RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL22RA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039760

Ensembl transcript IDs: ENSMUST00000036564.8

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGGAACTCTCTATGCAGACCAGGTTGGCCCAAAAGTCAGAGATCTaGCTGATTCTGCCTTTCAATGCTGGGATTAAAGATGTGCCTTAC +
Preference number: 1 (lower is better)
Translates to: LELSMQTRLAQKSEI*LILPFNAGIKDVPY
Trigger: GTAAGGCACATCTTTAATCCCAGCATTGAAAGGCAGAATCAGTCAGATCTCTGACTTTTGGGCCAACCTGGTCTGCATAGAGAGTTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 90 bp CCAACTCTCATTCTGTGGACAGAGAGGCCACTTTGCCTGAATGGCTaGGTTATCACTGTGGCTTATATGTTTCTTCTGTCTTTGCTGCTG +
Preference number: 1 (lower is better)
Translates to: PTLILWTERPLCLNG*VITVAYMFLLSLLL
Trigger: CAGCAGCAAAGACAGAAGAAACATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 90 bp TCTCCAGCCCAACTCTCATTCTGTGGACAGAGAGGCCACTTTGCCTaGATGGCTGAGTTATCACTGTGGCTTATATGTTTCTTCTGTCTT +
Preference number: 1 (lower is better)
Translates to: SPAQLSFCGQRGHFA*MAELSLWLICFFCL
Trigger: AAGACAGAAGAAACATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTGGGCTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CCA 90 bp CAGCCCAACTCTCATTCTGTGGACAGAGAGGCCACTTTGCCTGAATaGCTGAGTTATCACTGTGGCTTATATGTTTCTTCTGTCTTTGCT +
Preference number: 1 (lower is better)
Translates to: QPNSHSVDREATLPE*LSYHCGLYVSSVFA
Trigger: AGCAAAGACAGAAGAAACATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTGGGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CAA 90 bp CAGTGTCTCCAGCCCAACTCTCATTCTGTGGACAGAGAGGCCACTTaGCCTGAATGGCTGAGTTATCACTGTGGCTTATATGTTTCTTCT +
Preference number: 2 (lower is better)
Translates to: QCLQPNSHSVDREAT*PEWLSYHCGLYVSS
Trigger: AGAAGAAACATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTGGGCTGGAGACACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR CCA 90 bp ACACACAGGACAGCCAGGACAATGCTCTTGCTTTTCACATGTCTCTTATGTTCTGTCAAGGTTCCTGTATaGACTCCAGTGTCTCCAGCC +
Preference number: 2 (lower is better)
Translates to: THRTARTMLLLFTCLLCSVKVPV*TPVSPA
Trigger: GGCTGGAGACACTGGAGTCCATACAGGAACCTTGAC...AGAACATAAGAGACATGTGAAAAGCAAGAGCATTGTCCTGGCTGTCCTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR TCA 90 bp TTTAAGCATCCACTGTGTGCCTTTGGCTTCAAGTCAAGGTTCCTGTATGGACTCAGTCAGAGATCTGACTaGTTCTGCCTTTCAATGCTG +
Preference number: 2 (lower is better)
Translates to: FKHPLCAFGFKSRFLYGLSQRSD*FCLSML
Trigger: CAGCATTGAAAGGCAGAATCAGTCAGATCTCTGACT...GAGTCCATACAGGAACCTTGACTTGAAGCCAAAGGCACACAGTGGATGCTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR CCA 90 bp CTAAGCTCAAGAGCTAGAGAAAGGCTTAGAAAAGCTGGTCACTTTTTGAGCCTTCCAACTCTCATTCTGTaGACAGAGAGGCCACTTTGC +
Preference number: 2 (lower is better)
Translates to: LSSRARERLRKAGHFLSLPTLIL*TERPLC
Trigger: GCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTGG...AAGGCTCAAAAAGTGACCAGCTTTTCTAAGCCTTTCTCTAGCTCTTGAGCTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CAA 90 bp TTTCCTTATAATCTCAGAAATAATTTAAGCATCCACTGTGTGCCTTaGGCTTCAAGTCAAGGTTCCTGTATGGACTCCAGTGTCTCCAGC +
Preference number: 2 (lower is better)
Translates to: FPYNLRNNLSIHCVP*ASSQGSCMDSSVSS
Trigger: GCTGGAGACACTGGAGTCCATACAGGAACCTTGACTTGAAGCCAAAGGCACACAGTGGATGCTTAAATTATTTCTGAGATTATAAGGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR CCA 90 bp CCTTATAATCTCAGAAATAATTTAAGCATCCACTGTGTGCCTTTGGCTTCAAGTGCTGAGTTATCACTGTaGCTTATATGTTTCTTCTGT +
Preference number: 2 (lower is better)
Translates to: PYNLRNNLSIHCVPLASSAELSL*LICFFC
Trigger: ACAGAAGAAACATATAAGCCACAGTGATAACTCAGC...ACTTGAAGCCAAAGGCACACAGTGGATGCTTAAATTATTTCTGAGATTATAAGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR GCA 72 bp CTCATTGTGTGGCCCTGGCTAGCCTGGAACTCTCTATaGAGACCAGGTTGGCCCAAAAGTCAGAGATCTGAC +
Preference number: 3 (lower is better)
Translates to: LIVWPWLAWNSL*RPGWPKSQRSD
Trigger: GTCAGATCTCTGACTTTTGGGCCAACCTGGTCTGCATAGAGAGTTCCAGGCTAGCCAGGGCCACACAATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CCA 72 bp TTGATGCATGGTCTCATTGTGTGGCCCTGGCTAGCCTaGAACTCTCTATGCAGACCAGGTTGGCCCAAAAGT +
Preference number: 3 (lower is better)
Translates to: LMHGLIVWPWLA*NSLCRPGWPKS
Trigger: ACTTTTGGGCCAACCTGGTCTGCATAGAGAGTTCCAGGCTAGCCAGGGCCACACAATGAGACCATGCATCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CCA 72 bp CTTATCATGTTGATGCATGGTCTCATTGTGTGGCCCTaGCTAGCCTGGAACTCTCTATGCAGACCAGGTTGG +
Preference number: 3 (lower is better)
Translates to: LIMLMHGLIVWP*LAWNSLCRPGW
Trigger: CCAACCTGGTCTGCATAGAGAGTTCCAGGCTAGCCAGGGCCACACAATGAGACCATGCATCAACATGATAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CCA 72 bp ACTGTGTGCCTTTGGCTTCAAGTCAAGGTTCCTGTATaGACTCCAGTGTCTCCAGCCCAACTCTCATTCTGT +
Preference number: 3 (lower is better)
Translates to: TVCLWLQVKVPV*TPVSPAQLSFC
Trigger: ACAGAATGAGAGTTGGGCTGGAGACACTGGAGTCCATACAGGAACCTTGACTTGAAGCCAAAGGCACACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 72 bp TGCAGACCAGGTTGGCCCAAAAGTCAGAGATCTGACTaGTTCTGCCTTTCAATGCTGGGATTAAAGATGTGC +
Preference number: 3 (lower is better)
Translates to: CRPGWPKSQRSD*FCLSMLGLKMC
Trigger: GCACATCTTTAATCCCAGCATTGAAAGGCAGAATCAGTCAGATCTCTGACTTTTGGGCCAACCTGGTCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 72 bp GAGCTAGAGAAAGGCTTAGAAAAGCTGGTCACTTTTTaGGCCTTAGGCCACCTGATCATTGCTCAGGAGATG +
Preference number: 3 (lower is better)
Translates to: ELEKGLEKLVTF*ALGHLIIAQEM
Trigger: CATCTCCTGAGCAATGATCAGGTGGCCTAAGGCTCAAAAAGTGACCAGCTTTTCTAAGCCTTTCTCTAGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR CAA 90 bp CTAAGCTCAAGAGCTAGAGAAAGGCTTAGAAAAGCTGGTCACTTTTTGAGCCTTTCTATGCAGACCAGGTaGGCCCAAAAGTCAGAGATC +
Preference number: 3 (lower is better)
Translates to: LSSRARERLRKAGHFLSLSMQTR*AQKSEI
Trigger: GATCTCTGACTTTTGGGCCAACCTGGTCTGCATAGA...AAGGCTCAAAAAGTGACCAGCTTTTCTAAGCCTTTCTCTAGCTCTTGAGCTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 72 bp CAACTCTCATTCTGTGGACAGAGAGGCCACTTTGCCTaGATGGCTGAGTTATCACTGTGGCTTATATGTTTC +
Preference number: 3 (lower is better)
Translates to: QLSFCGQRGHFA*MAELSLWLICF
Trigger: GAAACATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR CAA 90 bp CTCTATGCAGACCAGGTTGGCCCAAAAGTCAGAGATCTGACTGATTCTGCCTTTCTGACAAAGAAATCCTaGAAAAGTGTGGGTAGACAT +
Preference number: 3 (lower is better)
Translates to: LYADQVGPKVRDLTDSAFLTKKS*KSVGRH
Trigger: ATGTCTACCCACACTTTTCAAGGATTTCTTTGTCAG...AAAGGCAGAATCAGTCAGATCTCTGACTTTTGGGCCAACCTGGTCTGCATAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 72 bp TCTATGCAGACCAGGTTGGCCCAAAAGTCAGAGATCTaGCTGATTCTGCCTTTCAATGCTGGGATTAAAGAT +
Preference number: 3 (lower is better)
Translates to: SMQTRLAQKSEI*LILPFNAGIKD
Trigger: ATCTTTAATCCCAGCATTGAAAGGCAGAATCAGTCAGATCTCTGACTTTTGGGCCAACCTGGTCTGCATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CCA 72 bp TCTCATTCTGTGGACAGAGAGGCCACTTTGCCTGAATaGCTGAGTTATCACTGTGGCTTATATGTTTCTTCT +
Preference number: 3 (lower is better)
Translates to: SHSVDREATLPE*LSYHCGLYVSS
Trigger: AGAAGAAACATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CCA 72 bp AACATTTCTATCTTAACATCTTATCATGTTGATGCATaGTCTCATTGTGTGGCCCTGGCTAGCCTGGAACTC +
Preference number: 3 (lower is better)
Translates to: NISILTSYHVDA*SHCVALASLEL
Trigger: GAGTTCCAGGCTAGCCAGGGCCACACAATGAGACCATGCATCAACATGATAAGATGTTAAGATAGAAATGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR-3UTR CAA 90 bp AAACGTAAGAAGACAGACGTACCGACTATACTTTTCAGAGTTATATTTTGGAGCGACAGAGAGGCCACTTaGCCTGAATGGCTGAGTTAT +
Preference number: 3 (lower is better)
Translates to: KRKKTDVPTILFRVIFWSDREAT*PEWLSY
Trigger: ATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTC...GCTCCAAAATATAACTCTGAAAAGTATAGTCGGTACGTCTGTCTTCTTACGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR GCA 72 bp TTTTCTGAACACACAGGACAGCCAGGACAATGCTCTTaGTTTTCACATGTCTCTTATGTTCTTAATGGTCTG +
Preference number: 3 (lower is better)
Translates to: FSEHTGQPGQCS*FSHVSYVLNGL
Trigger: CAGACCATTAAGAACATAAGAGACATGTGAAAAGCAAGAGCATTGTCCTGGCTGTCCTGTGTGTTCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR GCA 72 bp CCAGTGTTTTCTGAACACACAGGACAGCCAGGACAATaGTCTTGCTTTTCACATGTCTCTTATGTTCTTAAT +
Preference number: 3 (lower is better)
Translates to: PVFSEHTGQPGQ*SCFSHVSYVLN
Trigger: ATTAAGAACATAAGAGACATGTGAAAAGCAAGAGCATTGTCCTGGCTGTCCTGTGTGTTCAGAAAACACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR TCA 72 bp AATAATTCAAAAATAAGAATGAAGGCCAGTGTTTTCTaGACACACAGGACAGCCAGGACAATGCTCTTGCTT +
Preference number: 3 (lower is better)
Translates to: NNSKIRMKASVF*THRTARTMLLL
Trigger: AAGCAAGAGCATTGTCCTGGCTGTCCTGTGTGTTCAGAAAACACTGGCCTTCATTCTTATTTTTGAATTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR GCA 90 bp CCACACATGGTCCTGATTCCCAAAGAGGAGTTATCCTTCTCAAGTCTCACCCTTAGTAGATGCTGTTGTTaGTGGGGAGAGAGCTCCCTG +
Preference number: 4 (lower is better)
Translates to: PHMVLIPKEELSFSSLTLSRCCC*WGESSL
Trigger: CAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACT...AAGGGTGAGACTTGAGAAGGATAACTCCTCTTTGGGAATCAGGACCATGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CAA 72 bp CAGCCCAACTCTCATTCTGTGGACAGAGAGGCCACTTaGCCTGAATGGCTGAGTTATCACTGTGGCTTATAT +
Preference number: 4 (lower is better)
Translates to: QPNSHSVDREAT*PEWLSYHCGLY
Trigger: ATATAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGAATGAGAGTTGGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR TCA 90 bp TGCCTTTCAATGCTGGGATTAAAGATGTGCCTTACCACAAGATCTTTATTCTTTTTTCCCACCATGGAGTaGAGCGGGGTGTCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: CLSMLGLKMCLTTRSLFFFPTME*SGVSWS
Trigger: GGACCAGGACACCCCGCTTCACTCCATGGTGGGAAA...AAAGAATAAAGATCTTGTGGTAAGGCACATCTTTAATCCCAGCATTGAAAGGCA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR GCA 90 bp TCTGTGGACAGAGAGGCCACTTTGCCTGAATGGCTGAGTTATCACTGTGGCTTACTCCCTGCTTGCCAGTaGAAAATATTGTGGAAATTT +
Preference number: 4 (lower is better)
Translates to: SVDREATLPEWLSYHCGLLPACQ*KILWKF
Trigger: AAATTTCCACAATATTTTGCACTGGCAAGCAGGGAG...TAAGCCACAGTGATAACTCAGCCATTCAGGCAAAGTGGCCTCTCTGTCCACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CCA 90 bp CTCTATGCAGACCAGGTTGGCCCAAAAGTCAGAGATCTGACTGATTCTGCCTTTTCTCTCCTTGCTTCTTaGGCTTCTTCTGTCAAACAT +
Preference number: 4 (lower is better)
Translates to: LYADQVGPKVRDLTDSAFSLLAS*ASSVKH
Trigger: ATGTTTGACAGAAGAAGCCCAAGAAGCAAGGAGAGA...AAAGGCAGAATCAGTCAGATCTCTGACTTTTGGGCCAACCTGGTCTGCATAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CCA 90 bp CCTTATAATCTCAGAAATAATTTAAGCATCCACTGTGTGCCTTTGGCTTCAAGTAGATGCTGTTGTTGCTaGGGAGAGAGCTCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: PYNLRNNLSIHCVPLASSRCCCC*GESSLL
Trigger: AAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCT...ACTTGAAGCCAAAGGCACACAGTGGATGCTTAAATTATTTCTGAGATTATAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
3UTR CAA 72 bp AATCTCAGAAATAATTTAAGCATCCACTGTGTGCCTTaGGCTTCAAGTCAAGGTTCCTGTATGGACTCCAGT +
Preference number: 4 (lower is better)
Translates to: NLRNNLSIHCVP*ASSQGSCMDSS
Trigger: ACTGGAGTCCATACAGGAACCTTGACTTGAAGCCAAAGGCACACAGTGGATGCTTAAATTATTTCTGAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR TCA 90 bp AGCAAAACTCTGATTGCTGACAACACTCATAAACCAACAATTGCCTTTTGTATTTGGAAATTTCTGGACTaGAATCGGACCTTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: SKTLIADNTHKPTIAFCIWKFLD*NRTFWG
Trigger: GCCCCAGAAGGTCCGATTTCAGTCCAGAAATTTCCA...AATACAAAAGGCAATTGTTGGTTTATGAGTGTTGTCAGCAATCAGAGTTTTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR GCA 90 bp AAACGTAAGAAGACAGACGTACCGACTATACTTTTCAGAGTTATATTTTGGAGCACTGCACAAAGTAGATaGTGTTGTTGCTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: KRKKTDVPTILFRVIFWSTAQSR*CCCWGE
Trigger: CTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGT...GCTCCAAAATATAACTCTGAAAAGTATAGTCGGTACGTCTGTCTTCTTACGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CCA 90 bp CCTTATAATCTCAGAAATAATTTAAGCATCCACTGTGTGCCTTTGGCTTCAAGTGGTCTAAGGTTTCATTaGTCAGGTCACAGAAGAGCG +
Preference number: 4 (lower is better)
Translates to: PYNLRNNLSIHCVPLASSGLRFH*SGHRRA
Trigger: CGCTCTTCTGTGACCTGACCAATGAAACCTTAGACC...ACTTGAAGCCAAAGGCACACAGTGGATGCTTAAATTATTTCTGAGATTATAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CCA 90 bp GTTTCTTCTGTCTTTGCTGCTGAAAAATATATGCTGCATTTAGACAACATAGGTCTGTCAAACATGGGCTaGTACATTTCAGCCACTACG +
Preference number: 4 (lower is better)
Translates to: VSSVFAAEKYMLHLDNIGLSNMG*YISATT
Trigger: CGTAGTGGCTGAAATGTACCAGCCCATGTTTGACAG...ACCTATGTTGTCTAAATGCAGCATATATTTTTCAGCAGCAAAGACAGAAGAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR GCA 90 bp GAAAATCAAAACAGAAGTTTAGTAAGCTGTTCTAGGCAGAAGACATCCCGTTCTTGGTTGTATTTCTGTTaGACTGCTCAAGAGTATGAT +
Preference number: 4 (lower is better)
Translates to: ENQNRSLVSCSRQKTSRSWLYFC*TAQEYD
Trigger: ATCATACTCTTGAGCAGTGCAACAGAAATACAACCA...AGAACGGGATGTCTTCTGCCTAGAACAGCTTACTAAACTTCTGTTTTGATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CCA 90 bp GTTTCTTCTGTCTTTGCTGCTGAAAAATATATGCTGCATTTAGACAACATAGGTTTCTTCTGTCAAACATaGGCTGGTACATTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: VSSVFAAEKYMLHLDNIGFFCQT*AGTFQP
Trigger: TGGCTGAAATGTACCAGCCCATGTTTGACAGAAGAA...ACCTATGTTGTCTAAATGCAGCATATATTTTTCAGCAGCAAAGACAGAAGAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CCA 90 bp TCATCACCCTCCCGTAATACAGCTCGTATGGGTCTAAGGTTTCATTaGTCAGGTCACAGAAGAGCGCCGTGGTCCCCCAGCAGTCAACTT +
Preference number: 5 (lower is better)
Translates to: SSPSRNTARMGLRFH*SGHRRAPWSPSSQL
Trigger: AAGTTGACTGCTGGGGGACCACGGCGCTCTTCTGTGACCTGACCAATGAAACCTTAGACCCATACGAGCTGTATTACGGGAGGGTGATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS GCA 90 bp CTTCCCATTGGCTCTGTCCATACATCTTGTACTGCACAAAGTAGATaGTGTTGTTGCTGGGGAGAGAGCTCCCTGCTTGCCAGTGCAAAA +
Preference number: 5 (lower is better)
Translates to: LPIGSVHTSCTAQSR*CCCWGESSLLASAK
Trigger: TTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGTATGGACAGAGCCAATGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS GCA 90 bp GGCTCTGTCCATACATCTTGTACTGCACAAAGTAGATGCTGTTGTTaGTGGGGAGAGAGCTCCCTGCTTGCCAGTGCAAAATATTGTGGA +
Preference number: 5 (lower is better)
Translates to: GSVHTSCTAQSRCCC*WGESSLLASAKYCG
Trigger: TCCACAATATTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGTATGGACAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS GCA 90 bp GTACTGCACAAAGTAGATGCTGTTGTTGCTGGGGAGAGAGCTCCCTaGTTGCCAGTGCAAAATATTGTGGAAATTTCTGGACTGAAATCG +
Preference number: 5 (lower is better)
Translates to: VLHKVDAVVAGERAP*LPVQNIVEISGLKS
Trigger: CGATTTCAGTCCAGAAATTTCCACAATATTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CCA 90 bp TCTGTCCATACATCTTGTACTGCACAAAGTAGATGCTGTTGTTGCTaGGGAGAGAGCTCCCTGCTTGCCAGTGCAAAATATTGTGGAAAT +
Preference number: 5 (lower is better)
Translates to: SVHTSCTAQSRCCCC*GESSLLASAKYCGN
Trigger: ATTTCCACAATATTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGTATGGACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CCA 90 bp TTCTGTCAAACATGGGCTGGTACATTTCAGCCACTACGCAGTAGCTaGAATGAGGTATCAGACCTTCAATTTCAACAGCTCTCTGAGTTC +
Preference number: 5 (lower is better)
Translates to: FCQTWAGTFQPLRSS*NEVSDLQFQQLSEF
Trigger: GAACTCAGAGAGCTGTTGAAATTGAAGGTCTGATACCTCATTCCAGCTACTGCGTAGTGGCTGAAATGTACCAGCCCATGTTTGACAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CAA 90 bp GAAAATCAAAACAGAAGTTTAGTAAGCTGTTCTAGGCAGAAGACATCCCGTTCTAGATACACGAGCTGGTaGTATTTCTGTTGCACTGCT +
Preference number: 5 (lower is better)
Translates to: ENQNRSLVSCSRQKTSRSRYTSW*YFCCTA
Trigger: AGCAGTGCAACAGAAATACAACCAGCTCGTGTATCT...AGAACGGGATGTCTTCTGCCTAGAACAGCTTACTAAACTTCTGTTTTGATTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CAA 90 bp AGCAAAACTCTGATTGCTGACAACACTCATAAACCAACAATTGCCTTTTGTATTAACTTTATCTTCCCATaGGCTCTGTCCATACATCTT +
Preference number: 5 (lower is better)
Translates to: SKTLIADNTHKPTIAFCINFIFP*ALSIHL
Trigger: AAGATGTATGGACAGAGCCAATGGGAAGATAAAGTT...AATACAAAAGGCAATTGTTGGTTTATGAGTGTTGTCAGCAATCAGAGTTTTGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS-3UTR CAA 90 bp TGCCTTTCAATGCTGGGATTAAAGATGTGCCTTACCACAAGATCTTTATTCTTTTCCTTCTCTAGTGAATaGTTGATTGTGAAAACTCTG +
Preference number: 5 (lower is better)
Translates to: CLSMLGLKMCLTTRSLFFSFSSE*LIVKTL
Trigger: CAGAGTTTTCACAATCAACAATTCACTAGAGAAGGA...AAAGAATAAAGATCTTGTGGTAAGGCACATCTTTAATCCCAGCATTGAAAGGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS GCA 72 bp GGCTCTGTCCATACATCTTGTACTGCACAAAGTAGATaGTGTTGTTGCTGGGGAGAGAGCTCCCTGCTTGCC +
Preference number: 6 (lower is better)
Translates to: GSVHTSCTAQSR*CCCWGESSLLA
Trigger: GGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGTATGGACAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CAA 72 bp TCGGACCTTCTGGGGCGTCAGAGATACACGAGCTGGTaGTATTTCTGTTGCACTGCTCAAGAGTATGATGAG +
Preference number: 6 (lower is better)
Translates to: SDLLGRQRYTSW*YFCCTAQEYDE
Trigger: CTCATCATACTCTTGAGCAGTGCAACAGAAATACAACCAGCTCGTGTATCTCTGACGCCCCAGAAGGTCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CAA 72 bp CGCCGTGGTCCCCCAGCAGTCAACTTTATCTTCCCATaGGCTCTGTCCATACATCTTGTACTGCACAAAGTA +
Preference number: 6 (lower is better)
Translates to: RRGPPAVNFIFP*ALSIHLVLHKV
Trigger: TACTTTGTGCAGTACAAGATGTATGGACAGAGCCAATGGGAAGATAAAGTTGACTGCTGGGGGACCACGGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS GCA 72 bp CATACATCTTGTACTGCACAAAGTAGATGCTGTTGTTaGTGGGGAGAGAGCTCCCTGCTTGCCAGTGCAAAA +
Preference number: 6 (lower is better)
Translates to: HTSCTAQSRCCC*WGESSLLASAK
Trigger: TTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CAA 90 bp CTGCACAAAGTAGATGCTGTTGTTGCTGGGGAGAGAGCTCCCTGCTaGCCAGTGCAAAATATTGTGGAAATTTCTGGACTGAAATCGGAC +
Preference number: 6 (lower is better)
Translates to: LHKVDAVVAGERAPC*PVQNIVEISGLKSD
Trigger: GTCCGATTTCAGTCCAGAAATTTCCACAATATTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS TCA 72 bp GCTTGCCAGTGCAAAATATTGTGGAAATTTCTGGACTaGAATCGGACCTTCTGGGGCGTCAGAGATACACGA +
Preference number: 6 (lower is better)
Translates to: ACQCKILWKFLD*NRTFWGVRDTR
Trigger: TCGTGTATCTCTGACGCCCCAGAAGGTCCGATTTCAGTCCAGAAATTTCCACAATATTTTGCACTGGCAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CCA 72 bp TCCCTGCTTGCCAGTGCAAAATATTGTGGAAATTTCTaGACTGAAATCGGACCTTCTGGGGCGTCAGAGATA +
Preference number: 6 (lower is better)
Translates to: SLLASAKYCGNF*TEIGPSGASEI
Trigger: TATCTCTGACGCCCCAGAAGGTCCGATTTCAGTCCAGAAATTTCCACAATATTTTGCACTGGCAAGCAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CCA 72 bp ACATCTTGTACTGCACAAAGTAGATGCTGTTGTTGCTaGGGAGAGAGCTCCCTGCTTGCCAGTGCAAAATAT +
Preference number: 6 (lower is better)
Translates to: TSCTAQSRCCCC*GESSLLASAKY
Trigger: ATATTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTTGTGCAGTACAAGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS CCA 72 bp ACATGGGCTGGTACATTTCAGCCACTACGCAGTAGCTaGAATGAGGTATCAGACCTTCAATTTCAACAGCTC +
Preference number: 6 (lower is better)
Translates to: TWAGTFQPLRSS*NEVSDLQFQQL
Trigger: GAGCTGTTGAAATTGAAGGTCTGATACCTCATTCCAGCTACTGCGTAGTGGCTGAAATGTACCAGCCCATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8
CDS GCA 72 bp AAAGTAGATGCTGTTGTTGCTGGGGAGAGAGCTCCCTaGTTGCCAGTGCAAAATATTGTGGAAATTTCTGGA +
Preference number: 6 (lower is better)
Translates to: KVDAVVAGERAP*LPVQNIVEISG
Trigger: TCCAGAAATTTCCACAATATTTTGCACTGGCAAGCAGGGAGCTCTCTCCCCAGCAACAACAGCATCTACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036564.8