RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL6RA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027947

Ensembl transcript IDs: ENSMUST00000029559.7, ENSMUST00000197679.5

Found 268 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTGAGGCAGAGCGAGGCAGCTGGGGCAGCCTTTGGAGCCCCTTTCTaGGGCCTCCTGAGGGTGCAGCTTGTGAGCCACTATCAGATGTGG +
Preference number: 1 (lower is better)
Translates to: VRQSEAAGAAFGAPF*GLLRVQLVSHYQMW
Trigger: CCACATCTGATAGTGGCTCACAAGCTGCACCCTCAGGAGGCCTCAGAAAGGGGCTCCAAAGGCTGCCCCAGCTGCCTCGCTCTGCCTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 90 bp AGAAACTTCCTGGAACTGGCACCCAACTACACTAGCAGCAGAGGCTaGAGAGACCTTTGGCAGACCCTCCCCAGCGCCAGCCCCAGGACC +
Preference number: 1 (lower is better)
Translates to: RNFLELAPNYTSSRG*RDLWQTLPSASPRT
Trigger: GGTCCTGGGGCTGGCGCTGGGGAGGGTCTGCCAAAGGTCTCTCCAGCCTCTGCTGCTAGTGTAGTTGGGTGCCAGTTCCAGGAAGTTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp TCTTGCCACCAGCTGTGGCATGGCCTTGATAGAGACAAAACGACATaGTTCCTGCCCCTGGAACAGGGCCAGCAGGCGTGGGCCTCCACG +
Preference number: 1 (lower is better)
Translates to: SCHQLWHGLDRDKTT*FLPLEQGQQAWAST
Trigger: CGTGGAGGCCCACGCCTGCTGGCCCTGTTCCAGGGGCAGGAACCATGTCGTTTTGTCTCTATCAAGGCCATGCCACAGCTGGTGGCAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp ACCAGCTGTGGCATGGCCTTGATAGAGACAAAACGACATGGTTCCTaGCCCTGGAACAGGGCCAGCAGGCGTGGGCCTCCACGAGAGTTG +
Preference number: 1 (lower is better)
Translates to: TSCGMALIETKRHGS*PWNRASRRGPPREL
Trigger: CAACTCTCGTGGAGGCCCACGCCTGCTGGCCCTGTTCCAGGGGCAGGAACCATGTCGTTTTGTCTCTATCAAGGCCATGCCACAGCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 90 bp TTGTACTGCTCCCAGACACCCCTTCTCTCAGAACCCAAACCAAGCTaGGGCTGGCCCTCAGCAGCCACCCCTACTCTTACCTGCAAAGCA +
Preference number: 1 (lower is better)
Translates to: LYCSQTPLLSEPKPS*GWPSAATPTLTCKA
Trigger: TGCTTTGCAGGTAAGAGTAGGGGTGGCTGCTGAGGGCCAGCCTCAGCTTGGTTTGGGTTCTGAGAGAAGGGGTGTCTGGGAGCAGTACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp CAATGGCCTGTGTTCCTCACAGCCCCTTCCTTCCTTCAGAGCCTATaGAGCACCAGCTGCACCTACTCAGAACCTGTGCAGAGCTCTTGT +
Preference number: 1 (lower is better)
Translates to: QWPVFLTAPSFLQSL*STSCTYSEPVQSSC
Trigger: ACAAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAAGGAAGGAAGGGGCTGTGAGGAACACAGGCCATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR TCA 90 bp TGGCCCTCAGCAGCCACCCCTACTCTTACCTGCAAAGCATCCACATaGTGGGTTTCCTTCTGTTTGGGACATAGAGAAGGCTGGGTCCCA +
Preference number: 1 (lower is better)
Translates to: WPSAATPTLTCKAST*WVSFCLGHREGWVP
Trigger: TGGGACCCAGCCTTCTCTATGTCCCAAACAGAAGGAAACCCATCATGTGGATGCTTTGCAGGTAAGAGTAGGGGTGGCTGCTGAGGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp TTCCTCACAGCCCCTTCCTTCCTTCAGAGCCTATGCAGCACCAGCTaGACCTACTCAGAACCTGTGCAGAGCTCTTGTGGGTTAGTGAAG +
Preference number: 1 (lower is better)
Translates to: FLTAPSFLQSLCSTS*TYSEPVQSSCGLVK
Trigger: CTTCACTAACCCACAAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAAGGAAGGAAGGGGCTGTGAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR GCA 90 bp AAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTaGTTGGACTTTAGGAGTTCGAGAGCTAAAAGGTGGCTTGGGGCA +
Preference number: 1 (lower is better)
Translates to: KLPPGLSGLGKRMAK*LDFRSSRAKRWLGA
Trigger: TGCCCCAAGCCACCTTTTAGCTCTCGAACTCCTAAAGTCCAAGCACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR GCA 90 bp TTCACAGATGTGAAGGAGCAGAGGCGGCTGCACTGTGAGCCGGCTTaGCAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATT +
Preference number: 1 (lower is better)
Translates to: FTDVKEQRRLHCEPA*QRDAKTGRYKCRQI
Trigger: AATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTGGCAAGCCGGCTCACAGTGCAGCCGCCTCTGCTCCTTCACATCTGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 90 bp TCTCAGGTTGGGCTCTTAAGGTTGTTTGCCCTCCTGTACTCCATGTaGCAGAGCCCTGCGATCCCGGACAGAATGGGAGGCGTTTTCAAA +
Preference number: 1 (lower is better)
Translates to: SQVGLLRLFALLYSM*QSPAIPDRMGGVFK
Trigger: TTTGAAAACGCCTCCCATTCTGTCCGGGATCGCAGGGCTCTGTCACATGGAGTACAGGAGGGCAAACAACCTTAAGAGCCCAACCTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp AGTGGAGGACAGACTCAGCCATCTGATGACCAAGAAAGCTCGGGATaGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACC +
Preference number: 1 (lower is better)
Translates to: SGGQTQPSDDQESSG*LSGSHSHLHSPVHT
Trigger: GGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCGAGCTTTCTTGGTCATCAGATGGCTGAGTCTGTCCTCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp GTCAGCCTGGGTCAGAGCAAATTTAGGTCCAAGAGTGGTGGGAGATaGTACTCTCAGGACAAGGTCCCACCCAGCTATGTTTACAGAGGC +
Preference number: 1 (lower is better)
Translates to: VSLGQSKFRSKSGGR*YSQDKVPPSYVYRG
Trigger: GCCTCTGTAAACATAGCTGGGTGGGACCTTGTCCTGAGAGTACCATCTCCCACCACTCTTGGACCTAAATTTGCTCTGACCCAGGCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 90 bp CATTTGGCTGCCTGGTCGCTGAATGCTGGTGTTAAGTGGTACTGTTaGCAAGGCAGCCTGTGGGCTGCAGAAACTCCAGTAAGAATGACC +
Preference number: 1 (lower is better)
Translates to: HLAAWSLNAGVKWYC*QGSLWAAETPVRMT
Trigger: GGTCATTCTTACTGGAGTTTCTGCAGCCCACAGGCTGCCTTGTCAACAGTACCACTTAACACCAGCATTCAGCGACCAGGCAGCCAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp TGTGAGCCGGCTTGCCAGAGAGACGCAAAGACAGGCAGATACAAATaGAGGCAGATTCTTGAGTTCAAGGTCAGCCTGGGTCAGAGCAAA +
Preference number: 1 (lower is better)
Translates to: CEPACQRDAKTGRYK*RQILEFKVSLGQSK
Trigger: TTTGCTCTGACCCAGGCTGACCTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTGGCAAGCCGGCTCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp CTCGATTTTCACTTGACTTGGTGTTTGGGCTACCGTTACTGCACTTaGTCCTCCAGGGTGGGCAGTGAGGGTTCATACAGTAGTGTGCAG +
Preference number: 1 (lower is better)
Translates to: LDFHLTWCLGYRYCT*SSRVGSEGSYSSVQ
Trigger: CTGCACACTACTGTATGAACCCTCACTGCCCACCCTGGAGGACCAAGTGCAGTAACGGTAGCCCAAACACCAAGTCAAGTGAAAATCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 90 bp GGCAGCCTGTGGGCTGCAGAAACTCCAGTAAGAATGACCCGAGGATaGAACACCTATTCAGCTTGCACAGAATTGAGACCAGAAGCAGCT +
Preference number: 1 (lower is better)
Translates to: GSLWAAETPVRMTRG*NTYSACTELRPEAA
Trigger: AGCTGCTTCTGGTCTCAATTCTGTGCAAGCTGAATAGGTGTTCCATCCTCGGGTCATTCTTACTGGAGTTTCTGCAGCCCACAGGCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp GACACCAAGGACACAGGAAAGATTCAGTGTGAGCTTTCAGCCAGGTaGGAAGGCAAGGCTCATGGAGAGAAAGGACTGTCGGCCAAATGT +
Preference number: 1 (lower is better)
Translates to: DTKDTGKIQCELSAR*EGKAHGEKGLSAKC
Trigger: ACATTTGGCCGACAGTCCTTTCTCTCCATGAGCCTTGCCTTCCCACCTGGCTGAAAGCTCACACTGAATCTTTCCTGTGTCCTTGGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp TTAACTCACAGAGATAATGAGCTATCTGGATTTCAGTCTTCCGTCTaGCTGCTCTGCCTGGCTTGGGTAACAGCAGAGCCCTGTGAGGGA +
Preference number: 1 (lower is better)
Translates to: LTHRDNELSGFQSSV*LLCLAWVTAEPCEG
Trigger: TCCCTCACAGGGCTCTGCTGTTACCCAAGCCAGGCAGAGCAGGCAGACGGAAGACTGAAATCCAGATAGCTCATTATCTCTGTGAGTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp CTGGAACAGGGCCAGCAGGCGTGGGCCTCCACGAGAGTTGACGGCTaGTGTGGGAGTAAGGCTTGTTTGTATAATAATGAACATATTTTC +
Preference number: 1 (lower is better)
Translates to: LEQGQQAWASTRVDG*CGSKACLYNNEHIF
Trigger: GAAAATATGTTCATTATTATACAAACAAGCCTTACTCCCACAGCAGCCGTCAACTCTCGTGGAGGCCCACGCCTGCTGGCCCTGTTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp TGTTCCTTAAGGCGCATTAAGGTTGCCATAGAAACTTCCTGGAACTaGCACCCAACTACACTAGCAGCAGAGGCTGGAGAGACCTTTGGC +
Preference number: 1 (lower is better)
Translates to: CSLRRIKVAIETSWN*HPTTLAAEAGETFG
Trigger: GCCAAAGGTCTCTCCAGCCTCTGCTGCTAGTGTAGTTGGGTGCCAGTTCCAGGAAGTTTCTATGGCAACCTTAATGCGCCTTAAGGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp TTTAAGGAACCGATTTCTGTCCTTCCTCTCTGTGACCTCCCCTGGTaGTCAGACCTCTTCAAAGTCACCCCTGAAAGTGCTATGCCTTTG +
Preference number: 1 (lower is better)
Translates to: FKEPISVLPLCDLPW*SDLFKVTPESAMPL
Trigger: CAAAGGCATAGCACTTTCAGGGGTGACTTTGAAGAGGTCTGAGCACCAGGGGAGGTCACAGAGAGGAAGGACAGAAATCGGTTCCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 90 bp TGCCTCTATCTGGTAATGCTGAACAATGCAAACGTGACAGACACATaGGCCTCTGATTTCCTTCCAGAAATCCCAGGCCTTGGTTTGGGG +
Preference number: 1 (lower is better)
Translates to: CLYLVMLNNANVTDT*ASDFLPEIPGLGLG
Trigger: CCCCAAACCAAGGCCTGGGATTTCTGGAAGGAAATCAGAGGCTCATGTGTCTGTCACGTTTGCATTGTTCAGCATTACCAGATAGAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp GAAACTCCAGTAAGAATGACCCGAGGATGGAACACCTATTCAGCTTaGACAGAATTGAGACCAGAAGCAGCTGAGGGCATACACCTGTGT +
Preference number: 1 (lower is better)
Translates to: ETPVRMTRGWNTYSA*TELRPEAAEGIHLC
Trigger: ACACAGGTGTATGCCCTCAGCTGCTTCTGGTCTCAATTCTGTGCAAGCTGAATAGGTGTTCCATCCTCGGGTCATTCTTACTGGAGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp AAATTTAAGGAACCGATTTCTGTCCTTCCTCTCTGTGACCTCCCCTaGTGCTCAGACCTCTTCAAAGTCACCCCTGAAAGTGCTATGCCT +
Preference number: 1 (lower is better)
Translates to: KFKEPISVLPLCDLP*CSDLFKVTPESAMP
Trigger: AGGCATAGCACTTTCAGGGGTGACTTTGAAGAGGTCTGAGCACCAGGGGAGGTCACAGAGAGGAAGGACAGAAATCGGTTCCTTAAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 90 bp TCCTTCTGTTTGGGACATAGAGAAGGCTGGGTCCCAAGTTTTTCTTaGCCAAGATCTTTTTCAGTGGAGGACAGACTCAGCCATCTGATG +
Preference number: 1 (lower is better)
Translates to: SFCLGHREGWVPSFS*PRSFSVEDRLSHLM
Trigger: CATCAGATGGCTGAGTCTGTCCTCCACTGAAAAAGATCTTGGGCAAGAAAAACTTGGGACCCAGCCTTCTCTATGTCCCAAACAGAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 90 bp CTACTCTTACCTGCAAAGCATCCACATGATGGGTTTCCTTCTGTTTaGGACATAGAGAAGGCTGGGTCCCAAGTTTTTCTTGCCCAAGAT +
Preference number: 1 (lower is better)
Translates to: LLLPAKHPHDGFPSV*DIEKAGSQVFLAQD
Trigger: ATCTTGGGCAAGAAAAACTTGGGACCCAGCCTTCTCTATGTCCCAAACAGAAGGAAACCCATCATGTGGATGCTTTGCAGGTAAGAGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 90 bp TTTCCCTGGAAACAAGATCTCCATCTGAGCATATGTTCACAAACCTaGCAGTGTTCCTTAAGGCGCATTAAGGTTGCCATAGAAACTTCC +
Preference number: 1 (lower is better)
Translates to: FPWKQDLHLSICSQT*QCSLRRIKVAIETS
Trigger: GGAAGTTTCTATGGCAACCTTAATGCGCCTTAAGGAACACTGTCAGGTTTGTGAACATATGCTCAGATGGAGATCTTGTTTCCAGGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp CAAGGCTGGGGTAAAGTAGTTCTCTCCGCCCTGGAAGAGGCACCCCCTACCATCGGTGGCTTGGGGCAGTaGGGCAGAGCGAGGCAGCTG +
Preference number: 2 (lower is better)
Translates to: QGWGKVVLSALEEAPPTIGGLGQ*GRARQL
Trigger: CAGCTGCCTCGCTCTGCCTCACTGCCCCAAGCCACC...GATGGTAGGGGGTGCCTCTTCCAGGGCGGAGAGAACTACTTTACCCCAGCCTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp TCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTTGTGTGCTGATCTCGTaGTGCCCTGCCAGCTGCCAG +
Preference number: 2 (lower is better)
Translates to: SEPSFHPASVASEREWQSCVLIS*CPASCQ
Trigger: CTGGCAGCTGGCAGGGCACCACGAGATCAGCACACA...ACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp TCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTAGCTGGGGCAGCCTTTaGAGCCCCTTTCTGAGGCCT +
Preference number: 2 (lower is better)
Translates to: SEPSFHPASVASEREWQSSWGSL*SPFLRP
Trigger: AGGCCTCAGAAAGGGGCTCCAAAGGCTGCCCCAGCT...ACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCCTTGGTCCTCCAGGGTaGGCAGTGAGGGTTCATACA +
Preference number: 2 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLLGPPG*AVRVHT
Trigger: TGTATGAACCCTCACTGCCCACCCTGGAGGACCAAG...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp CAAGGCTGGGGTAAAGTAGTTCTCTCCGCCCTGGAAGAGGCACCCCCTACCATCGATCGAAGAGGAAAATaGAGCCTCCGCAGCCAGCAG +
Preference number: 2 (lower is better)
Translates to: QGWGKVVLSALEEAPPTIDRRGK*SLRSQQ
Trigger: CTGCTGGCTGCGGAGGCTTCATTTTCCTCTTCGATC...GATGGTAGGGGGTGCCTCTTCCAGGGCGGAGAGAACTACTTTACCCCAGCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp AGCCTGGCCCACCCTGTTGGGCTCTGCTCCACGCTGGCTCCAAGCCAATGCCGGCATGAATACTTGGCCTaGTTTTCTGTCAACCTACAG +
Preference number: 2 (lower is better)
Translates to: SLAHPVGLCSTLAPSQCRHEYLA*FSVNLQ
Trigger: CTGTAGGTTGACAGAAAATCAGGCCAAGTATTCATG...CCGGCATTGGCTTGGAGCCAGCGTGGAGCAGAGCCCAACAGGGTGGGCCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp AATCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTGCTGATCTCGTGGTaGCCTGCCAGCTGCCAGGTA +
Preference number: 2 (lower is better)
Translates to: NRNQASTRPQWPRKENGKVLISW*PASCQV
Trigger: TACCTGGCAGCTGGCAGGGCACCACGAGATCAGCAC...TTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp CGGAGCCCAGGCAACCAGGCAAACCAGGCATTCCTTAAACCGGCACACCATAACACGGCAGGTGTGGGGTaGTGTGGTTGCAGAAGTCAC +
Preference number: 2 (lower is better)
Translates to: RSPGNQANQAFLKPAHHNTAGVG*CGCRSH
Trigger: GTGACTTCTGCAACCACAGCACCCCACACCTGCCGT...GTTATGGTGTGCCGGTTTAAGGAATGCCTGGTTTGCCTGGTTGCCTGGGCTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp AAGCATCAAAGTCTCACGGCAAGTCCAGAGGTGAAAGGGAAGCCCCTGGTTCAGGGAGCTTCACAGATGTaGAGGAGCAGAGGCGGCTGC +
Preference number: 2 (lower is better)
Translates to: KHQSLTASPEVKGKPLVQGASQM*RSRGGC
Trigger: GCAGCCGCCTCTGCTCCTTCACATCTGTGAAGCTCC...CTGAACCAGGGGCTTCCCTTTCACCTCTGGACTTGCCGTGAGACTTTGATGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp CGGAGCCCAGGCAACCAGGCAAACCAGGCATTCCTTAAACCGGCACACCATAACACCACCGGGCCCAGCTaGTTTCCAGATGTTGAGAAG +
Preference number: 2 (lower is better)
Translates to: RSPGNQANQAFLKPAHHNTTGPS*FPDVEK
Trigger: CTTCTCAACATCTGGAAAGCAGCTGGGCCCGGTGGT...GTTATGGTGTGCCGGTTTAAGGAATGCCTGGTTTGCCTGGTTGCCTGGGCTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGGACACCCTTCCTGCCTaGGCCTGGGAGTGTTCACAG +
Preference number: 2 (lower is better)
Translates to: QGKASEATQSNVKQGRPRDTLPA*AWECSQ
Trigger: CTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTC...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp ATGTCGACTTTCCTAGTAGCTCCAGTCCAGTTGAAATCAGAATGGGCAAGGCTGGCAGAGCGAGGCAGCTaGGGCAGCCTTTGGAGCCCC +
Preference number: 2 (lower is better)
Translates to: MSTFLVAPVQLKSEWARLAERGS*GSLWSP
Trigger: GGGGCTCCAAAGGCTGCCCCAGCTGCCTCGCTCTGC...CAGCCTTGCCCATTCTGATTTCAACTGGACTGGAGCTACTAGGAAAGTCGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CGGAGCCCAGGCAACCAGGCAAACCAGGCATTCCTTAAACCGGCACACCATAACCTAAGCACCACACTGTaGCTCTGTGGTCTCCTCGGT +
Preference number: 2 (lower is better)
Translates to: RSPGNQANQAFLKPAHHNLSTTL*LCGLLG
Trigger: ACCGAGGAGACCACAGAGCCACAGTGTGGTGCTTAG...GTTATGGTGTGCCGGTTTAAGGAATGCCTGGTTTGCCTGGTTGCCTGGGCTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 90 bp CCAAATGAGGACACAGGGATCCTTGCTGGAGAGAGTGGTTCAGGGTaGGAGAGCACACGGCTGCAGAAAGGGGCATCAAGGTCACCAACA +
Preference number: 2 (lower is better)
Translates to: PNEDTGILAGESGSG*ESTRLQKGASRSPT
Trigger: TGTTGGTGACCTTGATGCCCCTTTCTGCAGCCGTGTGCTCTCCAACCCTGAACCACTCTCTCCAGCAAGGATCCCTGTGTCCTCATTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp TCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTCTATGCAGCACCAGCTaGACCTACTCAGAACCTGTG +
Preference number: 2 (lower is better)
Translates to: SEPSFHPASVASEREWQSLCSTS*TYSEPV
Trigger: CACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAG...ACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGCTCCGCAGCCAGCAGTaGCTGGGGTCATCATTCACA +
Preference number: 2 (lower is better)
Translates to: QGKASEATQSNVKQGRPRLRSQQ*LGSSFT
Trigger: TGTGAATGATGACCCCAGGCACTGCTGGCTGCGGAG...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp GTGGAGCTGACGGGCATCTCTATTCAGTCATCACAAGCTGTCTTCACAATGGCCTGTGTGCTGATCTCGTaGTGCCCTGCCAGCTGCCAG +
Preference number: 2 (lower is better)
Translates to: VELTGISIQSSQAVFTMACVLIS*CPASCQ
Trigger: CTGGCAGCTGGCAGGGCACCACGAGATCAGCACACA...GGCCATTGTGAAGACAGCTTGTGATGACTGAATAGAGATGCCCGTCAGCTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CAAGGCTGGGGTAAAGTAGTTCTCTCCGCCCTGGAAGAGGCACCCCCTACCATCAAGCTGTCTTCACAATaGCCTGTGTTCCTCACAGCC +
Preference number: 2 (lower is better)
Translates to: QGWGKVVLSALEEAPPTIKLSSQ*PVFLTA
Trigger: GGCTGTGAGGAACACAGGCCATTGTGAAGACAGCTT...GATGGTAGGGGGTGCCTCTTCCAGGGCGGAGAGAACTACTTTACCCCAGCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CCATTCCAGCTTGCTACACACTGTACCAGTCCTTTCCCTGGAAACAAGATCTCCCTGTCCCTCCCACTTTaGCAGACCCTCCCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: PFQLATHCTSPFPGNKISLSLPL*QTLPSW
Trigger: CCAGCTGGGGAGGGTCTGCCAAAGTGGGAGGGACAG...GGAGATCTTGTTTCCAGGGAAAGGACTGGTACAGTGTGTAGCAAGCTGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 90 bp AACAGCTATGGGACCAGAGCTCATACTAAGGAAACAGCACCTGCCTaGGGGTGGAGAAGAACAGCTGTGCTTCGGGAACAGGGGTCCAAG +
Preference number: 2 (lower is better)
Translates to: NSYGTRAHTKETAPA*GWRRTAVLREQGSK
Trigger: CTTGGACCCCTGTTCCCGAAGCACAGCTGTTCTTCTCCACCCCAAGGCAGGTGCTGTTTCCTTAGTATGAGCTCTGGTCCCATAGCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp GCAAGGAAGGCCAAGGTGGCAGTGAGGTGTAGCAGGAAGCAGACACCCTTCCTGCCTCTTCCAGACTCTTaGGAGAAACAGGCAACAGTT +
Preference number: 2 (lower is better)
Translates to: ARKAKVAVRCSRKQTPFLPLPDS*EKQATV
Trigger: AACTGTTGCCTGTTTCTCTCAAGAGTCTGGAAGAGG...CAGGAAGGGTGTCTGCTTCCTGCTACACCTCACTGCCACCTTGGCCTTCCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp CGGAGCCCAGGCAACCAGGCAAACCAGGCATTCCTTAAACCGGCACACCATAACAGGCAGCCTGTGGGCTaGAGAAACTCCAGTAAGAAT +
Preference number: 2 (lower is better)
Translates to: RSPGNQANQAFLKPAHHNRQPVG*RNSSKN
Trigger: ATTCTTACTGGAGTTTCTGCAGCCCACAGGCTGCCT...GTTATGGTGTGCCGGTTTAAGGAATGCCTGGTTTGCCTGGTTGCCTGGGCTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGTCGAGAGCTAAAAGGTaGCTTGGGGCAGTGAGGCAG +
Preference number: 2 (lower is better)
Translates to: QGKASEATQSNVKQGRPRSRAKR*LGAVRQ
Trigger: CTGCCTCACTGCCCCAAGCCACCTTTTAGCTCTCGA...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTTGAGTTCAAGGGCTCTGCTCCACGCTaGCTCCAAGCCAATGCCGGC +
Preference number: 2 (lower is better)
Translates to: QRDAKTGRYKCRQILEFKGSAPR*LQANAG
Trigger: GCCGGCATTGGCTTGGAGCCAGCGTGGAGCAGAGCC...CTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp GTTTTCCAGAAGCTATTCAGAGAAGGTTGTCTGAAGAGCGCGCACGGCTCTTTGTCCGTCTGCCTGCTCTaGCTGGCTTGGGTAACAGCA +
Preference number: 2 (lower is better)
Translates to: VFQKLFREGCLKSAHGSLSVCLL*LAWVTA
Trigger: TGCTGTTACCCAAGCCAGGCAGAGCAGGCAGACGGA...CAAAGAGCCGTGCGCGCTCTTCAGACAACCTTCTCTGAATAGCTTCTGGAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGGCAGCCAGCAGTGCCTaGGGTCATCATTCACATTTA +
Preference number: 2 (lower is better)
Translates to: QGKASEATQSNVKQGRPRAASSA*GHHSHL
Trigger: TAAATGTGAATGATGACCCCAGGCACTGCTGGCTGC...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp CCATTCCAGCTTGCTACACACTGTACCAGTCCTTTCCCTGGAAACAAGATCTCCCTTGGTCCTCCAGGGTaGGCAGTGAGGGTTCATACA +
Preference number: 2 (lower is better)
Translates to: PFQLATHCTSPFPGNKISLGPPG*AVRVHT
Trigger: TGTATGAACCCTCACTGCCCACCCTGGAGGACCAAG...GGAGATCTTGTTTCCAGGGAAAGGACTGGTACAGTGTGTAGCAAGCTGGAATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCTTTAAAAACTGCTTGTaGGAAATTGTCACTCGCGTA +
Preference number: 2 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLFKNCL*EIVTRV
Trigger: TACGCGAGTGACAATTTCTCACAAGCAGTTTTTAAA...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGCCTCTTCCAGACTCTTaGGAGAAACAGGCAACAGTT +
Preference number: 2 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKPLPDS*EKQATV
Trigger: AACTGTTGCCTGTTTCTCTCAAGAGTCTGGAAGAGG...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp TTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTTAATCTATCGAGAGCTAAAAGGTaGCTTGGGGCAGTGAGGCAG +
Preference number: 2 (lower is better)
Translates to: FSKTAGVGCCGCRSHFNLSRAKR*LGAVRQ
Trigger: CTGCCTCACTGCCCCAAGCCACCTTTTAGCTCTCGA...TAGATTAAAGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp GTTTTCCAGAAGCTATTCAGAGAAGGTTGTCTGAAGAGCGCGCACGGCTCTTTGCCCTCGATTTTCACTTaGCTTGGTGTTTGGGCTACC +
Preference number: 2 (lower is better)
Translates to: VFQKLFREGCLKSAHGSLPSIFT*LGVWAT
Trigger: GGTAGCCCAAACACCAAGTCAAGTGAAAATCGAGGG...CAAAGAGCCGTGCGCGCTCTTCAGACAACCTTCTCTGAATAGCTTCTGGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp GTTTTCCAGAAGCTATTCAGAGAAGGTTGTCTGAAGAGCGCGCACGGCTCTTTGCTCACTGTAGGCTCTTaGGATGATGCTGCCTCTACA +
Preference number: 2 (lower is better)
Translates to: VFQKLFREGCLKSAHGSLLTVGS*DDAAST
Trigger: TGTAGAGGCAGCATCATCCCAAGAGCCTACAGTGAG...CAAAGAGCCGTGCGCGCTCTTCAGACAACCTTCTCTGAATAGCTTCTGGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 90 bp GCCAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTaGAGTTCAAGGTCAGCCTGGGTCAGAGCAAATTTAGGTCCAAGA +
Preference number: 2 (lower is better)
Translates to: ARETQRQADTNAGRF*SSRSAWVRANLGPR
Trigger: TCTTGGACCTAAATTTGCTCTGACCCAGGCTGACCTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp CAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTTGAGTTCAAGCTATGCAGCACCAGCTaGACCTACTCAGAACCTGTG +
Preference number: 2 (lower is better)
Translates to: QRDAKTGRYKCRQILEFKLCSTS*TYSEPV
Trigger: CACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAG...CTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp AAGCATCAAAGTCTCACGGCAAGTCCAGAGGTGAAAGGGAAGCCCCTGGTTCAGGATTTTCACTTGACTTaGTGTTTGGGCTACCGTTAC +
Preference number: 2 (lower is better)
Translates to: KHQSLTASPEVKGKPLVQDFHLT*CLGYRY
Trigger: GTAACGGTAGCCCAAACACCAAGTCAAGTGAAAATC...CTGAACCAGGGGCTTCCCTTTCACCTCTGGACTTGCCGTGAGACTTTGATGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp CAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTTGAGTTCAAGAGGAAAGATTCAGTGTaGGCTTTCAGCCAGGTGGGA +
Preference number: 2 (lower is better)
Translates to: QRDAKTGRYKCRQILEFKRKDSV*AFSQVG
Trigger: TCCCACCTGGCTGAAAGCTCACACTGAATCTTTCCT...CTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp GTTTTCCAGAAGCTATTCAGAGAAGGTTGTCTGAAGAGCGCGCACGGCTCTTTGATATGTTCACAAACCTaGCAGTGTTCCTTAAGGCGC +
Preference number: 2 (lower is better)
Translates to: VFQKLFREGCLKSAHGSLICSQT*QCSLRR
Trigger: GCGCCTTAAGGAACACTGTCAGGTTTGTGAACATAT...CAAAGAGCCGTGCGCGCTCTTCAGACAACCTTCTCTGAATAGCTTCTGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCTTTGGAGCCCCTTTCTaGGGCCTCCTGAGGGTGCAG +
Preference number: 2 (lower is better)
Translates to: TLERNRQQFSKNQNESAFFGAPF*GLLRVQ
Trigger: CTGCACCCTCAGGAGGCCTCAGAAAGGGGCTCCAAA...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGTTTAAAAACTGCTTGTaGGAAATTGTCACTCGCGTA +
Preference number: 2 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKFKNCL*EIVTRV
Trigger: TACGCGAGTGACAATTTCTCACAAGCAGTTTTTAAA...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR GCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCGTGCTGATCTCGTGGTaGCCTGCCAGCTGCCAGGTA +
Preference number: 2 (lower is better)
Translates to: TLERNRQQFSKNQNESAFVLISW*PASCQV
Trigger: TACCTGGCAGCTGGCAGGGCACCACGAGATCAGCAC...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCAGCTGGGGCAGCCTTTaGAGCCCCTTTCTGAGGCCT +
Preference number: 2 (lower is better)
Translates to: TLERNRQQFSKNQNESAFSWGSL*SPFLRP
Trigger: AGGCCTCAGAAAGGGGCTCCAAAGGCTGCCCCAGCT...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 90 bp TGGGCCTCCACGAGAGTTGACGGCTGCTGTGGGAGTAAGGCTTGTTaGTATAATAATGAACATATTTTCATGTTCCTCCAAGGAATGTCC +
Preference number: 2 (lower is better)
Translates to: WASTRVDGCCGSKAC*YNNEHIFMFLQGMS
Trigger: GGACATTCCTTGGAGGAACATGAAAATATGTTCATTATTATACAAACAAGCCTTACTCCCACAGCAGCCGTCAACTCTCGTGGAGGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR TCA 90 bp ACAAGATCTCCATCTGAGCATATGTTCACAAACCTGACAGTGTTCCTTAAGGCGCTGCTTTCCAGATGTTaGGAAGGAAATCGGAACCAA +
Preference number: 2 (lower is better)
Translates to: TRSPSEHMFTNLTVFLKALLSRC*EGNRNQ
Trigger: TTGGTTCCGATTTCCTTCTCAACATCTGGAAAGCAG...CGCCTTAAGGAACACTGTCAGGTTTGTGAACATATGCTCAGATGGAGATCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 90 bp AAACATGTAGCATTGAGGTATCCTGTTTTTAACGGATATGATCTCTaGCCAAAGTCTCTCTGTCCATTCCAGCTTGCTACACACTGTACC +
Preference number: 2 (lower is better)
Translates to: KHVALRYPVFNGYDL*PKSLCPFQLATHCT
Trigger: GGTACAGTGTGTAGCAAGCTGGAATGGACAGAGAGACTTTGGCAAGAGATCATATCCGTTAAAAACAGGATACCTCAATGCTACATGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCCAGAATGGGCAAGGCTaGGGTAAAGTAGTTCTCTCC +
Preference number: 2 (lower is better)
Translates to: TLERNRQQFSKNQNESAFQNGQG*GKVVLS
Trigger: GGAGAGAACTACTTTACCCCAGCCTTGCCCATTCTG...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 90 bp TCACGATCTGTAACATTTTTAATAAATTTCCCTTTCACAGCAGTTTaGCTACCCTTGAGTCCCAAAAACTTAGCAAAGGAGGAAAGAAGG +
Preference number: 2 (lower is better)
Translates to: SRSVTFLINFPFTAV*LPLSPKNLAKEERR
Trigger: CCTTCTTTCCTCCTTTGCTAAGTTTTTGGGACTCAAGGGTAGCAAAACTGCTGTGAAAGGGAAATTTATTAAAAATGTTACAGATCGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp GGCAGTGAGGCAGAGCGAGGCAGCTGGGGCAGCCTTTaGAGCCCCTTTCTGAGGCCTCCTGAGGGTGCAGCT +
Preference number: 3 (lower is better)
Translates to: GSEAERGSWGSL*SPFLRPPEGAA
Trigger: AGCTGCACCCTCAGGAGGCCTCAGAAAGGGGCTCCAAAGGCTGCCCCAGCTGCCTCGCTCTGCCTCACTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp CAGCTGCACCTACTCAGAACCTGTGCAGAGCTCTTGTaGGTTAGTGAAGCTGCAGCCCCGCCCGCCCCACCC +
Preference number: 3 (lower is better)
Translates to: QLHLLRTCAELL*VSEAAAPPAPP
Trigger: GGGTGGGGCGGGCGGGGCTGCAGCTTCACTAACCCACAAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp AACCGGCACACCATAACTAAGCCTGGCCCACCCTGTTaGGCTCTGCTCCACGCTGGCTCCAAGCCAATGCCG +
Preference number: 3 (lower is better)
Translates to: NRHTITKPGPPC*ALLHAGSKPMP
Trigger: CGGCATTGGCTTGGAGCCAGCGTGGAGCAGAGCCCAACAGGGTGGGCCAGGCTTAGTTATGGTGTGCCGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp CTGGAACTGGCACCCAACTACACTAGCAGCAGAGGCTaGAGAGACCTTTGGCAGACCCTCCCCAGCGCCAGC +
Preference number: 3 (lower is better)
Translates to: LELAPNYTSSRG*RDLWQTLPSAS
Trigger: GCTGGCGCTGGGGAGGGTCTGCCAAAGGTCTCTCCAGCCTCTGCTGCTAGTGTAGTTGGGTGCCAGTTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCCTACCGTTACTGCACTaGGTCCTCCAGGGTGGGCAG +
Preference number: 3 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLLPLLH*VLQGGQ
Trigger: CTGCCCACCCTGGAGGACCAAGTGCAGTAACGGTAG...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR GCA 72 bp ACAAGCAGAGGGCATGGGGTGACAGCTTCCGAGCTCTaGCCGTCTCGTCTCGTGGTGGTGGCAGAAAAGGCA +
Preference number: 3 (lower is better)
Translates to: TSRGHGVTASEL*PSRLVVVAEKA
Trigger: TGCCTTTTCTGCCACCACCACGAGACGAGACGGGCAGAGCTCGGAAGCTGTCACCCCATGCCCTCTGCTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp GCCTTGATAGAGACAAAACGACATGGTTCCTGCCCCTaGAACAGGGCCAGCAGGCGTGGGCCTCCACGAGAG +
Preference number: 3 (lower is better)
Translates to: ALIETKRHGSCP*NRASRRGPPRE
Trigger: CTCTCGTGGAGGCCCACGCCTGCTGGCCCTGTTCCAGGGGCAGGAACCATGTCGTTTTGTCTCTATCAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp GCAGTGGGTGCCACCCAACCCCAGCTTCATCTGAGTTaGGGGCCTTTGCACACTTCTTGCCACCAGCTGTGG +
Preference number: 3 (lower is better)
Translates to: AVGATQPQLHLS*GPLHTSCHQLW
Trigger: CCACAGCTGGTGGCAAGAAGTGTGCAAAGGCCCCCAACTCAGATGAAGCTGGGGTTGGGTGGCACCCACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp TCCCAGACACCCCTTCTCTCAGAACCCAAACCAAGCTaGGGCTGGCCCTCAGCAGCCACCCCTACTCTTACC +
Preference number: 3 (lower is better)
Translates to: SQTPLLSEPKPS*GWPSAATPTLT
Trigger: GGTAAGAGTAGGGGTGGCTGCTGAGGGCCAGCCTCAGCTTGGTTTGGGTTCTGAGAGAAGGGGTGTCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp CTTCACAGATGTGAAGGAGCAGAGGCGGCTGCACTGTaGGCCGGCTTGCCAGAGAGACGCAAAGACAGGCAG +
Preference number: 3 (lower is better)
Translates to: LHRCEGAEAAAL*AGLPERRKDRQ
Trigger: CTGCCTGTCTTTGCGTCTCTCTGGCAAGCCGGCTCACAGTGCAGCCGCCTCTGCTCCTTCACATCTGTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp CAGCTGTGGCATGGCCTTGATAGAGACAAAACGACATaGTTCCTGCCCCTGGAACAGGGCCAGCAGGCGTGG +
Preference number: 3 (lower is better)
Translates to: QLWHGLDRDKTT*FLPLEQGQQAW
Trigger: CCACGCCTGCTGGCCCTGTTCCAGGGGCAGGAACCATGTCGTTTTGTCTCTATCAAGGCCATGCCACAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGCAGCTGGGGCAGCCTTaGGAGCCCCTTTCTGAGGCC +
Preference number: 3 (lower is better)
Translates to: QGKASEATQSNVKQGRPRQLGQP*EPLSEA
Trigger: GGCCTCAGAAAGGGGCTCCAAAGGCTGCCCCAGCTG...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGCCTGCTCTGCCTGGCTaGGGTAACAGCAGAGCCCTG +
Preference number: 3 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKPALPG*GNSRAL
Trigger: CAGGGCTCTGCTGTTACCCAAGCCAGGCAGAGCAGG...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp AGTCACCACCACCGGGCCCAGCTGCTTTCCAGATGTTaGGAAGGAAATCGGAACCAAGCTTCCACCCGGCCT +
Preference number: 3 (lower is better)
Translates to: SHHHRAQLLSRC*EGNRNQASTRP
Trigger: AGGCCGGGTGGAAGCTTGGTTCCGATTTCCTTCTCAACATCTGGAAAGCAGCTGGGCCCGGTGGTGGTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR TCA 72 bp GGGCTCTTAAGGTTGTTTGCCCTCCTGTACTCCATGTaGCAGAGCCCTGCGATCCCGGACAGAATGGGAGGC +
Preference number: 3 (lower is better)
Translates to: GLLRLFALLYSM*QSPAIPDRMGG
Trigger: GCCTCCCATTCTGTCCGGGATCGCAGGGCTCTGTCACATGGAGTACAGGAGGGCAAACAACCTTAAGAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp GTGAAGGAGCAGAGGCGGCTGCACTGTGAGCCGGCTTaGCAGAGAGACGCAAAGACAGGCAGATACAAATGC +
Preference number: 3 (lower is better)
Translates to: VKEQRRLHCEPA*QRDAKTGRYKC
Trigger: GCATTTGTATCTGCCTGTCTTTGCGTCTCTCTGGCAAGCCGGCTCACAGTGCAGCCGCCTCTGCTCCTTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp AAACAGCACCTGCCTTGGGGTGGAGAAGAACAGCTGTaGTTCGGGAACAGGGGTCCAAGTGAAGGGCAGTGG +
Preference number: 3 (lower is better)
Translates to: KQHLPWGGEEQL*FGNRGPSEGQW
Trigger: CCACTGCCCTTCACTTGGACCCCTGTTCCCGAAGCACAGCTGTTCTTCTCCACCCCAAGGCAGGTGCTGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp CCTTTGCCCGGGGGATCAGACTCCCAGTTGGCCGGCTaGCAGCCTCAGTTTAGCAAACCAAATGAGGACACA +
Preference number: 3 (lower is better)
Translates to: PLPGGSDSQLAG*QPQFSKPNEDT
Trigger: TGTGTCCTCATTTGGTTTGCTAAACTGAGGCTGGCAGCCGGCCAACTGGGAGTCTGATCCCCCGGGCAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp GTGCTATGCCTTTGCCCGGGGGATCAGACTCCCAGTTaGCCGGCTGCCAGCCTCAGTTTAGCAAACCAAATG +
Preference number: 3 (lower is better)
Translates to: VLCLCPGDQTPS*PAASLSLANQM
Trigger: CATTTGGTTTGCTAAACTGAGGCTGGCAGCCGGCCAACTGGGAGTCTGATCCCCCGGGCAAAGGCATAGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp GTGTTCCTCACAGCCCCTTCCTTCCTTCAGAGCCTATaGAGCACCAGCTGCACCTACTCAGAACCTGTGCAG +
Preference number: 3 (lower is better)
Translates to: VFLTAPSFLQSL*STSCTYSEPVQ
Trigger: CTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAAGGAAGGAAGGGGCTGTGAGGAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp GGATTTCAGTCTTCCGTCTGCCTGCTCTGCCTGGCTTaGGTAACAGCAGAGCCCTGTGAGGGACTGAAGAAC +
Preference number: 3 (lower is better)
Translates to: GFQSSVCLLCLA*VTAEPCEGLKN
Trigger: GTTCTTCAGTCCCTCACAGGGCTCTGCTGTTACCCAAGCCAGGCAGAGCAGGCAGACGGAAGACTGAAATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp ACACAGGGATCCTTGCTGGAGAGAGTGGTTCAGGGTTaGAGAGCACACGGCTGCAGAAAGGGGCATCAAGGT +
Preference number: 3 (lower is better)
Translates to: TQGSLLERVVQG*RAHGCRKGHQG
Trigger: ACCTTGATGCCCCTTTCTGCAGCCGTGTGCTCTCCAACCCTGAACCACTCTCTCCAGCAAGGATCCCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp AGGGTGGGCAGTGAGGGTTCATACAGTAGTGTGCAGTaGGCGGCCTCTTCCAGACTCTTGAGAGAAACAGGC +
Preference number: 3 (lower is better)
Translates to: RVGSEGSYSSVQ*AASSRLLRETG
Trigger: GCCTGTTTCTCTCAAGAGTCTGGAAGAGGCCGCTCACTGCACACTACTGTATGAACCCTCACTGCCCACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR TCA 72 bp CAGTCAAACGTAAAGCAAGGAAGGCCAAGGTGGCAGTaGGGTGTAGCAGGAAGCAGACACCCTTCCTGCCTG +
Preference number: 3 (lower is better)
Translates to: QSNVKQGRPRWQ*GVAGSRHPSCL
Trigger: CAGGCAGGAAGGGTGTCTGCTTCCTGCTACACCTCACTGCCACCTTGGCCTTCCTTGCTTTACGTTTGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp CGCCTGCCCCTCCCACCTCACCTCACTGTAGGCTCTTaGGATGATGCTGCCTCTACAAAGGAAAAGGTTTCT +
Preference number: 3 (lower is better)
Translates to: RLPLPPHLTVGS*DDAASTKEKVS
Trigger: AGAAACCTTTTCCTTTGTAGAGGCAGCATCATCCCAAGAGCCTACAGTGAGGTGAGGTGGGAGGGGCAGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp TCTAAGCACCACACTGTGGCTCTGTGGTCTCCTCGGTaGCCACTAACATCACTGGATTCCTCAAAGCCCCAG +
Preference number: 3 (lower is better)
Translates to: SKHHTVALWSPR*PLTSLDSSKPQ
Trigger: CTGGGGCTTTGAGGAATCCAGTGATGTTAGTGGTCACCGAGGAGACCACAGAGCCACAGTGTGGTGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR TCA 72 bp GCCTGGTCGCTGAATGCTGGTGTTAAGTGGTACTGTTaGCAAGGCAGCCTGTGGGCTGCAGAAACTCCAGTA +
Preference number: 3 (lower is better)
Translates to: AWSLNAGVKWYC*QGSLWAAETPV
Trigger: TACTGGAGTTTCTGCAGCCCACAGGCTGCCTTGTCAACAGTACCACTTAACACCAGCATTCAGCGACCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp CCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTaGTTGGACTTTAGGAGTTCGAGAGCTAAAAGGTGG +
Preference number: 3 (lower is better)
Translates to: PGLSGLGKRMAK*LDFRSSRAKRW
Trigger: CCACCTTTTAGCTCTCGAACTCCTAAAGTCCAAGCACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR GCA 72 bp GGCCCTGAGATATTAGTCACCACCACCGGGCCCAGCTaGTTTCCAGATGTTGAGAAGGAAATCGGAACCAAG +
Preference number: 3 (lower is better)
Translates to: GPEILVTTTGPS*FPDVEKEIGTK
Trigger: CTTGGTTCCGATTTCCTTCTCAACATCTGGAAAGCAGCTGGGCCCGGTGGTGGTGACTAATATCTCAGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR GCA 72 bp GGCCAGCAGGCGTGGGCCTCCACGAGAGTTGACGGCTaGTGTGGGAGTAAGGCTTGTTTGTATAATAATGAA +
Preference number: 3 (lower is better)
Translates to: GQQAWASTRVDG*CGSKACLYNNE
Trigger: TTCATTATTATACAAACAAGCCTTACTCCCACAGCAGCCGTCAACTCTCGTGGAGGCCCACGCCTGCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp AGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATaGCAAAGTGCTTGGACTTTAGGAGTTCGAGAGCTA +
Preference number: 3 (lower is better)
Translates to: SFHPASVASERE*QSAWTLGVREL
Trigger: TAGCTCTCGAACTCCTAAAGTCCAAGCACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp GAAGGAAATCGGAACCAAGCTTCCACCCGGCCTCAGTaGCCTCGGAAAGAGAATGGCAAAGTGCTTGGACTT +
Preference number: 3 (lower is better)
Translates to: EGNRNQASTRPQ*PRKENGKVLGL
Trigger: AAGTCCAAGCACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATTTCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp TCTCGTCTCGTGGTGGTGGCAGAAAAGGCAAGTTACTaGCATAGTTCAGTAAGACGGCAGGTGTGGGGTGCT +
Preference number: 3 (lower is better)
Translates to: SRLVVVAEKASY*HSSVRRQVWGA
Trigger: AGCACCCCACACCTGCCGTCTTACTGAACTATGCCAGTAACTTGCCTTTTCTGCCACCACCACGAGACGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGACCTGTGCAGAGCTCTaGTGGGTTAGTGAAGCTGCA +
Preference number: 3 (lower is better)
Translates to: QGKASEATQSNVKQGRPRTCAEL*WVSEAA
Trigger: TGCAGCTTCACTAACCCACAAGAGCTCTGCACAGGT...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR TCA 72 bp CCCGAGGATGGAACACCTATTCAGCTTGCACAGAATTaGGACCAGAAGCAGCTGAGGGCATACACCTGTGTG +
Preference number: 3 (lower is better)
Translates to: PEDGTPIQLAQN*DQKQLRAYTCV
Trigger: CACACAGGTGTATGCCCTCAGCTGCTTCTGGTCTCAATTCTGTGCAAGCTGAATAGGTGTTCCATCCTCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp AGAGATAATGAGCTATCTGGATTTCAGTCTTCCGTCTaGCTGCTCTGCCTGGCTTGGGTAACAGCAGAGCCC +
Preference number: 3 (lower is better)
Translates to: RDNELSGFQSSV*LLCLAWVTAEP
Trigger: GGGCTCTGCTGTTACCCAAGCCAGGCAGAGCAGGCAGACGGAAGACTGAAATCCAGATAGCTCATTATCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp CAACTCAGACTCTCAGGTTGGGCTCTTAAGGTTGTTTaGCCTCCTGTACTCCATGTGACAGAGCCCTGCGAT +
Preference number: 3 (lower is better)
Translates to: QLRLSGWALKVV*PPVLHVTEPCD
Trigger: ATCGCAGGGCTCTGTCACATGGAGTACAGGAGGGCAAACAACCTTAAGAGCCCAACCTGAGAGTCTGAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp GACACAGGAAAGATTCAGTGTGAGCTTTCAGCCAGGTaGGAAGGCAAGGCTCATGGAGAGAAAGGACTGTCG +
Preference number: 3 (lower is better)
Translates to: DTGKIQCELSAR*EGKAHGEKGLS
Trigger: CGACAGTCCTTTCTCTCCATGAGCCTTGCCTTCCCACCTGGCTGAAAGCTCACACTGAATCTTTCCTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp CAGACTCAGCCATCTGATGACCAAGAAAGCTCGGGATaGCTCTCAGGATCCCATTCTCACCTCCATAGTCCA +
Preference number: 3 (lower is better)
Translates to: QTQPSDDQESSG*LSGSHSHLHSP
Trigger: TGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCGAGCTTTCTTGGTCATCAGATGGCTGAGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp GAACCGATTTCTGTCCTTCCTCTCTGTGACCTCCCCTaGTGCTCAGACCTCTTCAAAGTCACCCCTGAAAGT +
Preference number: 3 (lower is better)
Translates to: EPISVLPLCDLP*CSDLFKVTPES
Trigger: ACTTTCAGGGGTGACTTTGAAGAGGTCTGAGCACCAGGGGAGGTCACAGAGAGGAAGGACAGAAATCGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp TGGCATAGTTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTCCCTCGATTTTCACTaGACTTGGTGTTTGGGCTAC +
Preference number: 3 (lower is better)
Translates to: WHSSVRRQVWGAVVAEVTSLDFH*TWCLGY
Trigger: GTAGCCCAAACACCAAGTCAAGTGAAAATCGAGGGA...AGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAACTATGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGCCTTTCACAGCAGTTTaGCTACCCTTGAGTCCCAAA +
Preference number: 3 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKPFTAV*LPLSPK
Trigger: TTTGGGACTCAAGGGTAGCAAAACTGCTGTGAAAGG...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp GCAGCCACCCCTACTCTTACCTGCAAAGCATCCACATaGTGGGTTTCCTTCTGTTTGGGACATAGAGAAGGC +
Preference number: 3 (lower is better)
Translates to: AATPTLTCKAST*WVSFCLGHREG
Trigger: GCCTTCTCTATGTCCCAAACAGAAGGAAACCCATCATGTGGATGCTTTGCAGGTAAGAGTAGGGGTGGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp TTTCATCTCTGGAGATCTAAAGGAACAAATCCCCCGTaGGACACACCCACAGGAAGCCAGTGGTGGAGACTC +
Preference number: 3 (lower is better)
Translates to: FHLWRSKGTNPP*DTPTGSQWWRL
Trigger: GAGTCTCCACCACTGGCTTCCTGTGGGTGTGTCTCACGGGGGATTTGTTCCTTTAGATCTCCAGAGATGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp GCTTGCCAGAGAGACGCAAAGACAGGCAGATACAAATaGAGGCAGATTCTTGAGTTCAAGGTCAGCCTGGGT +
Preference number: 3 (lower is better)
Translates to: ACQRDAKTGRYK*RQILEFKVSLG
Trigger: ACCCAGGCTGACCTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTGGCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp GGTCAGAGCAAATTTAGGTCCAAGAGTGGTGGGAGATaGTACTCTCAGGACAAGGTCCCACCCAGCTATGTT +
Preference number: 3 (lower is better)
Translates to: GQSKFRSKSGGR*YSQDKVPPSYV
Trigger: AACATAGCTGGGTGGGACCTTGTCCTGAGAGTACCATCTCCCACCACTCTTGGACCTAAATTTGCTCTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp ATGTCGACTTTCCTAGTAGCTCCAGTCCAGTTGAAATCAGAATGGGCAAGGCTGACCTGTGCAGAGCTCTaGTGGGTTAGTGAAGCTGCA +
Preference number: 3 (lower is better)
Translates to: MSTFLVAPVQLKSEWARLTCAEL*WVSEAA
Trigger: TGCAGCTTCACTAACCCACAAGAGCTCTGCACAGGT...CAGCCTTGCCCATTCTGATTTCAACTGGACTGGAGCTACTAGGAAAGTCGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGCGATTTTCACTTGACTaGGTGTTTGGGCTACCGTTA +
Preference number: 3 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKRFSLD*VFGLPL
Trigger: TAACGGTAGCCCAAACACCAAGTCAAGTGAAAATCG...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp CTGCCTGCGCCTGGGAGTGTTCACAGGCTCATTCCCTaGAGCAGAGCATGGACAGGCTATTTTTATACTTTT +
Preference number: 3 (lower is better)
Translates to: LPAPGSVHRLIP*SRAWTGYFYTF
Trigger: AAAAGTATAAAAATAGCCTGTCCATGCTCTGCTTCAGGGAATGAGCCTGTGAACACTCCCAGGCGCAGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CCA 72 bp TCCTTAAGGCGCATTAAGGTTGCCATAGAAACTTCCTaGAACTGGCACCCAACTACACTAGCAGCAGAGGCT +
Preference number: 3 (lower is better)
Translates to: SLRRIKVAIETS*NWHPTTLAAEA
Trigger: AGCCTCTGCTGCTAGTGTAGTTGGGTGCCAGTTCCAGGAAGTTTCTATGGCAACCTTAATGCGCCTTAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp TGCTGCCTCTGTAAGATCCAACTCAGACTCTCAGGTTaGGCTCTTAAGGTTGTTTGCCCTCCTGTACTCCAT +
Preference number: 3 (lower is better)
Translates to: CCLCKIQLRLSG*ALKVVCPPVLH
Trigger: ATGGAGTACAGGAGGGCAAACAACCTTAAGAGCCCAACCTGAGAGTCTGAGTTGGATCTTACAGAGGCAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp GACCAGAAGCAGCTGAGGGCATACACCTGTGTGAAGTaGACGAAACCGGACGAAACAGACTTTGTTGACTTA +
Preference number: 3 (lower is better)
Translates to: DQKQLRAYTCVK*TKPDETDFVDL
Trigger: TAAGTCAACAAAGTCTGTTTCGTCCGGTTTCGTTCACTTCACACAGGTGTATGCCCTCAGCTGCTTCTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp GTAAGAATGACCCGAGGATGGAACACCTATTCAGCTTaGACAGAATTGAGACCAGAAGCAGCTGAGGGCATA +
Preference number: 3 (lower is better)
Translates to: VRMTRGWNTYSA*TELRPEAAEGI
Trigger: TATGCCCTCAGCTGCTTCTGGTCTCAATTCTGTGCAAGCTGAATAGGTGTTCCATCCTCGGGTCATTCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp TTGGGACATAGAGAAGGCTGGGTCCCAAGTTTTTCTTaGCCAAGATCTTTTTCAGTGGAGGACAGACTCAGC +
Preference number: 3 (lower is better)
Translates to: LGHREGWVPSFS*PRSFSVEDRLS
Trigger: GCTGAGTCTGTCCTCCACTGAAAAAGATCTTGGGCAAGAAAAACTTGGGACCCAGCCTTCTCTATGTCCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp TGGGCTGCAGAAACTCCAGTAAGAATGACCCGAGGATaGAACACCTATTCAGCTTGCACAGAATTGAGACCA +
Preference number: 3 (lower is better)
Translates to: WAAETPVRMTRG*NTYSACTELRP
Trigger: TGGTCTCAATTCTGTGCAAGCTGAATAGGTGTTCCATCCTCGGGTCATTCTTACTGGAGTTTCTGCAGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp ACAAATGCAGGCAGATTCTTGAGTTCAAGGTCAGCCTaGGTCAGAGCAAATTTAGGTCCAAGAGTGGTGGGA +
Preference number: 3 (lower is better)
Translates to: TNAGRFLSSRSA*VRANLGPRVVG
Trigger: TCCCACCACTCTTGGACCTAAATTTGCTCTGACCCAGGCTGACCTTGAACTCAAGAATCTGCCTGCATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp TTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTTAATCTATCCCTCGATTTTCACTaGACTTGGTGTTTGGGCTAC +
Preference number: 3 (lower is better)
Translates to: FSKTAGVGCCGCRSHFNLSLDFH*TWCLGY
Trigger: GTAGCCCAAACACCAAGTCAAGTGAAAATCGAGGGA...TAGATTAAAGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp CAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTTGAGTTCAAGTCAGCTTGCACAGAATaGAGACCAGAAGCAGCTGAG +
Preference number: 3 (lower is better)
Translates to: QRDAKTGRYKCRQILEFKSACTE*RPEAAE
Trigger: CTCAGCTGCTTCTGGTCTCAATTCTGTGCAAGCTGA...CTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp GGACCCACGATTAGACTTCAAGTTATTTGTTTGTACTaGTCCCAGACACCCCTTCTCTCAGAACCCAAACCA +
Preference number: 3 (lower is better)
Translates to: GPTIRLQVICLY*SQTPLLSEPKP
Trigger: TGGTTTGGGTTCTGAGAGAAGGGGTGTCTGGGAGCAGTACAAACAAATAACTTGAAGTCTAATCGTGGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR-3UTR CAA 90 bp ACAAGATCTCCATCTGAGCATATGTTCACAAACCTGACAGTGTTCCTTAAGGCGGCTGCTTTCCAGATGTaGAGAAGGAAATCGGAACCA +
Preference number: 3 (lower is better)
Translates to: TRSPSEHMFTNLTVFLKAAAFQM*RRKSEP
Trigger: TGGTTCCGATTTCCTTCTCAACATCTGGAAAGCAGC...CGCCTTAAGGAACACTGTCAGGTTTGTGAACATATGCTCAGATGGAGATCTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR GCA 72 bp CACCTAAGTAGTGGGCCTTCCTTCACTTTTCTAACATaGCTCTATCTGGTAATGCTGAACAATGCAAACGTG +
Preference number: 3 (lower is better)
Translates to: HLSSGPSFTFLT*LYLVMLNNANV
Trigger: CACGTTTGCATTGTTCAGCATTACCAGATAGAGGCATGTTAGAAAAGTGAAGGAAGGCCCACTACTTAGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CCA 72 bp ATTCCAGCTTGCTACACACTGTACCAGTCCTTTCCCTaGAAACAAGATCTCCATCTGAGCATATGTTCACAA +
Preference number: 3 (lower is better)
Translates to: IPACYTLYQSFP*KQDLHLSICSQ
Trigger: TTGTGAACATATGCTCAGATGGAGATCTTGTTTCCAGGGAAAGGACTGGTACAGTGTGTAGCAAGCTGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR TCA 72 bp AAACAAGATCTCCATCTGAGCATATGTTCACAAACCTaGCAGTGTTCCTTAAGGCGCATTAAGGTTGCCATA +
Preference number: 3 (lower is better)
Translates to: KQDLHLSICSQT*QCSLRRIKVAI
Trigger: TATGGCAACCTTAATGCGCCTTAAGGAACACTGTCAGGTTTGTGAACATATGCTCAGATGGAGATCTTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp AGCCTGGCCCACCCTGTTGGGCTCTGCTCCACGCTGGCTCCAAGCCAATGCCGGGACCATTCGCTCCACTaGCCAAGGTCAAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SLAHPVGLCSTLAPSQCRDHSLH*PRSSSS
Trigger: GGAGGAGCTTGACCTTGGCCAGTGGAGCGAATGGTC...CCGGCATTGGCTTGGAGCCAGCGTGGAGCAGAGCCCAACAGGGTGGGCCAGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp AGCCTGGCCCACCCTGTTGGGCTCTGCTCCACGCTGGCTCCAAGCCAATGCCGGACGCTTCGTTGTGGCTaGACTTGCTTCCCACACTGT +
Preference number: 4 (lower is better)
Translates to: SLAHPVGLCSTLAPSQCRTLRCG*TCFPHC
Trigger: ACAGTGTGGGAAGCAAGTCCAGCCACAACGAAGCGT...CCGGCATTGGCTTGGAGCCAGCGTGGAGCAGAGCCCAACAGGGTGGGCCAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 72 bp ACCCCACCCCAGGTGGATGGGACCCGCATGAGAAACTaGTGTGCTGATCTCGTGGTGCCCTGCCAGCTGCCA +
Preference number: 4 (lower is better)
Translates to: TPPQVDGTRMRN*CADLVVPCQLP
Trigger: TGGCAGCTGGCAGGGCACCACGAGATCAGCACACAAGTTTCTCATGCGGGTCCCATCCACCTGGGGTGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp TCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTGGCTCTGTGCGTCCCTaGCACCCAGGCAGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: SEPSFHPASVASEREWQSGSVRP*HPGSCG
Trigger: ACCACAGCTGCCTGGGTGTCAGGGACGCACAGAGCC...ACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp ACCCCACCCCAGGTGGATGGGACCCGCATGAGAAACTTGTGTGCTGATCTCGTGGTTCCAGAGGATTCCTaGCGGGGTGGTCCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: TPPQVDGTRMRNLCADLVVPEDS*RGGPGL
Trigger: GAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAAC...CACGAGATCAGCACACAAGTTTCTCATGCGGGTCCCATCCACCTGGGGTGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp ACCCCACCCCAGGTGGATGGGACCCGCATGAGAAACTTGTGTGCTGATCTCGTGTGTCACTGTGCCATTTaGCACCTCCAGCGCGCGGCA +
Preference number: 4 (lower is better)
Translates to: TPPQVDGTRMRNLCADLVCHCAI*HLQRAA
Trigger: TGCCGCGCGCTGGAGGTGGCAAATGGCACAGTGACA...CACGAGATCAGCACACAAGTTTCTCATGCGGGTCCCATCCACCTGGGGTGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCGAGCTTGGGCTCCTCTaGGGGAACATCCACCAGCAA +
Preference number: 4 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLELGLL*GNIHQQ
Trigger: TTGCTGGTGGATGTTCCCCCAGAGGAGCCCAAGCTC...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCGACCATTCGCTCCACTaGCCAAGGTCAAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLDHSLH*PRSSSS
Trigger: GGAGGAGCTTGACCTTGGCCAGTGGAGCGAATGGTC...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGGGCTCTGTGCGTCCCTaGCACCCAGGCAGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKGSVRP*HPGSCG
Trigger: ACCACAGCTGCCTGGGTGTCAGGGACGCACAGAGCC...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGCTGCCGGGGTGGTCCTaGGCTCTATCCAAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKLPGWS*ALSKEC
Trigger: GCACTCCTTGGATAGAGCCCAGGACCACCCCGGCAG...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 72 bp TGGAACAGGGCCAGCAGGCGTGGGCCTCCACGAGAGTaGACGGCTGCTGTGGGAGTAAGGCTTGTTTGTATA +
Preference number: 4 (lower is better)
Translates to: WNRASRRGPPRE*TAAVGVRLVCI
Trigger: TATACAAACAAGCCTTACTCCCACAGCAGCCGTCAACTCTCGTGGAGGCCCACGCCTGCTGGCCCTGTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 72 bp GACACAGGGATCCTTGCTGGAGAGAGTGGTTCAGGGTaGGAGAGCACACGGCTGCAGAAAGGGGCATCAAGG +
Preference number: 4 (lower is better)
Translates to: DTGILAGESGSG*ESTRLQKGASR
Trigger: CCTTGATGCCCCTTTCTGCAGCCGTGTGCTCTCCAACCCTGAACCACTCTCTCCAGCAAGGATCCCTGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCCCATTCTCTGTTTTGTaGGCCAGAGTACACCCAGTG +
Preference number: 4 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLPFSVL*ARVHPV
Trigger: CACTGGGTGTACTCTGGCTCACAAAACAGAGAATGG...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp CGGGATGGCTCTCAGGATCCCATTCTCACCTCCATAGTCCAGTACACACCTAAGTGTCACTGTGCCATTTaGCACCTCCAGCGCGCGGCA +
Preference number: 4 (lower is better)
Translates to: RDGSQDPILTSIVQYTPKCHCAI*HLQRAA
Trigger: TGCCGCGCGCTGGAGGTGGCAAATGGCACAGTGACA...CTTAGGTGTGTACTGGACTATGGAGGTGAGAATGGGATCCTGAGAGCCATCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGGGTGGTCCTGGGCTCTaGTATCCAAGGAGTGCCCGT +
Preference number: 4 (lower is better)
Translates to: QGKASEATQSNVKQGRPRGGPGL*YPRSAR
Trigger: ACGGGCACTCCTTGGATAGCAGAGCCCAGGACCACC...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS-3UTR CCA 90 bp GCAAGGAAGGCCAAGGTGGCAGTGAGGTGTAGCAGGAAGCAGACACCCTTCCTGCAACAGAGACCTGTGTaGGGTTCCAGAGGATTCCTG +
Preference number: 4 (lower is better)
Translates to: ARKAKVAVRCSRKQTPFLQQRPV*GSRGFL
Trigger: CAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTG...CAGGAAGGGTGTCTGCTTCCTGCTACACCTCACTGCCACCTTGGCCTTCCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp AATCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAACAGCTACCAGGAATGTaGGCAGGGACATGGACGAGG +
Preference number: 4 (lower is better)
Translates to: NRNQASTRPQWPRKENGKQLPGM*AGTWTR
Trigger: CCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTG...TTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp AGTGCTATGCCTTTGCCCGGGGGATCAGACTCCCAGTaGGCCGGCTGCCAGCCTCAGTTTAGCAAACCAAAT +
Preference number: 4 (lower is better)
Translates to: SAMPLPGGSDSQ*AGCQPQFSKPN
Trigger: ATTTGGTTTGCTAAACTGAGGCTGGCAGCCGGCCAACTGGGAGTCTGATCCCCCGGGCAAAGGCATAGCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp CAAGGCTGGGGTAAAGTAGTTCTCTCCGCCCTGGAAGAGGCACCCCCTACCATCCCATTCTCTGTTTTGTaGGCCAGAGTACACCCAGTG +
Preference number: 4 (lower is better)
Translates to: QGWGKVVLSALEEAPPTIPFSVL*ARVHPV
Trigger: CACTGGGTGTACTCTGGCTCACAAAACAGAGAATGG...GATGGTAGGGGGTGCCTCTTCCAGGGCGGAGAGAACTACTTTACCCCAGCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp TTCAGAGCCTATGCAGCACCAGCTGCACCTACTCAGAACCTGTGCAGAGCTCTTGCAGGCTTGTCACTGTaGCATTTGCCACCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: FRAYAAPAAPTQNLCRALAGLSL*HLPPPA
Trigger: CGCTGGAGGTGGCAAATGGCACAGTGACAAGCCTGC...AAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp TTCAGAGCCTATGCAGCACCAGCTGCACCTACTCAGAACCTGTGCAGAGCTCTTTCCCAGGTCTCAGGGTaGTGCCAGCTGACTTTGAGC +
Preference number: 4 (lower is better)
Translates to: FRAYAAPAAPTQNLCRALSQVSG*CQLTLS
Trigger: GCTCAAAGTCAGCTGGCAGCACCCTGAGACCTGGGA...AAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp AAGCATCAAAGTCTCACGGCAAGTCCAGAGGTGAAAGGGAAGCCCCTGGTTCAGGTCATAAGGGCTCTGTaGGTCCCTGACACCCAGGCA +
Preference number: 4 (lower is better)
Translates to: KHQSLTASPEVKGKPLVQVIRAL*VPDTQA
Trigger: TGCCTGGGTGTCAGGGACGCACAGAGCCCTTATGAC...CTGAACCAGGGGCTTCCCTTTCACCTCTGGACTTGCCGTGAGACTTTGATGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp TGTAGCAGGAAGCAGACACCCTTCCTGCCTGCGCCTGGGAGTGTTCACAGGCTCACTGATCCTCGTGGTTaGCAGAGTCTTCAACAGAGA +
Preference number: 4 (lower is better)
Translates to: CSRKQTPFLPAPGSVHRLTDPRG*QSLQQR
Trigger: TCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGT...GAGCCTGTGAACACTCCCAGGCGCAGGCAGGAAGGGTGTCTGCTTCCTGCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp GGGACCAGAGCTCATACTAAGGAAACAGCACCTGCCTaGGGGTGGAGAAGAACAGCTGTGCTTCGGGAACAG +
Preference number: 4 (lower is better)
Translates to: GTRAHTKETAPA*GWRRTAVLREQ
Trigger: CTGTTCCCGAAGCACAGCTGTTCTTCTCCACCCCAAGGCAGGTGCTGTTTCCTTAGTATGAGCTCTGGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp GTGGAGCTGACGGGCATCTCTATTCAGTCATCACAAGCTGTCTTCACAATGGCCGAGCTTGGGCTCCTCTaGGGGAACATCCACCAGCAA +
Preference number: 4 (lower is better)
Translates to: VELTGISIQSSQAVFTMAELGLL*GNIHQQ
Trigger: TTGCTGGTGGATGTTCCCCCAGAGGAGCCCAAGCTC...GGCCATTGTGAAGACAGCTTGTGATGACTGAATAGAGATGCCCGTCAGCTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp TTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTTAATCTAGGATTCCTGCCGGGGTaGTCCTGGGCTCTGCTATCC +
Preference number: 4 (lower is better)
Translates to: FSKTAGVGCCGCRSHFNLGFLPG*SWALLS
Trigger: GGATAGCAGAGCCCAGGACCACCCCGGCAGGAATCC...TAGATTAAAGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS-3UTR CCA 90 bp GCAAGGAAGGCCAAGGTGGCAGTGAGGTGTAGCAGGAAGCAGACACCCTTCCTGACTGATCCTCGTGGTTaGCAGAGTCTTCAACAGAGA +
Preference number: 4 (lower is better)
Translates to: ARKAKVAVRCSRKQTPFLTDPRG*QSLQQR
Trigger: TCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGT...CAGGAAGGGTGTCTGCTTCCTGCTACACCTCACTGCCACCTTGGCCTTCCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp GTTTTCCAGAAGCTATTCAGAGAAGGTTGTCTGAAGAGCGCGCACGGCTCTTTGGCCCAAGGAATACGGTaGGGGTGGAGGAGAGGTCGT +
Preference number: 4 (lower is better)
Translates to: VFQKLFREGCLKSAHGSLAQGIR*GWRRGR
Trigger: ACGACCTCTCCTCCACCCCCACCGTATTCCTTGGGC...CAAAGAGCCGTGCGCGCTCTTCAGACAACCTTCTCTGAATAGCTTCTGGAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 72 bp CTTTGCACACTTCTTGCCACCAGCTGTGGCATGGCCTaGATAGAGACAAAACGACATGGTTCCTGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: LCTLLATSCGMA*IETKRHGSCPW
Trigger: CCAGGGGCAGGAACCATGTCGTTTTGTCTCTATCAAGGCCATGCCACAGCTGGTGGCAAGAAGTGTGCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGAATGGTAACATTGCCTaGTGCTTCCTTCCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: QGKASEATQSNVKQGRPRNGNIA*CFLPGA
Trigger: TGCCCCGGGAAGGAAGCAGCAGGCAATGTTACCATT...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp TTCAGAGCCTATGCAGCACCAGCTGCACCTACTCAGAACCTGTGCAGAGCTCTTACGCTTCGTTGTGGCTaGACTTGCTTCCCACACTGT +
Preference number: 4 (lower is better)
Translates to: FRAYAAPAAPTQNLCRALTLRCG*TCFPHC
Trigger: ACAGTGTGGGAAGCAAGTCCAGCCACAACGAAGCGT...AAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp GTGGAGCTGACGGGCATCTCTATTCAGTCATCACAAGCTGTCTTCACAATGGCCCTGATACCACAAGGTTaGCAGGTGGATCCGGCTGCA +
Preference number: 4 (lower is better)
Translates to: VELTGISIQSSQAVFTMALIPQG*QVDPAA
Trigger: TGCAGCCGGATCCACCTGCCAACCTTGTGGTATCAG...GGCCATTGTGAAGACAGCTTGTGATGACTGAATAGAGATGCCCGTCAGCTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGCAACAGAGACCTGTGTaGGGTTCCAGAGGATTCCTG +
Preference number: 4 (lower is better)
Translates to: QGKASEATQSNVKQGRPRQQRPV*GSRGFL
Trigger: CAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTG...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp AATCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAACACCCAGGCAGCTGTaGTTTACGGTATTGTCAGAC +
Preference number: 4 (lower is better)
Translates to: NRNQASTRPQWPRKENGKTPRQL*FTVLSD
Trigger: GTCTGACAATACCGTAAACCACAGCTGCCTGGGTGT...TTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGCCAGAGTACACCCAGTaGATGGTAACATTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: QGKASEATQSNVKQGRPRPEYTQ*MVTLPA
Trigger: AGCAGGCAATGTTACCATTCACTGGGTGTACTCTGG...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp GCAAGGAAGGCCAAGGTGGCAGTGAGGTGTAGCAGGAAGCAGACACCCTTCCTGGTTTGCAACGCACAGTaGCACTATGTGGTATACTTT +
Preference number: 4 (lower is better)
Translates to: ARKAKVAVRCSRKQTPFLVCNAQ*HYVVYF
Trigger: AAAGTATACCACATAGTGTCACTGTGCGTTGCAAAC...CAGGAAGGGTGTCTGCTTCCTGCTACACCTCACTGCCACCTTGGCCTTCCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp GTGGAGCTGACGGGCATCTCTATTCAGTCATCACAAGCTGTCTTCACAATGGCCGAGGAGAGGTCGTCTTaGTTTCCTTCTCAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: VELTGISIQSSQAVFTMAEERSS*FPSQPL
Trigger: CAGAGGCTGAGAAGGAAAGCAAGACGACCTCTCCTC...GGCCATTGTGAAGACAGCTTGTGATGACTGAATAGAGATGCCCGTCAGCTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGACACCCAGGCAGCTGTaGTTTACGGTATTGTCAGAC +
Preference number: 4 (lower is better)
Translates to: QGKASEATQSNVKQGRPRTPRQL*FTVLSD
Trigger: GTCTGACAATACCGTAAACCACAGCTGCCTGGGTGT...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp CAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTTGAGTTCAAGGGATTCCTGCCGGGGTaGTCCTGGGCTCTATCCAAG +
Preference number: 4 (lower is better)
Translates to: QRDAKTGRYKCRQILEFKGFLPG*SWALSK
Trigger: CTTGGATAGAGCCCAGGACCACCCCGGCAGGAATCC...CTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp TTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTTAATCTACCTTCCAGGTATGGCTaGTACCACAAGGTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: FSKTAGVGCCGCRSHFNLPSRYG*YHKVGR
Trigger: CCTGCCAACCTTGTGGTATCAGCCATACCTGGAAGG...TAGATTAAAGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp AAGCATCAAAGTCTCACGGCAAGTCCAGAGGTGAAAGGGAAGCCCCTGGTTCAGTTCCTTCTCAGCCTCTaGCTTCCATTTCTGCTTGAG +
Preference number: 4 (lower is better)
Translates to: KHQSLTASPEVKGKPLVQFLLSL*LPFLLE
Trigger: CTCAAGCAGAAATGGAAGTCAGAGGCTGAGAAGGAA...CTGAACCAGGGGCTTCCCTTTCACCTCTGGACTTGCCGTGAGACTTTGATGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp TCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTGGTGTTGATTTTCTTTaGAAACAGCACAGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: SEPSFHPASVASEREWQSGVDFL*KQHSLR
Trigger: ACGAAGGCTGTGCTGTTTGCAAAGAAAATCAACACC...ACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp CTCAGTTTAGCAAACCAAATGAGGACACAGGGATCCTaGCTGGAGAGAGTGGTTCAGGGTTGGAGAGCACAC +
Preference number: 4 (lower is better)
Translates to: LSLANQMRTQGS*LERVVQGWRAH
Trigger: GTGTGCTCTCCAACCCTGAACCACTCTCTCCAGCAAGGATCCCTGTGTCCTCATTTGGTTTGCTAAACTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp AATCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGGTGTTGATTTTCTTTaGAAACAGCACAGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: NRNQASTRPQWPRKENGKGVDFL*KQHSLR
Trigger: ACGAAGGCTGTGCTGTTTGCAAAGAAAATCAACACC...TTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp AATCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAATCTGACTTCCATTTCTaGTTGAGTCTCAGGATGATG +
Preference number: 4 (lower is better)
Translates to: NRNQASTRPQWPRKENGKSDFHF*LSLRMM
Trigger: CATCATCCTGAGACTCAAGCAGAAATGGAAGTCAGA...TTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp GGCATCTCTATTCAGTCATCACAAGCTGTCTTCACAATGGCCTGTGTTCCTCACGAGGAGAGGTCGTCTTaGTTTCCTTCTCAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: GISIQSSQAVFTMACVPHEERSS*FPSQPL
Trigger: CAGAGGCTGAGAAGGAAAGCAAGACGACCTCTCCTC...GTGAGGAACACAGGCCATTGTGAAGACAGCTTGTGATGACTGAATAGAGATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp CAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGCAGATTCTTGAGTTCAAGGCGGCCTTCCAGGTATaGCTGATACCACAAGGTTGG +
Preference number: 4 (lower is better)
Translates to: QRDAKTGRYKCRQILEFKAAFQV*LIPQGW
Trigger: CCAACCTTGTGGTATCAGCCATACCTGGAAGGCCGC...CTTGAACTCAAGAATCTGCCTGCATTTGTATCTGCCTGTCTTTGCGTCTCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp GCCTCTTCCAGACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGGCCCAAGGAATACGGTaGGGGTGGAGGAGAGGTCGT +
Preference number: 4 (lower is better)
Translates to: ASSRLLRETGNSSLKTKMAQGIR*GWRRGR
Trigger: ACGACCTCTCCTCCACCCCCACCGTATTCCTTGGGC...CATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGTCTGGAAGAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp GCCTCTTCCAGACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGTCCCAGGTCTCAGGGTaGTGCCAGCTGACTTTGAGC +
Preference number: 4 (lower is better)
Translates to: ASSRLLRETGNSSLKTKMSQVSG*CQLTLS
Trigger: GCTCAAAGTCAGCTGGCAGCACCCTGAGACCTGGGA...CATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGTCTGGAAGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp CAGCTTGGACCCACGATTAGACTTCAAGTTATTTGTTaGTACTGCTCCCAGACACCCCTTCTCTCAGAACCC +
Preference number: 4 (lower is better)
Translates to: QLGPTIRLQVIC*YCSQTPLLSEP
Trigger: GGGTTCTGAGAGAAGGGGTGTCTGGGAGCAGTACAAACAAATAACTTGAAGTCTAATCGTGGGTCCAAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCGCAGGCTTGTCACTGTaGCATTTGCCACCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: TLERNRQQFSKNQNESAFAGLSL*HLPPPA
Trigger: CGCTGGAGGTGGCAAATGGCACAGTGACAAGCCTGC...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCGTCATAAGGGCTCTGTaGGTCCCTGACACCCAGGCA +
Preference number: 4 (lower is better)
Translates to: TLERNRQQFSKNQNESAFVIRAL*VPDTQA
Trigger: TGCCTGGGTGTCAGGGACGCACAGAGCCCTTATGAC...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCCAGCTACCAGGAATGTaGGCAGGGACATGGACGAGG +
Preference number: 4 (lower is better)
Translates to: TLERNRQQFSKNQNESAFQLPGM*AGTWTR
Trigger: CCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTG...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp TTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCTTGCCCTTCCAGGTATGGCTaGTACCACAAGGTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: LRETGNSSLKTKMKVHSCPSRYG*YHKVGR
Trigger: CCTGCCAACCTTGTGGTATCAGCCATACCTGGAAGG...GCAAGAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp GCCTCTTCCAGACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGTTCCTTCTCAGCCTCTaGCTTCCATTTCTGCTTGAG +
Preference number: 4 (lower is better)
Translates to: ASSRLLRETGNSSLKTKMFLLSL*LPFLLE
Trigger: CTCAAGCAGAAATGGAAGTCAGAGGCTGAGAAGGAA...CATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGTCTGGAAGAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCGCGGCCTTCCAGGTATaGCTGATACCACAAGGTTGG +
Preference number: 4 (lower is better)
Translates to: TLERNRQQFSKNQNESAFAAFQV*LIPQGW
Trigger: CCAACCTTGTGGTATCAGCCATACCTGGAAGGCCGC...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp GCATTGAGGTATCCTGTTTTTAACGGATATGATCTCTaGCCAAAGTCTCTCTGTCCATTCCAGCTTGCTACA +
Preference number: 4 (lower is better)
Translates to: ALRYPVFNGYDL*PKSLCPFQLAT
Trigger: TGTAGCAAGCTGGAATGGACAGAGAGACTTTGGCAAGAGATCATATCCGTTAAAAACAGGATACCTCAATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 72 bp CATGAGCCTCTGATTTCCTTCCAGAAATCCCAGGCCTaGGTTTGGGGAGAATGTTTACTAACTAAAACCTTT +
Preference number: 4 (lower is better)
Translates to: HEPLISFQKSQA*VWGECLLTKTF
Trigger: AAAGGTTTTAGTTAGTAAACATTCTCCCCAAACCAAGGCCTGGGATTTCTGGAAGGAAATCAGAGGCTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR TCA 90 bp TTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCTTGCCCAGAGTACACCCAGTaGATGGTAACATTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LRETGNSSLKTKMKVHSCPEYTQ*MVTLPA
Trigger: AGCAGGCAATGTTACCATTCACTGGGTGTACTCTGG...GCAAGAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp GCCTCTTCCAGACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGTCTGACTTCCATTTCTaGTTGAGTCTCAGGATGATG +
Preference number: 4 (lower is better)
Translates to: ASSRLLRETGNSSLKTKMSDFHF*LSLRMM
Trigger: CATCATCCTGAGACTCAAGCAGAAATGGAAGTCAGA...CATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGTCTGGAAGAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp CTTTTACAATGTTTTCCAGAAGCTATTCAGAGAAGGTaGTCTGAAGAGCGCGCACGGCTCTTTGAGATTTTT +
Preference number: 4 (lower is better)
Translates to: LLQCFPEAIQRR*SEERARLFEIF
Trigger: AAAAATCTCAAAGAGCCGTGCGCGCTCTTCAGACAACCTTCTCTGAATAGCTTCTGGAAAACATTGTAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp ACAGTCGCCGATCCCCTGAAGATCACGATCTGTAACATTTTTAATAAATTTCCCATAAGTAGTCTCTGTTaGTGTTGTCATAAGGGCTCT +
Preference number: 4 (lower is better)
Translates to: TVADPLKITICNIFNKFPISSLC*CCHKGS
Trigger: AGAGCCCTTATGACAACAGCAACAGAGACTACTTAT...GGGAAATTTATTAAAAATGTTACAGATCGTGATCTTCAGGGGATCGGCGACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
3UTR CAA 72 bp TTAATAAATTTCCCTTTCACAGCAGTTTTGCTACCCTaGAGTCCCAAAAACTTAGCAAAGGAGGAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LINFPFTAVLLP*SPKNLAKEERR
Trigger: CCTTCTTTCCTCCTTTGCTAAGTTTTTGGGACTCAAGGGTAGCAAAACTGCTGTGAAAGGGAAATTTATTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR GCA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCATAAGTAGTCTCTGTTaGTGTTGTCATAAGGGCTCT +
Preference number: 4 (lower is better)
Translates to: TLERNRQQFSKNQNESAFISSLC*CCHKGS
Trigger: AGAGCCCTTATGACAACAGCAACAGAGACTACTTAT...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
3UTR CAA 72 bp GTAACATTTTTAATAAATTTCCCTTTCACAGCAGTTTaGCTACCCTTGAGTCCCAAAAACTTAGCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: VTFLINFPFTAV*LPLSPKNLAKE
Trigger: CTCCTTTGCTAAGTTTTTGGGACTCAAGGGTAGCAAAACTGCTGTGAAAGGGAAATTTATTAAAAATGTTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS GCA 90 bp AATCAGGGTAACGGTGGCCCCTGGCAGGCTTGTCACTGTGCCATTTaGCACCTCCAGCGCGCGGCAGCTCCCGAGGACCAGCGCGACCGC +
Preference number: 5 (lower is better)
Translates to: NQGNGGPWQACHCAI*HLQRAAAPEDQRDR
Trigger: GCGGTCGCGCTGGTCCTCGGGAGCTGCCGCGCGCTGGAGGTGGCAAATGGCACAGTGACAAGCCTGCCAGGGGCCACCGTTACCCTGATT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 90 bp GCTATCCAAGGAGTGCCCGTGACCTCTGGGGACCATTCGCTCCACTaGCCAAGGTCAAGCTCCTCCTTCCCACGGACCTGGACCACGTGC +
Preference number: 5 (lower is better)
Translates to: AIQGVPVTSGDHSLH*PRSSSSFPRTWTTC
Trigger: GCACGTGGTCCAGGTCCGTGGGAAGGAGGAGCTTGACCTTGGCCAGTGGAGCGAATGGTCCCCAGAGGTCACGGGCACTCCTTGGATAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS CCA 90 bp TCTATCCAAGGAGTGCCCGTGACCTCTGGGGACCATTCGCTCCACTaGCCAAGGTCAAGCTCCTCCTTCCCACGGACCTGGACCACGTGC +
Preference number: 5 (lower is better)
Translates to: SIQGVPVTSGDHSLH*PRSSSSFPRTWTTC
Trigger: GCACGTGGTCCAGGTCCGTGGGAAGGAGGAGCTTGACCTTGGCCAGTGGAGCGAATGGTCCCCAGAGGTCACGGGCACTCCTTGGATAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS GCA 90 bp GGCAGAGTCTTCAACAGAGACCTGTGTGGGGTTCCAGAGGATTCCTaGCGGGGTGGTCCTGGGCTCTGCTATCCAAGGAGTGCCCGTGAC +
Preference number: 5 (lower is better)
Translates to: GRVFNRDLCGVPEDS*RGGPGLCYPRSARD
Trigger: GTCACGGGCACTCCTTGGATAGCAGAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTGAAGACTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS GCA 90 bp GGCAGAGTCTTCAACAGAGACCTGTGTGGGGTTCCAGAGGATTCCTaGCGGGGTGGTCCTGGGCTCTATCCAAGGAGTGCCCGTGACCTC +
Preference number: 5 (lower is better)
Translates to: GRVFNRDLCGVPEDS*RGGPGLYPRSARDL
Trigger: GAGGTCACGGGCACTCCTTGGATAGAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTGAAGACTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS TCA 90 bp GGCAGCTGTGGTTTACGGTATTGTCAGACCCAGAGCTGTGTGGGGTaGGGAGAGGAACCAGAAGGAAGGTCGGCTTCAGTGGGCCCAAGG +
Preference number: 5 (lower is better)
Translates to: GSCGLRYCQTQSCVG*GEEPEGRSASVGPR
Trigger: CCTTGGGCCCACTGAAGCCGACCTTCCTTCTGGTTCCTCTCCTCACCCCACACAGCTCTGGGTCTGACAATACCGTAAACCACAGCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 90 bp CGTACTGATCCTCGTGGTTGGCAGAGTCTTCAACAGAGACCTGTGTaGGGTTCCAGAGGATTCCTGCCGGGGTGGTCCTGGGCTCTGCTA +
Preference number: 5 (lower is better)
Translates to: RTDPRGWQSLQQRPV*GSRGFLPGWSWALL
Trigger: TAGCAGAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGTACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS CCA 90 bp CGTACTGATCCTCGTGGTTGGCAGAGTCTTCAACAGAGACCTGTGTaGGGTTCCAGAGGATTCCTGCCGGGGTGGTCCTGGGCTCTATCC +
Preference number: 5 (lower is better)
Translates to: RTDPRGWQSLQQRPV*GSRGFLPGWSWALS
Trigger: GGATAGAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGTACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS CCA 90 bp CAAACGCCAAGCTTCCTCCAGCTACCAGGAATGTGGGCAGGGACATaGACGAGGATTCTTGCACTGGGGCGAGGACACTCGTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: QTPSFLQLPGMWAGT*TRILALGRGHSLLL
Trigger: CAGAAGCAACGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTGGAGGAAGCTTGGCGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS GCA 90 bp GGGCACCTGGAAGTCACTCTTCCCGTTGGTGGTGTTGATTTTCTTTaGAAACAGCACAGCCTTCGTGGTTGGAGAGGGGGTGCTGCTCGG +
Preference number: 5 (lower is better)
Translates to: GHLEVTLPVGGVDFL*KQHSLRGWRGGAAR
Trigger: CCGAGCAGCACCCCCTCTCCAACCACGAAGGCTGTGCTGTTTGCAAAGAAAATCAACACCACCAACGGGAAGAGTGACTTCCAGGTGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp CAGGGGAAAGCATCTGAGGCCACTCAGTCAAACGTAAAGCAAGGAAGGCCAAGGTGGCCCCTGGCAGGCTaGTCACTGTGCCATTTGCCA +
Preference number: 5 (lower is better)
Translates to: QGKASEATQSNVKQGRPRWPLAG*SLCHLP
Trigger: TGGCAAATGGCACAGTGACAAGCCTGCCAGGGGCCA...CCTTGGCCTTCCTTGCTTTACGTTTGACTGAGTGGCCTCAGATGCTTTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS GCA 90 bp CCTCCAGCTACCAGGAATGTGGGCAGGGACATGGACGAGGATTCTTaGACTGGGGCGAGGACACTCGTTGCTTCTGTAGAACTTTCGTAC +
Preference number: 5 (lower is better)
Translates to: PPATRNVGRDMDEDS*TGARTLVASVELSY
Trigger: GTACGAAAGTTCTACAGAAGCAACGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 90 bp GTTGGTGGTGTTGATTTTCTTTGCAAACAGCACAGCCTTCGTGGTTaGAGAGGGGGTGCTGCTCGGACGCCACTCACAGATGGCGTTGAC +
Preference number: 5 (lower is better)
Translates to: VGGVDFLCKQHSLRG*RGGAARTPLTDGVD
Trigger: GTCAACGCCATCTGTGAGTGGCGTCCGAGCAGCACCCCCTCTCCAACCACGAAGGCTGTGCTGTTTGCAAAGAAAATCAACACCACCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp TTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTTAATCTAGCACAGCCTTCGTGGTaGGAGAGGGGGTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: FSKTAGVGCCGCRSHFNLAQPSW*ERGCCS
Trigger: CGAGCAGCACCCCCTCTCCAACCACGAAGGCTGTGC...TAGATTAAAGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 90 bp TGCACTGGGGCGAGGACACTCGTTGCTTCTGTAGAACTTTCGTACTaGTCCTCGTGGTTGGCAGAGTCTTCAACAGAGACCTGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: CTGARTLVASVELSY*SSWLAESSTETCVG
Trigger: CCCCACACAGGTCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGTACGAAAGTTCTACAGAAGCAACGAGTGTCCTCGCCCCAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp CAAGGCTGGGGTAAAGTAGTTCTCTCCGCCCTGGAAGAGGCACCCCCTACCATCACTATGTGGTATACTTaGTCACCCTCCAGGATCTCC +
Preference number: 5 (lower is better)
Translates to: QGWGKVVLSALEEAPPTITMWYT*SPSRIS
Trigger: GGAGATCCTGGAGGGTGACAAAGTATACCACATAGT...GATGGTAGGGGGTGCCTCTTCCAGGGCGGAGAGAACTACTTTACCCCAGCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp CCATTCCAGCTTGCTACACACTGTACCAGTCCTTTCCCTGGAAACAAGATCTCCGCTGATACCACAAGGTaGGCAGGTGGATCCGGCTGC +
Preference number: 5 (lower is better)
Translates to: PFQLATHCTSPFPGNKISADTTR*AGGSGC
Trigger: GCAGCCGGATCCACCTGCCAACCTTGTGGTATCAGC...GGAGATCTTGTTTCCAGGGAAAGGACTGGTACAGTGTGTAGCAAGCTGGAATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS CCA 90 bp AGCTACCAGGAATGTGGGCAGGGACATGGACGAGGATTCTTGCACTaGGGCGAGGACACTCGTTGCTTCTGTAGAACTTTCGTACTGATC +
Preference number: 5 (lower is better)
Translates to: SYQECGQGHGRGFLH*GEDTRCFCRTFVLI
Trigger: GATCAGTACGAAAGTTCTACAGAAGCAACGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 90 bp CCTGTGGTAGTCCATTCTCTGTTTTGTGAGCCAGAGTACACCCAGTaGATGGTAACATTGCCTGCTGCTTCCTTCCCGGGGCAAATCAGG +
Preference number: 5 (lower is better)
Translates to: PVVVHSLFCEPEYTQ*MVTLPAASFPGQIR
Trigger: CCTGATTTGCCCCGGGAAGGAAGCAGCAGGCAATGTTACCATTCACTGGGTGTACTCTGGCTCACAAAACAGAGAATGGACTACCACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 90 bp ATAAGTAGTCTCTGTTGCTGTTGTCATAAGGGCTCTGTGCGTCCCTaGCACCCAGGCAGCTGTGGTTTACGGTATTGTCAGACCCAGAGC +
Preference number: 5 (lower is better)
Translates to: ISSLCCCCHKGSVRP*HPGSCGLRYCQTQS
Trigger: GCTCTGGGTCTGACAATACCGTAAACCACAGCTGCCTGGGTGTCAGGGACGCACAGAGCCCTTATGACAACAGCAACAGAGACTACTTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp AATCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAACTATGTGGTATACTTaGTCACCCTCCAGGATCTCC +
Preference number: 5 (lower is better)
Translates to: NRNQASTRPQWPRKENGKTMWYT*SPSRIS
Trigger: GGAGATCCTGGAGGGTGACAAAGTATACCACATAGT...TTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp TTCAGTAAGACGGCAGGTGTGGGGTGCTGTGGTTGCAGAAGTCACTTTAATCTACATGGACGAGGATTCTaGCACTGGGGCGAGGACACT +
Preference number: 5 (lower is better)
Translates to: FSKTAGVGCCGCRSHFNLHGRGF*HWGEDT
Trigger: AGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATG...TAGATTAAAGTGACTTCTGCAACCACAGCACCCCACACCTGCCGTCTTACTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp TCGGAACCAAGCTTCCACCCGGCCTCAGTGGCCTCGGAAAGAGAATGGCAAAGTGACTTCCATTTCTGCTaGAGTCTCAGGATGATGAAG +
Preference number: 5 (lower is better)
Translates to: SEPSFHPASVASEREWQSDFHFC*SLRMMK
Trigger: CTTCATCATCCTGAGACTCAAGCAGAAATGGAAGTC...ACTTTGCCATTCTCTTTCCGAGGCCACTGAGGCCGGGTGGAAGCTTGGTTCCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 90 bp TTCGTTGTGGCTGGACTTGCTTCCCACACTGTTTGCAACGCACAGTaGCACTATGTGGTATACTTTGTCACCCTCCAGGATCTCCACCTG +
Preference number: 5 (lower is better)
Translates to: FVVAGLASHTVCNAQ*HYVVYFVTLQDLHL
Trigger: CAGGTGGAGATCCTGGAGGGTGACAAAGTATACCACATAGTGTCACTGTGCGTTGCAAACAGTGTGGGAAGCAAGTCCAGCCACAACGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp TTCAGAGCCTATGCAGCACCAGCTGCACCTACTCAGAACCTGTGCAGAGCTCTTTTCCCGTTGGTGGTGTaGATTTTCTTTGCAAACAGC +
Preference number: 5 (lower is better)
Translates to: FRAYAAPAAPTQNLCRALFPLVV*IFFANS
Trigger: GCTGTTTGCAAAGAAAATCAACACCACCAACGGGAA...AAGAGCTCTGCACAGGTTCTGAGTAGGTGCAGCTGGTGCTGCATAGGCTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 90 bp CCTCAGAACCAGTGTGTTTCCTGTGGTAGTCCATTCTCTGTTTTGTaGGCCAGAGTACACCCAGTGAATGGTAACATTGCCTGCTGCTTC +
Preference number: 5 (lower is better)
Translates to: PQNQCVSCGSPFSVL*ARVHPVNGNIACCF
Trigger: GAAGCAGCAGGCAATGTTACCATTCACTGGGTGTACTCTGGCTCACAAAACAGAGAATGGACTACCACAGGAAACACACTGGTTCTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCGCACAGCCTTCGTGGTaGGAGAGGGGGTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: TLERNRQQFSKNQNESAFAQPSW*ERGCCS
Trigger: CGAGCAGCACCCCCTCTCCAACCACGAAGGCTGTGC...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp GTGGAGCTGACGGGCATCTCTATTCAGTCATCACAAGCTGTCTTCACAATGGCCGACTTCCATTTCTGCTaGAGTCTCAGGATGATGAAG +
Preference number: 5 (lower is better)
Translates to: VELTGISIQSSQAVFTMADFHFC*SLRMMK
Trigger: CTTCATCATCCTGAGACTCAAGCAGAAATGGAAGTC...GGCCATTGTGAAGACAGCTTGTGATGACTGAATAGAGATGCCCGTCAGCTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp TTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCTTGCTGGCCCCTGGCAGGCTaGTCACTGTGCCATTTGCCA +
Preference number: 5 (lower is better)
Translates to: LRETGNSSLKTKMKVHSCWPLAG*SLCHLP
Trigger: TGGCAAATGGCACAGTGACAAGCCTGCCAGGGGCCA...GCAAGAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCGCTGATACCACAAGGTaGGCAGGTGGATCCGGCTGC +
Preference number: 5 (lower is better)
Translates to: TLERNRQQFSKNQNESAFADTTR*AGGSGC
Trigger: GCAGCCGGATCCACCTGCCAACCTTGTGGTATCAGC...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS-3UTR CAA 90 bp ACTCTTGAGAGAAACAGGCAACAGTTCTCTAAAAACCAAAATGAAAGTGCATTCCATGGACGAGGATTCTaGCACTGGGGCGAGGACACT +
Preference number: 5 (lower is better)
Translates to: TLERNRQQFSKNQNESAFHGRGF*HWGEDT
Trigger: AGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATG...GAATGCACTTTCATTTTGGTTTTTAGAGAACTGTTGCCTGTTTCTCTCAAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS GCA 72 bp AACGGTGGCCCCTGGCAGGCTTGTCACTGTGCCATTTaGCACCTCCAGCGCGCGGCAGCTCCCGAGGACCAG +
Preference number: 6 (lower is better)
Translates to: NGGPWQACHCAI*HLQRAAAPEDQ
Trigger: CTGGTCCTCGGGAGCTGCCGCGCGCTGGAGGTGGCAAATGGCACAGTGACAAGCCTGCCAGGGGCCACCGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp CCGGGGTGGTCCTGGGCTCTATCCAAGGAGTGCCCGTaGCCTCTGGGGACCATTCGCTCCACTGGCCAAGGT +
Preference number: 6 (lower is better)
Translates to: PGWSWALSKECP*PLGTIRSTGQG
Trigger: ACCTTGGCCAGTGGAGCGAATGGTCCCCAGAGGTCACGGGCACTCCTTGGATAGAGCCCAGGACCACCCCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197679.5
CDS CCA 72 bp GGAGTGCCCGTGACCTCTGGGGACCATTCGCTCCACTaGCCAAGGTCAAGCTCCTCCTTCCCACGGACCTGG +
Preference number: 6 (lower is better)
Translates to: GVPVTSGDHSLH*PRSSSSFPRTW
Trigger: CCAGGTCCGTGGGAAGGAGGAGCTTGACCTTGGCCAGTGGAGCGAATGGTCCCCAGAGGTCACGGGCACTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp GGGTGGTCCTGGGCTCTGCTATCCAAGGAGTGCCCGTaGCCTCTGGGGACCATTCGCTCCACTGGCCAAGGT +
Preference number: 6 (lower is better)
Translates to: GWSWALLSKECP*PLGTIRSTGQG
Trigger: ACCTTGGCCAGTGGAGCGAATGGTCCCCAGAGGTCACGGGCACTCCTTGGATAGCAGAGCCCAGGACCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS GCA 72 bp GTTCCAGAGGATTCCTGCCGGGGTGGTCCTGGGCTCTaGTATCCAAGGAGTGCCCGTGACCTCTGGGGACCA +
Preference number: 6 (lower is better)
Translates to: VPEDSCRGGPGL*YPRSARDLWGP
Trigger: TGGTCCCCAGAGGTCACGGGCACTCCTTGGATAGCAGAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029559.7
CDS CAA 72 bp CTCGGGTCCCAGGTCTCAGGGTGCTGCCAGCTGACTTaGAGCCAGCGCGGCCTTCCAGGTATGGCTGATACC +
Preference number: 6 (lower is better)
Translates to: LGSQVSGCCQLT*SQRGLPGMADT
Trigger: GGTATCAGCCATACCTGGAAGGCCGCGCTGGCTCAAAGTCAGCTGGCAGCACCCTGAGACCTGGGACCCGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp GCTGACTTTGAGCCAGCGCGGCCTTCCAGGTATGGCTaGTACCACAAGGTTGGCAGGTGGATCCGGCTGCAC +
Preference number: 6 (lower is better)
Translates to: ADFEPARPSRYG*YHKVGRWIRLH
Trigger: GTGCAGCCGGATCCACCTGCCAACCTTGTGGTATCAGCCATACCTGGAAGGCCGCGCTGGCTCAAAGTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp TTCCTTCCCGGGGCAAATCAGGGTAACGGTGGCCCCTaGCAGGCTTGTCACTGTGCCATTTGCCACCTCCAG +
Preference number: 6 (lower is better)
Translates to: FLPGANQGNGGP*QACHCAICHLQ
Trigger: CTGGAGGTGGCAAATGGCACAGTGACAAGCCTGCCAGGGGCCACCGTTACCCTGATTTGCCCCGGGAAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp CCTCGTGGTTGGCAGAGTCTTCAACAGAGACCTGTGTaGGGTTCCAGAGGATTCCTGCCGGGGTGGTCCTGG +
Preference number: 6 (lower is better)
Translates to: PRGWQSLQQRPV*GSRGFLPGWSW
Trigger: CCAGGACCACCCCGGCAGGAATCCTCTGGAACCCCACACAGGTCTCTGTTGAAGACTCTGCCAACCACGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp GGTGAGGAGAGGAACCAGAAGGAAGGTCGGCTTCAGTaGGCCCAAGGAATACGGTGGGGGTGGAGGAGAGGT +
Preference number: 6 (lower is better)
Translates to: GEERNQKEGRLQ*AQGIRWGWRRG
Trigger: ACCTCTCCTCCACCCCCACCGTATTCCTTGGGCCCACTGAAGCCGACCTTCCTTCTGGTTCCTCTCCTCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 90 bp GGGCTCTGTGCGTCCCTGACACCCAGGCAGCTGTGGTTTACGGTATaGTCAGACCCAGAGCTGTGTGGGGTGAGGAGAGGAACCAGAAGG +
Preference number: 6 (lower is better)
Translates to: GLCASLTPRQLWFTV*SDPELCGVRRGTRR
Trigger: CCTTCTGGTTCCTCTCCTCACCCCACACAGCTCTGGGTCTGACAATACCGTAAACCACAGCTGCCTGGGTGTCAGGGACGCACAGAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp AGCTTCCTCCAGCTACCAGGAATGTGGGCAGGGACATaGACGAGGATTCTTGCACTGGGGCGAGGACACTCG +
Preference number: 6 (lower is better)
Translates to: SFLQLPGMWAGT*TRILALGRGHS
Trigger: CGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTGGAGGAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 72 bp GCGTCCCTGACACCCAGGCAGCTGTGGTTTACGGTATaGTCAGACCCAGAGCTGTGTGGGGTGAGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: ASLTPRQLWFTV*SDPELCGVRRG
Trigger: TCCTCTCCTCACCCCACACAGCTCTGGGTCTGACAATACCGTAAACCACAGCTGCCTGGGTGTCAGGGACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp CTGGGCCACCGGGAGCAGCAACACCGTGAACTCCTTTaGCCATACAGGTCGGTATCGAAGCTGGAACTGCAG +
Preference number: 6 (lower is better)
Translates to: LGHREQQHRELL*PYRSVSKLELQ
Trigger: CTGCAGTTCCAGCTTCGATACCGACCTGTATGGTCAAAGGAGTTCACGGTGTTGCTGCTCCCGGTGGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp TGCTTCACTCCTCGCAAGGCATCATGGATGACGCATTaGTACTGGGCCACCGGGAGCAGCAACACCGTGAAC +
Preference number: 6 (lower is better)
Translates to: CFTPRKASWMTH*YWATGSSNTVN
Trigger: GTTCACGGTGTTGCTGCTCCCGGTGGCCCAGTACCAATGCGTCATCCATGATGCCTTGCGAGGAGTGAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp ACTCCTCGCAAGGCATCATGGATGACGCATTGGTACTaGGCCACCGGGAGCAGCAACACCGTGAACTCCTTT +
Preference number: 6 (lower is better)
Translates to: TPRKASWMTHWY*ATGSSNTVNSF
Trigger: AAAGGAGTTCACGGTGTTGCTGCTCCCGGTGGCCCAGTACCAATGCGTCATCCATGATGCCTTGCGAGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 72 bp TACCAGGAATGTGGGCAGGGACATGGACGAGGATTCTaGCACTGGGGCGAGGACACTCGTTGCTTCTGTAGA +
Preference number: 6 (lower is better)
Translates to: YQECGQGHGRGF*HWGEDTRCFCR
Trigger: TCTACAGAAGCAACGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 90 bp TCCTCCAGCTACCAGGAATGTGGGCAGGGACATGGACGAGGATTCTaGCACTGGGGCGAGGACACTCGTTGCTTCTGTAGAACTTTCGTA +
Preference number: 6 (lower is better)
Translates to: SSSYQECGQGHGRGF*HWGEDTRCFCRTFV
Trigger: TACGAAAGTTCTACAGAAGCAACGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTGGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 90 bp TTCAGTGGGCCCAAGGAATACGGTGGGGGTGGAGGAGAGGTCGTCTaGCTTTCCTTCTCAGCCTCTGACTTCCATTTCTGCTTGAGTCTC +
Preference number: 6 (lower is better)
Translates to: FSGPKEYGGGGGEVV*LSFSASDFHFCLSL
Trigger: GAGACTCAAGCAGAAATGGAAGTCAGAGGCTGAGAAGGAAAGCAAGACGACCTCTCCTCCACCCCCACCGTATTCCTTGGGCCCACTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp CTCTGTTGCTGTTGTCATAAGGGCTCTGTGCGTCCCTaGCACCCAGGCAGCTGTGGTTTACGGTATTGTCAG +
Preference number: 6 (lower is better)
Translates to: LCCCCHKGSVRP*HPGSCGLRYCQ
Trigger: CTGACAATACCGTAAACCACAGCTGCCTGGGTGTCAGGGACGCACAGAGCCCTTATGACAACAGCAACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS GCA 72 bp CCAAGGAATACGGTGGGGGTGGAGGAGAGGTCGTCTTaGTTTCCTTCTCAGCCTCTGACTTCCATTTCTGCT +
Preference number: 6 (lower is better)
Translates to: PRNTVGVEERSS*FPSQPLTSISA
Trigger: AGCAGAAATGGAAGTCAGAGGCTGAGAAGGAAAGCAAGACGACCTCTCCTCCACCCCCACCGTATTCCTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp GTTGATTTTCTTTGCAAACAGCACAGCCTTCGTGGTTaGAGAGGGGGTGCTGCTCGGACGCCACTCACAGAT +
Preference number: 6 (lower is better)
Translates to: VDFLCKQHSLRG*RGGAARTPLTD
Trigger: ATCTGTGAGTGGCGTCCGAGCAGCACCCCCTCTCCAACCACGAAGGCTGTGCTGTTTGCAAAGAAAATCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp GAATGTGGGCAGGGACATGGACGAGGATTCTTGCACTaGGGCGAGGACACTCGTTGCTTCTGTAGAACTTTC +
Preference number: 6 (lower is better)
Translates to: ECGQGHGRGFLH*GEDTRCFCRTF
Trigger: GAAAGTTCTACAGAAGCAACGAGTGTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp GTCCATTCTCTGTTTTGTGAGCCAGAGTACACCCAGTaGATGGTAACATTGCCTGCTGCTTCCTTCCCGGGG +
Preference number: 6 (lower is better)
Translates to: VHSLFCEPEYTQ*MVTLPAASFPG
Trigger: CCCCGGGAAGGAAGCAGCAGGCAATGTTACCATTCACTGGGTGTACTCTGGCTCACAAAACAGAGAATGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp GATCATTCAGGGAGCATAAATAGTCCCCAGTGTCGCTaGGCTGCACGTCCCTCAGAACCAGTGTGTTTCCTG +
Preference number: 6 (lower is better)
Translates to: DHSGSINSPQCR*AARPSEPVCFL
Trigger: CAGGAAACACACTGGTTCTGAGGGACGTGCAGCTCAGCGACACTGGGGACTATTTATGCTCCCTGAATGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp TTGGCAGGTGGATCCGGCTGCACCATTTTTAAGCTGTaGAACGCTTCGTTGTGGCTGGACTTGCTTCCCACA +
Preference number: 6 (lower is better)
Translates to: LAGGSGCTIFKL*NASLWLDLLPT
Trigger: TGTGGGAAGCAAGTCCAGCCACAACGAAGCGTTTCACAGCTTAAAAATGGTGCAGCCGGATCCACCTGCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 90 bp CTTCCCACACTGTTTGCAACGCACAGTGACACTATGTGGTATACTTaGTCACCCTCCAGGATCTCCACCTGGCAGGAGAAGCTTTTCAGC +
Preference number: 6 (lower is better)
Translates to: LPTLFATHSDTMWYT*SPSRISTWQEKLFS
Trigger: GCTGAAAAGCTTCTCCTGCCAGGTGGAGATCCTGGAGGGTGACAAAGTATACCACATAGTGTCACTGTGCGTTGCAAACAGTGTGGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp AGGGCACCTGGAAGTCACTCTTCCCGTTGGTGGTGTTaGTTTTCTTTGCAAACAGCACAGCCTTCGTGGTTG +
Preference number: 6 (lower is better)
Translates to: RAPGSHSSRWWC*FSLQTAQPSWL
Trigger: CAACCACGAAGGCTGTGCTGTTTGCAAAGAAAATCAACACCACCAACGGGAAGAGTGACTTCCAGGTGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp GCGAGGACACTCGTTGCTTCTGTAGAACTTTCGTACTaGTCCTCGTGGTTGGCAGAGTCTTCAACAGAGACC +
Preference number: 6 (lower is better)
Translates to: ARTLVASVELSY*SSWLAESSTET
Trigger: GGTCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGTACGAAAGTTCTACAGAAGCAACGAGTGTCCTCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CCA 72 bp CTTCCCACACTGTTTGCAACGCACAGTGACACTATGTaGTATACTTTGTCACCCTCCAGGATCTCCACCTGG +
Preference number: 6 (lower is better)
Translates to: LPTLFATHSDTM*YTLSPSRISTW
Trigger: CCAGGTGGAGATCCTGGAGGGTGACAAAGTATACCACATAGTGTCACTGTGCGTTGCAAACAGTGTGGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 72 bp CAGGGCACCTGGAAGTCACTCTTCCCGTTGGTGGTGTaGATTTTCTTTGCAAACAGCACAGCCTTCGTGGTT +
Preference number: 6 (lower is better)
Translates to: QGTWKSLFPLVV*IFFANSTAFVV
Trigger: AACCACGAAGGCTGTGCTGTTTGCAAAGAAAATCAACACCACCAACGGGAAGAGTGACTTCCAGGTGCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 72 bp CTGTTTGCAACGCACAGTGACACTATGTGGTATACTTaGTCACCCTCCAGGATCTCCACCTGGCAGGAGAAG +
Preference number: 6 (lower is better)
Translates to: LFATHSDTMWYT*SPSRISTWQEK
Trigger: CTTCTCCTGCCAGGTGGAGATCCTGGAGGGTGACAAAGTATACCACATAGTGTCACTGTGCGTTGCAAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS CAA 90 bp AGCTGTGAAACGCTTCGTTGTGGCTGGACTTGCTTCCCACACTGTTaGCAACGCACAGTGACACTATGTGGTATACTTTGTCACCCTCCA +
Preference number: 6 (lower is better)
Translates to: SCETLRCGWTCFPHC*QRTVTLCGILCHPP
Trigger: TGGAGGGTGACAAAGTATACCACATAGTGTCACTGTGCGTTGCAAACAGTGTGGGAAGCAAGTCCAGCCACAACGAAGCGTTTCACAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp GCTGGACTTGCTTCCCACACTGTTTGCAACGCACAGTaGCACTATGTGGTATACTTTGTCACCCTCCAGGAT +
Preference number: 6 (lower is better)
Translates to: AGLASHTVCNAQ*HYVVYFVTLQD
Trigger: ATCCTGGAGGGTGACAAAGTATACCACATAGTGTCACTGTGCGTTGCAAACAGTGTGGGAAGCAAGTCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5
CDS TCA 72 bp CAGTGTGTTTCCTGTGGTAGTCCATTCTCTGTTTTGTaGGCCAGAGTACACCCAGTGAATGGTAACATTGCC +
Preference number: 6 (lower is better)
Translates to: QCVSCGSPFSVL*ARVHPVNGNIA
Trigger: GGCAATGTTACCATTCACTGGGTGTACTCTGGCTCACAAAACAGAGAATGGACTACCACAGGAAACACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029559.7
ENSMUST00000197679.5