Pregenerated sensors for IL6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025746Ensembl transcript IDs: ENSMUST00000026845.12, ENSMUST00000195978.5, ENSMUST00000199183.5, ENSMUST00000199765.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTTGTGGCGTGTTCTGGGCTGTGGGAAGAAGTTCTAATTTAGAATaGATGAGACGAGCTAAGTCCATCTGCTTTGACTCACCCAAGCCA | + |
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Preference number: 1 (lower is better) Translates to: SCGVFWAVGRSSNLE*MRRAKSICFDSPKP Trigger: TGGCTTGGGTGAGTCAAAGCAGATGGACTTAGCTCGTCTCATTCATTCTAAATTAGAACTTCTTCCCACAGCCCAGAACACGCCACAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR TCA 90 bp | TGTGGTAGCATGAAGAAGTCTGGAAACACCCTTCCATGGGCCCACTGGCATGGGCAAGTGATTTCAAGATaGATTGGATGGTCTTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: CGSMKKSGNTLPWAHWHGQVISR*IGWSWS Trigger: GGACCAAGACCATCCAATTCATCTTGAAATCACTTG...CCCATGCCAGTGGGCCCATGGAAGGGTGTTTCCAGACTTCTTCATGCTACCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR TCA 90 bp | ATCAGTAAAGGTGGCACAGAGGAATCTAAAACAAATGTGTTCCTTCGTGGTTTCGTAGCCAGAAGCCCTTaGTCCCTTCCTTCCCTGACA | + |
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Preference number: 2 (lower is better) Translates to: ISKGGTEESKTNVFLRGFVARSP*SLPSLT Trigger: TGTCAGGGAAGGAAGGGATCAAGGGCTTCTGGCTAC...GAAACCACGAAGGAACACATTTGTTTTAGATTCCTCTGTGCCACCTTTACTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR CAA 90 bp | TCCTCCATATCTACCATTCTTCTGGCTAATGGTAGCCAGAAGCCCTaGATCCCTTCCTTCCCTGACATTTTAGCTTTTGGCTACTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: SSISTILLANGSQKP*IPSFPDILAFGYFS Trigger: AGAGAAGTAGCCAAAAGCTAAAATGTCAGGGAAGGAAGGGATCAAGGGCTTCTGGCTACCATTAGCCAGAAGAATGGTAGATATGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR CCA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACATGGGCCCACTGGCATaGGGAAGACTAACTGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: IFSDHSEECPQTDMLRHNMGPLA*GRLTGR Trigger: CCTTCCAGTTAGTCTTCCCCATGCCAGTGGGCCCAT...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR TCA 90 bp | TGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTTGCCGAGTAGATCTCAAGTGATTTCAAGATaGATTGGATGGTCTTGGTCC | + |
|
Preference number: 2 (lower is better) Translates to: CPQTDMLRHNALGLPSRSQVISR*IGWSWS Trigger: GGACCAAGACCATCCAATTCATCTTGAAATCACTTG...AGATCTACTCGGCAAACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| 3UTR-3UTR CCA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACGAACAAGACCCTAAGTaGTTCCTGTGCACATTAAAT | + |
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Preference number: 2 (lower is better) Translates to: IFSDHSEECPQTDMLRHNEQDPK*FLCTLN Trigger: ATTTAATGTGCACAGGAACCACTTAGGGTCTTGTTC...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR CCA 72 bp | GAAGTCTGGAAACACCCTTCCATGGGCCCACTGGCATaGGGAAGACTAACTGGAAGGCTTGCCCCACTACTT | + |
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Preference number: 3 (lower is better) Translates to: EVWKHPSMGPLA*GRLTGRLAPLL Trigger: AAGTAGTGGGGCAAGCCTTCCAGTTAGTCTTCCCCATGCCAGTGGGCCCATGGAAGGGTGTTTCCAGACTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR CAA 90 bp | ATCAGTAAAGGTGGCACAGAGGAATCTAAAACAAATGTGTTCCTTCGTGGTTTCGGTAGCCAGAAGCCCTaGATCCCTTCCTTCCCTGAC | + |
|
Preference number: 3 (lower is better) Translates to: ISKGGTEESKTNVFLRGFGSQKP*IPSFPD Trigger: GTCAGGGAAGGAAGGGATCAAGGGCTTCTGGCTACC...GAAACCACGAAGGAACACATTTGTTTTAGATTCCTCTGTGCCACCTTTACTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR CAA 90 bp | AGCCAGAAGCCCTTGATCCCTTCCTTCCCTGACATTTTAGCTTTTGGCTACTTCGTCCCAACATTCATATaGTCAGTTCTTCGTAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: SQKPLIPSFPDILAFGYFVPTFI*SVLRRE Trigger: TTCTCTACGAAGAACTGACAATATGAATGTTGGGAC...GAAGTAGCCAAAAGCTAAAATGTCAGGGAAGGAAGGGATCAAGGGCTTCTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR TCA 72 bp | GTGTTCTGGGCTGTGGGAAGAAGTTCTAATTTAGAATaGATGAGACGAGCTAAGTCCATCTGCTTTGACTCA | + |
|
Preference number: 3 (lower is better) Translates to: VFWAVGRSSNLE*MRRAKSICFDS Trigger: TGAGTCAAAGCAGATGGACTTAGCTCGTCTCATTCATTCTAAATTAGAACTTCTTCCCACAGCCCAGAACAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR-3UTR CAA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACTCTGTTAGGAGAGCATaGGAAATTGGGGTAGGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: IFSDHSEECPQTDMLRHNSVRRA*EIGVGR Trigger: CCTTCCTACCCCAATTTCCAATGCTCTCCTAACAGA...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR CCA 72 bp | GAACAAGACCCTAAGTGGTTCCTGTGCACATTAAATTaGGAAACTCTCTGGTTTAAGGCAAGAAACTACAAG | + |
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Preference number: 3 (lower is better) Translates to: EQDPKWFLCTLN*ETLWFKARNYK Trigger: CTTGTAGTTTCTTGCCTTAAACCAGAGAGTTTCCCAATTTAATGTGCACAGGAACCACTTAGGGTCTTGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR GCA 72 bp | GATGCTTTTGTTCCAAGCTTACTCGAGAGAGACCCATaGCTAACAACTCCATTCTTTTTCAAGGTGATTATT | + |
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Preference number: 3 (lower is better) Translates to: DAFVPSLLERDP*LTTPFFFKVII Trigger: AATAATCACCTTGAAAAAGAATGGAGTTGTTAGGCATGGGTCTCTCTCGAGTAAGCTTGGAACAAAAGCATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| 3UTR TCA 72 bp | TTAAAGTCACTTTTGTCTCTGTGCTCTCATAATGGGTaGCTATGTATGGCTGTCATAGTTTTCATACCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LKSLLSLCSHNG*LCMAVIVFIPL Trigger: AAGAGGTATGAAAACTATGACAGCCATACATAGTCACCCATTATGAGAGCACAGAGACAAAAGTGACTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR TCA 90 bp | TGTGGTAGCATGAAGAAGTCTGGAAACACCCTTCCATGGGCCCACTGGCATGGGAGACTCTCTCCCTTCTaGGCAGCTGTCTGGAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: CGSMKKSGNTLPWAHWHGRLSPF*AAVWKK Trigger: CTTTTTCCAGACAGCTGCTCAGAAGGGAGAGAGTCT...CCCATGCCAGTGGGCCCATGGAAGGGTGTTTCCAGACTTCTTCATGCTACCACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR GCA 90 bp | GAATGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTTGCCGAGTAGAGCTGTCTGGAAAAAGTaGCGCTACCCTGAGGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: ECPQTDMLRHNALGLPSRAVWKK*RYPEVP Trigger: CGGCACCTCAGGGTAGCGGCACTTTTTCCAGACAGC...TCTACTCGGCAAACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR CCA 90 bp | TCTGCTTTGACTCACCCAAGCCAGGGGAGATGCTTTTGTTCCAAGCTTACTCGAACACTGCATGAGAGATaGGGAAGCACTCACCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SALTHPSQGRCFCSKLTRTLHER*GSTHLL Trigger: CAAGAGGTGAGTGCTTCCCCATCTCTCATGCAGTGT...TCGAGTAAGCTTGGAACAAAAGCATCTCCCCTGGCTTGGGTGAGTCAAAGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR CCA 90 bp | TCTGCTTTGACTCACCCAAGCCAGGGGAGATGCTTTTGTTCCAAGCTTACTCGAAAGAAGGCAACTGGATaGAAGTCTCTTGCAGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: SALTHPSQGRCFCSKLTRKKATG*KSLAER Trigger: CCTCTCTGCAAGAGACTTCCATCCAGTTGCCTTCTT...TCGAGTAAGCTTGGAACAAAAGCATCTCCCCTGGCTTGGGTGAGTCAAAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR CCA 90 bp | TGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTTGCCGAGTAGATCTAAGAAGGCAACTGGATaGAAGTCTCTTGCAGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: CPQTDMLRHNALGLPSRSKKATG*KSLAER Trigger: CCTCTCTGCAAGAGACTTCCATCCAGTTGCCTTCTT...AGATCTACTCGGCAAACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| CDS-3UTR TCA 90 bp | AGCCAGAAGCCCTTGATCCCTTCCTTCCCTGACATTTTAGCTTTTGGCTACTTCCACTCACCTCTTGGTTaGAGATATGAATTAGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SQKPLIPSFPDILAFGYFHSPLG*RYELEF Trigger: AAACTCTAATTCATATCTTCAACCAAGAGGTGAGTG...GAAGTAGCCAAAAGCTAAAATGTCAGGGAAGGAAGGGATCAAGGGCTTCTGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR GCA 90 bp | TGTCAGTTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATTCCTCTTTCCCACACTaGATGAGAGATGGGGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CQFFVENNISQIPDNRIYSSFPH*MRDGEA Trigger: TGCTTCCCCATCTCTCATGCAGTGTGGGAAAGAGGA...ATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAACTGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR CCA 90 bp | GAATGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTTGCCGAGTAGACTCTCTGAAGGACTCTaGCTTTGTCTTTCTTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: ECPQTDMLRHNALGLPSRLSEGL*LCLSCY Trigger: ATAACAAGAAAGACAAAGCCAGAGTCCTTCAGAGAG...TCTACTCGGCAAACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| 3UTR CAA 72 bp | AATTCTTCAAGTGATTTCAAGATGAATTGGATGGTCTaGGTCCTTAGCCACTCCTTCTGTGACTCCAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: NSSSDFKMNWMV*VLSHSFCDSSL Trigger: TAAGCTGGAGTCACAGAAGGAGTGGCTAAGGACCAAGACCATCCAATTCATCTTGAAATCACTTGAAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR GCA 90 bp | GACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTATTGTTTTCTGCAAGTaGATCATCGTTGTTCATACA | + |
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Preference number: 4 (lower is better) Translates to: DHSEECPQTDMLRHNALGIVFCK*IIVVHT Trigger: TGTATGAACAACGATGATGCACTTGCAGAAAACAAT...ACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| CDS-3UTR GCA 90 bp | GACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTTTCAGATTGTTTTCTaGAAGTGCATCATCGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: DHSEECPQTDMLRHNALGFQIVF*KCIIVV Trigger: AACAACGATGATGCACTTGCAGAAAACAATCTGAAA...ACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| CDS-3UTR CCA 90 bp | TGTCAGTTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATAAGAAGGCAACTGGATaGAAGTCTCTTGCAGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: CQFFVENNISQIPDNRIYKKATG*KSLAER Trigger: CCTCTCTGCAAGAGACTTCCATCCAGTTGCCTTCTT...ATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAACTGACA 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 |
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| 3UTR CAA 72 bp | TCCTTCTGTGACTCCAGCTTATCTGTTAGGAGAGCATaGGAAATTGGGGTAGGAAGGACTATTTTATGTAAA | + |
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Preference number: 4 (lower is better) Translates to: SFCDSSLSVRRA*EIGVGRTILCK Trigger: TTTACATAAAATAGTCCTTCCTACCCCAATTTCCAATGCTCTCCTAACAGATAAGCTGGAGTCACAGAAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR CCA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACCTCTCTGAAGGACTCTaGCTTTGTCTTTCTTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: IFSDHSEECPQTDMLRHNLSEGL*LCLSCY Trigger: ATAACAAGAAAGACAAAGCCAGAGTCCTTCAGAGAG...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS-3UTR TCA 90 bp | TTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATTTTCTGCAAGTGATTTCAAGATaGATTGGATGGTCTTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: FFVENNISQIPDNRIYFLQVISR*IGWSWS Trigger: GGACCAAGACCATCCAATTCATCTTGAAATCACTTG...CAGAAAATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026845.12 ENSMUST00000199765.2 |
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| CDS-3UTR TCA 90 bp | CAGTTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATTTTCAAGTGATTTCAAGATaGATTGGATGGTCTTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QFFVENNISQIPDNRIYFQVISR*IGWSWS Trigger: GGACCAAGACCATCCAATTCATCTTGAAATCACTTG...AAAATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026845.12 ENSMUST00000199765.2 |
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| CDS-3UTR GCA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACATTGTTTTCTGCAAGTaGATCATCGTTGTTCATACA | + |
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Preference number: 4 (lower is better) Translates to: IFSDHSEECPQTDMLRHNIVFCK*IIVVHT Trigger: TGTATGAACAACGATGATGCACTTGCAGAAAACAAT...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS-3UTR GCA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACTTTCAGATTGTTTTCTaGAAGTGCATCATCGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: IFSDHSEECPQTDMLRHNFQIVF*KCIIVV Trigger: AACAACGATGATGCACTTGCAGAAAACAATCTGAAA...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS-3UTR GCA 90 bp | CAGTTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATTTTATTGTTTTCTGCAAGTaGATCATCGTTGTTCATACA | + |
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Preference number: 4 (lower is better) Translates to: QFFVENNISQIPDNRIYFIVFCK*IIVVHT Trigger: TGTATGAACAACGATGATGCACTTGCAGAAAACAAT...AAAATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAACTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS-3UTR CAA 90 bp | TCTGCTTTGACTCACCCAAGCCAGGGGAGATGCTTTTGTTCCAAGCTTACTCGATATAATCAAGAACTGTaGTTCAGACTCTCTCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: SALTHPSQGRCFCSKLTRYNQEL*FRLSPF Trigger: GAAGGGAGAGAGTCTGAACAACAGTTCTTGATTATA...TCGAGTAAGCTTGGAACAAAAGCATCTCCCCTGGCTTGGGTGAGTCAAAGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS-3UTR CAA 90 bp | GACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTCTGGAAGTTTCAGATaGTTTTCTGCAAGTGCATCA | + |
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Preference number: 5 (lower is better) Translates to: DHSEECPQTDMLRHNALGSGSFR*FSASAS Trigger: TGATGCACTTGCAGAAAACAATCTGAAACTTCCAGA...ACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| CDS-3UTR CAA 90 bp | GAATGTCCACAAACTGATATGCTTAGGCATAACGCACTAGGTTTGCCGAGTAGACAATCAGAATTGCCATaGCACAACTCTTTTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: ECPQTDMLRHNALGLPSRQSELP*HNSFLI Trigger: AATGAGAAAAGAGTTGTGCAATGGCAATTCTGATTG...TCTACTCGGCAAACCTAGTGCGTTATGCCTAAGCATATCAGTTTGTGGACATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000195978.5 ENSMUST00000199183.5 |
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| CDS-3UTR CAA 90 bp | TTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATTTTCTGTCTGTTAGGAGAGCATaGGAAATTGGGGTAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: FFVENNISQIPDNRIYFLSVRRA*EIGVGR Trigger: CCTTCCTACCCCAATTTCCAATGCTCTCCTAACAGA...CAGAAAATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026845.12 ENSMUST00000199765.2 |
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| CDS-3UTR CAA 90 bp | ATATTTTCTGACCACAGTGAGGAATGTCCACAAACTGATATGCTTAGGCATAACTCTGGAAGTTTCAGATaGTTTTCTGCAAGTGCATCA | + |
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Preference number: 5 (lower is better) Translates to: IFSDHSEECPQTDMLRHNSGSFR*FSASAS Trigger: TGATGCACTTGCAGAAAACAATCTGAAACTTCCAGA...GTTATGCCTAAGCATATCAGTTTGTGGACATTCCTCACTGTGGTCAGAAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS-3UTR CAA 90 bp | TGTCAGTTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATCAATCAGAATTGCCATaGCACAACTCTTTTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: CQFFVENNISQIPDNRIYQSELP*HNSFLI Trigger: AATGAGAAAAGAGTTGTGCAATGGCAATTCTGATTG...ATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAACTGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS-3UTR CAA 90 bp | CAGTTCTTCGTAGAGAACAACATAAGTCAGATACCTGACAACAGGATATATTTTTCTGGAAGTTTCAGATaGTTTTCTGCAAGTGCATCA | + |
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Preference number: 5 (lower is better) Translates to: QFFVENNISQIPDNRIYFSGSFR*FSASAS Trigger: TGATGCACTTGCAGAAAACAATCTGAAACTTCCAGA...AAAATATATCCTGTTGTCAGGTATCTGACTTATGTTGTTCTCTACGAAGAACTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000026845.12 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS CCA 72 bp | GTGCCGGGTGTCCTCTTTCCCACACTGCATGAGAGATaGGGAAGCACTCACCTCTTGGTTGAAGATATGAAT | + |
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Preference number: 6 (lower is better) Translates to: VPGVLFPTLHER*GSTHLLVEDMN Trigger: ATTCATATCTTCAACCAAGAGGTGAGTGCTTCCCCATCTCTCATGCAGTGTGGGAAAGAGGACACCCGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS TCA 72 bp | TATAATCAAGAACTGTTGTTCAGACTCTCTCCCTTCTaGGCAGCTGTCTGGAAAAAGTGCCGCTACCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: YNQELLFRLSPF*AAVWKKCRYPE Trigger: CTCAGGGTAGCGGCACTTTTTCCAGACAGCTGCTCAGAAGGGAGAGAGTCTGAACAACAGTTCTTGATTATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199183.5 |
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| CDS TCA 72 bp | AGCCACTCCTTCTGTGACTCCAGCTTATCTCTTGGTTaGAGATATGAATTAGAGTTTCTGTATCTCTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: SHSFCDSSLSLG*RYELEFLYLSE Trigger: TTCAGAGAGATACAGAAACTCTAATTCATATCTTCAACCAAGAGATAAGCTGGAGTCACAGAAGGAGTGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195978.5 |
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| CDS GCA 72 bp | GTGCATCATCGTTGTTCATACAATCAGAATTGCCATTaGACAACTCTTTTCTCATTTCCACGATTTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: VHHRCSYNQNCH*TTLFSFPRFPR Trigger: TCTGGGAAATCGTGGAAATGAGAAAAGAGTTGTGCAATGGCAATTCTGATTGTATGAACAACGATGATGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026845.12 ENSMUST00000195978.5 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS CAA 72 bp | GGAAGTTTCAGATTGTTTTCTGCAAGTGCATCATCGTaGTTCATACAATCAGAATTGCCATTGCACAACTCT | + |
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Preference number: 6 (lower is better) Translates to: GSFRLFSASASS*FIQSELPLHNS Trigger: AGAGTTGTGCAATGGCAATTCTGATTGTATGAACAACGATGATGCACTTGCAGAAAACAATCTGAAACTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026845.12 ENSMUST00000195978.5 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS CAA 90 bp | TGTATCTCTGGAAGTTTCAGATTGTTTTCTGCAAGTGCATCATCGTaGTTCATACAATCAGAATTGCCATTGCACAACTCTTTTCTCATT | + |
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Preference number: 6 (lower is better) Translates to: CISGSFRLFSASASS*FIQSELPLHNSFLI Trigger: AATGAGAAAAGAGTTGTGCAATGGCAATTCTGATTGTATGAACAACGATGATGCACTTGCAGAAAACAATCTGAAACTTCCAGAGATACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000026845.12 ENSMUST00000195978.5 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS CAA 90 bp | GCAAATTTCCTGATTATATCCAGTTTGGTAGCATCCATCATTTCTTaGTATCTCTGGAAGTTTCAGATTGTTTTCTGCAAGTGCATCATC | + |
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Preference number: 6 (lower is better) Translates to: ANFLIISSLVASIIS*YLWKFQIVFCKCII Trigger: GATGATGCACTTGCAGAAAACAATCTGAAACTTCCAGAGATACAAAGAAATGATGGATGCTACCAAACTGGATATAATCAGGAAATTTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026845.12 ENSMUST00000195978.5 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS GCA 72 bp | TTGTATCTCTGGAAGTTTCAGATTGTTTTCTGCAAGTaGATCATCGTTGTTCATACAATCAGAATTGCCATT | + |
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Preference number: 6 (lower is better) Translates to: LYLWKFQIVFCK*IIVVHTIRIAI Trigger: AATGGCAATTCTGATTGTATGAACAACGATGATGCACTTGCAGAAAACAATCTGAAACTTCCAGAGATACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026845.12 ENSMUST00000195978.5 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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| CDS CAA 72 bp | CTGATTATATCCAGTTTGGTAGCATCCATCATTTCTTaGTATCTCTGGAAGTTTCAGATTGTTTTCTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: LIISSLVASIIS*YLWKFQIVFCK Trigger: CTTGCAGAAAACAATCTGAAACTTCCAGAGATACAAAGAAATGATGGATGCTACCAAACTGGATATAATCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026845.12 ENSMUST00000195978.5 ENSMUST00000199183.5 ENSMUST00000199765.2 |
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