Pregenerated sensors for IL31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029437Ensembl transcript IDs: ENSMUST00000031389.12, ENSMUST00000198463.2, ENSMUST00000198901.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGCCCTCGAAGGACAGGCACTGCACCGAAGGACAAGCTaGAGGTGGCCAGCCAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: PFGVKSWVASSALEGQALHRRTS*RWPARF Trigger: GAACCTGGCTGGCCACCTGCAGCTTGTCCTTCGGTG...CAGTGCCTGTCCTTCGAGGGCTGAGCTTGCAACCCAGGACTTAACTCCAAAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031389.12 |
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| CDS-3UTR GCA 90 bp | TGGGTTGCAAGCTCAGCCCTCGAAGGACAGGCACTGCTGAGGACACTGCACCCCGTATTGTCCTTAGCCTaGAGTTCTGCCATGCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: WVASSALEGQALLRTLHPVLSLA*SSAMQF Trigger: AAACTGCATGGCAGAACTGCAGGCTAAGGACAATAC...GGGGTGCAGTGTCCTCAGCAGTGCCTGTCCTTCGAGGGCTGAGCTTGCAACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS-3UTR GCA 90 bp | TGGGTTGCAAGCTCAGCCCTCGAAGGACAGGCACTGCTGAGGACACTGCACCCCGACTTTCTCCAGATGTaGTATGATGACCGAGATGTT | + |
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Preference number: 4 (lower is better) Translates to: WVASSALEGQALLRTLHPDFLQM*YDDRDV Trigger: AACATCTCGGTCATCATAGCACATCTGGAGAAAGTC...GGGGTGCAGTGTCCTCAGCAGTGCCTGTCCTTCGAGGGCTGAGCTTGCAACCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS-3UTR GCA 90 bp | GACCGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGCCCTCGAAGGTATTGTCCTTAGCCTaGAGTTCTGCCATGCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: DRTVPLELSPGLQAQPSKVLSLA*SSAMQF Trigger: AAACTGCATGGCAGAACTGCAGGCTAAGGACAATAC...CTTCGAGGGCTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS-3UTR CCA 90 bp | ACTAGTAATGACCGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGAGGACAAGCTGCAGGTaGCCAGCCAGGTTCCTATAC | + |
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Preference number: 4 (lower is better) Translates to: TSNDRTVPLELSPGLQAQRTSCR*PARFLY Trigger: GTATAGGAACCTGGCTGGCCACCTGCAGCTTGTCCT...CTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGGTCATTACTAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031389.12 |
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| CDS-3UTR GCA 90 bp | CCGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGCCCTCGAAGGAGACTTTCTCCAGATGTaGTATGATGACCGAGATGTT | + |
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Preference number: 4 (lower is better) Translates to: PHSPFGVKSWVASSALEGDFLQM*YDDRDV Trigger: AACATCTCGGTCATCATAGCACATCTGGAGAAAGTC...TCCTTCGAGGGCTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS-3UTR GCA 90 bp | AAGTCCTGGGTTGCAAGCTCAGCCCTCGAAGGACAGGCACTGCTGAGGACACTGATGCAGTTTGAGAACTaGTTTAAAACCGTAAGCACG | + |
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Preference number: 4 (lower is better) Translates to: KSWVASSALEGQALLRTLMQFEN*FKTVST Trigger: CGTGCTTACGGTTTTAAAGCAGTTCTCAAACTGCAT...CAGTGTCCTCAGCAGTGCCTGTCCTTCGAGGGCTGAGCTTGCAACCCAGGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS-3UTR GCA 90 bp | CCGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGCCCTCGAAGGAATGCAGTTTGAGAACTaGTTTAAAACCGTAAGCACG | + |
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Preference number: 4 (lower is better) Translates to: PHSPFGVKSWVASSALEGMQFEN*FKTVST Trigger: CGTGCTTACGGTTTTAAAGCAGTTCTCAAACTGCAT...TCCTTCGAGGGCTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| 3UTR CAA 72 bp | ATAAATAACATGACTAGTAATGACCGCACAGTCCCTTaGGAGTTAAGTCCTGGGTTGCAAGCTCAGCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: INNMTSNDRTVP*ELSPGLQAQPS Trigger: CGAGGGCTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGGTCATTACTAGTCATGTTATTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS GCA 90 bp | GGTTCCTATACAGCAAAGCAGCACCAGGGTAGGCTTCGTTGTTCCTaGGGAAGTTGTGTCTGCGCGAATTCCCGTGTGGCATCGGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: GSYTAKQHQGRLRCS*GSCVCANSRVASGA Trigger: AGCTCCCGATGCCACACGGGAATTCGCGCAGACACAACTTCCGCAGGAACAACGAAGCCTACCCTGGTGCTGCTTTGCTGTATAGGAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198463.2 |
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| CDS-3UTR CAA 90 bp | CGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGCCCTCGAAGGACAACACGGCAGCTGTATaGATTCGTCTGCTGACATCC | + |
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Preference number: 5 (lower is better) Translates to: RTVPLELSPGLQAQPSKDNTAAV*IRLLTS Trigger: GGATGTCAGCAGACGAATCAATACAGCTGCCGTGTT...GTCCTTCGAGGGCTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031389.12 |
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| CDS-3UTR CAA 90 bp | ACTAGTAATGACCGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGGTTCTGCCATGCAGTTaGAGAACTGCTTTAAAACCG | + |
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Preference number: 5 (lower is better) Translates to: TSNDRTVPLELSPGLQAQVLPCS*RTALKP Trigger: CGGTTTTAAAGCAGTTCTCAAACTGCATGGCAGAAC...CTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGGTCATTACTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198901.2 |
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| CDS-3UTR CAA 90 bp | ACTAGTAATGACCGCACAGTCCCTTTGGAGTTAAGTCCTGGGTTGCAAGCTCAGAAGATCCTGAGACTCTaGTTTCAAGAGGTCAATTGT | + |
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Preference number: 5 (lower is better) Translates to: TSNDRTVPLELSPGLQAQKILRL*FQEVNC Trigger: ACAATTGACCTCTTGAAACAAGAGTCTCAGGATCTT...CTGAGCTTGCAACCCAGGACTTAACTCCAAAGGGACTGTGCGGTCATTACTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031389.12 |
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| CDS GCA 90 bp | GCAGCTGTATTGATTCGTCTGCTGACATCCCAGATGCCTGCTTTATaGTATAGTTGTTATAAAGATCCTGAGACTCTTGTTTCAAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: AAVLIRLLTSQMPAL*YSCYKDPETLVSRG Trigger: ACCTCTTGAAACAAGAGTCTCAGGATCTTTATAACAACTATAGCATAAAGCAGGCATCTGGGATGTCAGCAGACGAATCAATACAGCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198463.2 |
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| CDS GCA 72 bp | ACAGCAAAGCAGCACCAGGGTAGGCTTCGTTGTTCCTaGGGAAGTTGTGTCTGCGCGAATTCCCGTGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: TAKQHQGRLRCS*GSCVCANSRVA Trigger: TGCCACACGGGAATTCGCGCAGACACAACTTCCGCAGGAACAACGAAGCCTACCCTGGTGCTGCTTTGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198463.2 |
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| CDS GCA 72 bp | AGTCTTCCTTCGATATTGGGGCACCGAAGGACAAGCTaGAGGTGGCCAGCCAGGTTCCTATACAGCAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: SLPSILGHRRTS*RWPARFLYSKA Trigger: TGCTTTGCTGTATAGGAACCTGGCTGGCCACCTGCAGCTTGTCCTTCGGTGCCCCAATATCGAAGGAAGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198463.2 |
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| CDS GCA 72 bp | TCCTTAGCCTGCAGTTCTGCCATGCAGTTTGAGAACTaGTTTAAAACCGTAAGCACGAACACTTTACAATCA | + |
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Preference number: 6 (lower is better) Translates to: SLACSSAMQFEN*FKTVSTNTLQS Trigger: TGATTGTAAAGTGTTCGTGCTTACGGTTTTAAAGCAGTTCTCAAACTGCATGGCAGAACTGCAGGCTAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031389.12 ENSMUST00000198463.2 ENSMUST00000198901.2 |
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| CDS GCA 72 bp | TTGATTCGTCTGCTGACATCCCAGATGCCTGCTTTATaGTATAGTTGTTATAAAGATCCTGAGACTCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: LIRLLTSQMPAL*YSCYKDPETLV Trigger: AACAAGAGTCTCAGGATCTTTATAACAACTATAGCATAAAGCAGGCATCTGGGATGTCAGCAGACGAATCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031389.12 ENSMUST00000198463.2 |
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| CDS CAA 72 bp | GTATTTCCAGGCACAGAAATGTTTAAATTCAGTGGGTaGAAACAGCTGATGTTTGTTAGCCATCTTATCACC | + |
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Preference number: 6 (lower is better) Translates to: VFPGTEMFKFSG*KQLMFVSHLIT Trigger: GGTGATAAGATGGCTAACAAACATCAGCTGTTTCAACCCACTGAATTTAAACATTTCTGTGCCTGGAAATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031389.12 ENSMUST00000198463.2 ENSMUST00000198901.2 |
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| CDS CAA 90 bp | GATTCATCAGTATTTCCAGGCACAGAAATGTTTAAATTCAGTGGGTaGAAACAGCTGATGTTTGTTAGCCATCTTATCACCCAAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: DSSVFPGTEMFKFSG*KQLMFVSHLITQEV Trigger: TACTTCTTGGGTGATAAGATGGCTAACAAACATCAGCTGTTTCAACCCACTGAATTTAAACATTTCTGTGCCTGGAAATACTGATGAATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031389.12 ENSMUST00000198463.2 ENSMUST00000198901.2 |
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