA | + |
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Preference number: 3 (lower is better) Translates to: AYPFYQFLRTKD*HVGDVGYLRKL Trigger: TAACTTCCTTAGATATCCCACATCTCCTACGTGTCAGTCCTTTGTCCTGAGGAACTGGTAAAATGGGTAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR-3UTR CAA 90 bp | ATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTATAGAGATTATCTTACACATCATGTTGCAAACAAGTaGAGAGAACTGTTTTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: IGREPSRQPCRYRDYLTHHVANK*RELFSG Trigger: CCCAGAAAACAGTTCTCTCAACTTGTTTGCAACATG...ATGTGTAAGATAATCTCTATACCTGCAAGGCTGTCTGGATGGCTCCCTACCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | GCTAGATGCTCACGTGGCTGGAAAAAGCAAGGAGAATaGGAATTCAGTACAAGCAAACCCTTATCACTTTCA | + |
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Preference number: 3 (lower is better) Translates to: ARCSRGWKKQGE*EFSTSKPLSLS Trigger: TGAAAGTGATAAGGGTTTGCTTGTACTGAATTCTCATTCTCCTTGCTTTTTCCAGCCACGTGAGCATCTAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| 3UTR GCA 72 bp | TATCTTTATATGTATATGCTGACGGCAGCAGTCAGCTaGATTTCTGTGTCCATCATCTCATACCTCACTGTA | + |
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Preference number: 3 (lower is better) Translates to: YLYMYMLTAAVS*ISVSIISYLTV Trigger: TACAGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATATAAAGATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR GCA 72 bp | AAAAGTGGATCAAATCCTGTTATCTTAGCATTCACATaGAGATTTCCGATCAGGGCATCAGAACCCTACAGA | + |
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Preference number: 3 (lower is better) Translates to: KSGSNPVILAFT*RFPIRASEPYR Trigger: TCTGTAGGGTTCTGATGCCCTGATCGGAAATCTGCATGTGAATGCTAAGATAACAGGATTTGATCCACTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR GCA 72 bp | ATTCTCCTGCCTCAACCTCCTGCAAATGTACATCAGTaGTCCCCACTTCTTTTCTATTTAGATATTGATTGG | + |
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Preference number: 3 (lower is better) Translates to: ILLPQPPANVHQ*SPLLFYLDIDW Trigger: CCAATCAATATCTAAATAGAAAAGAAGTGGGGAGCACTGATGTACATTTGCAGGAGGTTGAGGCAGGAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | AAACAGGACAGTTCCACTCCCCCAGTGGTTCACCAATaGATGTTTAACCATACCATCATTTTGCTAAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: KQDSSTPPVVHQ*MFNHTIILLRK Trigger: TTTTCTTAGCAAAATGATGGTATGGTTAAACATTCATTGGTGAACCACTGGGGGAGTGGAACTGTCCTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | TACTTTCAGAAGTGGGTGAACAGAGTTGACAAGAGTTaGCATAGAGTGAACATAGTTTACAGAGAGCACACA | + |
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Preference number: 3 (lower is better) Translates to: YFQKWVNRVDKS*HRVNIVYREHT Trigger: TGTGTGCTCTCTGTAAACTATGTTCACTCTATGTCAACTCTTGTCAACTCTGTTCACCCACTTCTGAAAGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR TCA 72 bp | TCATCCTTTAAGAACCAGTACTTATGTAGCAGAGGATaGACTTTCCCTACAATAATAAGTGGTGAAGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: SSFKNQYLCSRG*TFPTIISGEVL Trigger: AAGGACTTCACCACTTATTATTGTAGGGAAAGTTCATCCTCTGCTACATAAGTACTGGTTCTTAAAGGATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR CCA 72 bp | TTCAGTACAAGCAAACCCTTATCACTTTCAGAAATTTaGCCTCTACAACATAGTGTTTCTTTCCATTACAAC | + |
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Preference number: 3 (lower is better) Translates to: FSTSKPLSLSEI*PLQHSVSFHYN Trigger: GTTGTAATGGAAAGAAACACTATGTTGTAGAGGCCAAATTTCTGAAAGTGATAAGGGTTTGCTTGTACTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| CDS-3UTR TCA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTGGCACTCAGATGATGTaGCAGGCAGCAGAACAAGGA | + |
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Preference number: 4 (lower is better) Translates to: MLTAAVSCISVSIISYLTGTQMM*QAAEQG Trigger: TCCTTGTTCTGCTGCCTGTCACATCATCTGAGTGCC...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| CDS-3UTR TCA 90 bp | ATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTATAGAGATTATCTTACACATAATGTGGCACTCAGATaGTGTGACAGGCAGCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: IGREPSRQPCRYRDYLTHNVALR*CDRQQN Trigger: GTTCTGCTGCCTGTCACATCATCTGAGTGCCACATT...ATGTGTAAGATAATCTCTATACCTGCAAGGCTGTCTGGATGGCTCCCTACCAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| 3UTR CAA 72 bp | ATACCTCACTGTAGATTTCTCAGCTGCTTGGCTTATTaGAGCAGGAGGCATCCAGGAACTTCTGGAAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: IPHCRFLSCLAY*SRRHPGTSGRV Trigger: AACCCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | TTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTCTGGAAGGTTTCTTCCTTACTTGTaGAGTTCACCAGTGTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: FLSCLAYLSRRHPGTSGRFLPYL*SSPVFV Trigger: CACAAACACTGGTGAACTGCACAAGTAAGGAAGAAA...CCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGTCTAAAACAGGACAGTTCCACTCCCCCAGTGGTTCACCAATGAATGTTTCACCAGTGTTTGTGTaGCTTGTGATACTGTTAGTA | + |
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Preference number: 4 (lower is better) Translates to: LQSKTGQFHSPSGSPMNVSPVFV*LVILLV Trigger: TACTAACAGTATCACAAGGCACACAAACACTGGTGA...AACATTCATTGGTGAACCACTGGGGGAGTGGAACTGTCCTGTTTTAGACTGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | GGAGGCATCCAGGAACTTCTGGAAGGGTTTCAACCTCTCCAAGTATATGAACCATTTCTTCCTTACTTGTaGAGTTCACCAGTGTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: GGIQELLEGFQPLQVYEPFLPYL*SSPVFV Trigger: CACAAACACTGGTGAACTGCACAAGTAAGGAAGAAA...TGGTTCATATACTTGGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGTCTAAAACAGGACAGTTCCACTCCCCCAGTGGTTCACCAATGAATGTTTTTCTTCCTTACTTGTaGAGTTCACCAGTGTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: LQSKTGQFHSPSGSPMNVFLPYL*SSPVFV Trigger: CACAAACACTGGTGAACTGCACAAGTAAGGAAGAAA...AACATTCATTGGTGAACCACTGGGGGAGTGGAACTGTCCTGTTTTAGACTGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CCA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTGATACTGTTAGTAAGTaGACATTGAATTCTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: MLTAAVSCISVSIISYLTDTVSK*TLNSSL Trigger: CAGTGAAGAATTCAATGTCCACTTACTAACAGTATC...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CCA 90 bp | TTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTCTGGAAGGGATACTGTTAGTAAGTaGACATTGAATTCTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: FLSCLAYLSRRHPGTSGRDTVSK*TLNSSL Trigger: CAGTGAAGAATTCAATGTCCACTTACTAACAGTATC...CCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | GGAGGCATCCAGGAACTTCTGGAAGGGTTTCAACCTCTCCAAGTATATGAACCATTCATTTTAAGAAATTaGTTCAACTTGCGAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GGIQELLEGFQPLQVYEPFILRN*FNLRAA Trigger: TGCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAA...TGGTTCATATACTTGGAGAGGTTGAAACCCTTCCAGAAGTTCCTGGATGCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | CACTGTAGATTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTTCATTTTAAGAAATTaGTTCAACTTGCGAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HCRFLSCLAYLSRRHPGTFILRN*FNLRAA Trigger: TGCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAA...AGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | AAATCAGAATATTGTTCAATATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTTTTCTTCCTTACTTGTaGAGTTCACCAGTGTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: KSEYCSILVGSHPDSLAGFLPYL*SSPVFV Trigger: CACAAACACTGGTGAACTGCACAAGTAAGGAAGAAA...ACCTGCAAGGCTGTCTGGATGGCTCCCTACCAATATTGAACAATATTCTGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| CDS-3UTR CCA 90 bp | CTCATACCTCACTGTAGATTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATGATACTGTTAGTAAGTaGACATTGAATTCTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: LIPHCRFLSCLAYLSRRHDTVSK*TLNSSL Trigger: CAGTGAAGAATTCAATGTCCACTTACTAACAGTATC...ATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTATGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CCA 90 bp | ATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTATAGAGATTATCTTACACATTCTTTGTCTTTAATGTaGCACTCAGATGATGTGACA | + |
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Preference number: 4 (lower is better) Translates to: IGREPSRQPCRYRDYLTHSLSLM*HSDDVT Trigger: TGTCACATCATCTGAGTGCCACATTAAAGACAAAGA...ATGTGTAAGATAATCTCTATACCTGCAAGGCTGTCTGGATGGCTCCCTACCAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | AAATCAGAATATTGTTCAATATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTTTCATTTTAAGAAATTaGTTCAACTTGCGAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: KSEYCSILVGSHPDSLAGFILRN*FNLRAA Trigger: TGCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAA...ACCTGCAAGGCTGTCTGGATGGCTCCCTACCAATATTGAACAATATTCTGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| CDS-3UTR GCA 90 bp | AGTGTTAGAAACATTTGGAACGGTTTTAAAAGCATTGCAGTTGACATGATTGCATTCATTTTAAGAAATTaGTTCAACTTGCGAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SVRNIWNGFKSIAVDMIAFILRN*FNLRAA Trigger: TGCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAA...TGCAATCATGTCAACTGCAATGCTTTTAAAACCGTTCCAAATGTTTCTAACACT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | TTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTCTGGAAGGAGAAATTGCTTCAACTaGCGAGCAGCACGATTTAGA | + |
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Preference number: 5 (lower is better) Translates to: FLSCLAYLSRRHPGTSGRRNCFN*RAARFR Trigger: TCTAAATCGTGCTGCTCGCAAGTTGAAGCAATTTCT...CCTTCCAGAAGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTAGAAATTGCTTCAACTaGCGAGCAGCACGATTTAGA | + |
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Preference number: 5 (lower is better) Translates to: MLTAAVSCISVSIISYLTRNCFN*RAARFR Trigger: TCTAAATCGTGCTGCTCGCAAGTTGAAGCAATTTCT...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | CTCATACCTCACTGTAGATTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATTCAGTTCCTGTCATTTaGTCCAATTCATCGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: LIPHCRFLSCLAYLSRRHSVPVI*SNSSML Trigger: CAGCATCGATGAATTGGACAAAATGACAGGAACTGA...ATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTGAGGTATGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | ATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATACCTCACTGAAAAGCAGCTTCCTTaGTATCATCACATACATGTT | + |
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Preference number: 5 (lower is better) Translates to: MLTAAVSCISVSIISYLTEKQLP*YHHIHV Trigger: AACATGTATGTGATGATACAAAGGAAGCTGCTTTTC...AGTGAGGTATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | TATATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATCAGTTCCTGTCATTTaGTCCAATTCATCGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: YMYMLTAAVSCISVSIISSVPVI*SNSSML Trigger: CAGCATCGATGAATTGGACAAAATGACAGGAACTGA...TGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | TATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATATCAGTTCCTGTCATTTaGTCCAATTCATCGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: YVYADGSSQLHFCVHHLISVPVI*SNSSML Trigger: CAGCATCGATGAATTGGACAAAATGACAGGAACTGA...TATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | TATATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCAAGAAATTGCTTCAACTaGCGAGCAGCACGATTTAGA | + |
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Preference number: 5 (lower is better) Translates to: YMYMLTAAVSCISVSIISRNCFN*RAARFR Trigger: TCTAAATCGTGCTGCTCGCAAGTTGAAGCAATTTCT...TGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | CTCCAGTCTAAAACAGGACAGTTCCACTCCCCCAGTGGTTCACCAATGAATGTTATTCATTTTAAGAAATaGCTTCAACTTGCGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LQSKTGQFHSPSGSPMNVIHFKK*LQLASS Trigger: GCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAAT...AACATTCATTGGTGAACCACTGGGGGAGTGGAACTGTCCTGTTTTAGACTGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | CACTGTAGATTTCTCAGCTGCTTGGCTTATTTGAGCAGGAGGCATCCAGGAACTTATGCTTTACCTTCTTaGTCTTTAATGTGGCACTCA | + |
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Preference number: 5 (lower is better) Translates to: HCRFLSCLAYLSRRHPGTYALPS*SLMWHS Trigger: TGAGTGCCACATTAAAGACAAAGAAGGTAAAGCATA...AGTTCCTGGATGCCTCCTGCTCAAATAAGCCAAGCAGCTGAGAAATCTACAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| CDS TCA 90 bp | ACTCTCATATGCTTTACCTTCTTTGTCTTTAATGTGGCACTCAGATaGTGTGACAGGCAGCAGAACAAGGATCAGTGGAGGAATTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: TLICFTFFVFNVALR*CDRQQNKDQWRNSK Trigger: TTTGGAATTCCTCCACTGATCCTTGTTCTGCTGCCTGTCACATCATCTGAGTGCCACATTAAAGACAAAGAAGGTAAAGCATATGAGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | AAATCAGAATATTGTTCAATATTGGTAGGGAGCCATCCAGACAGCCTTGCAGGTTCAGTTCCTGTCATTTaGTCCAATTCATCGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: KSEYCSILVGSHPDSLAGSVPVI*SNSSML Trigger: CAGCATCGATGAATTGGACAAAATGACAGGAACTGA...ACCTGCAAGGCTGTCTGGATGGCTCCCTACCAATATTGAACAATATTCTGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168269.8 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | TATGTATATGCTGACGGCAGCAGTCAGCTGCATTTCTGTGTCCATCATCTCATAATTCATTTTAAGAAATaGCTTCAACTTGCGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: YVYADGSSQLHFCVHHLIIHFKK*LQLASS Trigger: GCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAAT...TATGAGATGATGGACACAGAAATGCAGCTGACTGCTGCCGTCAGCATATACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | AGTGTTAGAAACATTTGGAACGGTTTTAAAAGCATTGCAGTTGACATGATTGCAAGAAATTGCTTCAACTaGCGAGCAGCACGATTTAGA | + |
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Preference number: 5 (lower is better) Translates to: SVRNIWNGFKSIAVDMIARNCFN*RAARFR Trigger: TCTAAATCGTGCTGCTCGCAAGTTGAAGCAATTTCT...TGCAATCATGTCAACTGCAATGCTTTTAAAACCGTTCCAAATGTTTCTAACACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000168269.8 ENSMUST00000192202.6 ENSMUST00000194184.6 ENSMUST00000194279.6 |
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| CDS-3UTR CAA 90 bp | AAAGAATATTCAATATGTTTGAAGCATGTGGGAAGTTGGTACTTTCAGAAGTGGATTCATTTTAAGAAATaGCTTCAACTTGCGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: KEYSICLKHVGSWYFQKWIHFKK*LQLASS Trigger: GCTGCTCGCAAGTTGAAGCAATTTCTTAAAATGAAT...CCACTTCTGAAAGTACCAACTTCCCACATGCTTCAAACATATTGAATATTCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194279.6 |
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