Pregenerated sensors for IL24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026420Ensembl transcript IDs: ENSMUST00000121040.8, ENSMUST00000187650.7, ENSMUST00000188148.2, ENSMUST00000191279.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCAGAACCTGCGGCTTCAACAGCCGGATGCTTGTGATGTCATCCTaGGTTTGCACAGTGTTCTTCACAGTCCAGAAGGCCTCCCACAGT | + |
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Preference number: 1 (lower is better) Translates to: RRTCGFNSRMLVMSS*VCTVFFTVQKASHS Trigger: ACTGTGGGAGGCCTTCTGGACTGTGAAGAACACTGTGCAAACTCAGGATGACATCACAAGCATCCGGCTGTTGAAGCCGCAGGTTCTGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| 3UTR GCA 90 bp | GAAAAGCCTGAGCCAACAACGGGGTCCATGGCCAAGGGTCTGAAGTaGCTTGAGGACAGCAGGGATGTACACAATGCCTTGAAATGGCAT | + |
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Preference number: 1 (lower is better) Translates to: EKPEPTTGSMAKGLK*LEDSRDVHNALKWH Trigger: ATGCCATTTCAAGGCATTGTGTACATCCCTGCTGTCCTCAAGGCACTTCAGACCCTTGGCCATGGACCCCGTTGTTGGCTCAGGCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR GCA 90 bp | GAGCAACCATCCACTGCCCCCATGCTGAGCCAGATCACAGGAAGTGAGGAGGAGGCCAAGGGTCTGAAGTaGCTTGAGGACAGCAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: EQPSTAPMLSQITGSEEEAKGLK*LEDSRD Trigger: ATCCCTGCTGTCCTCAAGGCACTTCAGACCCTTGGC...CTCCTCCTCACTTCCTGTGATCTGGCTCAGCATGGGGGCAGTGGATGGTTGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR GCA 90 bp | GAGCAACCATCCACTGCCCCCATGCTGAGCCAGATCACAGGAAGTGAGGAGGAGCAGGGATGTACACAATaGCTTGAAATGGCATGGAGA | + |
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Preference number: 2 (lower is better) Translates to: EQPSTAPMLSQITGSEEEQGCTQ*LEMAWR Trigger: TCTCCATGCCATTTCAAGGCATTGTGTACATCCCTG...CTCCTCCTCACTTCCTGTGATCTGGCTCAGCATGGGGGCAGTGGATGGTTGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR GCA 90 bp | GCATCCAGGTCAGGAGAATGTCCACTTCCCCAAAGGCTTTCACCAAAGCGACTTCAAAAACCGCTGGTGTaGACTCTCACTAATGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: ASRSGECPLPQRLSPKRLQKPLV*TLTNGK Trigger: CTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTG...AAGTCGCTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTCCTGACCTGGATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| 3UTR CAA 90 bp | ACTTCCCCAAAGGCTTTCACCAAAGCGACTTCTGTATCCAACTGTTaGAATGCTCTGCGGAACAGCAAAAACCGCTGGTGTGCACTCTCA | + |
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Preference number: 2 (lower is better) Translates to: TSPKAFTKATSVSNC*NALRNSKNRWCALS Trigger: TGAGAGTGCACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTTGGTGAAAGCCTTTGGGGAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| 3UTR-3UTR TCA 90 bp | GATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTCCATGGCCAAGGGTCTaGAGTGCCTTGAGGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: DAFMELLVSQINTVSREGPWPRV*SALRTA Trigger: TGCTGTCCTCAAGGCACTTCAGACCCTTGGCCATGG...ACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR GCA 90 bp | AATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGGCCAAGGGTCTGAAGTaGCTTGAGGACAGCAGGGAT | + |
|
Preference number: 2 (lower is better) Translates to: NSDAFMELLVSQINTVSRAKGLK*LEDSRD Trigger: ATCCCTGCTGTCCTCAAGGCACTTCAGACCCTTGGC...CCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGCATGGGGCACTAAATTCTGATGCTTTCATGGAACTTCTGGTCTCACAACAAAGGTGCCATCTATaGCTGTCATTTGGACTGAAG | + |
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Preference number: 2 (lower is better) Translates to: RRHGALNSDAFMELLVSQQRCHL*LSFGLK Trigger: CTTCAGTCCAAATGACAGCCATAGATGGCACCTTTG...TTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATTTAGTGCCCCATGCCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR CCA 90 bp | GATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTCAAAGGTGCCATCTATaGCTGTCATTTGGACTGAAG | + |
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Preference number: 2 (lower is better) Translates to: DAFMELLVSQINTVSREGQRCHL*LSFGLK Trigger: CTTCAGTCCAAATGACAGCCATAGATGGCACCTTTG...ACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR GCA 90 bp | AATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGCGGAGCATCCAAAGGTaGCATCTATGGCTGTCATTT | + |
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Preference number: 2 (lower is better) Translates to: NSDAFMELLVSQINTVSRRSIQR*HLWLSF Trigger: AAATGACAGCCATAGATGGCACCTTTGGATGCTCCG...CCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR-3UTR CCA 90 bp | GTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCTGTGCCTTGAAATGGCATaGAGAGCAAAGGAGGAAGTT | + |
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Preference number: 2 (lower is better) Translates to: VSQINTVSREGDNNLIGLCLEMA*RAKEEV Trigger: AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCA...CAGCCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR CCA 72 bp | AGTGTTCTTCACAGTCCAGAAGGCCTCCCACAGTTCTaGGAGAACCACCCCTGTCACTTGGCAAGACCCAAA | + |
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Preference number: 3 (lower is better) Translates to: SVLHSPEGLPQF*ENHPCHLARPK Trigger: TTTGGGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCCTTCTGGACTGTGAAGAACACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| 3UTR TCA 72 bp | AAATATTTACTGAGCAACCATCCACTGCCCCCATGCTaGGCCAGATCACAGGAAGTGAGGAGGAGGCATGGG | + |
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Preference number: 3 (lower is better) Translates to: KYLLSNHPLPPC*ARSQEVRRRHG Trigger: CCCATGCCTCCTCCTCACTTCCTGTGATCTGGCTCAGCATGGGGGCAGTGGATGGTTGCTCAGTAAATATTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR TCA 72 bp | TGCGGCTTCAACAGCCGGATGCTTGTGATGTCATCCTaGGTTTGCACAGTGTTCTTCACAGTCCAGAAGGCC | + |
|
Preference number: 3 (lower is better) Translates to: CGFNSRMLVMSS*VCTVFFTVQKA Trigger: GGCCTTCTGGACTGTGAAGAACACTGTGCAAACTCAGGATGACATCACAAGCATCCGGCTGTTGAAGCCGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| 3UTR TCA 72 bp | AAGGTGCCATCTATGGCTGTCATTTGGACTGAAGAGTaGGGTCTGAGGAAAAGCCTGAGCCAACAACGGGGT | + |
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Preference number: 3 (lower is better) Translates to: KVPSMAVIWTEE*GLRKSLSQQRG Trigger: ACCCCGTTGTTGGCTCAGGCTTTTCCTCAGACCTCACTCTTCAGTCCAAATGACAGCCATAGATGGCACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR TCA 72 bp | AGTGCCTTGAGGACAGCAGGGATGTACACAATGCCTTaGAATGGCATGGAGAGCAAAGGAGGAAGTTATCCA | + |
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Preference number: 3 (lower is better) Translates to: SALRTAGMYTMP*NGMESKGGSYP Trigger: TGGATAACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTGTCCTCAAGGCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| 3UTR CCA 72 bp | AACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTaGTGTGCACTCTCACTAATGGGAAGCATGGAATTG | + |
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Preference number: 3 (lower is better) Translates to: NCLNALRNSKNR*CALSLMGSMEL Trigger: CAATTCCATGCTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | CCTCCCACAGTTCTGGGAGAACCACCCCTGTCACTTGGCAAGACCCAAATCGGACCGGAGGCTGCTGTGTaGAGGTGGCTGGTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: PPTVLGEPPLSLGKTQIGPEAAV*RWLVLL Trigger: AAGAAGAACCAGCCACCTTCACACAGCAGCCTCCGG...TCCGATTTGGGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS-3UTR GCA 90 bp | CCTCCCACAGTTCTGGGAGAACCACCCCTGTCACTTGGCAAGACCCAAATCGGAAGTGAAGCCGGAGGCTaGTGTGTGAAGGTGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PPTVLGEPPLSLGKTQIGSEAGG*CVKVAG Trigger: ACCAGCCACCTTCACACAGCAGCCTCCGGCTTCACT...TCCGATTTGGGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS-3UTR GCA 90 bp | GAGCAACCATCCACTGCCCCCATGCTGAGCCAGATCACAGGAAGTGAGGAGGAGGGCTGGTTCTTCTTGTaGACAAAAAGTTGGGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: EQPSTAPMLSQITGSEEEGWFFL*TKSWAG Trigger: GCCTGCCCAACTTTTTGTGCACAAGAAGAACCAGCC...CTCCTCCTCACTTCCTGTGATCTGGCTCAGCATGGGGGCAGTGGATGGTTGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000121040.8 |
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| CDS-3UTR GCA 90 bp | GTCCAGAAGGCCTCCCACAGTTCTGGGAGAACCACCCCTGTCACTTGGCAAGACGGCTGGTTCTTCTTGTaGACAAAAAGTTGGGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VQKASHSSGRTTPVTWQDGWFFL*TKSWAG Trigger: GCCTGCCCAACTTTTTGTGCACAAGAAGAACCAGCC...GTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCCTTCTGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS-3UTR TCA 90 bp | GGGTCCATGGCCAAGGGTCTGAAGTGCCTTGAGGACAGCAGGGATGTACACAATACAGCCGGATGCTTGTaGTGTCATCCTGAGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: GSMAKGLKCLEDSRDVHNTAGCL*CHPEFA Trigger: TGCAAACTCAGGATGACATCACAAGCATCCGGCTGT...ATTGTGTACATCCCTGCTGTCCTCAAGGCACTTCAGACCCTTGGCCATGGACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CCA 90 bp | GAGCAACCATCCACTGCCCCCATGCTGAGCCAGATCACAGGAAGTGAGGAGGAGTCAAGCCCTGGCACTTaGTTCCAAAGAAGAAGGATT | + |
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Preference number: 4 (lower is better) Translates to: EQPSTAPMLSQITGSEEESSPGT*FQRRRI Trigger: AATCCTTCTTCTTTGGAACCAAGTGCCAGGGCTTGA...CTCCTCCTCACTTCCTGTGATCTGGCTCAGCATGGGGGCAGTGGATGGTTGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CCA 90 bp | TCCAGAAGGCCTCCCACAGTTCTGGGAGAACCACCCCTGTCACTTGGCAAGACCTCAAGCCCTGGCACTTaGTTCCAAAGAAGAAGGATT | + |
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Preference number: 4 (lower is better) Translates to: SRRPPTVLGEPPLSLGKTSSPGT*FQRRRI Trigger: AATCCTTCTTCTTTGGAACCAAGTGCCAGGGCTTGA...GGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCCTTCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS-3UTR CCA 90 bp | AGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTGGGCCTCCCACAGTTCTaGGAGAACCACCCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: SDFCIQLFECSAEQQKPLGLPQF*ENHPCH Trigger: GTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCC...CAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | GGAGAATGTCCACTTCCCCAAAGGCTTTCACCAAAGCGACTTCTGTATCCAACTCCGGAGGCTGCTGTGTaGAGGTGGCTGGTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GECPLPQRLSPKRLLYPTPEAAV*RWLVLL Trigger: AAGAAGAACCAGCCACCTTCACACAGCAGCCTCCGG...AGTTGGATACAGAAGTCGCTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | AGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTGCCAAATCGGAACTCTTaGCCCTCAAGCCCTGGCACT | + |
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Preference number: 4 (lower is better) Translates to: SDFCIQLFECSAEQQKPLPNRNS*PSSPGT Trigger: AGTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGG...CAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR GCA 90 bp | AGGAGGCATGGGGCACTAAATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAAGTGAAGCCGGAGGCTaGTGTGTGAAGGTGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: RRHGALNSDAFMELLVSQSEAGG*CVKVAG Trigger: ACCAGCCACCTTCACACAGCAGCCTCCGGCTTCACT...TTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATTTAGTGCCCCATGCCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121040.8 |
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| 3UTR CAA 72 bp | CTTCAACAGCCGGATGCTTGTGATGTCATCCTGAGTTaGCACAGTGTTCTTCACAGTCCAGAAGGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LQQPDACDVILS*HSVLHSPEGLP Trigger: TGGGAGGCCTTCTGGACTGTGAAGAACACTGTGCAAACTCAGGATGACATCACAAGCATCCGGCTGTTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS-3UTR TCA 90 bp | CAGCAGGGATGTACACAATGCCTTGAAATGGCATGGAGAGCAAAGGAGGAAGTTCCAACTCATCTGTGTTaGAGAAAGGGCCAGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QQGCTQCLEMAWRAKEEVPTHLC*RKGQCS Trigger: GGAGCACTGGCCCTTTCTTCAACACAGATGAGTTGG...AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121040.8 |
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| CDS-3UTR TCA 90 bp | AGAATTTCTGCATCCAGGTCAGGAGAATGTCCACTTCCCCAAAGGCTTTCACCACCAACTCATCTGTGTTaGAGAAAGGGCCAGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RISASRSGECPLPQRLSPPTHLC*RKGQCS Trigger: GGAGCACTGGCCCTTTCTTCAACACAGATGAGTTGG...TGGTGAAAGCCTTTGGGGAAGTGGACATTCTCCTGACCTGGATGCAGAAATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | AGGAGGCATGGGGCACTAAATTCTGATGCTTTCATGGAACTTCTGGTCTCACAACCAAATCGGAACTCTTaGCCCTCAAGCCCTGGCACT | + |
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Preference number: 4 (lower is better) Translates to: RRHGALNSDAFMELLVSQPNRNS*PSSPGT Trigger: AGTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGG...TTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATTTAGTGCCCCATGCCTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR GCA 90 bp | ATCCAGGTCAGGAGAATGTCCACTTCCCCAAAGGCTTTCACCAAAGCGACTTCTGGCTGGTTCTTCTTGTaGACAAAAAGTTGGGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: IQVRRMSTSPKAFTKATSGWFFL*TKSWAG Trigger: GCCTGCCCAACTTTTTGTGCACAAGAAGAACCAGCC...AGAAGTCGCTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTCCTGACCTGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CCA 90 bp | GATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGGCCTCCCACAGTTCTaGGAGAACCACCCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: DAFMELLVSQINTVSREGGLPQF*ENHPCH Trigger: GTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCC...ACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR TCA 90 bp | CAGCAGGGATGTACACAATGCCTTGAAATGGCATGGAGAGCAAAGGAGGAAGTTACAGCCGGATGCTTGTaGTGTCATCCTGAGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: QQGCTQCLEMAWRAKEEVTAGCL*CHPEFA Trigger: TGCAAACTCAGGATGACATCACAAGCATCCGGCTGT...AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR TCA 90 bp | AACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTGGTGTGCACTCTCACTAACAGCCGGATGCTTGTaGTGTCATCCTGAGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: NCLNALRNSKNRWCALSLTAGCL*CHPEFA Trigger: TGCAAACTCAGGATGACATCACAAGCATCCGGCTGT...TAGTGAGAGTGCACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | CAGCAGGGATGTACACAATGCCTTGAAATGGCATGGAGAGCAAAGGAGGAAGTTGGCCAGAGTGGAGAATaGCCTCAAGACCTTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: QQGCTQCLEMAWRAKEEVGQSGE*PQDLEF Trigger: AAATTCAAGGTCTTGAGGTCATTCTCCACTCTGGCC...AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CCA 90 bp | AATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGGGCCTCCCACAGTTCTaGGAGAACCACCCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: NSDAFMELLVSQINTVSRGLPQF*ENHPCH Trigger: GTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCC...CCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR TCA 90 bp | CTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCCGGAGGCTGCTGTGTaGAGGTGGCTGGTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LVSQINTVSREGDNNLIGPEAAV*RWLVLL Trigger: AAGAAGAACCAGCCACCTTCACACAGCAGCCTCCGG...CCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121040.8 |
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| CDS-3UTR TCA 90 bp | GCTTTCACCAAAGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCCTTGTGATGTCATCCTaGGTTTGCACAGTGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: AFTKATSVSNCLNALRNSLVMSS*VCTVFF Trigger: GAAGAACACTGTGCAAACTCAGGATGACATCACAAG...GCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTTGGTGAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | CAAAGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGGGCCAGAGTGGAGAATaGCCTCAAGACCTTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: QSDFCIQLFECSAEQQKPGQSGE*PQDLEF Trigger: AAATTCAAGGTCTTGAGGTCATTCTCCACTCTGGCC...CGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CCA 90 bp | ATTTCTGCATCCAGGTCAGGAGAATGTCCACTTCCCCAAAGGCTTTCACCAAAGTCAAGCCCTGGCACTTaGTTCCAAAGAAGAAGGATT | + |
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Preference number: 4 (lower is better) Translates to: ISASRSGECPLPQRLSPKSSPGT*FQRRRI Trigger: AATCCTTCTTCTTTGGAACCAAGTGCCAGGGCTTGA...CTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTCCTGACCTGGATGCAGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| 3UTR CAA 72 bp | AAGGCTTTCACCAAAGCGACTTCTGTATCCAACTGTTaGAATGCTCTGCGGAACAGCAAAAACCGCTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: KAFTKATSVSNC*NALRNSKNRWC Trigger: ACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTTGGTGAAAGCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR TCA 90 bp | CTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCCAAATCGGAACTCTTaGCCCTCAAGCCCTGGCACT | + |
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Preference number: 4 (lower is better) Translates to: LVSQINTVSREGDNNLIGPNRNS*PSSPGT Trigger: AGTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGG...CCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR TCA 90 bp | AGGAGGCATGGGGCACTAAATTCTGATGCTTTCATGGAACTTCTGGTCTCACAACTTGTGATGTCATCCTaGGTTTGCACAGTGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RRHGALNSDAFMELLVSQLVMSS*VCTVFF Trigger: GAAGAACACTGTGCAAACTCAGGATGACATCACAAG...TTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATTTAGTGCCCCATGCCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CCA 90 bp | AATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGACCACCCCTGTCACTTaGCAAGACCCAAATCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: NSDAFMELLVSQINTVSRTTPVT*QDPNRN Trigger: GTTCCGATTTGGGTCTTGCCAAGTGACAGGGGTGGT...CCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CCA 90 bp | GTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCTGACCACCCCTGTCACTTaGCAAGACCCAAATCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: VSQINTVSREGDNNLIGLTTPVT*QDPNRN Trigger: GTTCCGATTTGGGTCTTGCCAAGTGACAGGGGTGGT...CAGCCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR TCA 90 bp | GATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTCTTGTGATGTCATCCTaGGTTTGCACAGTGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: DAFMELLVSQINTVSREGLVMSS*VCTVFF Trigger: GAAGAACACTGTGCAAACTCAGGATGACATCACAAG...ACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR TCA 90 bp | CTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGGGCCAGAGTGGAGAATaGCCTCAAGACCTTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: LVSQINTVSREGDNNLIGGQSGE*PQDLEF Trigger: AAATTCAAGGTCTTGAGGTCATTCTCCACTCTGGCC...CCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR GCA 90 bp | AATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGCAAAAACCGCTGGTGTaGACTCTCACTAATGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: NSDAFMELLVSQINTVSRQKPLV*TLTNGK Trigger: CTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTG...CCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR GCA 90 bp | CTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCAAAAACCGCTGGTGTaGACTCTCACTAATGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LVSQINTVSREGDNNLIGQKPLV*TLTNGK Trigger: CTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTG...CCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | ACAACGGGGTCCATGGCCAAGGGTCTGAAGTGCCTTGAGGACAGCAGGGATGTACCCAAATCGGAACTCTaGACCCTCAAGCCCTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: TTGSMAKGLKCLEDSRDVPKSEL*TLKPWH Trigger: GTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGGG...TACATCCCTGCTGTCCTCAAGGCACTTCAGACCCTTGGCCATGGACCCCGTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | CCTCCCACAGTTCTGGGAGAACCACCCCTGTCACTTGGCAAGACCCAAATCGGACTTGTGCACAAAAAGTaGGGCAGGCTCAGTCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: PPTVLGEPPLSLGKTQIGLVHKK*GRLSQH Trigger: ATGCTGACTGAGCCTGCCCAACTTTTTGTGCACAAG...TCCGATTTGGGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS-3UTR CAA 90 bp | ATTTCTGCATCCAGGTCAGGAGAATGTCCACTTCCCCAAAGGCTTTCACCAAAGCCCAAATCGGAACTCTaGACCCTCAAGCCCTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: ISASRSGECPLPQRLSPKPKSEL*TLKPWH Trigger: GTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGGG...CTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTCCTGACCTGGATGCAGAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CAA 90 bp | ACAACGGGGTCCATGGCCAAGGGTCTGAAGTGCCTTGAGGACAGCAGGGATGTAGATGTCATCCTGAGTTaGCACAGTGTTCTTCACAGT | + |
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Preference number: 5 (lower is better) Translates to: TTGSMAKGLKCLEDSRDVDVILS*HSVLHS Trigger: ACTGTGAAGAACACTGTGCAAACTCAGGATGACATC...TACATCCCTGCTGTCCTCAAGGCACTTCAGACCCTTGGCCATGGACCCCGTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | AGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTGCCCAACTCATCTGTGTaGAAGAAAGGGCCAGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: SDFCIQLFECSAEQQKPLPNSSV*KKGPVL Trigger: GAGCACTGGCCCTTTCTTCAACACAGATGAGTTGGG...CAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS GCA 90 bp | ATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTGGTGTaGACTCTCACTAATGGGAAGCATGGAATTGTCCTTACTGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: IQLFECSAEQQKPLV*TLTNGKHGIVLTGL Trigger: CAGCCCAGTAAGGACAATTCCATGCTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | CAGCAGGGATGTACACAATGCCTTGAAATGGCATGGAGAGCAAAGGAGGAAGTTCTTGTGCACAAAAAGTaGGGCAGGCTCAGTCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: QQGCTQCLEMAWRAKEEVLVHKK*GRLSQH Trigger: ATGCTGACTGAGCCTGCCCAACTTTTTGTGCACAAG...AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121040.8 |
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| CDS-3UTR CAA 90 bp | GCATCCAGGTCAGGAGAATGTCCACTTCCCCAAAGGCTTTCACCAAAGCGACTTGATGTCATCCTGAGTTaGCACAGTGTTCTTCACAGT | + |
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Preference number: 5 (lower is better) Translates to: ASRSGECPLPQRLSPKRLDVILS*HSVLHS Trigger: ACTGTGAAGAACACTGTGCAAACTCAGGATGACATC...AAGTCGCTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTCCTGACCTGGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CAA 90 bp | AAAGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCCTTGTGCACAAAAAGTaGGGCAGGCTCAGTCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: KATSVSNCLNALRNSKNRLVHKK*GRLSQH Trigger: ATGCTGACTGAGCCTGCCCAACTTTTTGTGCACAAG...GCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CAA 90 bp | CAGCAGGGATGTACACAATGCCTTGAAATGGCATGGAGAGCAAAGGAGGAAGTTATGGGAAGCATGGAATaGTCCTTACTGGGCTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: QQGCTQCLEMAWRAKEEVMGSME*SLLGCS Trigger: ACTACAGCCCAGTAAGGACAATTCCATGCTTCCCAT...AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS CCA 90 bp | TCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGCTaGTGTGCACTCTCACTAATGGGAAGCATGGAATTGTCCTTACTG | + |
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Preference number: 5 (lower is better) Translates to: SVSNCLNALRNSKNR*CALSLMGSMELSLL Trigger: CAGTAAGGACAATTCCATGCTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | CTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCCCAAATCGGAACTCTaGACCCTCAAGCCCTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: LVSQINTVSREGDNNLIGPKSEL*TLKPWH Trigger: GTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGGG...CCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | AATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATAAATACGGTTTCCAGGCCCAACTCATCTGTGTaGAAGAAAGGGCCAGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: NSDAFMELLVSQINTVSRPNSSV*KKGPVL Trigger: GAGCACTGGCCCTTTCTTCAACACAGATGAGTTGGG...CCTGGAAACCGTATTTATTTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121040.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGGGATGTACACAATGCCTTGAAATGGCATGGAGAGCAAAGGAGGAAGTTAATGACCTCAAGACCTaGAATTTGGCTATTTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: QQGCTQCLEMAWRAKEEVNDLKT*NLAILL Trigger: CAGCAAAATAGCCAAATTCAAGGTCTTGAGGTCATT...AACTTCCTCCTTTGCTCTCCATGCCATTTCAAGGCATTGTGTACATCCCTGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | AGGAGGCATGGGGCACTAAATTCTGATGCTTTCATGGAACTTCTGGTCTCACAAATGATGACTATGAAGTaGTTGGCCAGAGTGGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: RRHGALNSDAFMELLVSQMMTMK*LARVEN Trigger: ATTCTCCACTCTGGCCAACAACTTCATAGTCATCAT...TTGTGAGACCAGAAGTTCCATGAAAGCATCAGAATTTAGTGCCCCATGCCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | CAAAGCGACTTCTGTATCCAACTGTTTGAATGCTCTGCGGAACAGCAAAAACCGATGATGACTATGAAGTaGTTGGCCAGAGTGGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: QSDFCIQLFECSAEQQKPMMTMK*LARVEN Trigger: ATTCTCCACTCTGGCCAACAACTTCATAGTCATCAT...CGGTTTTTGCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CAA 90 bp | TCCACTTCCCCAAAGGCTTTCACCAAAGCGACTTCTGTATCCAACTGTTTGAATAATGACCTCAAGACCTaGAATTTGGCTATTTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: STSPKAFTKATSVSNCLNNDLKT*NLAILL Trigger: CAGCAAAATAGCCAAATTCAAGGTCTTGAGGTCATT...ATTCAAACAGTTGGATACAGAAGTCGCTTTGGTGAAAGCCTTTGGGGAAGTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191279.2 |
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| CDS-3UTR CAA 90 bp | GTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGCTGTCTGTATCCAACTGTTaGAATGCTCTGCGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: VSQINTVSREGDNNLIGLSVSNC*NALRNS Trigger: GCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGA...CAGCCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS-3UTR CAA 90 bp | CTGGTCTCACAAATAAATACGGTTTCCAGGGAAGGTGACAATAATTTAATAGGGTCTGTATCCAACTGTTaGAATGCTCTGCGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: LVSQINTVSREGDNNLIGSVSNC*NALRNS Trigger: GCTGTTCCGCAGAGCATTCAAACAGTTGGATACAGA...CCCTATTAAATTATTGTCACCTTCCCTGGAAACCGTATTTATTTGTGAGACCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS TCA 72 bp | GAAGAAAGGGCCAGTGCTCCTGCTAGGGTCCTAAAGTaGAGCCGGAGGCTGCTGTGTGAAGGTGGCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: EERASAPARVLK*SRRLLCEGGWF Trigger: GAACCAGCCACCTTCACACAGCAGCCTCCGGCTTCACTTTAGGACCCTAGCAGGAGCACTGGCCCTTTCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000191279.2 |
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| CDS CAA 72 bp | GGCCTCCCACAGTTCTGGGAGAACCACCCCTGTCACTaGGCAAGACCCAAATCGGAACTCTTGACCCTCAAG | + |
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Preference number: 6 (lower is better) Translates to: GLPQFWENHPCH*ARPKSELLTLK Trigger: CTTGAGGGTCAAGAGTTCCGATTTGGGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 ENSMUST00000191279.2 |
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| CDS TCA 72 bp | GAATCTGTAGTCCCCAACTCATCTAGGGTCCTAAAGTaGAGCCGGAGGCTGCTGTGTGAAGGTGGCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: ESVVPNSSRVLK*SRRLLCEGGWF Trigger: GAACCAGCCACCTTCACACAGCAGCCTCCGGCTTCACTTTAGGACCCTAGATGAGTTGGGGACTACAGATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188148.2 |
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| CDS TCA 72 bp | ACCCCTGTCACTTGGCAAGACCCAAATCGGAACTCTTaGCCCTCAAGCCCTGGCACTTGGTTCCAAAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: TPVTWQDPNRNS*PSSPGTWFQRR Trigger: TCTTCTTTGGAACCAAGTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTTGGGTCTTGCCAAGTGACAGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 ENSMUST00000191279.2 |
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| CDS GCA 72 bp | TTTGAATGCTCTGCGGAACAGCAAAAACCGCTGGTGTaGACTCTCACTAATGGGAAGCATGGAATTGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: FECSAEQQKPLV*TLTNGKHGIVL Trigger: AAGGACAATTCCATGCTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTGCTGTTCCGCAGAGCATTCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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| CDS CAA 90 bp | GAATTGTCCTTACTGGGCTGTAGTTGTGACATGATGACTATGAAGTaGTTGGCCAGAGTGGAGAATGACCTCAAGACCTTGAATTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ELSLLGCSCDMMTMK*LARVENDLKTLNLA Trigger: AGCCAAATTCAAGGTCTTGAGGTCATTCTCCACTCTGGCCAACAACTTCATAGTCATCATGTCACAACTACAGCCCAGTAAGGACAATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000121040.8 ENSMUST00000187650.7 |
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