RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL4RA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030748

Ensembl transcript IDs: ENSMUST00000033004.8, ENSMUST00000205985.2, ENSMUST00000206217.2, ENSMUST00000206846.2

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGCTGGGCTGCCTGAAAGAGGGCCTGGGTGTGAAGGCTGCTCTGTaGCCTGGCATGTGGCCTCCTCACTGGGCCCCATGGGGAGGCAGG +
Preference number: 1 (lower is better)
Translates to: GLGCLKEGLGVKAAL*PGMWPPHWAPWGGR
Trigger: CCTGCCTCCCCATGGGGCCCAGTGAGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTTTCAGGCAGCCCAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 90 bp GCACTCTGGGCTGGGCTGCCTGAAAGAGGGCCTGGGTGTGAAGGCTaGTCTGTGACCTGGCATGTGGCCTCCTCACTGGGCCCCATGGGG +
Preference number: 1 (lower is better)
Translates to: ALWAGLPERGPGCEG*SVTWHVASSLGPMG
Trigger: CCCCATGGGGCCCAGTGAGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTTTCAGGCAGCCCAGCCCAGAGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp ACCACCAACCAGGACCAGCCCCACAGTTCCCTCGAGGTATCGCCTTaGCTGCCAGTTATCGTGCCCGCTGGGCCCTGCCACCCGGCAACT +
Preference number: 1 (lower is better)
Translates to: TTNQDQPHSSLEVSP*LPVIVPAGPCHPAT
Trigger: AGTTGCCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCTGGTCCTGGTTGGTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR TCA 90 bp AGGGCGCCCACAGGCACCTCGGTCGTCTGGCTGGGAACAGGAGAGTaGCCAGGGCCCTTGCCCTCCCCTGACAAGTTTGAGGGTGTCTTG +
Preference number: 1 (lower is better)
Translates to: RAPTGTSVVWLGTGE*PGPLPSPDKFEGVL
Trigger: CAAGACACCCTCAAACTTGTCAGGGGAGGGCAAGGGCCCTGGTCACTCTCCTGTTCCCAGCCAGACGACCGAGGTGCCTGTGGGCGCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 90 bp CCAACCAGGACCAGCCCCACAGTTCCCTCGAGGTATCGCCTTGACTaGCAGTTATCGTGCCCGCTGGGCCCTGCCACCCGGCAACTGTGT +
Preference number: 1 (lower is better)
Translates to: PTRTSPTVPSRYRLD*QLSCPLGPATRQLC
Trigger: ACACAGTTGCCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCTGGTCCTGGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 90 bp CTGCTTCACTGCCTGCACAAACTCCTGGTAGCCACCGGCAGGGGCTaGGGTGGAGCCAGCAGCTGCCCCATGCTGCAGGACACTCATGTG +
Preference number: 1 (lower is better)
Translates to: LLHCLHKLLVATGRG*GGASSCPMLQDTHV
Trigger: CACATGAGTGTCCTGCAGCATGGGGCAGCTGCTGGCTCCACCCCAGCCCCTGCCGGTGGCTACCAGGAGTTTGTGCAGGCAGTGAAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp AAACAGCAATGCCCAGGGCGCCCACAGGCACCTCGGTCGTCTGGCTaGGAACAGGAGAGTGACCAGGGCCCTTGCCCTCCCCTGACAAGT +
Preference number: 1 (lower is better)
Translates to: KQQCPGRPQAPRSSG*EQESDQGPCPPLTS
Trigger: ACTTGTCAGGGGAGGGCAAGGGCCCTGGTCACTCTCCTGTTCCCAGCCAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp GCCCAGGACTTAGGAACGTCAGCACTGCTGTGGGACCAAGCACAGTaGGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGG +
Preference number: 1 (lower is better)
Translates to: AQDLGTSALLWDQAQ*APVSLGREESPGQW
Trigger: CCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCAGTGCTGACGTTCCTAAGTCCTGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR GCA 90 bp CTCTGGCCAGAGGACGGTCCTGCTGACCTCCATGGGACACCAGCCTaGCTTTCCAGGACTCTGGAGAGACTTGGTTGGGGCAGCCTTCGG +
Preference number: 1 (lower is better)
Translates to: LWPEDGPADLHGTPA*LSRTLERLGWGSLR
Trigger: CCGAAGGCTGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATGGAGGTCAGCAGGACCGTCCTCTGGCCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp GTCAGCACTGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTaGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGACAGCCAGG +
Preference number: 1 (lower is better)
Translates to: VSTAVGPSTVSPCIP*EGGEPRPVEEETAR
Trigger: CCTGGCTGTCTCCTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCAGTGCTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 90 bp GCAAGGACAAGTGGGACCTGCGTGCAAGCCAGAGTAGGTGCACTCTaGGCTGGGCTGCCTGAAAGAGGGCCTGGGTGTGAAGGCTGCTCT +
Preference number: 1 (lower is better)
Translates to: ARTSGTCVQARVGAL*AGLPERGPGCEGCS
Trigger: AGAGCAGCCTTCACACCCAGGCCCTCTTTCAGGCAGCCCAGCCCAGAGTGCACCTACTCTGGCTTGCACGCAGGTCCCACTTGTCCTTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp CCAGGGCTAGCAACGATGGGGCTCTGGCCACCTTCCTCCTGGCTGTaGTGTTGCTTCAGGTGGCCACACAAGTGGCAAGTGAGGGACGAG +
Preference number: 1 (lower is better)
Translates to: PGLATMGLWPPSSWL*CCFRWPHKWQVRDE
Trigger: CTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGCTAGCCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp CCACAGCCAGGGCTAGCAACGATGGGGCTCTGGCCACCTTCCTCCTaGCTGTGGTGTTGCTTCAGGTGGCCACACAAGTGGCAAGTGAGG +
Preference number: 1 (lower is better)
Translates to: PQPGLATMGLWPPSS*LWCCFRWPHKWQVR
Trigger: CCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGCTAGCCCTGGCTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp GTGAAGGATCTGCTCCCAGCTCTCCACTGGCTGCATTGGTGGCCCTaGAGAATGGGGGTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAG +
Preference number: 1 (lower is better)
Translates to: VKDLLPALHWLHWWP*RMGVSRAWRLLFFQ
Trigger: CTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACCAATGCAGCCAGTGGAGAGCTGGGAGCAGATCCTTCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp CTCAGGACAGCTTTCCAAGGCCCCCGAGAGGCTCCCCAGGGATGGTaGTCTGTCATCGTAGCAGCAGCCACAGCCAGGGCTAGCAACGAT +
Preference number: 1 (lower is better)
Translates to: LRTAFQGPREAPQGW*SVIVAAATARASND
Trigger: ATCGTTGCTAGCCCTGGCTGTGGCTGCTGCTACGATGACAGATCACCATCCCTGGGGAGCCTCTCGGGGGCCTTGGAAAGCTGTCCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp TCCTGGCTTCGGGTCTGCTTATCCCAGAGGGGCACCTGTGCATCCTaGATGATGATGGCCACCAAGGGACTGCGTGCTGGGGTGGGAATC +
Preference number: 1 (lower is better)
Translates to: SWLRVCLSQRGTCAS*MMMATKGLRAGVGI
Trigger: GATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCATCATCATTCAGGATGCACAGGTGCCCCTCTGGGATAAGCAGACCCGAAGCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp GAAGAATGGGGGTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAGATaGTCAGCCTGCTGCTGCTCTGGAGCCAGCTCTCCAGGATTTGGG +
Preference number: 1 (lower is better)
Translates to: EEWGSAGLGGSSSSR*SACCCSGASSPGFG
Trigger: CCCAAATCCTGGAGAGCTGGCTCCAGAGCAGCAGCAGGCTGATCATCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCCATTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 90 bp AGCCCCACAGTTCCCTCGAGGTATCGCCTTGACTGCCAGTTATCGTaGCCGCTGGGCCCTGCCACCCGGCAACTGTGTTTGTTTATCTTC +
Preference number: 1 (lower is better)
Translates to: SPTVPSRYRLDCQLS*PLGPATRQLCLFIF
Trigger: GAAGATAAACAAACACAGTTGCCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR GCA 90 bp GGAAGTCCATCTCCTGCGTTTCTGCTTTTGACACGCCAGCTACACTaGTCCAGGATTCCCGTGAGCTCTCCTCACCACCGCAGCCCCCAA +
Preference number: 1 (lower is better)
Translates to: GSPSPAFLLLTRQLH*SRIPVSSPHHRSPQ
Trigger: TTGGGGGCTGCGGTGGTGAGGAGAGCTCACGGGAATCCTGGAGCAGTGTAGCTGGCGTGTCAAAAGCAGAAACGCAGGAGATGGACTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 90 bp AGACCTCAGCAACAACAGCACACTCACTCACCTAAGAAACAGCAATaGCCAGGGCGCCCACAGGCACCTCGGTCGTCTGGCTGGGAACAG +
Preference number: 1 (lower is better)
Translates to: RPQQQQHTHSPKKQQ*PGRPQAPRSSGWEQ
Trigger: CTGTTCCCAGCCAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAGGTGAGTGAGTGTGCTGTTGTTGCTGAGGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTaGAGGAACCCTGGCCTCAGCACAGACCTCAGCAACAACAGCACA +
Preference number: 1 (lower is better)
Translates to: ETCQLGCLPGSTSLA*RNPGLSTDLSNNST
Trigger: TGTGCTGTTGTTGCTGAGGTCTGTGCTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 90 bp TTCTCCTTCAGCCAGGCAGGAGGGATGCCCACAGGAGGTAGATCTTaGATGGCTCCGTTTCCTCTCCTCCCCTGCTTAGGGGCTGTGGTA +
Preference number: 1 (lower is better)
Translates to: FSFSQAGGMPTGGRS*MAPFPLLPCLGAVV
Trigger: TACCACAGCCCCTAAGCAGGGGAGGAGAGGAAACGGAGCCATCCAAGATCTACCTCCTGTGGGCATCCCTCCTGCCTGGCTGAAGGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 90 bp TACACAATACCAAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTaGTCTGCAGGAGGAGGGGCCTTCACCCAGTCACCTCCTTTGAGC +
Preference number: 1 (lower is better)
Translates to: YTIPKPRSSPKGLGT*SAGGGAFTQSPPLS
Trigger: GCTCAAAGGAGGTGACTGGGTGAAGGCCCCTCCTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTTGGTATTGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 90 bp CCCACAGGAGGTAGATCTTGGATGGCTCCGTTTCCTCTCCTCCCCTaGTTAGGGGCTGTGGTAAGACTGCTCTGGGAAGCTGGGTGTAGT +
Preference number: 1 (lower is better)
Translates to: PTGGRSWMAPFPLLP*LGAVVRLLWEAGCS
Trigger: ACTACACCCAGCTTCCCAGAGCAGTCTTACCACAGCCCCTAAGCAGGGGAGGAGAGGAAACGGAGCCATCCAAGATCTACCTCCTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 90 bp CCCAGTGGAAGGCGCTGTATCAGGGGCAGCTGGAAGTCCATCTCCTaGGTTTCTGCTTTTGACACGCCAGCTACACTGCTCCAGGATTCC +
Preference number: 1 (lower is better)
Translates to: PSGRRCIRGSWKSIS*VSAFDTPATLLQDS
Trigger: GGAATCCTGGAGCAGTGTAGCTGGCGTGTCAAAAGCAGAAACGCAGGAGATGGACTTCCAGCTGCCCCTGATACAGCGCCTTCCACTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp CTCAAACAGCTCCATACAGCGCACCACACTGACACTAACATTCTCTaGCCAGAGGACGGTCCTGCTGACCTCCATGGGACACCAGCCTGC +
Preference number: 1 (lower is better)
Translates to: LKQLHTAHHTDTNIL*PEDGPADLHGTPAC
Trigger: GCAGGCTGGTGTCCCATGGAGGTCAGCAGGACCGTCCTCTGGCCAGAGAATGTTAGTGTCAGTGTGGTGCGCTGTATGGAGCTGTTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp CCTCCTGGCTGTGGTGTTGCTTCAGGTGGCCACACAAGTGGCAAGTaGGGGACGAGTACACAATACCAAAGCCCAGGTCATCCCCAAAGG +
Preference number: 1 (lower is better)
Translates to: PPGCGVASGGHTSGK*GTSTQYQSPGHPQR
Trigger: CCTTTGGGGATGACCTGGGCTTTGGTATTGTGTACTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp CCACCTTCCTCCTGGCTGTGGTGTTGCTTCAGGTGGCCACACAAGTaGCAAGTGAGGGACGAGTACACAATACCAAAGCCCAGGTCATCC +
Preference number: 1 (lower is better)
Translates to: PPSSWLWCCFRWPHK*QVRDEYTIPKPRSS
Trigger: GGATGACCTGGGCTTTGGTATTGTGTACTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp ATGGGGCTCTGGCCACCTTCCTCCTGGCTGTGGTGTTGCTTCAGGTaGCCACACAAGTGGCAAGTGAGGGACGAGTACACAATACCAAAG +
Preference number: 1 (lower is better)
Translates to: MGLWPPSSWLWCCFR*PHKWQVRDEYTIPK
Trigger: CTTTGGTATTGTGTACTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCAGAGCCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp CCTTGCCCTCCCCTGACAAGTTTGAGGGTGTCTTGGGTGCTGACATaGGGTTGGCTTCTGGTGGTATTCCCTCAGGACAGCTTTCCAAGG +
Preference number: 1 (lower is better)
Translates to: PCPPLTSLRVSWVLT*GWLLVVFPQDSFPR
Trigger: CCTTGGAAAGCTGTCCTGAGGGAATACCACCAGAAGCCAACCTCATGTCAGCACCCAAGACACCCTCAAACTTGTCAGGGGAGGGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp CCTCCATGGGACACCAGCCTGCCTTTCCAGGACTCTGGAGAGACTTaGTTGGGGCAGCCTTCGGGAAGTCTGTCTTCTTCTTTACTCTGT +
Preference number: 1 (lower is better)
Translates to: PPWDTSLPFQDSGET*LGQPSGSLSSSLLC
Trigger: ACAGAGTAAAGAAGAAGACAGACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp GGAGCGGGTATAAGCAGTGGAAGGGGGTGGAAGGTGGAGGACCAGTaGAGAAATCCTGGGCTAATCCAGAGGTCAGAGCTTGAAGGTCAA +
Preference number: 1 (lower is better)
Translates to: GAGISSGRGWKVEDQ*RNPGLIQRSELEGQ
Trigger: TTGACCTTCAAGCTCTGACCTCTGGATTAGCCCAGGATTTCTTCACTGGTCCTCCACCTTCCACCCCCTTCCACTGCTTATACCCGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 90 bp TCCCATCTTCCAGAACACAGTCAGACTCACTCACTCACCAAAGTCTaGCATCTGCTATCCCTACCACCTGACCACCAACCAGGACCAGCC +
Preference number: 1 (lower is better)
Translates to: SHLPEHSQTHSLTKV*HLLSLPPDHQPGPA
Trigger: GGCTGGTCCTGGTTGGTGGTCAGGTGGTAGGGATAGCAGATGGCAGACTTTGGTGAGTGAGTGAGTCTGACTGTGTTCTGGAAGATGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR GCA 90 bp GGGCACCTGTGCATCCTGAATGATGATGGCCACCAAGGGACTGCGTaGTGGGGTGGGAATCTGGTCCCACCATATCTTCTTAATCTTGGT +
Preference number: 1 (lower is better)
Translates to: GHLCILNDDGHQGTA*WGGNLVPPYLLNLG
Trigger: ACCAAGATTAAGAAGATATGGTGGGACCAGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCATCATCATTCAGGATGCACAGGTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 90 bp CATCTTCAATTCACCATTCTCTGGATTTCTGGGAAACCTGCCAGCTaGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACCCTG +
Preference number: 1 (lower is better)
Translates to: HLQFTILWISGKPAS*AVSQEVLPWLGGTL
Trigger: CAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTCCCAGAAATCCAGAGAATGGTGAATTGAAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR TCA 90 bp AAACTCCCTGGCTGTCAGCCACTGTTAAAGACAGGCACCACCAGCTaGAGGGAGGTACTTTACAGAGGAAGTTCTAAAGGCACAGCGGGA +
Preference number: 1 (lower is better)
Translates to: KLPGCQPLLKTGTTS*REVLYRGSSKGTAG
Trigger: TCCCGCTGTGCCTTTAGAACTTCCTCTGTAAAGTACCTCCCTTCAGCTGGTGGTGCCTGTCTTTAACAGTGGCTGACAGCCAGGGAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 90 bp GCACTCAGGAGACCGAGTGATGCTAGAGGCCCGTCTGAGCCACACTaGGACCTTGTCTTTGAAAAGACTGTTCTGAGATGTGAAAGTCTG +
Preference number: 1 (lower is better)
Translates to: ALRRPSDARGPSEPH*DLVFEKTVLRCESL
Trigger: CAGACTTTCACATCTCAGAACAGTCTTTTCAAAGACAAGGTCTCAGTGTGGCTCAGACGGGCCTCTAGCATCACTCGGTCTCCTGAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CCA 90 bp GGTCAGGCCAAGTTTACATCTTCAATTCACCATTCTCTGGATTTCTaGGAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTG +
Preference number: 1 (lower is better)
Translates to: GQAKFTSSIHHSLDF*ETCQLGCLPGSTSL
Trigger: CAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTCCCAGAAATCCAGAGAATGGTGAATTGAAGATGTAAACTTGGCCTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 90 bp CACCTGTGCATCCTGAATGATGATGGCCACCAAGGGACTGCGTGCTaGGGTGGGAATCTGGTCCCACCATATCTTCTTAATCTTGGTAAT +
Preference number: 1 (lower is better)
Translates to: HLCILNDDGHQGTAC*GGNLVPPYLLNLGN
Trigger: ATTACCAAGATTAAGAAGATATGGTGGGACCAGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCATCATCATTCAGGATGCACAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 90 bp TTGGTTGGGGCAGCCTTCGGGAAGTCTGTCTTCTTCTTTACTCTGTaGTTCAGCAAGCAAGGCAGCAGCTTGTCTAGACAAGTTTTCCAG +
Preference number: 1 (lower is better)
Translates to: LVGAAFGKSVFFFTL*FSKQGSSLSRQVFQ
Trigger: CTGGAAAACTTGTCTAGACAAGCTGCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAAGAAGACAGACTTCCCGAAGGCTGCCCCAACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 90 bp CATCCCAGGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTaGCTTTGGGCAATCAAGTTTGTGTCCTTGTTGCTTTCTACAACT +
Preference number: 1 (lower is better)
Translates to: HPRSPGFWSYVGNWQ*LWAIKFVSLLLSTT
Trigger: AGTTGTAGAAAGCAACAAGGACACAAACTTGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCCTGGGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 90 bp GTACTTTACAGAGGAAGTTCTAAAGGCACAGCGGGAAGAATTTCCTaGGACAGTCAGTTCATTCCTGTGGGAGTCACTTCCCTCCAGGAT +
Preference number: 1 (lower is better)
Translates to: VLYRGSSKGTAGRIS*DSQFIPVGVTSLQD
Trigger: ATCCTGGAGGGAAGTGACTCCCACAGGAATGAACTGACTGTCCCAGGAAATTCTTCCCGCTGTGCCTTTAGAACTTCCTCTGTAAAGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 90 bp ACCACGGGCTCATCTCAAAAGTGGCCTCCTTCAAGCCTCCCTAAGTaGCCTGTCTCTGTCTTTCCTTCTGAACATCATATTCAAGTTCTC +
Preference number: 1 (lower is better)
Translates to: TTGSSQKWPPSSLPK*PVSVFPSEHHIQVL
Trigger: GAGAACTTGAATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGAGGCTTGAAGGAGGCCACTTTTGAGATGAGCCCGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 90 bp GCTTTCGTGCACTGTGGGCTCGGCGTGTGTATAGTAAAGGAAACCTaGCAAGATAAAGACTTTATTGACATAAAGCTCCATGTGACCTGT +
Preference number: 1 (lower is better)
Translates to: AFVHCGLGVCIVKET*QDKDFIDIKLHVTC
Trigger: ACAGGTCACATGGAGCTTTATGTCAATAAAGTCTTTATCTTGTCAGGTTTCCTTTACTATACACACGCCGAGCCCACAGTGCACGAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR CCA 90 bp GGGCGGCACCCTGCTTCACTGCCTGCACAAACTCCTGGTAGCCACCGGCAGGGGAGCCCCTGTATCCCTTaGGAGGGAGGAGAGCCCAGG +
Preference number: 2 (lower is better)
Translates to: GRHPASLPAQTPGSHRQGSPCIP*EGGEPR
Trigger: CCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCT...CCCCTGCCGGTGGCTACCAGGAGTTTGTGCAGGCAGTGAAGCAGGGTGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CAA 90 bp GACCACCAACCAGGACCAGCCCCACAGTTCCCTCGAGGTATCGCCTaGACTGCCAGTTATCGTGCCCGCTGGGCCCTGCCACCCGGCAAC +
Preference number: 2 (lower is better)
Translates to: DHQPGPAPQFPRGIA*TASYRARWALPPGN
Trigger: GTTGCCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCTGGTCCTGGTTGGTGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGATCTGCAGGAGGAGGGGCTCTGCCTGGCTCTCCTaGAAGCCGCAGCCTCCGCTG +
Preference number: 2 (lower is better)
Translates to: KAQVIPKGLGHLICRRRGSAWLS*KPQPPL
Trigger: CAGCGGAGGCTGCGGCTTCCAGGAGAGCCAGGCAGA...GCCCCTCCTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGCCTCACTGGGCCCCATaGGGAGGCAGGCCCAGGATA +
Preference number: 2 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEPHWAP*GGRPRI
Trigger: TATCCTGGGCCTGCCTCCCCATGGGGCCCAGTGAGG...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CAA 90 bp CGTCAGCACTGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTaGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGACAGCCAG +
Preference number: 2 (lower is better)
Translates to: RQHCCGTKHSEPLYP*GGRRAQASGRGDSQ
Trigger: CTGGCTGTCTCCTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCAGTGCTGACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGATCGTCAGTCCCCGCTaGTGCTGTGTCCCCGCGGAT +
Preference number: 2 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEIVSPR*CCVPAD
Trigger: ATCCGCGGGGACACAGCAGCAGCGGGGACTGACGAT...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGGGTGTCTTGGGTGCTaGCATGAGGTTGGCTTCTGG +
Preference number: 2 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEGCLGC*HEVGFW
Trigger: CCAGAAGCCAACCTCATGTCAGCACCCAAGACACCC...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGCATGGGACACCAGCCTaGCTTTCCAGGACTCTGGAG +
Preference number: 2 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEHGTPA*LSRTLE
Trigger: CTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATG...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACGGTGGCCCTGAAGAATaGGGGTCAGCCGGGCTTGGA +
Preference number: 2 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNGGPEE*GSAGLG
Trigger: TCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACC...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp TGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCGATTTCTGGGAAACCTaGCAGCTGGGCTGTCTCCCA +
Preference number: 2 (lower is better)
Translates to: CCGTKHSEPLYPLGGRRADFWET*QLGCLP
Trigger: TGGGAGACAGCCCAGCTGGCAGGTTTCCCAGAAATC...GGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp GGTGGCCCTGAAGAATGGGGGTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAGAGATTTCTGGGAAACCTaGCAGCTGGGCTGTCTCCCA +
Preference number: 2 (lower is better)
Translates to: GGPEEWGSAGLGGSSSSRDFWET*QLGCLP
Trigger: TGGGAGACAGCCCAGCTGGCAGGTTTCCCAGAAATC...TCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp GGACGAGTACACAATACCAAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGGCAAGCCAGAGTAGGTaGACTCTGGGCTGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: GRVHNTKAQVIPKGLGHLASQSR*TLGWAA
Trigger: GGCAGCCCAGCCCAGAGTGCACCTACTCTGGCTTGC...CAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTTGGTATTGTGTACTCGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACGGCTTGGAGGAACCCTaGCCTCAGCACAGACCTCAG +
Preference number: 2 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNGLEEP*PQHRPQ
Trigger: CTGAGGTCTGTGCTGAGGCCAGGGTTCCTCCAAGCC...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GAACGTCAGCACTGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTGGGAGGCTTGGAGGAACCCTaGCCTCAGCACAGACCTCAG +
Preference number: 2 (lower is better)
Translates to: ERQHCCGTKHSEPLYPLGGLEEP*PQHRPQ
Trigger: CTGAGGTCTGTGCTGAGGCCAGGGTTCCTCCAAGCC...TCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCAGTGCTGACGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAGATGATCAGCCTGCTGCTGCTCCTGGAGAGACTTGGTTaGGGCAGCCTTCGGGAAGTC +
Preference number: 2 (lower is better)
Translates to: VSRAWRLLFFQMISLLLLLERLG*GSLREV
Trigger: GACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAG...GAGCAGCAGCAGGCTGATCATCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACCAGCTCTCCAGGATTTaGGGCCGGGCTACAGCAGTC +
Preference number: 2 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNQLSRI*GRATAV
Trigger: GACTGCTGTAGCCCGGCCCCAAATCCTGGAGAGCTG...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp ACTCACCTAAGAAACAGCAATGCCCAGGGCGCCCACAGGCACCTCGGTCGTCTGGTCCTGGCTGTTCAATaGATGGCCTCTGTGGGGCAA +
Preference number: 2 (lower is better)
Translates to: THLRNSNAQGAHRHLGRLVLAVQ*MASVGQ
Trigger: TTGCCCCACAGAGGCCATTCATTGAACAGCCAGGAC...CAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAGGTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp TTCTCCTTCAGCCAGGCAGGAGGGATGCCCACAGGAGGTAGATCTTGGATGGCTGCTATCCCTACCACCTaGCCACCAACCAGGACCAGC +
Preference number: 2 (lower is better)
Translates to: FSFSQAGGMPTGGRSWMAAIPTT*PPTRTS
Trigger: GCTGGTCCTGGTTGGTGGTCAGGTGGTAGGGATAGC...AGCCATCCAAGATCTACCTCCTGTGGGCATCCCTCCTGCCTGGCTGAAGGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR TCA 90 bp GAAAGAGGGCCTGGGTGTGAAGGCTGCTCTGTGACCTGGCATGTGGCCTCCTCAGGCACCTGTGCATCCTaGATGATGATGGCCACCAAG +
Preference number: 2 (lower is better)
Translates to: ERGPGCEGCSVTWHVASSGTCAS*MMMATK
Trigger: CTTGGTGGCCATCATCATTCAGGATGCACAGGTGCC...TGAGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp GGTGGGTCTGAGTTCAGAGGACTGGGTGACAGCTCCGTGTCTAGTCCGAAAGTAGGTGGAGCCAGCAGCTaGCCCATGCTGCAGGACACT +
Preference number: 2 (lower is better)
Translates to: GGSEFRGLGDSSVSSPKVGGASS*PMLQDT
Trigger: AGTGTCCTGCAGCATGGGGCAGCTGCTGGCTCCACC...TACTTTCGGACTAGACACGGAGCTGTCACCCAGTCCTCTGAACTCAGACCCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACAGTACTTCCCTGGCTTaGAGGAACCCTGGCCTCAGC +
Preference number: 2 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNSTSLA*RNPGLS
Trigger: GCTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACT...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp AGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCCTCTCTCAAGACTGCCAGTTATCGTaGCCGCTGGGCCCTGCCACC +
Preference number: 2 (lower is better)
Translates to: SPGCSMNGLCGAIPVLSQDCQLS*PLGPAT
Trigger: GGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTC...TTGAGAGAGGACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCGGCCCAGCTTCCAGCTaGGAGCGTCCAGCAGCTATG +
Preference number: 2 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVGPASS*ERPAAM
Trigger: CATAGCTGCTGGACGCTCCCAGCTGGAAGCTGGGCC...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCATGTGGCCTCCTCACTaGGCCCCATGGGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: KFVSLLLSTTERRTAGSAMWPPH*APWGGR
Trigger: CCTGCCTCCCCATGGGGCCCAGTGAGGAGGCCACAT...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CAA 90 bp GCTGTATCAGGGGCAGCTGGAAGTCCATCTCCTGCGTTTCTGCTTTaGACACGCCAGCTACACTGCTCCAGGATTCCCGTGAGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: AVSGAAGSPSPAFLL*TRQLHCSRIPVSSP
Trigger: AGGAGAGCTCACGGGAATCCTGGAGCAGTGTAGCTGGCGTGTCAAAAGCAGAAACGCAGGAGATGGACTTCCAGCTGCCCCTGATACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACTTCTCTCTGATGCTGTaGCCACACCAGATCCCTGTG +
Preference number: 2 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNFSLML*PHQIPV
Trigger: CACAGGGATCTGGTGTGGTCACAGCATCAGAGAGAA...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR TCA 90 bp AGTACACAATACCAAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGATCTGCCCAGTCACCTCCTTTaGGCCCCAGCTCCAGACCAA +
Preference number: 2 (lower is better)
Translates to: STQYQSPGHPQRAWAPDLPSHLL*APAPDQ
Trigger: TTGGTCTGGAGCTGGGGCTCAAAGGAGGTGACTGGG...CAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTTGGTATTGTGTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACTCTTGGGTGCTGACATaGGGTTGGCTTCTGGTGGTA +
Preference number: 2 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNSWVLT*GWLLVV
Trigger: TACCACCAGAAGCCAACCTCATGTCAGCACCCAAGA...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp GGCAGAATACCAGTATCCAACTGCACACCAGTCCCCATCATGCCAGGACCCTTCGGCCTCCCATGCCACTaGCAGGCCATCTGTGAGTTT +
Preference number: 2 (lower is better)
Translates to: GRIPVSNCTPVPIMPGPFGLPCH*QAICEF
Trigger: AAACTCACAGATGGCCTGGCAGTGGCATGGGAGGCC...GAAGGGTCCTGGCATGATGGGGACTGGTGTGCAGTTGGATACTGGTATTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR GCA 90 bp GGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTGACTTTGGGCAATCATGGCCACCAAGGGACTaGGTGCTGGGGTGGGAATCT +
Preference number: 2 (lower is better)
Translates to: GALASGHMWVTGSDFGQSWPPRD*VLGWES
Trigger: AGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCA...TGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp TCCGTTTCCTCTCCTCCCCTGCTTAGGGGCTGTGGTAAGACTGCTCTGGGAAGCCATTCTCTGGATTTCTaGGAAACCTGCCAGCTGGGC +
Preference number: 2 (lower is better)
Translates to: SVSSPPLLRGCGKTALGSHSLDF*ETCQLG
Trigger: GCCCAGCTGGCAGGTTTCCCAGAAATCCAGAGAATG...GCTTCCCAGAGCAGTCTTACCACAGCCCCTAAGCAGGGGAGGAGAGGAAACGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR CCA 90 bp ACTCACCTAAGAAACAGCAATGCCCAGGGCGCCCACAGGCACCTCGGTCGTCTGTGGCTGTTCAATGAATaGCCTCTGTGGGGCAATACC +
Preference number: 2 (lower is better)
Translates to: THLRNSNAQGAHRHLGRLWLFNE*PLWGNT
Trigger: GGTATTGCCCCACAGAGGCCATTCATTGAACAGCCA...CAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAGGTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CAA 90 bp ACCTCCATGGGACACCAGCCTGCCTTTCCAGGACTCTGGAGAGACTaGGTTGGGGCAGCCTTCGGGAAGTCTGTCTTCTTCTTTACTCTG +
Preference number: 2 (lower is better)
Translates to: TSMGHQPAFPGLWRD*VGAAFGKSVFFFTL
Trigger: CAGAGTAAAGAAGAAGACAGACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCCTGCCAGGCCATCTGTaGGTTTCTAGGCCCAGCTTC +
Preference number: 2 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVLPGHL*VSRPSF
Trigger: GAAGCTGGGCCTAGAAACTCACAGATGGCCTGGCAG...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp CCACCCGGCAACTGTGTTTGTTTATCTTCCACATCCCAGGAGCCCTGGCTTCTGGTCCTGGCTGTTCAATaGATGGCCTCTGTGGGGCAA +
Preference number: 2 (lower is better)
Translates to: PPGNCVCLSSTSQEPWLLVLAVQ*MASVGQ
Trigger: TTGCCCCACAGAGGCCATTCATTGAACAGCCAGGAC...CAGAAGCCAGGGCTCCTGGGATGTGGAAGATAAACAAACACAGTTGCCGGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp GACATGAGGTTGGCTTCTGGTGGTATTCCCTCAGGACAGCTTTCCAAGGCCCCCTCCGCTGTTCTCAGGTaGCATGCTCAGGTCCTCTTT +
Preference number: 2 (lower is better)
Translates to: DMRLASGGIPSGQLSKAPSAVLR*HAQVLF
Trigger: AAAGAGGACCTGAGCATGTCACCTGAGAACAGCGGA...GGGGGCCTTGGAAAGCTGTCCTGAGGGAATACCACCAGAAGCCAACCTCATGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCGGCCTCCCATGCCACTaGCAGGCCATCTGTGAGTTT +
Preference number: 2 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVGLPCH*QAICEF
Trigger: AAACTCACAGATGGCCTGGCAGTGGCATGGGAGGCC...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GAGGCAGAACTAAGGCAGAATACCAGTATCCAACTGCACACCAGTCCCCATCATAGCCCCTGTATCCCTTaGGAGGGAGGAGAGCCCAGG +
Preference number: 2 (lower is better)
Translates to: EAELRQNTSIQLHTSPHHSPCIP*EGGEPR
Trigger: CCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCT...ATGATGGGGACTGGTGTGCAGTTGGATACTGGTATTCTGCCTTAGTTCTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR CCA 90 bp TGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTCTAGTCGACTGCGTGCTGGGGTaGGAATCTGGTCCCACCATA +
Preference number: 2 (lower is better)
Translates to: CPCCFLQLSGGQQALPLVDCVLG*ESGPTI
Trigger: TATGGTGGGACCAGATTCCCACCCCAGCACGCAGTC...GACTAGAGGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AGTACACAATACCAAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGATCTGAGCCTGCTGCTGCTCTaGAGCCAGCTCTCCAGGATT +
Preference number: 2 (lower is better)
Translates to: STQYQSPGHPQRAWAPDLSLLLL*SQLSRI
Trigger: AATCCTGGAGAGCTGGCTCCAGAGCAGCAGCAGGCT...CAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTTGGTATTGTGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp ACAGCTCTGCCCCATTCCCAAGTCATTCCCTTAAACCAACTGCTGGGGCCTTGTGTTGCTTTCTACAACTaGGCGGAGGACAGCAGGCTC +
Preference number: 2 (lower is better)
Translates to: TALPHSQVIPLNQLLGPCVAFYN*AEDSRL
Trigger: GAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAAC...ACAAGGCCCCAGCAGTTGGTTTAAGGGAATGACTTGGGAATGGGGCAGAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR GCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCCCTGGGTGTGAAGGCTaGTCTGTGACCTGGCATGTG +
Preference number: 2 (lower is better)
Translates to: KFVSLLLSTTERRTAGSAPGCEG*SVTWHV
Trigger: CACATGCCAGGTCACAGAGCAGCCTTCACACCCAGG...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp GTAGGTAGGACAACATCAGCTAGGAAAGCCCAGGACTTAGGAACGTCAGCACTGAGTACTTCCCTGGCTTaGAGGAACCCTGGCCTCAGC +
Preference number: 2 (lower is better)
Translates to: VGRTTSARKAQDLGTSALSTSLA*RNPGLS
Trigger: GCTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACT...CAGTGCTGACGTTCCTAAGTCCTGGGCTTTCCTAGCTGATGTTGTCCTACCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCGCCTTTCCAGGACTCTaGAGAGACTTGGTTGGGGCA +
Preference number: 2 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVAFPGL*RDLVGA
Trigger: TGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGC...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCCTCTCTCAACATCCCCAAAGGGCTTaGGCACCTGATCTGCAGGAG +
Preference number: 2 (lower is better)
Translates to: SPGCSMNGLCGAIPVLSQHPQRA*APDLQE
Trigger: CTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATG...TTGAGAGAGGACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCCCTTCCTCCTGGCTGTaGTGTTGCTTCAGGTGGCCA +
Preference number: 2 (lower is better)
Translates to: KFVSLLLSTTERRTAGSAPSSWL*CCFRWP
Trigger: TGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGG...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCAGAGTAGGTGCACTCTaGGCTGGGCTGCCTGAAAGA +
Preference number: 2 (lower is better)
Translates to: KFVSLLLSTTERRTAGSARVGAL*AGLPER
Trigger: TCTTTCAGGCAGCCCAGCCCAGAGTGCACCTACTCT...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CAA 90 bp GGTCAGAGCTTGAAGGTCAAGTGCCGGACTGGGAAGCTGCGTTTATaGAACAGGATCTCACTGTCAAAGCCTAGGCTAGCCTCAAACTCC +
Preference number: 2 (lower is better)
Translates to: GQSLKVKCRTGKLRL*NRISLSKPRLASNS
Trigger: GGAGTTTGAGGCTAGCCTAGGCTTTGACAGTGAGATCCTGTTCAATAAACGCAGCTTCCCAGTCCGGCACTTGACCTTCAAGCTCTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR TCA 90 bp CCACCCGGCAACTGTGTTTGTTTATCTTCCACATCCCAGGAGCCCTGGCTTCTGGTGGGTAACTGGCAGTaGCTTTGGGCAATCAAGTTT +
Preference number: 2 (lower is better)
Translates to: PPGNCVCLSSTSQEPWLLVGNWQ*LWAIKF
Trigger: AAACTTGATTGCCCAAAGTCACTGCCAGTTACCCAC...CAGAAGCCAGGGCTCCTGGGATGTGGAAGATAAACAAACACAGTTGCCGGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR TCA 90 bp TCCGTTTCCTCTCCTCCCCTGCTTAGGGGCTGTGGTAAGACTGCTCTGGGAAGCCTGATGTCAATGCCTTaGCACATTCAACAACACTTA +
Preference number: 2 (lower is better)
Translates to: SVSSPPLLRGCGKTALGSLMSMP*HIQQHL
Trigger: TAAGTGTTGTTGAATGTGTCAAGGCATTGACATCAG...GCTTCCCAGAGCAGTCTTACCACAGCCCCTAAGCAGGGGAGGAGAGGAAACGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR GCA 90 bp GGAAGTTCTAAAGGCACAGCGGGAAGAATTTCCTGGGACAGTCAGTTCATTCCTACATTTCAGCTTTCGTaGACTGTGGGCTCGGCGTGT +
Preference number: 2 (lower is better)
Translates to: GSSKGTAGRISWDSQFIPTFQLS*TVGSAC
Trigger: ACACGCCGAGCCCACAGTGCACGAAAGCTGAAATGT...AGGAATGAACTGACTGTCCCAGGAAATTCTTCCCGCTGTGCCTTTAGAACTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR CCA 90 bp GGAAGTTCTAAAGGCACAGCGGGAAGAATTTCCTGGGACAGTCAGTTCATTCCTGTGGTAAGACTGCTCTaGGAAGCTGGGTGTAGTAGC +
Preference number: 2 (lower is better)
Translates to: GSSKGTAGRISWDSQFIPVVRLL*EAGCSS
Trigger: GCTACTACACCCAGCTTCCCAGAGCAGTCTTACCAC...AGGAATGAACTGACTGTCCCAGGAAATTCTTCCCGCTGTGCCTTTAGAACTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR CCA 90 bp AGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCCTCTCTCAAATCTTAGCAGCTTCCTaGGTTGGAAATGATGGGAGC +
Preference number: 2 (lower is better)
Translates to: SPGCSMNGLCGAIPVLSQILAAS*VGNDGS
Trigger: GCTCCCATCATTTCCAACCCAGGAAGCTGCTAAGAT...TTGAGAGAGGACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 90 bp TCTGTCTTCTTCTTTACTCTGTGCTTCAGCAAGCAAGGCAGCAGCTaGTCTAGACAAGTTTTCCAGTGCGGGTACTTGGTTGACTCCTGG +
Preference number: 2 (lower is better)
Translates to: SVFFFTLCFSKQGSS*SRQVFQCGYLVDSW
Trigger: CCAGGAGTCAACCAAGTACCCGCACTGGAAAACTTGTCTAGACAAGCTGCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAAGAAGACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR GCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTTCTTCTTTACTCTGTaGTTCAGCAAGCAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: KFVSLLLSTTERRTAGSAFFFTL*FSKQGS
Trigger: GCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAAGAA...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCCTCTCTCAACAATTCACCATTCTCTaGATTTCTGGGAAACCTGCC +
Preference number: 2 (lower is better)
Translates to: SPGCSMNGLCGAIPVLSQQFTIL*ISGKPA
Trigger: GGCAGGTTTCCCAGAAATCCAGAGAATGGTGAATTG...TTGAGAGAGGACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CCA 90 bp AGGATGAGAGATGGAGTAGCCACAGCTCTGCCCCATTCCCAAGTCATTCCCTTAGCTTCTGGTCATATGTaGGTAACTGGCAGTGACTTT +
Preference number: 2 (lower is better)
Translates to: RMRDGVATALPHSQVIPLASGHM*VTGSDF
Trigger: AAAGTCACTGCCAGTTACCCACATATGACCAGAAGC...TAAGGGAATGACTTGGGAATGGGGCAGAGCTGTGGCTACTCCATCTCTCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR GCA 90 bp GGAAGTTCTAAAGGCACAGCGGGAAGAATTTCCTGGGACAGTCAGTTCATTCCTACACCTCTAGCACTCTaGCTAAAGGAGAGGGAAAGA +
Preference number: 2 (lower is better)
Translates to: GSSKGTAGRISWDSQFIPTPLAL*LKERER
Trigger: TCTTTCCCTCTCCTTTAGGCAGAGTGCTAGAGGTGT...AGGAATGAACTGACTGTCCCAGGAAATTCTTCCCGCTGTGCCTTTAGAACTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CCA 72 bp TGCCCAGGGCGCCCACAGGCACCTCGGTCGTCTGGCTaGGAACAGGAGAGTGACCAGGGCCCTTGCCCTCCC +
Preference number: 3 (lower is better)
Translates to: CPGRPQAPRSSG*EQESDQGPCPP
Trigger: GGGAGGGCAAGGGCCCTGGTCACTCTCCTGTTCCCAGCCAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 72 bp AGGCACCCCAGGATCCTGGGCGGCACCCTGCTTCACTaGCTGCACAAACTCCTGGTAGCCACCGGCAGGGGC +
Preference number: 3 (lower is better)
Translates to: RHPRILGGTLLH*LHKLLVATGRG
Trigger: GCCCCTGCCGGTGGCTACCAGGAGTTTGTGCAGGCAGTGAAGCAGGGTGCCGCCCAGGATCCTGGGGTGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp TGCCTGCACAAACTCCTGGTAGCCACCGGCAGGGGCTaGGGTGGAGCCAGCAGCTGCCCCATGCTGCAGGAC +
Preference number: 3 (lower is better)
Translates to: CLHKLLVATGRG*GGASSCPMLQD
Trigger: GTCCTGCAGCATGGGGCAGCTGCTGGCTCCACCCCAGCCCCTGCCGGTGGCTACCAGGAGTTTGTGCAGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 72 bp ACCAGCCCCACAGTTCCCTCGAGGTATCGCCTTGACTaGCAGTTATCGTGCCCGCTGGGCCCTGCCACCCGG +
Preference number: 3 (lower is better)
Translates to: TSPTVPSRYRLD*QLSCPLGPATR
Trigger: CCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR TCA 72 bp CAGGACCAGCCCCACAGTTCCCTCGAGGTATCGCCTTaGCTGCCAGTTATCGTGCCCGCTGGGCCCTGCCAC +
Preference number: 3 (lower is better)
Translates to: QDQPHSSLEVSP*LPVIVPAGPCH
Trigger: GTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCTGGTCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR TCA 72 bp TCGAGAAGGCCTTGTAACCGGGGTCTCCAGAAGGCCTaGCACCAGGCACCCCAGGATCCTGGGCGGCACCCT +
Preference number: 3 (lower is better)
Translates to: SRRPCNRGLQKA*HQAPQDPGRHP
Trigger: AGGGTGCCGCCCAGGATCCTGGGGTGCCTGGTGTCAGGCCTTCTGGAGACCCCGGTTACAAGGCCTTCTCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp CCGCTGCTGCTGTGTCCCCGCGGATGCCATTGCTGCTaGGCAGGCTCGAGAAGGCCTTGTAACCGGGGTCTC +
Preference number: 3 (lower is better)
Translates to: PLLLCPRGCHCC*AGSRRPCNRGL
Trigger: GAGACCCCGGTTACAAGGCCTTCTCGAGCCTGCTCAGCAGCAATGGCATCCGCGGGGACACAGCAGCAGCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGCCCCTGTATCCCTaGGGAGGGAGGAGAGCCCAG +
Preference number: 3 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEEPLYP*GGRRAQ
Trigger: CTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTC...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp AAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGATCTGCAGGAGGAGGGGCGGGGGTCAGCCGGGCTaGGAGGCTCCTCTTCTTCCA +
Preference number: 3 (lower is better)
Translates to: KAQVIPKGLGHLICRRRGGGQPG*EAPLLP
Trigger: TGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCC...GCCCCTCCTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp TGCCTGAAAGAGGGCCTGGGTGTGAAGGCTGCTCTGTaGCCTGGCATGTGGCCTCCTCACTGGGCCCCATGG +
Preference number: 3 (lower is better)
Translates to: CLKEGLGVKAAL*PGMWPPHWAPW
Trigger: CCATGGGGCCCAGTGAGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTTTCAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp GCTTTCCAAGGCCCCCGAGAGGCTCCCCAGGGATGGTaGTCTGTCATCGTAGCAGCAGCCACAGCCAGGGCT +
Preference number: 3 (lower is better)
Translates to: AFQGPREAPQGW*SVIVAAATARA
Trigger: AGCCCTGGCTGTGGCTGCTGCTACGATGACAGATCACCATCCCTGGGGAGCCTCTCGGGGGCCTTGGAAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp TCTCCAGAAGGCCTGACACCAGGCACCCCAGGATCCTaGGCGGCACCCTGCTTCACTGCCTGCACAAACTCC +
Preference number: 3 (lower is better)
Translates to: SPEGLTPGTPGS*AAPCFTACTNS
Trigger: GGAGTTTGTGCAGGCAGTGAAGCAGGGTGCCGCCCAGGATCCTGGGGTGCCTGGTGTCAGGCCTTCTGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp CAGCAGCCACAGCCAGGGCTAGCAACGATGGGGCTCTaGCCACCTTCCTCCTGGCTGTGGTGTTGCTTCAGG +
Preference number: 3 (lower is better)
Translates to: QQPQPGLATMGL*PPSSWLWCCFR
Trigger: CCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGCTAGCCCTGGCTGTGGCTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp GCTCCCAGCTCTCCACTGGCTGCATTGGTGGCCCTGAAGAATGGGGGTCAGCCGTCTGGAGAGACTTGGTaGGGGCAGCCTTCGGGAAGT +
Preference number: 3 (lower is better)
Translates to: APSSPLAALVALKNGGQPSGETW*GQPSGS
Trigger: ACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAGA...CGGCTGACCCCCATTCTTCAGGGCCACCAATGCAGCCAGTGGAGAGCTGGGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp GGGTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAGATaGTCAGCCTGCTGCTGCTCTGGAGCCAGCTCTCCA +
Preference number: 3 (lower is better)
Translates to: GSAGLGGSSSSR*SACCCSGASSP
Trigger: TGGAGAGCTGGCTCCAGAGCAGCAGCAGGCTGATCATCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp CCAAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTaGTCTGCAGGAGGAGGGGCCTTCACCCAGTCACCT +
Preference number: 3 (lower is better)
Translates to: PKPRSSPKGLGT*SAGGGAFTQSP
Trigger: AGGTGACTGGGTGAAGGCCCCTCCTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 72 bp GTTCCCTCGAGGTATCGCCTTGACTGCCAGTTATCGTaGCCGCTGGGCCCTGCCACCCGGCAACTGTGTTTG +
Preference number: 3 (lower is better)
Translates to: VPSRYRLDCQLS*PLGPATRQLCL
Trigger: CAAACACAGTTGCCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR GCA 72 bp GCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGATCTaGAGGAGGAGGGGCCTTCACCCAGTCACCTCCTTT +
Preference number: 3 (lower is better)
Translates to: AQVIPKGLGHLI*RRRGLHPVTSF
Trigger: AAAGGAGGTGACTGGGTGAAGGCCCCTCCTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp GGGCTAGCAACGATGGGGCTCTGGCCACCTTCCTCCTaGCTGTGGTGTTGCTTCAGGTGGCCACACAAGTGG +
Preference number: 3 (lower is better)
Translates to: GLATMGLWPPSS*LWCCFRWPHKW
Trigger: CCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGCTAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp CAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTaGAGGAACCCTGGCCTCAGCACAGACCTCAGCAAC +
Preference number: 3 (lower is better)
Translates to: QLGCLPGSTSLA*RNPGLSTDLSN
Trigger: GTTGCTGAGGTCTGTGCTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 72 bp AGCCAGGCAGGAGGGATGCCCACAGGAGGTAGATCTTaGATGGCTCCGTTTCCTCTCCTCCCCTGCTTAGGG +
Preference number: 3 (lower is better)
Translates to: SQAGGMPTGGRS*MAPFPLLPCLG
Trigger: CCCTAAGCAGGGGAGGAGAGGAAACGGAGCCATCCAAGATCTACCTCCTGTGGGCATCCCTCCTGCCTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CCA 72 bp CAACGGGATGCAGAGGCAGGAGATGGTGACCCCCAGTaGAAGGCGCTGTATCAGGGGCAGCTGGAAGTCCAT +
Preference number: 3 (lower is better)
Translates to: QRDAEAGDGDPQ*KALYQGQLEVH
Trigger: ATGGACTTCCAGCTGCCCCTGATACAGCGCCTTCCACTGGGGGTCACCATCTCCTGCCTCTGCATCCCGTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp GAAGGCAGAGGGGAGCATGACTCTGCCAAGGCTGACTaGCCAAGGCCCCCATTCTCAGCCTCCAACAAGTCG +
Preference number: 3 (lower is better)
Translates to: EGRGEHDSAKAD*PRPPFSASNKS
Trigger: CGACTTGTTGGAGGCTGAGAATGGGGGCCTTGGCCAGTCAGCCTTGGCAGAGTCATGCTCCCCTCTGCCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp GCAACGATGGGGCTCTGGCCACCTTCCTCCTGGCTGTaGTGTTGCTTCAGGTGGCCACACAAGTGGCAAGTG +
Preference number: 3 (lower is better)
Translates to: ATMGLWPPSSWL*CCFRWPHKWQV
Trigger: CACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp TTAGGAACGTCAGCACTGCTGTGGGACCAAGCACAGTaGGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCA +
Preference number: 3 (lower is better)
Translates to: LGTSALLWDQAQ*APVSLGREESP
Trigger: TGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCAGTGCTGACGTTCCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR GCA 72 bp CAACAACAGCACACTCACTCACCTAAGAAACAGCAATaGCCAGGGCGCCCACAGGCACCTCGGTCGTCTGGC +
Preference number: 3 (lower is better)
Translates to: QQQHTHSPKKQQ*PGRPQAPRSSG
Trigger: GCCAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAGGTGAGTGAGTGTGCTGTTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp ACCTCCATGGGACACCAGCCTGCCTTTCCAGGACTCTaGAGAGACTTGGTTGGGGCAGCCTTCGGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: TSMGHQPAFPGL*RDLVGAAFGKS
Trigger: AGACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATGGAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp AACAGGTTCTCAGTGAGCCGAGCCATGATGTCTGCCTaGCTCTCCTGGAAGCCGCAGCCTCCGCTGTTCTCA +
Preference number: 3 (lower is better)
Translates to: NRFSVSRAMMSA*LSWKPQPPLFS
Trigger: TGAGAACAGCGGAGGCTGCGGCTTCCAGGAGAGCCAGGCAGACATCATGGCTCGGCTCACTGAGAACCTGTT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp CACATTCTGTACTGGGGCCTCAAACAGCTCCATACAGCGCACCACACTGACACTGAGCCCCTGTATCCCTaGGGAGGGAGGAGAGCCCAG +
Preference number: 3 (lower is better)
Translates to: HILYWGLKQLHTAHHTDTEPLYP*GGRRAQ
Trigger: CTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTC...AGTGTCAGTGTGGTGCGCTGTATGGAGCTGTTTGAGGCCCCAGTACAGAATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 72 bp CTGCGTGCTAAGGAGCATCCAACACCTCTAGCACTCTaGCTAAAGGAGAGGGAAAGAGGAGGACCCCTCCCC +
Preference number: 3 (lower is better)
Translates to: LRAKEHPTPLAL*LKERERGGPLP
Trigger: GGGGAGGGGTCCTCCTCTTTCCCTCTCCTTTAGGCAGAGTGCTAGAGGTGTTGGATGCTCCTTAGCACGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CCA 72 bp TGGCCACCTTCCTCCTGGCTGTGGTGTTGCTTCAGGTaGCCACACAAGTGGCAAGTGAGGGACGAGTACACA +
Preference number: 3 (lower is better)
Translates to: WPPSSWLWCCFR*PHKWQVRDEYT
Trigger: TGTGTACTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp CCACCCGGCAACTGTGTTTGTTTATCTTCCACATCCCAGGAGCCCTGGCTTCTGGGACCGCTGAGAGCCTaGAGTGACAGGTCTATTCGG +
Preference number: 3 (lower is better)
Translates to: PPGNCVCLSSTSQEPWLLGPLRA*SDRSIR
Trigger: CCGAATAGACCTGTCACTCAAGGCTCTCAGCGGTCC...CAGAAGCCAGGGCTCCTGGGATGTGGAAGATAAACAAACACAGTTGCCGGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR TCA 72 bp CAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATaGATGGCCTCTGTGGGGCAATACCTGTCCTCTCTC +
Preference number: 3 (lower is better)
Translates to: QALPLVPVLAVQ*MASVGQYLSSL
Trigger: GAGAGAGGACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR TCA 72 bp GCACACCAGTCCCCATCATGCCAGGACCCTTCTCTCTaGTGCTGTGACCACACCAGATCCCTGTGCCTCAAA +
Preference number: 3 (lower is better)
Translates to: AHQSPSCQDPSL*CCDHTRSLCLK
Trigger: TTTGAGGCACAGGGATCTGGTGTGGTCACAGCATCAGAGAGAAGGGTCCTGGCATGATGGGGACTGGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 72 bp GGTAGATCTTGGATGGCTCCGTTTCCTCTCCTCCCCTaGTTAGGGGCTGTGGTAAGACTGCTCTGGGAAGCT +
Preference number: 3 (lower is better)
Translates to: GRSWMAPFPLLP*LGAVVRLLWEA
Trigger: AGCTTCCCAGAGCAGTCTTACCACAGCCCCTAAGCAGGGGAGGAGAGGAAACGGAGCCATCCAAGATCTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 72 bp AGGCGCTGTATCAGGGGCAGCTGGAAGTCCATCTCCTaGGTTTCTGCTTTTGACACGCCAGCTACACTGCTC +
Preference number: 3 (lower is better)
Translates to: RRCIRGSWKSIS*VSAFDTPATLL
Trigger: GAGCAGTGTAGCTGGCGTGTCAAAAGCAGAAACGCAGGAGATGGACTTCCAGCTGCCCCTGATACAGCGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp TCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACCCTaGCCTCAGCACAGACCTCAGCAACAACAGCACACT +
Preference number: 3 (lower is better)
Translates to: SPRKYFPGLEEP*PQHRPQQQQHT
Trigger: AGTGTGCTGTTGTTGCTGAGGTCTGTGCTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 72 bp GACACCAGCCTGCCTTTCCAGGACTCTGGAGAGACTTaGTTGGGGCAGCCTTCGGGAAGTCTGTCTTCTTCT +
Preference number: 3 (lower is better)
Translates to: DTSLPFQDSGET*LGQPSGSLSSS
Trigger: AGAAGAAGACAGACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGCAGGCTGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp GTCCCCATCATGCCAGGACCCTTCTCTCTGATGCTGTaGCCACACCAGATCCCTGTGCCTCAAACTTCAGAC +
Preference number: 3 (lower is better)
Translates to: VPIMPGPFSLML*PHQIPVPQTSD
Trigger: GTCTGAAGTTTGAGGCACAGGGATCTGGTGTGGTCACAGCATCAGAGAGAAGGGTCCTGGCATGATGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 72 bp GCTCTCCTGGAAGCCGCAGCCTCCGCTGTTCTCAGGTaGCATGCTCAGGTCCTCTTTGACTATCTCATCTTC +
Preference number: 3 (lower is better)
Translates to: ALLEAAASAVLR*HAQVLFDYLIF
Trigger: GAAGATGAGATAGTCAAAGAGGACCTGAGCATGTCACCTGAGAACAGCGGAGGCTGCGGCTTCCAGGAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp CCCCTGACAAGTTTGAGGGTGTCTTGGGTGCTGACATaGGGTTGGCTTCTGGTGGTATTCCCTCAGGACAGC +
Preference number: 3 (lower is better)
Translates to: PLTSLRVSWVLT*GWLLVVFPQDS
Trigger: GCTGTCCTGAGGGAATACCACCAGAAGCCAACCTCATGTCAGCACCCAAGACACCCTCAAACTTGTCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp AGACAAGTTTTCCAGTGCGGGTACTTGGTTGACTCCTaGCTTCGGGTCTGCTTATCCCAGAGGGGCACCTGT +
Preference number: 3 (lower is better)
Translates to: RQVFQCGYLVDS*LRVCLSQRGTC
Trigger: ACAGGTGCCCCTCTGGGATAAGCAGACCCGAAGCCAGGAGTCAACCAAGTACCCGCACTGGAAAACTTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp AAAACTCCGGTAGGCAGGATTGTCTGCAAGGACAAGTaGGACCTGCGTGCAAGCCAGAGTAGGTGCACTCTG +
Preference number: 3 (lower is better)
Translates to: KTPVGRIVCKDK*DLRASQSRCTL
Trigger: CAGAGTGCACCTACTCTGGCTTGCACGCAGGTCCCACTTGTCCTTGCAGACAATCCTGCCTACCGGAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp ACTCACCTAAGAAACAGCAATGCCCAGGGCGCCCACAGGCACCTCGGTCGTCTGATGCTCAGGTCCTCTTaGACTATCTCATCTTCTTCC +
Preference number: 3 (lower is better)
Translates to: THLRNSNAQGAHRHLGRLMLRSS*TISSSS
Trigger: GGAAGAAGATGAGATAGTCAAAGAGGACCTGAGCAT...CAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAGGTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR-3UTR CAA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTCTCCACTGGCTGCATaGGTGGCCCTGAAGAATGGG +
Preference number: 3 (lower is better)
Translates to: KFVSLLLSTTERRTAGSASPLAA*VALKNG
Trigger: CCCATTCTTCAGGGCCACCAATGCAGCCAGTGGAGA...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp TCCTGGGTTGGAAATGATGGGAGCGGGTATAAGCAGTaGAAGGGGGTGGAAGGTGGAGGACCAGTGAAGAAA +
Preference number: 3 (lower is better)
Translates to: SWVGNDGSGYKQ*KGVEGGGPVKK
Trigger: TTTCTTCACTGGTCCTCCACCTTCCACCCCCTTCCACTGCTTATACCCGCTCCCATCATTTCCAACCCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR-3UTR CAA 90 bp GGTGGCCCTGAAGAATGGGGGTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAGAATCAAGTTTGTGTCCTaGTTGCTTTCTACAACTGAG +
Preference number: 3 (lower is better)
Translates to: GGPEEWGSAGLGGSSSSRIKFVS*LLSTTE
Trigger: CTCAGTTGTAGAAAGCAACAAGGACACAAACTTGAT...TCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp ATAAGCAGTGGAAGGGGGTGGAAGGTGGAGGACCAGTaGAGAAATCCTGGGCTAATCCAGAGGTCAGAGCTT +
Preference number: 3 (lower is better)
Translates to: ISSGRGWKVEDQ*RNPGLIQRSEL
Trigger: AAGCTCTGACCTCTGGATTAGCCCAGGATTTCTTCACTGGTCCTCCACCTTCCACCCCCTTCCACTGCTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 72 bp TGTGGTGTTGCTTCAGGTGGCCACACAAGTGGCAAGTaGGGGACGAGTACACAATACCAAAGCCCAGGTCAT +
Preference number: 3 (lower is better)
Translates to: CGVASGGHTSGK*GTSTQYQSPGH
Trigger: ATGACCTGGGCTTTGGTATTGTGTACTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR GCA 72 bp CCAGAACACAGTCAGACTCACTCACTCACCAAAGTCTaGCATCTGCTATCCCTACCACCTGACCACCAACCA +
Preference number: 3 (lower is better)
Translates to: PEHSQTHSLTKV*HLLSLPPDHQP
Trigger: TGGTTGGTGGTCAGGTGGTAGGGATAGCAGATGGCAGACTTTGGTGAGTGAGTGAGTCTGACTGTGTTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 72 bp GTCTTTCCTTCTGAACATCATATTCAAGTTCTCTGCTaGCCTGGCAGGTTGCCACACCCCAAATCCCCTGCC +
Preference number: 3 (lower is better)
Translates to: VFPSEHHIQVLC*PGRLPHPKSPA
Trigger: GGCAGGGGATTTGGGGTGTGGCAACCTGCCAGGCCAGCAGAGAACTTGAATATGATGTTCAGAAGGAAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CCA 72 bp ATGGCCACCAAGGGACTGCGTGCTGGGGTGGGAATCTaGTCCCACCATATCTTCTTAATCTTGGTAATGCTG +
Preference number: 3 (lower is better)
Translates to: MATKGLRAGVGI*SHHIFLILVML
Trigger: CAGCATTACCAAGATTAAGAAGATATGGTGGGACCAGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp GCAGCTTGTCTAGACAAGTTTTCCAGTGCGGGTACTTaGTTGACTCCTGGCTTCGGGTCTGCTTATCCCAGA +
Preference number: 3 (lower is better)
Translates to: AACLDKFSSAGT*LTPGFGSAYPR
Trigger: TCTGGGATAAGCAGACCCGAAGCCAGGAGTCAACCAAGTACCCGCACTGGAAAACTTGTCTAGACAAGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp GGCTGTCAGCCACTGTTAAAGACAGGCACCACCAGCTaGAGGGAGGTACTTTACAGAGGAAGTTCTAAAGGC +
Preference number: 3 (lower is better)
Translates to: GCQPLLKTGTTS*REVLYRGSSKG
Trigger: GCCTTTAGAACTTCCTCTGTAAAGTACCTCCCTTCAGCTGGTGGTGCCTGTCTTTAACAGTGGCTGACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 72 bp GTGAAGAAATCCTGGGCTAATCCAGAGGTCAGAGCTTaGAGGTCAAGTGCCGGACTGGGAAGCTGCGTTTAT +
Preference number: 3 (lower is better)
Translates to: VKKSWANPEVRA*RSSAGLGSCVY
Trigger: ATAAACGCAGCTTCCCAGTCCGGCACTTGACCTTCAAGCTCTGACCTCTGGATTAGCCCAGGATTTCTTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 72 bp GGCAGTGACTTTGGGCAATCAAGTTTGTGTCCTTGTTaGTTTCTACAACTGAGCGGAGGACAGCAGGCTCTG +
Preference number: 3 (lower is better)
Translates to: GSDFGQSSLCPC*FLQLSGGQQAL
Trigger: CAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTTGATTGCCCAAAGTCACTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CCA 72 bp ATCCTGAATGATGATGGCCACCAAGGGACTGCGTGCTaGGGTGGGAATCTGGTCCCACCATATCTTCTTAAT +
Preference number: 3 (lower is better)
Translates to: ILNDDGHQGTAC*GGNLVPPYLLN
Trigger: ATTAAGAAGATATGGTGGGACCAGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCATCATCATTCAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp GACTATCTCATCTTCTTCCTCCTCCACATTCTGTACTaGGGCCTCAAACAGCTCCATACAGCGCACCACACT +
Preference number: 3 (lower is better)
Translates to: DYLIFFLLHILY*GLKQLHTAHHT
Trigger: AGTGTGGTGCGCTGTATGGAGCTGTTTGAGGCCCCAGTACAGAATGTGGAGGAGGAAGAAGATGAGATAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR TCA 72 bp AGACCGAGTGATGCTAGAGGCCCGTCTGAGCCACACTaGGACCTTGTCTTTGAAAAGACTGTTCTGAGATGT +
Preference number: 3 (lower is better)
Translates to: RPSDARGPSEPH*DLVFEKTVLRC
Trigger: ACATCTCAGAACAGTCTTTTCAAAGACAAGGTCTCAGTGTGGCTCAGACGGGCCTCTAGCATCACTCGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 72 bp TCTGTCTTTCCTTCTGAACATCATATTCAAGTTCTCTaGTGGCCTGGCAGGTTGCCACACCCCAAATCCCCT +
Preference number: 3 (lower is better)
Translates to: SVFPSEHHIQVL*WPGRLPHPKSP
Trigger: AGGGGATTTGGGGTGTGGCAACCTGCCAGGCCAGCAGAGAACTTGAATATGATGTTCAGAAGGAAAGACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR GCA 72 bp GCAGCCTTCGGGAAGTCTGTCTTCTTCTTTACTCTGTaGTTCAGCAAGCAAGGCAGCAGCTTGTCTAGACAA +
Preference number: 3 (lower is better)
Translates to: AAFGKSVFFFTL*FSKQGSSLSRQ
Trigger: TTGTCTAGACAAGCTGCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAAGAAGACAGACTTCCCGAAGGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
3UTR CCA 72 bp AGAGGAAGTTCTAAAGGCACAGCGGGAAGAATTTCCTaGGACAGTCAGTTCATTCCTGTGGGAGTCACTTCC +
Preference number: 3 (lower is better)
Translates to: RGSSKGTAGRIS*DSQFIPVGVTS
Trigger: GGAAGTGACTCCCACAGGAATGAACTGACTGTCCCAGGAAATTCTTCCCGCTGTGCCTTTAGAACTTCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 72 bp TTCCTGTGGGAGTCACTTCCCTCCAGGATACAAATCTaGGCAATGGGGATTTTAAACCCAGACTTCTCCTTC +
Preference number: 3 (lower is better)
Translates to: FLWESLPSRIQI*AMGILNPDFSF
Trigger: GAAGGAGAAGTCTGGGTTTAAAATCCCCATTGCTCAGATTTGTATCCTGGAGGGAAGTGACTCCCACAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR TCA 72 bp TCATCTCAAAAGTGGCCTCCTTCAAGCCTCCCTAAGTaGCCTGTCTCTGTCTTTCCTTCTGAACATCATATT +
Preference number: 3 (lower is better)
Translates to: SSQKWPPSSLPK*PVSVFPSEHHI
Trigger: AATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGAGGCTTGAAGGAGGCCACTTTTGAGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GAGGAGGACCCCTCCCCTGAGCAGGCACACATGGGCACAAGCTGTGGTAGCAGGTCTGCCTGGCTCTCCTaGAAGCCGCAGCCTCCGCTG +
Preference number: 4 (lower is better)
Translates to: EEDPSPEQAHMGTSCGSRSAWLS*KPQPPL
Trigger: CAGCGGAGGCTGCGGCTTCCAGGAGAGCCAGGCAGA...CCTGCTACCACAGCTTGTGCCCATGTGTGCCTGCTCAGGGGAGGGGTCCTCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 72 bp CCAGGACCAGCCCCACAGTTCCCTCGAGGTATCGCCTaGACTGCCAGTTATCGTGCCCGCTGGGCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: PGPAPQFPRGIA*TASYRARWALP
Trigger: TGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGAGGGAACTGTGGGGCTGGTCCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CCA 90 bp TGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGACAGCCAGGCCTCACTGGGCCCCATaGGGAGGCAGGCCCAGGATA +
Preference number: 4 (lower is better)
Translates to: CIPWEGGEPRPVEEETARPHWAP*GGRPRI
Trigger: TATCCTGGGCCTGCCTCCCCATGGGGCCCAGTGAGG...CCTGGCTGTCTCCTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp CTAGGCCCAGCTTCCAGCTGGGAGCGTCCAGCAGCTATGGCAGGACCGCTGAGAGGTGGCCCTGAAGAATaGGGGTCAGCCGGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: LGPASSWERPAAMAGPLRGGPEE*GSAGLG
Trigger: TCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACC...TCTCAGCGGTCCTGCCATAGCTGCTGGACGCTCCCAGCTGGAAGCTGGGCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGTGAAGGCTGCTCTGTaGCCTGGCATGTGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEVKAAL*PGMWPP
Trigger: AGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCAC...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp TGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCAAGAGGGCCTGGGTGTaGAGGCTGCTCTGTGACCTG +
Preference number: 4 (lower is better)
Translates to: CCGTKHSEPLYPLGGRRAKRAWV*RLLCDL
Trigger: CAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTT...GGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACCCTGGCCTCAGCAGCTCTCCAGGATTTaGGGCCGGGCTACAGCAGTC +
Preference number: 4 (lower is better)
Translates to: AGLSPRKYFPGLEEPWPQQLSRI*GRATAV
Trigger: GACTGCTGTAGCCCGGCCCCAAATCCTGGAGAGCTG...CTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp GGGCGGCACCCTGCTTCACTGCCTGCACAAACTCCTGGTAGCCACCGGCAGGGGCGTATAGTAGACCCCTaGCATCAGGATGTTGATCGG +
Preference number: 4 (lower is better)
Translates to: GRHPASLPAQTPGSHRQGRIVDP*HQDVDR
Trigger: CCGATCAACATCCTGATGTCAGGGGTCTACTATACG...CCCCTGCCGGTGGCTACCAGGAGTTTGTGCAGGCAGTGAAGCAGGGTGCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp GAGGAGGACCCCTCCCCTGAGCAGGCACACATGGGCACAAGCTGTGGTAGCAGGTCCTGGCTGTGGTGTTaGTTCAGGTGGCCACACAAG +
Preference number: 4 (lower is better)
Translates to: EEDPSPEQAHMGTSCGSRSWLWC*FRWPHK
Trigger: CTTGTGTGGCCACCTGAAGCAACACCACAGCCAGGA...CCTGCTACCACAGCTTGTGCCCATGTGTGCCTGCTCAGGGGAGGGGTCCTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACCCTGGCCTCAGAGCCTGCTGCTGCTCTaGAGCCAGCTCTCCAGGATT +
Preference number: 4 (lower is better)
Translates to: AGLSPRKYFPGLEEPWPQSLLLL*SQLSRI
Trigger: AATCCTGGAGAGCTGGCTCCAGAGCAGCAGCAGGCT...CTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 72 bp CCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTaGGAGGAACCCTGGCCTCAGCACAGACCTCAGCAA +
Preference number: 4 (lower is better)
Translates to: PAGLSPRKYFPG*EEPWPQHRPQQ
Trigger: TTGCTGAGGTCTGTGCTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CAA 72 bp TCGTGCCCGCTGGGCCCTGCCACCCGGCAACTGTGTTaGTTTATCTTCCACATCCCAGGAGCCCTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SCPLGPATRQLC*FIFHIPGALAS
Trigger: AGAAGCCAGGGCTCCTGGGATGTGGAAGATAAACAAACACAGTTGCCGGGTGGCAGGGCCCAGCGGGCACGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp AACGTCAGCACTGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTGGGAGTCCTGGGCGGCACCCTaGTTCACTGCCTGCACAAAC +
Preference number: 4 (lower is better)
Translates to: NVSTAVGPSTVSPCIPWESWAAP*FTACTN
Trigger: GTTTGTGCAGGCAGTGAAGCAGGGTGCCGCCCAGGA...CTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCAGTGCTGACGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp TGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGACAGCCAGGAGAGTAGGTGCACTCTaGGCTGGGCTGCCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: CIPWEGGEPRPVEEETARRVGAL*AGLPER
Trigger: TCTTTCAGGCAGCCCAGCCCAGAGTGCACCTACTCT...CCTGGCTGTCTCCTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 72 bp GCATTGGTGGCCCTGAAGAATGGGGGTCAGCCGGGCTaGGAGGCTCCTCTTCTTCCAGATGATCAGCCTGCT +
Preference number: 4 (lower is better)
Translates to: ALVALKNGGQPG*EAPLLPDDQPA
Trigger: AGCAGGCTGATCATCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACCAATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp TGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCTCCGCTGTTCTCAGGTaGCATGCTCAGGTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: CCGTKHSEPLYPLGGRRASAVLR*HAQVLF
Trigger: AAAGAGGACCTGAGCATGTCACCTGAGAACAGCGGA...GGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp ACAGCAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGTCTCCAGAAGGCCTaGCACCAGGCACCCCAGGAT +
Preference number: 4 (lower is better)
Translates to: TAGSASSPSPGCSMNGLCGLQKA*HQAPQD
Trigger: ATCCTGGGGTGCCTGGTGTCAGGCCTTCTGGAGACC...ACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACGGCACACACACACAGTaGTGGCACTGTTCCTCGGGA +
Preference number: 4 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNGTHTQ*WHCSSG
Trigger: TCCCGAGGAACAGTGCCAGCACTGTGTGTGTGTGCC...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp CCATTCTCTGGATTTCTGGGAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACGGTGGAGCCAGCAGCTaGCCCATGCTGCAGGACACT +
Preference number: 4 (lower is better)
Translates to: PFSGFLGNLPAGLSPRKYGGASS*PMLQDT
Trigger: AGTGTCCTGCAGCATGGGGCAGCTGCTGGCTCCACC...GTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTCCCAGAAATCCAGAGAATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp GGCAGAATACCAGTATCCAACTGCACACCAGTCCCCATCATGCCAGGACCCTTCATCGTCAGTCCCCGCTaGTGCTGTGTCCCCGCGGAT +
Preference number: 4 (lower is better)
Translates to: GRIPVSNCTPVPIMPGPFIVSPR*CCVPAD
Trigger: ATCCGCGGGGACACAGCAGCAGCGGGGACTGACGAT...GAAGGGTCCTGGCATGATGGGGACTGGTGTGCAGTTGGATACTGGTATTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp TGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGACAGCCAGGTCGGGAAGCTCAGCCTaGGTTCCTTGTAGGTCACAT +
Preference number: 4 (lower is better)
Translates to: CIPWEGGEPRPVEEETARSGSSA*VPCRSH
Trigger: ATGTGACCTACAAGGAACCCAGGCTGAGCTTCCCGA...CCTGGCTGTCTCCTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CCA 90 bp GGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTGACTTTGGGCAATCAATGTGGCCTCCTCACTaGGCCCCATGGGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: GALASGHMWVTGSDFGQSMWPPH*APWGGR
Trigger: CCTGCCTCCCCATGGGGCCCAGTGAGGAGGCCACAT...TGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp TGCTGTGGGACCAAGCACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCTGGTGTTGCTTCAGGTaGCCACACAAGTGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: CCGTKHSEPLYPLGGRRAWCCFR*PHKWQV
Trigger: CACTTGCCACTTGTGTGGCCACCTGAAGCAACACCA...GGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGTGCTTGGTCCCACAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp ACAGCAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGCAACGATGGGGCTCTaGCCACCTTCCTCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TAGSASSPSPGCSMNGLCATMGL*PPSSWL
Trigger: CAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGC...ACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp GCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACCCTGGCCTCAGTCCTCGGGATGCATGTaGGGTTTTCAGAGAACTCGA +
Preference number: 4 (lower is better)
Translates to: AGLSPRKYFPGLEEPWPQSSGCM*GFQRTR
Trigger: TCGAGTTCTCTGAAAACCTCACATGCATCCCGAGGA...CTGAGGCCAGGGTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp GGTGGCCCTGAAGAATGGGGGTCAGCCGGGCTTGGAGGCTCCTCTTCTTCCAGATCCTCGGGATGCATGTaGGGTTTTCAGAGAACTCGA +
Preference number: 4 (lower is better)
Translates to: GGPEEWGSAGLGGSSSSRSSGCM*GFQRTR
Trigger: TCGAGTTCTCTGAAAACCTCACATGCATCCCGAGGA...TCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCCATTCTTCAGGGCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCCTGGGAACAGGAGAGTaGCCAGGGCCCTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: KFVSLLLSTTERRTAGSALGTGE*PGPLPS
Trigger: GGAGGGCAAGGGCCCTGGTCACTCTCCTGTTCCCAG...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp CCACCCGGCAACTGTGTTTGTTTATCTTCCACATCCCAGGAGCCCTGGCTTCTGTCCTGGCTTCGGGTCTaGTTATCCCAGAGGGGCACC +
Preference number: 4 (lower is better)
Translates to: PPGNCVCLSSTSQEPWLLSWLRV*LSQRGT
Trigger: GGTGCCCCTCTGGGATAAGCAGACCCGAAGCCAGGA...CAGAAGCCAGGGCTCCTGGGATGTGGAAGATAAACAAACACAGTTGCCGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp CCATTCTCTGGATTTCTGGGAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACCTTGGGCACCTGATCTaGAGGAGGAGGGGCCTTCAC +
Preference number: 4 (lower is better)
Translates to: PFSGFLGNLPAGLSPRKYLGHLI*RRRGLH
Trigger: GTGAAGGCCCCTCCTCCTGCAGATCAGGTGCCCAAG...GTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTCCCAGAAATCCAGAGAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GGGAAAGAGGAGGACCCCTCCCCTGAGCAGGCACACATGGGCACAAGCTGTGGTGCCCACAGTTCCATCTaGTATCTGTCTGATTGGACC +
Preference number: 4 (lower is better)
Translates to: GKEEDPSPEQAHMGTSCGAHSSI*YLSDWT
Trigger: GGTCCAATCAGACAGATACCAGATGGAACTGTGGGC...ACCACAGCTTGTGCCCATGTGTGCCTGCTCAGGGGAGGGGTCCTCCTCTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GAGCAGACAGTGCTGAGCCCGGTCCCATCTTCCAGAACACAGTCAGACTCACTCGACTGCGTGCTGGGGTaGGAATCTGGTCCCACCATA +
Preference number: 4 (lower is better)
Translates to: EQTVLSPVPSSRTQSDSLDCVLG*ESGPTI
Trigger: TATGGTGGGACCAGATTCCCACCCCAGCACGCAGTC...GAGTGAGTCTGACTGTGTTCTGGAAGATGGGACCGGGCTCAGCACTGTCTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp TGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTCTAGTCGGGGTCAGCCGGGCTTaGAGGCTCCTCTTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: CPCCFLQLSGGQQALPLVGVSRA*RLLFFQ
Trigger: CTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCC...GACTAGAGGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp TTCTCCTTCAGCCAGGCAGGAGGGATGCCCACAGGAGGTAGATCTTGGATGGCTCCTTCCTCCTGGCTGTaGTGTTGCTTCAGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: FSFSQAGGMPTGGRSWMAPSSWL*CCFRWP
Trigger: TGGCCACCTGAAGCAACACCACAGCCAGGAGGAAGG...AGCCATCCAAGATCTACCTCCTGTGGGCATCCCTCCTGCCTGGCTGAAGGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GAGCAGACAGTGCTGAGCCCGGTCCCATCTTCCAGAACACAGTCAGACTCACTCTGGCCACCTTCCTCCTaGCTGTGGTGTTGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: EQTVLSPVPSSRTQSDSLWPPSS*LWCCFR
Trigger: CCTGAAGCAACACCACAGCCAGGAGGAAGGTGGCCA...GAGTGAGTCTGACTGTGTTCTGGAAGATGGGACCGGGCTCAGCACTGTCTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GGCAGAATACCAGTATCCAACTGCACACCAGTCCCCATCATGCCAGGACCCTTCCCTCGGTCGTCTGGCTaGGAACAGGAGAGTGACCAG +
Preference number: 4 (lower is better)
Translates to: GRIPVSNCTPVPIMPGPFPRSSG*EQESDQ
Trigger: CTGGTCACTCTCCTGTTCCCAGCCAGACGACCGAGG...GAAGGGTCCTGGCATGATGGGGACTGGTGTGCAGTTGGATACTGGTATTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp GAGCAGACAGTGCTGAGCCCGGTCCCATCTTCCAGAACACAGTCAGACTCACTCGGCAGAGCTGAGAACTaGAGTCCACAGCGCTATCCA +
Preference number: 4 (lower is better)
Translates to: EQTVLSPVPSSRTQSDSLGRAEN*SPQRYP
Trigger: TGGATAGCGCTGTGGACTGCAGTTCTCAGCTCTGCC...GAGTGAGTCTGACTGTGTTCTGGAAGATGGGACCGGGCTCAGCACTGTCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCGGGCTGAAGGAGCCCTaGCACAGCTGTCTGTGCTCA +
Preference number: 4 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVGLKEP*HSCLCS
Trigger: TGAGCACAGACAGCTGTGGCAGGGCTCCTTCAGCCC...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp GTAGGTAGGACAACATCAGCTAGGAAAGCCCAGGACTTAGGAACGTCAGCACTGCACTCTGGGCTGGGCTaGCTGAAAGAGGGCCTGGGT +
Preference number: 4 (lower is better)
Translates to: VGRTTSARKAQDLGTSALHSGLG*LKEGLG
Trigger: ACCCAGGCCCTCTTTCAGGCAGCCCAGCCCAGAGTG...CAGTGCTGACGTTCCTAAGTCCTGGGCTTTCCTAGCTGATGTTGTCCTACCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GCCTCCCTAAGTGACCTGTCTCTGTCTTTCCTTCTGAACATCATATTCAAGTTCGCCACCGGCAGGGGCTaGGGTGGAGCCAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ASLSDLSLSFLLNIIFKFATGRG*GGASSC
Trigger: GCAGCTGCTGGCTCCACCCCAGCCCCTGCCGGTGGC...GAACTTGAATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 72 bp GGGCCCTTGCCCTCCCCTGACAAGTTTGAGGGTGTCTaGGGTGCTGACATGAGGTTGGCTTCTGGTGGTATT +
Preference number: 4 (lower is better)
Translates to: GPLPSPDKFEGV*GADMRLASGGI
Trigger: AATACCACCAGAAGCCAACCTCATGTCAGCACCCAAGACACCCTCAAACTTGTCAGGGGAGGGCAAGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp GGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTGACTTTGGGCAATCAGCTCACCCAGGACCTTaGTGCTCCCAGATCCAGTCA +
Preference number: 4 (lower is better)
Translates to: GALASGHMWVTGSDFGQSAHPGP*CSQIQS
Trigger: TGACTGGATCTGGGAGCATCAAGGTCCTGGGTGAGC...TGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp AGTACACAATACCAAAGCCCAGGTCATCCCCAAAGGGCTTGGGCACCTGATCTGGCTCACCCAGGACCTTaGTGCTCCCAGATCCAGTCA +
Preference number: 4 (lower is better)
Translates to: STQYQSPGHPQRAWAPDLAHPGP*CSQIQS
Trigger: TGACTGGATCTGGGAGCATCAAGGTCCTGGGTGAGC...CAGATCAGGTGCCCAAGCCCTTTGGGGATGACCTGGGCTTTGGTATTGTGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp TGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGAGACAGCCAGGTGCTCAGGTCCTCTTTaGCTATCTCATCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: CIPWEGGEPRPVEEETARCSGPL*LSHLLP
Trigger: AGGAAGAAGATGAGATAGTCAAAGAGGACCTGAGCA...CCTGGCTGTCTCCTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp AGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCCTCTCTCAACCCAGTCACCTCCTTTaGGCCCCAGCTCCAGACCAA +
Preference number: 4 (lower is better)
Translates to: SPGCSMNGLCGAIPVLSQPSHLL*APAPDQ
Trigger: TTGGTCTGGAGCTGGGGCTCAAAGGAGGTGACTGGG...TTGAGAGAGGACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp GGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTGACTTTGGGCAATCAGCTCCCCAGGGATGGTaGTCTGTCATCGTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: GALASGHMWVTGSDFGQSAPQGW*SVIVAA
Trigger: TGCTGCTACGATGACAGATCACCATCCCTGGGGAGC...TGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp GAGCAGACAGTGCTGAGCCCGGTCCCATCTTCCAGAACACAGTCAGACTCACTCTCTTGGGTGCTGACATaGGGTTGGCTTCTGGTGGTA +
Preference number: 4 (lower is better)
Translates to: EQTVLSPVPSSRTQSDSLSWVLT*GWLLVV
Trigger: TACCACCAGAAGCCAACCTCATGTCAGCACCCAAGA...GAGTGAGTCTGACTGTGTTCTGGAAGATGGGACCGGGCTCAGCACTGTCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCGGGTGTCTTGGGTGCTaGCATGAGGTTGGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVGCLGC*HEVGFW
Trigger: CCAGAAGCCAACCTCATGTCAGCACCCAAGACACCC...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp GAAACCTGCCAGCTGGGCTGTCTCCCAGGAAGTACTTCCCTGGCTTGGAGGAACACTCACACGTGGAAGTaGGGATGTAGTCAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: ETCQLGCLPGSTSLAWRNTHTWK*GCSQRS
Trigger: GCTTCTCTGACTACATCCGCACTTCCACGTGTGAGT...GTTCCTCCAAGCCAGGGAAGTACTTCCTGGGAGACAGCCCAGCTGGCAGGTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp ACAGCAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGCAGAGCTGAGAACTaGAGTCCACAGCGCTATCCA +
Preference number: 4 (lower is better)
Translates to: TAGSASSPSPGCSMNGLCGRAEN*SPQRYP
Trigger: TGGATAGCGCTGTGGACTGCAGTTCTCAGCTCTGCC...ACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp ACAGCTCTGCCCCATTCCCAAGTCATTCCCTTAAACCAACTGCTGGGGCCTTGTCATGGGACACCAGCCTaGCTTTCCAGGACTCTGGAG +
Preference number: 4 (lower is better)
Translates to: TALPHSQVIPLNQLLGPCHGTPA*LSRTLE
Trigger: CTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATG...ACAAGGCCCCAGCAGTTGGTTTAAGGGAATGACTTGGGAATGGGGCAGAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp GGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTGACTTTGGGCAATCACCTGGGTGTGAAGGCTaGTCTGTGACCTGGCATGTG +
Preference number: 4 (lower is better)
Translates to: GALASGHMWVTGSDFGQSPGCEG*SVTWHV
Trigger: CACATGCCAGGTCACAGAGCAGCCTTCACACCCAGG...TGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GGGAAAGAGGAGGACCCCTCCCCTGAGCAGGCACACATGGGCACAAGCTGTGGTTGGTATCTGTCTGATTaGACCGGCCTATTCATTTCC +
Preference number: 4 (lower is better)
Translates to: GKEEDPSPEQAHMGTSCGWYLSD*TGLFIS
Trigger: GGAAATGAATAGGCCGGTCCAATCAGACAGATACCA...ACCACAGCTTGTGCCCATGTGTGCCTGCTCAGGGGAGGGGTCCTCCTCTTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGTGGTATCTGTCTGATTaGACCGGCCTATTCATTTCC +
Preference number: 4 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEWYLSD*TGLFIS
Trigger: GGAAATGAATAGGCCGGTCCAATCAGACAGATACCA...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CCA 90 bp GGAGCCCTGGCTTCTGGTCATATGTGGGTAACTGGCAGTGACTTTGGGCAATCACTGGAGAGACTTGGTTaGGGCAGCCTTCGGGAAGTC +
Preference number: 4 (lower is better)
Translates to: GALASGHMWVTGSDFGQSLERLG*GSLREV
Trigger: GACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAG...TGATTGCCCAAAGTCACTGCCAGTTACCCACATATGACCAGAAGCCAGGGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp ACAGCAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGCCTTTCCAGGACTCTaGAGAGACTTGGTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: TAGSASSPSPGCSMNGLCAFPGL*RDLVGA
Trigger: TGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGC...ACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp ACAGCTCTGCCCCATTCCCAAGTCATTCCCTTAAACCAACTGCTGGGGCCTTGTTGCAGGACACTCATGTaGAGGATCTGCTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: TALPHSQVIPLNQLLGPCCRTLM*RICSQL
Trigger: GAGCTGGGAGCAGATCCTTCACATGAGTGTCCTGCA...ACAAGGCCCCAGCAGTTGGTTTAAGGGAATGACTTGGGAATGGGGCAGAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp GAAAGAGGGCCTGGGTGTGAAGGCTGCTCTGTGACCTGGCATGTGGCCTCCTCACTATTCATTTCCATGTaGCACACACACACAGTGCTG +
Preference number: 4 (lower is better)
Translates to: ERGPGCEGCSVTWHVASSLFISM*HTHTVL
Trigger: CAGCACTGTGTGTGTGTGCCACATGGAAATGAATAG...TGAGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR CCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCCATCCCCAAAGGGCTTaGGCACCTGATCTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: KFVSLLLSTTERRTAGSAHPQRA*APDLQE
Trigger: CTCCTGCAGATCAGGTGCCCAAGCCCTTTGGGGATG...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 72 bp GCTTGTCTAGACAAGTTTTCCAGTGCGGGTACTTGGTaGACTCCTGGCTTCGGGTCTGCTTATCCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: ACLDKFSSAGTW*TPGFGSAYPRG
Trigger: CCCTCTGGGATAAGCAGACCCGAAGCCAGGAGTCAACCAAGTACCCGCACTGGAAAACTTGTCTAGACAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCGGCACCTGTGCATCCTaGATGATGATGGCCACCAAG +
Preference number: 4 (lower is better)
Translates to: KFVSLLLSTTERRTAGSAGTCAS*MMMATK
Trigger: CTTGGTGGCCATCATCATTCAGGATGCACAGGTGCC...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp ACAGCAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTACTCACACGTGGAAGTaGGGATGTAGTCAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: TAGSASSPSPGCSMNGLCTHTWK*GCSQRS
Trigger: GCTTCTCTGACTACATCCGCACTTCCACGTGTGAGT...ACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CAA 72 bp AGCAGCTTGTCTAGACAAGTTTTCCAGTGCGGGTACTaGGTTGACTCCTGGCTTCGGGTCTGCTTATCCCAG +
Preference number: 4 (lower is better)
Translates to: SSLSRQVFQCGY*VDSWLRVCLSQ
Trigger: CTGGGATAAGCAGACCCGAAGCCAGGAGTCAACCAAGTACCCGCACTGGAAAACTTGTCTAGACAAGCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR TCA 90 bp TGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTCTAGTCCGTATAGTAGACCCCTaGCATCAGGATGTTGATCGG +
Preference number: 4 (lower is better)
Translates to: CPCCFLQLSGGQQALPLVRIVDP*HQDVDR
Trigger: CCGATCAACATCCTGATGTCAGGGGTCTACTATACG...GACTAGAGGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp GGAGTCACTTCCCTCCAGGATACAAATCTGAGCAATGGGGATTTTAAACCCAGATGGCCACCAAGGGACTaGGTGCTGGGGTGGGAATCT +
Preference number: 4 (lower is better)
Translates to: GVTSLQDTNLSNGDFKPRWPPRD*VLGWES
Trigger: AGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCA...TCTGGGTTTAAAATCCCCATTGCTCAGATTTGTATCCTGGAGGGAAGTGACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp AAGTTTGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTCGGGAAGCTCAGCCTaGGTTCCTTGTAGGTCACAT +
Preference number: 4 (lower is better)
Translates to: KFVSLLLSTTERRTAGSASGSSA*VPCRSH
Trigger: ATGTGACCTACAAGGAACCCAGGCTGAGCTTCCCGA...GGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp GGATTGTCTGCAAGGACAAGTGGGACCTGCGTGCAAGCCAGAGTAGGTGCACTCATAGACTATGAATTCTaGAGGGTTGTCCTCTCTGGA +
Preference number: 4 (lower is better)
Translates to: GLSARTSGTCVQARVGALIDYEF*RVVLSG
Trigger: TCCAGAGAGGACAACCCTGCAGAATTCATAGTCTAT...GAGTGCACCTACTCTGGCTTGCACGCAGGTCCCACTTGTCCTTGCAGACAATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR CCA 90 bp GCCTCCCTAAGTGACCTGTCTCTGTCTTTCCTTCTGAACATCATATTCAAGTTCGCCATGATGTCTGCCTaGCTCTCCTGGAAGCCGCAG +
Preference number: 4 (lower is better)
Translates to: ASLSDLSLSFLLNIIFKFAMMSA*LSWKPQ
Trigger: CTGCGGCTTCCAGGAGAGCCAGGCAGACATCATGGC...GAACTTGAATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
3UTR CAA 72 bp TTGAAGGTCAAGTGCCGGACTGGGAAGCTGCGTTTATaGAACAGGATCTCACTGTCAAAGCCTAGGCTAGCC +
Preference number: 4 (lower is better)
Translates to: LKVKCRTGKLRL*NRISLSKPRLA
Trigger: GGCTAGCCTAGGCTTTGACAGTGAGATCCTGTTCAATAAACGCAGCTTCCCAGTCCGGCACTTGACCTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp TCCCTAAGTGACCTGTCTCTGTCTTTCCTTCTGAACATCATATTCAAGTTCTCTGCAAGCCAGAGTAGGTaGACTCTGGGCTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: SLSDLSLSFLLNIIFKFSASQSR*TLGWAA
Trigger: GGCAGCCCAGCCCAGAGTGCACCTACTCTGGCTTGC...AGAGAACTTGAATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR GCA 90 bp TCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTGGGGCAATACCTGTCATAGACTATGAATTCTaGAGGGTTGTCCTCTCTGGA +
Preference number: 4 (lower is better)
Translates to: SSPSPGCSMNGLCGAIPVIDYEF*RVVLSG
Trigger: TCCAGAGAGGACAACCCTGCAGAATTCATAGTCTAT...GACAGGTATTGCCCCACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR GCA 90 bp GCTGGCTTCTACTGGACCACCTCTCAAGAGGCAGAACTAAGGCAGAATACCAGTTTCTTCTTTACTCTGTaGTTCAGCAAGCAAGGCAGC +
Preference number: 4 (lower is better)
Translates to: AGFYWTTSQEAELRQNTSFFFTL*FSKQGS
Trigger: GCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAAGAA...ACTGGTATTCTGCCTTAGTTCTGCCTCTTGAGAGGTGGTCCAGTAGAAGCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CCA 90 bp TCTGAGGCTGGCTTCTACTGGACCACCTCTCAAGAGGCAGAACTAAGGCAGAATCTATTCATTTCCATGTaGCACACACACACAGTGCTG +
Preference number: 4 (lower is better)
Translates to: SEAGFYWTTSQEAELRQNLFISM*HTHTVL
Trigger: CAGCACTGTGTGTGTGTGCCACATGGAAATGAATAG...ATTCTGCCTTAGTTCTGCCTCTTGAGAGGTGGTCCAGTAGAAGCCAGCCTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR TCA 90 bp GTAGGTAGGACAACATCAGCTAGGAAAGCCCAGGACTTAGGAACGTCAGCACTGTCACATTATAGACTATaGATTCTGCAGGGTTGTCCT +
Preference number: 4 (lower is better)
Translates to: VGRTTSARKAQDLGTSALSHYRL*ILQGCP
Trigger: AGGACAACCCTGCAGAATTCATAGTCTATAATGTGA...CAGTGCTGACGTTCCTAAGTCCTGGGCTTTCCTAGCTGATGTTGTCCTACCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CAA 72 bp ATGTGGGTAACTGGCAGTGACTTTGGGCAATCAAGTTaGTGTCCTTGTTGCTTTCTACAACTGAGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: MWVTGSDFGQSS*CPCCFLQLSGG
Trigger: TCCTCCGCTCAGTTGTAGAAAGCAACAAGGACACAAACTTGATTGCCCAAAGTCACTGCCAGTTACCCACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
3UTR CAA 72 bp TTCTTTACTCTGTGCTTCAGCAAGCAAGGCAGCAGCTaGTCTAGACAAGTTTTCCAGTGCGGGTACTTGGTT +
Preference number: 4 (lower is better)
Translates to: FFTLCFSKQGSS*SRQVFQCGYLV
Trigger: AACCAAGTACCCGCACTGGAAAACTTGTCTAGACAAGCTGCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp ACAGTGAGCCCCTGTATCCCTTGGGAGGGAGGAGAGCCCAGGCCAGTGGAAGAGGGGGGTCAGCCGGGCTaGGAGGCTCCTCTTCTTCCA +
Preference number: 5 (lower is better)
Translates to: TVSPCIPWEGGEPRPVEEGGQPG*EAPLLP
Trigger: TGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCCCC...CTCTTCCACTGGCCTGGGCTCTCCTCCCTCCCAAGGGATACAGGGGCTCACTGT
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp TCGAGGTATCGCCTTGACTGCCAGTTATCGTGCCCGCTGGGCCCTGCCACCCGGCTCCTGGCTGTGGTGTaGCTTCAGGTGGCCACACAA +
Preference number: 5 (lower is better)
Translates to: SRYRLDCQLSCPLGPATRLLAVV*LQVATQ
Trigger: TTGTGTGGCCACCTGAAGCAACACCACAGCCAGGAG...CCGGGTGGCAGGGCCCAGCGGGCACGATAACTGGCAGTCAAGGCGATACCTCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp CTAGGCCCAGCTTCCAGCTGGGAGCGTCCAGCAGCTATGGCAGGACCGCTGAGATCTCCACTGGCTGCATaGGTGGCCCTGAAGAATGGG +
Preference number: 5 (lower is better)
Translates to: LGPASSWERPAAMAGPLRSPLAA*VALKNG
Trigger: CCCATTCTTCAGGGCCACCAATGCAGCCAGTGGAGA...TCTCAGCGGTCCTGCCATAGCTGCTGGACGCTCCCAGCTGGAAGCTGGGCCTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CCA 90 bp ATGGTGACCCCCAGTGGAAGGCGCTGTATCAGGGGCAGCTGGAAGTaGTTGTACCACGTGATGCTAGGACTCCACTCACTCCAGGTGCCA +
Preference number: 5 (lower is better)
Translates to: MVTPSGRRCIRGSWK*LYHVMLGLHSLQVP
Trigger: TGGCACCTGGAGTGAGTGGAGTCCTAGCATCACGTGGTACAACCACTTCCAGCTGCCCCTGATACAGCGCCTTCCACTGGGGGTCACCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CCA 90 bp CAGGAGATGGTGACCCCCAGTGGAAGGCGCTGTATCAGGGGCAGCTaGAAGTGGTTGTACCACGTGATGCTAGGACTCCACTCACTCCAG +
Preference number: 5 (lower is better)
Translates to: QEMVTPSGRRCIRGS*KWLYHVMLGLHSLQ
Trigger: CTGGAGTGAGTGGAGTCCTAGCATCACGTGGTACAACCACTTCCAGCTGCCCCTGATACAGCGCCTTCCACTGGGGGTCACCATCTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CCA 90 bp GCTGAGAACTGCAGTCCACAGCGCTATCCAGGAACCACTCACACGTaGAAGTGCGGATGTAGTCAGAGAAGCAGGTGGGCTCACCCAGGA +
Preference number: 5 (lower is better)
Translates to: AENCSPQRYPGTTHT*KCGCSQRSRWAHPG
Trigger: TCCTGGGTGAGCCCACCTGCTTCTCTGACTACATCCGCACTTCCACGTGTGAGTGGTTCCTGGATAGCGCTGTGGACTGCAGTTCTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp GACATGAGGTTGGCTTCTGGTGGTATTCCCTCAGGACAGCTTTCCAAGGCCCCCGTGTGGAGTGTGAGGTaGTCTGGAGCTAGGGGCTTC +
Preference number: 5 (lower is better)
Translates to: DMRLASGGIPSGQLSKAPVWSVR*SGARGF
Trigger: GAAGCCCCTAGCTCCAGACAACCTCACACTCCACAC...GGGGGCCTTGGAAAGCTGTCCTGAGGGAATACCACCAGAAGCCAACCTCATGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp GAAAGAGGGCCTGGGTGTGAAGGCTGCTCTGTGACCTGGCATGTGGCCTCCTCACATTCGTCGGACACATaGGTGTGGAGTGTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: ERGPGCEGCSVTWHVASSHSSDT*VWSVRL
Trigger: CAACCTCACACTCCACACCAATGTGTCCGACGAATG...TGAGGAGGCCACATGCCAGGTCACAGAGCAGCCTTCACACCCAGGCCCTCTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp CCACCCGGCAACTGTGTTTGTTTATCTTCCACATCCCAGGAGCCCTGGCTTCTGACCCAGTCACCTCCTTaGAGCCCCAGCTCCAGACCA +
Preference number: 5 (lower is better)
Translates to: PPGNCVCLSSTSQEPWLLTQSPP*SPSSRP
Trigger: TGGTCTGGAGCTGGGGCTCAAAGGAGGTGACTGGGT...CAGAAGCCAGGGCTCCTGGGATGTGGAAGATAAACAAACACAGTTGCCGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp TGTCCTTGTTGCTTTCTACAACTGAGCGGAGGACAGCAGGCTCTGCCTCTAGTCGTGTGGAGTGTGAGGTaGTCTGGAGCTAGGGGCTTC +
Preference number: 5 (lower is better)
Translates to: CPCCFLQLSGGQQALPLVVWSVR*SGARGF
Trigger: GAAGCCCCTAGCTCCAGACAACCTCACACTCCACAC...GACTAGAGGCAGAGCCTGCTGTCCTCCGCTCAGTTGTAGAAAGCAACAAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp ACTCACCTAAGAAACAGCAATGCCCAGGGCGCCCACAGGCACCTCGGTCGTCTGATGAATTCTGCAGGGTaGTCCTCTCTGGAGATGTTG +
Preference number: 5 (lower is better)
Translates to: THLRNSNAQGAHRHLGRLMNSAG*SSLEML
Trigger: CAACATCTCCAGAGAGGACAACCCTGCAGAATTCAT...CAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAGGTGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp GGCAGAATACCAGTATCCAACTGCACACCAGTCCCCATCATGCCAGGACCCTTCGGCAGCTGGAAGTGGTaGTACCACGTGATGCTAGGA +
Preference number: 5 (lower is better)
Translates to: GRIPVSNCTPVPIMPGPFGSWKW*YHVMLG
Trigger: TCCTAGCATCACGTGGTACAACCACTTCCAGCTGCC...GAAGGGTCCTGGCATGATGGGGACTGGTGTGCAGTTGGATACTGGTATTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp GAGCAGACAGTGCTGAGCCCGGTCCCATCTTCCAGAACACAGTCAGACTCACTCTCCTCTCTGGAGATGTaGACCATGGAGATGAGGTCT +
Preference number: 5 (lower is better)
Translates to: EQTVLSPVPSSRTQSDSLSSLEM*TMEMRS
Trigger: AGACCTCATCTCCATGGTCAACATCTCCAGAGAGGA...GAGTGAGTCTGACTGTGTTCTGGAAGATGGGACCGGGCTCAGCACTGTCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp ACAGCAGGCTCTGCCTCTAGTCCCAGTCCTGGCTGTTCAATGAATGGCCTCTGTTCCTCTCTGGAGATGTaGACCATGGAGATGAGGTCT +
Preference number: 5 (lower is better)
Translates to: TAGSASSPSPGCSMNGLCSSLEM*TMEMRS
Trigger: AGACCTCATCTCCATGGTCAACATCTCCAGAGAGGA...ACAGAGGCCATTCATTGAACAGCCAGGACTGGGACTAGAGGCAGAGCCTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS TCA 90 bp TGTGGCACACACACACAGTGCTGGCACTGTTCCTCGGGATGCATGTaGGGTTTTCAGAGAACTCGAAGAACATCAGCCTGTAGTGTAGGC +
Preference number: 5 (lower is better)
Translates to: CGTHTQCWHCSSGCM*GFQRTRRTSACSVG
Trigger: GCCTACACTACAGGCTGATGTTCTTCGAGTTCTCTGAAAACCTCACATGCATCCCGAGGAACAGTGCCAGCACTGTGTGTGTGTGCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS TCA 90 bp CCACAGCTGTCTGTGCTCAGCCCACAGTTCCATCTGGTATCTGTCTaGTTGGACCGGCCTATTCATTTCCATGTGGCACACACACACAGT +
Preference number: 5 (lower is better)
Translates to: PQLSVLSPQFHLVSV*LDRPIHFHVAHTHS
Trigger: ACTGTGTGTGTGTGCCACATGGAAATGAATAGGCCGGTCCAATCAGACAGATACCAGATGGAACTGTGGGCTGAGCACAGACAGCTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS CCA 90 bp AGCTGTCTGTGCTCAGCCCACAGTTCCATCTGGTATCTGTCTGATTaGACCGGCCTATTCATTTCCATGTGGCACACACACACAGTGCTG +
Preference number: 5 (lower is better)
Translates to: SCLCSAHSSIWYLSD*TGLFISMWHTHTVL
Trigger: CAGCACTGTGTGTGTGTGCCACATGGAAATGAATAGGCCGGTCCAATCAGACAGATACCAGATGGAACTGTGGGCTGAGCACAGACAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS CCA 90 bp TACAGGTTATTCCAGGTCAGCAGCCATTCGTCGGACACATTGGTGTaGAGTGTGAGGTTGTCTGGAGCTAGGGGCTTCACATTACCACTG +
Preference number: 5 (lower is better)
Translates to: YRLFQVSSHSSDTLV*SVRLSGARGFTLPL
Trigger: CAGTGGTAATGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCTGCTGACCTGGAATAACCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp GCTGGCTTCTACTGGACCACCTCTCAAGAGGCAGAACTAAGGCAGAATACCAGTCATTCGTCGGACACATaGGTGTGGAGTGTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: AGFYWTTSQEAELRQNTSHSSDT*VWSVRL
Trigger: CAACCTCACACTCCACACCAATGTGTCCGACGAATG...ACTGGTATTCTGCCTTAGTTCTGCCTCTTGAGAGGTGGTCCAGTAGAAGCCAGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS GCA 90 bp GCTCAGCCTGGGTTCCTTGTAGGTCACATTATAGACTATGAATTCTaGAGGGTTGTCCTCTCTGGAGATGTTGACCATGGAGATGAGGTC +
Preference number: 5 (lower is better)
Translates to: AQPGFLVGHIIDYEF*RVVLSGDVDHGDEV
Trigger: GACCTCATCTCCATGGTCAACATCTCCAGAGAGGACAACCCTGCAGAATTCATAGTCTATAATGTGACCTACAAGGAACCCAGGCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS-3UTR CAA 90 bp GTAGGTAGGACAACATCAGCTAGGAAAGCCCAGGACTTAGGAACGTCAGCACTGATGCTCAGGTCCTCTTaGACTATCTCATCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: VGRTTSARKAQDLGTSALMLRSS*TISSSS
Trigger: GGAAGAAGATGAGATAGTCAAAGAGGACCTGAGCAT...CAGTGCTGACGTTCCTAAGTCCTGGGCTTTCCTAGCTGATGTTGTCCTACCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp TCCCTAAGTGACCTGTCTCTGTCTTTCCTTCTGAACATCATATTCAAGTTCTCTTCTGGAGAGACTTGGTaGGGGCAGCCTTCGGGAAGT +
Preference number: 5 (lower is better)
Translates to: SLSDLSLSFLLNIIFKFSSGETW*GQPSGS
Trigger: ACTTCCCGAAGGCTGCCCCAACCAAGTCTCTCCAGA...AGAGAACTTGAATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp TCTGAGGCTGGCTTCTACTGGACCACCTCTCAAGAGGCAGAACTAAGGCAGAATATGGAGATGAGGTCTTaGTACAGTAAGTTGTTCGAT +
Preference number: 5 (lower is better)
Translates to: SEAGFYWTTSQEAELRQNMEMRS*YSKLFD
Trigger: ATCGAACAACTTACTGTACAAAGACCTCATCTCCAT...ATTCTGCCTTAGTTCTGCCTCTTGAGAGGTGGTCCAGTAGAAGCCAGCCTCAGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS-3UTR CAA 90 bp GCCTCCCTAAGTGACCTGTCTCTGTCTTTCCTTCTGAACATCATATTCAAGTTCATGAATTCTGCAGGGTaGTCCTCTCTGGAGATGTTG +
Preference number: 5 (lower is better)
Translates to: ASLSDLSLSFLLNIIFKFMNSAG*SSLEML
Trigger: CAACATCTCCAGAGAGGACAACCCTGCAGAATTCAT...GAACTTGAATATGATGTTCAGAAGGAAAGACAGAGACAGGTCACTTAGGGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CAA 90 bp GTGACCCCCAGTGGAAGGCGCTGTATCAGGGGCAGCTGGAAGTGGTaGTACCACGTGATGCTAGGACTCCACTCACTCCAGGTGCCAGTG +
Preference number: 6 (lower is better)
Translates to: VTPSGRRCIRGSWKW*YHVMLGLHSLQVPV
Trigger: CACTGGCACCTGGAGTGAGTGGAGTCCTAGCATCACGTGGTACAACCACTTCCAGCTGCCCCTGATACAGCGCCTTCCACTGGGGGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CCA 72 bp CCCAGTGGAAGGCGCTGTATCAGGGGCAGCTGGAAGTaGTTGTACCACGTGATGCTAGGACTCCACTCACTC +
Preference number: 6 (lower is better)
Translates to: PSGRRCIRGSWK*LYHVMLGLHSL
Trigger: GAGTGAGTGGAGTCCTAGCATCACGTGGTACAACCACTTCCAGCTGCCCCTGATACAGCGCCTTCCACTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CAA 90 bp CAGGTCAGCAGCCATTCGTCGGACACATTGGTGTGGAGTGTGAGGTaGTCTGGAGCTAGGGGCTTCACATTACCACTGGGGCTGAAGGAG +
Preference number: 6 (lower is better)
Translates to: QVSSHSSDTLVWSVR*SGARGFTLPLGLKE
Trigger: CTCCTTCAGCCCCAGTGGTAATGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCTGCTGACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS CAA 72 bp AGTGGAAGGCGCTGTATCAGGGGCAGCTGGAAGTGGTaGTACCACGTGATGCTAGGACTCCACTCACTCCAG +
Preference number: 6 (lower is better)
Translates to: SGRRCIRGSWKW*YHVMLGLHSLQ
Trigger: CTGGAGTGAGTGGAGTCCTAGCATCACGTGGTACAACCACTTCCAGCTGCCCCTGATACAGCGCCTTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033004.8
CDS CCA 72 bp TTCCAGGTCAGCAGCCATTCGTCGGACACATTGGTGTaGAGTGTGAGGTTGTCTGGAGCTAGGGGCTTCACA +
Preference number: 6 (lower is better)
Translates to: FQVSSHSSDTLV*SVRLSGARGFT
Trigger: TGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCTGCTGACCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS CAA 72 bp AGCCATTCGTCGGACACATTGGTGTGGAGTGTGAGGTaGTCTGGAGCTAGGGGCTTCACATTACCACTGGGG +
Preference number: 6 (lower is better)
Translates to: SHSSDTLVWSVR*SGARGFTLPLG
Trigger: CCCCAGTGGTAATGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS CAA 72 bp AGGTTATTCCAGGTCAGCAGCCATTCGTCGGACACATaGGTGTGGAGTGTGAGGTTGTCTGGAGCTAGGGGC +
Preference number: 6 (lower is better)
Translates to: RLFQVSSHSSDT*VWSVRLSGARG
Trigger: GCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCTGCTGACCTGGAATAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS TCA 72 bp TCAGCAGCCATTCGTCGGACACATTGGTGTGGAGTGTaGGGTTGTCTGGAGCTAGGGGCTTCACATTACCAC +
Preference number: 6 (lower is better)
Translates to: SAAIRRTHWCGV*GCLELGASHYH
Trigger: GTGGTAATGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCTGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS GCA 72 bp AGAACATCAGCCTGTAGTGTAGGCAGAGCTGAGAACTaGAGTCCACAGCGCTATCCAGGAACCACTCACACG +
Preference number: 6 (lower is better)
Translates to: RTSACSVGRAEN*SPQRYPGTTHT
Trigger: CGTGTGAGTGGTTCCTGGATAGCGCTGTGGACTGCAGTTCTCAGCTCTGCCTACACTACAGGCTGATGTTCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS TCA 72 bp TGTAGTCAGAGAAGCAGGTGGGCTCACCCAGGACCTTaGTGCTCCCAGATCCAGTCACCAACAGCAAAATCA +
Preference number: 6 (lower is better)
Translates to: CSQRSRWAHPGP*CSQIQSPTAKS
Trigger: TGATTTTGCTGTTGGTGACTGGATCTGGGAGCATCAAGGTCCTGGGTGAGCCCACCTGCTTCTCTGACTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206217.2
ENSMUST00000206846.2
CDS CCA 72 bp TGCCACAGCTGTCTGTGCTCAGCCCACAGTTCCATCTaGTATCTGTCTGATTGGACCGGCCTATTCATTTCC +
Preference number: 6 (lower is better)
Translates to: CHSCLCSAHSSI*YLSDWTGLFIS
Trigger: GGAAATGAATAGGCCGGTCCAATCAGACAGATACCAGATGGAACTGTGGGCTGAGCACAGACAGCTGTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS CAA 90 bp GATGGGTACAGGTTATTCCAGGTCAGCAGCCATTCGTCGGACACATaGGTGTGGAGTGTGAGGTTGTCTGGAGCTAGGGGCTTCACATTA +
Preference number: 6 (lower is better)
Translates to: DGYRLFQVSSHSSDT*VWSVRLSGARGFTL
Trigger: TAATGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGGCTGCTGACCTGGAATAACCTGTACCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS TCA 72 bp CACACACAGTGCTGGCACTGTTCCTCGGGATGCATGTaGGGTTTTCAGAGAACTCGAAGAACATCAGCCTGT +
Preference number: 6 (lower is better)
Translates to: HTQCWHCSSGCM*GFQRTRRTSAC
Trigger: ACAGGCTGATGTTCTTCGAGTTCTCTGAAAACCTCACATGCATCCCGAGGAACAGTGCCAGCACTGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS TCA 72 bp TCTGTGCTCAGCCCACAGTTCCATCTGGTATCTGTCTaGTTGGACCGGCCTATTCATTTCCATGTGGCACAC +
Preference number: 6 (lower is better)
Translates to: SVLSPQFHLVSV*LDRPIHFHVAH
Trigger: GTGTGCCACATGGAAATGAATAGGCCGGTCCAATCAGACAGATACCAGATGGAACTGTGGGCTGAGCACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS CCA 72 bp TGCTCAGCCCACAGTTCCATCTGGTATCTGTCTGATTaGACCGGCCTATTCATTTCCATGTGGCACACACAC +
Preference number: 6 (lower is better)
Translates to: CSAHSSIWYLSD*TGLFISMWHTH
Trigger: GTGTGTGTGCCACATGGAAATGAATAGGCCGGTCCAATCAGACAGATACCAGATGGAACTGTGGGCTGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033004.8
ENSMUST00000205985.2
ENSMUST00000206846.2
CDS CAA 90 bp GCAGGGTTGTCCTCTCTGGAGATGTTGACCATGGAGATGAGGTCTTaGTACAGTAAGTTGTTCGATGGGTACAGGTTATTCCAGGTCAGC +
Preference number: 6 (lower is better)
Translates to: AGLSSLEMLTMEMRS*YSKLFDGYRLFQVS
Trigger: GCTGACCTGGAATAACCTGTACCCATCGAACAACTTACTGTACAAAGACCTCATCTCCATGGTCAACATCTCCAGAGAGGACAACCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS CAA 90 bp TCTCTGGAGATGTTGACCATGGAGATGAGGTCTTTGTACAGTAAGTaGTTCGATGGGTACAGGTTATTCCAGGTCAGCAGCCATTCGTCG +
Preference number: 6 (lower is better)
Translates to: SLEMLTMEMRSLYSK*FDGYRLFQVSSHSS
Trigger: CGACGAATGGCTGCTGACCTGGAATAACCTGTACCCATCGAACAACTTACTGTACAAAGACCTCATCTCCATGGTCAACATCTCCAGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS GCA 72 bp GGGTTCCTTGTAGGTCACATTATAGACTATGAATTCTaGAGGGTTGTCCTCTCTGGAGATGTTGACCATGGA +
Preference number: 6 (lower is better)
Translates to: GFLVGHIIDYEF*RVVLSGDVDHG
Trigger: TCCATGGTCAACATCTCCAGAGAGGACAACCCTGCAGAATTCATAGTCTATAATGTGACCTACAAGGAACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS CAA 72 bp ATGTTGACCATGGAGATGAGGTCTTTGTACAGTAAGTaGTTCGATGGGTACAGGTTATTCCAGGTCAGCAGC +
Preference number: 6 (lower is better)
Translates to: MLTMEMRSLYSK*FDGYRLFQVSS
Trigger: GCTGCTGACCTGGAATAACCTGTACCCATCGAACAACTTACTGTACAAAGACCTCATCTCCATGGTCAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2
CDS CAA 72 bp TCCTCTCTGGAGATGTTGACCATGGAGATGAGGTCTTaGTACAGTAAGTTGTTCGATGGGTACAGGTTATTC +
Preference number: 6 (lower is better)
Translates to: SSLEMLTMEMRS*YSKLFDGYRLF
Trigger: GAATAACCTGTACCCATCGAACAACTTACTGTACAAAGACCTCATCTCCATGGTCAACATCTCCAGAGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033004.8
ENSMUST00000206846.2