Pregenerated sensors for IL21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027718Ensembl transcript IDs: ENSMUST00000029273.8, ENSMUST00000161015.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACTCCCCTCTCTGTCCATCATTGCTTTGTGAAGGACTGCATCTCTaGTTCAGCTTTCGAGCAGCAAACTCAGCAACCAATGCTAGCACC | + |
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Preference number: 1 (lower is better) Translates to: DSPLCPSLLCEGLHL*FSFRAANSATNAST Trigger: GGTGCTAGCATTGGTTGCTGAGTTTGCTGCTCGAAAGCTGAAGCAGAGATGCAGTCCTTCACAAAGCAATGATGGACAGAGAGGGGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 90 bp | AAGAATAAAACATGGAGACTCCCCTCTCTGTCCATCATTGCTTTGTaGAGGACTGCATCTCTGCTTCAGCTTTCGAGCAGCAAACTCAGC | + |
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Preference number: 1 (lower is better) Translates to: KNKTWRLPSLSIIAL*RTASLLQLSSSKLS Trigger: GCTGAGTTTGCTGCTCGAAAGCTGAAGCAGAGATGCAGTCCTTCACAAAGCAATGATGGACAGAGAGGGGAGTCTCCATGTTTTATTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 90 bp | ATTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTaGTTTCCTCTGAACTCCTATGACCTACAACAACCTCTCTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: IHKENTFSYSINGHN*FPLNSYDLQQPLSL Trigger: AAGAGAGAGAGGTTGTTGTAGGTCATAGGAGTTCAGAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR CAA 90 bp | GAAGCACCAGAAATCCCTGACACGGGAAGCTGGGCTCTTGTTGAGTaGAGATTTTCCATGTTGACAGCATGGAGTCTGTGCAGGGAACCA | + |
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Preference number: 2 (lower is better) Translates to: EAPEIPDTGSWALVE*RFSMLTAWSLCREP Trigger: TGGTTCCCTGCACAGACTCCATGCTGTCAACATGGAAAATCTCAACTCAACAAGAGCCCAGCTTCCCGTGTCAGGGATTTCTGGTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTCCAATGTGTTCCCACCCACAGTGAACAATAATGTCAAAGGACTGGCTGAGTCGTACTTCTCCACTTaGAATCCCAAGAGGCAAGAT | + |
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Preference number: 2 (lower is better) Translates to: RSNVFPPTVNNNVKGLAESYFST*NPKRQD Trigger: ATCTTGCCTCTTGGGATTGCAAGTGGAGAAGTACGA...CTCAGCCAGTCCTTTGACATTATTGTTCACTGTGGGTGGGAACACATTGGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR TCA 90 bp | CTCAATTTAGCCTCTGTGGTTAAAAGATTGGGATGTTCAGTAAAAGTCTGTTTAAGCACCAGAAATCCCTaGCACGGGAAGCTGGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: LNLASVVKRLGCSVKVCLSTRNP*HGKLGS Trigger: AGAGCCCAGCTTCCCGTGTCAGGGATTTCTGGTGCT...TAAACAGACTTTTACTGAACATCCCAATCTTTTAACCACAGAGGCTAAATTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTCCAATGTGTTCCCACCCACAGTGAACAATAATGTCAAAGGACTGGCTGAGAAAACTGTACCTATCTaGAAAGCCTCTCTTGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: RSNVFPPTVNNNVKGLAEKTVPI*KASLVE Trigger: CTCTACAAGAGAGGCTTTCCAGATAGGTACAGTTTT...CTCAGCCAGTCCTTTGACATTATTGTTCACTGTGGGTGGGAACACATTGGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR TCA 90 bp | AGGTCCAATGTGTTCCCACCCACAGTGAACAATAATGTCAAAGGACTGGCTGAGATGTGTCTTAAGTGCTaGACTTGTTTGGATTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: RSNVFPPTVNNNVKGLAEMCLKC*TCLDCF Trigger: AAAGCAATCCAAACAAGTTCAGCACTTAAGACACAT...CTCAGCCAGTCCTTTGACATTATTGTTCACTGTGGGTGGGAACACATTGGACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR GCA 90 bp | AACTGGAACAGAACCTCTGGTCTCTTGGCTCATCTCCTGATTTTGATTTTAAATACAGCATGGAGTCTGTaGAGGGAACCACAATGTCTG | + |
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Preference number: 2 (lower is better) Translates to: NWNRTSGLLAHLLILILNTAWSL*REPQCL Trigger: CAGACATTGTGGTTCCCTGCACAGACTCCATGCTGT...ATTTAAAATCAAAATCAGGAGATGAGCCAAGAGACCAGAGGTTCTGTTCCAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR GCA 90 bp | TTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTGATTTCCTCCCATCCCCCAGGCCATaGTTGGATCTCAGATCCATT | + |
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Preference number: 2 (lower is better) Translates to: FTKKTLSATVLTAITDFLPSPRP*LDLRSI Trigger: AATGGATCTGAGATCCAAGCATGGCCTGGGGGATGG...GAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCTCCATGTTGACAGCATaGAGTCTGTGCAGGGAACCA | + |
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Preference number: 2 (lower is better) Translates to: CLDLRSILTIRNSQSDDTSMLTA*SLCREP Trigger: TGGTTCCCTGCACAGACTCCATGCTGTCAACATGGA...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGTTCCTGTAAGAGTACTCAAAACATTAAAACTCAGACATACGAAGTTCAGACTGGAACAGAACCTCTaGTCTCTTGGCTCATCTCCT | + |
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Preference number: 2 (lower is better) Translates to: GVPVRVLKTLKLRHTKFRLEQNL*SLGSSP Trigger: AGGAGATGAGCCAAGAGACCAGAGGTTCTGTTCCAG...TCTGAACTTCGTATGTCTGAGTTTTAATGTTTTGAGTACTCTTACAGGAACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR TCA 90 bp | AACTGGAACAGAACCTCTGGTCTCTTGGCTCATCTCCTGATTTTGATTTTAAATAAGCTGGGCTCTTGTTaGGTTGAGATTTTCCATGTT | + |
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Preference number: 2 (lower is better) Translates to: NWNRTSGLLAHLLILILNKLGSC*VEIFHV Trigger: AACATGGAAAATCTCAACTCAACAAGAGCCCAGCTT...ATTTAAAATCAAAATCAGGAGATGAGCCAAGAGACCAGAGGTTCTGTTCCAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGTTCCTGTAAGAGTACTCAAAACATTAAAACTCAGACATACGAAGTTCAGAACACCCATAACCACTTaGGGTGAGAGCTACAAACTT | + |
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Preference number: 2 (lower is better) Translates to: GVPVRVLKTLKLRHTKFRTPITT*GESYKL Trigger: AAGTTTGTAGCTCTCACCTCAAGTGGTTATGGGTGT...TCTGAACTTCGTATGTCTGAGTTTTAATGTTTTGAGTACTCTTACAGGAACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR TCA 90 bp | TTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTGATTTCCTCTCCATCATTGCTTTGTaGAGGACTGCATCTCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: FTKKTLSATVLTAITDFLSIIAL*RTASLL Trigger: AAGCAGAGATGCAGTCCTTCACAAAGCAATGATGGA...GAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR GCA 90 bp | TTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTGATTTCCTCTTCTTACTACACCCTTaGCTCTTTAGAAAAACAGTG | + |
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Preference number: 2 (lower is better) Translates to: FTKKTLSATVLTAITDFLFLLHP*LFRKTV Trigger: CACTGTTTTTCTAAAGAGGCAAGGGTGTAGTAAGAA...GAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCTCCACAGGCTTTCATTaGCATCTTCACAAGATTAAA | + |
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Preference number: 2 (lower is better) Translates to: CLDLRSILTIRNSQSDDTSTGFH*HLHKIK Trigger: TTTAATCTTGTGAAGATGGCAATGAAAGCCTGTGGA...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR GCA 90 bp | TTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTGATTTCCTCCAAGCTCTTAGCCTGTaGTGCATTGAATTATTTGTA | + |
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Preference number: 2 (lower is better) Translates to: FTKKTLSATVLTAITDFLQALSL*CIELFV Trigger: TACAAATAATTCAATGCAGCACAGGCTAAGAGCTTG...GAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CCA 90 bp | TTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTGATTTCCTCTTTAACTCAAAAGTGTaGTCAGGTGTTCCTGTAAGA | + |
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Preference number: 2 (lower is better) Translates to: FTKKTLSATVLTAITDFLFNSKV*SGVPVR Trigger: TCTTACAGGAACACCTGACCACACTTTTGAGTTAAA...GAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGTTCCTGTAAGAGTACTCAAAACATTAAAACTCAGACATACGAAGTTCAGAATTGTGACACTTTTCTaGGAATCAGTTAACACTAGT | + |
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Preference number: 2 (lower is better) Translates to: GVPVRVLKTLKLRHTKFRIVTLF*ESVNTS Trigger: ACTAGTGTTAACTGATTCCCAGAAAAGTGTCACAAT...TCTGAACTTCGTATGTCTGAGTTTTAATGTTTTGAGTACTCTTACAGGAACACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 72 bp | ACATGGAGACTCCCCTCTCTGTCCATCATTGCTTTGTaGAGGACTGCATCTCTGCTTCAGCTTTCGAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: TWRLPSLSIIAL*RTASLLQLSSS Trigger: GCTGCTCGAAAGCTGAAGCAGAGATGCAGTCCTTCACAAAGCAATGATGGACAGAGAGGGGAGTCTCCATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR GCA 72 bp | ACTCCCCTCTCTGTCCATCATTGCTTTGTGAAGGACTaGATCTCTGCTTCAGCTTTCGAGCAGCAAACTCAG | + |
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Preference number: 3 (lower is better) Translates to: TPLSVHHCFVKD*ISASAFEQQTQ Trigger: CTGAGTTTGCTGCTCGAAAGCTGAAGCAGAGATGCAGTCCTTCACAAAGCAATGATGGACAGAGAGGGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CAA 90 bp | AGGTCCAATGTGTTCCCACCCACAGTGAACAATAATGTCAAAGGACTGGCTGAGAGAACCTCTGGTCTCTaGGCTCATCTCCTGATTTTG | + |
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Preference number: 3 (lower is better) Translates to: RSNVFPPTVNNNVKGLAERTSGL*AHLLIL Trigger: CAAAATCAGGAGATGAGCCAAGAGACCAGAGGTTCT...CTCAGCCAGTCCTTTGACATTATTGTTCACTGTGGGTGGGAACACATTGGACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 72 bp | AACAGTGTGTCAGGTCCAATGTGTTCCCACCCACAGTaGACAATAATGTCAAAGGACTGGCTGAGTCTTGAG | + |
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Preference number: 3 (lower is better) Translates to: NSVSGPMCSHPQ*TIMSKDWLSLE Trigger: CTCAAGACTCAGCCAGTCCTTTGACATTATTGTTCACTGTGGGTGGGAACACATTGGACCTGACACACTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR GCA 72 bp | CTCTGTCCATCATTGCTTTGTGAAGGACTGCATCTCTaGTTCAGCTTTCGAGCAGCAAACTCAGCAACCAAT | + |
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Preference number: 3 (lower is better) Translates to: LCPSLLCEGLHL*FSFRAANSATN Trigger: ATTGGTTGCTGAGTTTGCTGCTCGAAAGCTGAAGCAGAGATGCAGTCCTTCACAAAGCAATGATGGACAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 72 bp | TCAGCTACAGTATTAACGGCCATAACTGATTTCCTCTaGACTCCTATGACCTACAACAACCTCTCTCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: SATVLTAITDFL*TPMTYNNLSLF Trigger: AAAGAGAGAGAGGTTGTTGTAGGTCATAGGAGTTCAGAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 72 bp | GAAAACACTTTCAGCTACAGTATTAACGGCCATAACTaGTTTCCTCTGAACTCCTATGACCTACAACAACCT | + |
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Preference number: 3 (lower is better) Translates to: ENTFSYSINGHN*FPLNSYDLQQP Trigger: AGGTTGTTGTAGGTCATAGGAGTTCAGAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CAA 90 bp | CTCAATTTAGCCTCTGTGGTTAAAAGATTGGGATGTTCAGTAAAAGTCTGTTTATTGAGATTTTCCATGTaGACAGCATGGAGTCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: LNLASVVKRLGCSVKVCLLRFSM*TAWSLC Trigger: GCACAGACTCCATGCTGTCAACATGGAAAATCTCAA...TAAACAGACTTTTACTGAACATCCCAATCTTTTAACCACAGAGGCTAAATTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCTGGGCTCTTGTTGAGTaGAGATTTTCCATGTTGACA | + |
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Preference number: 3 (lower is better) Translates to: CLDLRSILTIRNSQSDDTWALVE*RFSMLT Trigger: TGTCAACATGGAAAATCTCAACTCAACAAGAGCCCA...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCCAAAGAATGTCACAGTaGGGCAATAAGATGAAGCCA | + |
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Preference number: 3 (lower is better) Translates to: CLDLRSILTIRNSQSDDTQRMSQ*GNKMKP Trigger: TGGCTTCATCTTATTGCCCAACTGTGACATTCTTTG...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR-3UTR CAA 90 bp | CTCAATTTAGCCTCTGTGGTTAAAAGATTGGGATGTTCAGTAAAAGTCTGTTTAGTGAGAGCTACAAACTaGAAAATTCTACTTGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: LNLASVVKRLGCSVKVCLVRATN*KILLGS Trigger: GGAGCCAAGTAGAATTTTCAAGTTTGTAGCTCTCAC...TAAACAGACTTTTACTGAACATCCCAATCTTTTAACCACAGAGGCTAAATTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR TCA 72 bp | CAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATaGTACCACTCCAGGGAAAATAGCTTTGTAGACTTT | + |
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Preference number: 3 (lower is better) Translates to: QIHFNHKKFSKR*YHSRENSFVDF Trigger: AAAGTCTACAAAGCTATTTTCCCTGGAGTGGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR TCA 90 bp | AACTGGAACAGAACCTCTGGTCTCTTGGCTCATCTCCTGATTTTGATTTTAAATCAGGCAGCCTCCTCCTaGGCTGGGCCACGAGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: NWNRTSGLLAHLLILILNQAASS*AGPRGQ Trigger: TTGACCTCGTGGCCCAGCTCAGGAGGAGGCTGCCTG...ATTTAAAATCAAAATCAGGAGATGAGCCAAGAGACCAGAGGTTCTGTTCCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR CAA 72 bp | GAAATCCCTGACACGGGAAGCTGGGCTCTTGTTGAGTaGAGATTTTCCATGTTGACAGCATGGAGTCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: EIPDTGSWALVE*RFSMLTAWSLC Trigger: GCACAGACTCCATGCTGTCAACATGGAAAATCTCAACTCAACAAGAGCCCAGCTTCCCGTGTCAGGGATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR CAA 72 bp | GGAAGCTGGGCTCTTGTTGAGTTGAGATTTTCCATGTaGACAGCATGGAGTCTGTGCAGGGAACCACAATGT | + |
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Preference number: 4 (lower is better) Translates to: GSWALVELRFSM*TAWSLCREPQC Trigger: ACATTGTGGTTCCCTGCACAGACTCCATGCTGTCAACATGGAAAATCTCAACTCAACAAGAGCCCAGCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR TCA 90 bp | AGGTCCAATGTGTTCCCACCCACAGTGAACAATAATGTCAAAGGACTGGCTGAGTTGAGTTTGGCCTTCTaGAAACAGGCAAAAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: RSNVFPPTVNNNVKGLAELSLAF*KQAKAA Trigger: TGCAGCTTTTGCCTGTTTTCAGAAGGCCAAACTCAA...CTCAGCCAGTCCTTTGACATTATTGTTCACTGTGGGTGGGAACACATTGGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR TCA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCCTGTCCCCAAGAAGATaGCTACCAGACAGACAAGGG | + |
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Preference number: 4 (lower is better) Translates to: CLDLRSILTIRNSQSDDTLSPRR*LPDRQG Trigger: CCCTTGTCTGTCTGGTAGTCATCTTCTTGGGGACAG...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR CCA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCTGGGGGCTTGATTTATaGGCCACTGTCCCCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: CLDLRSILTIRNSQSDDTWGLDL*ATVPKK Trigger: CTTCTTGGGGACAGTGGCCCATAAATCAAGCCCCCA...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR TCA 90 bp | TGCTTGGATCTCAGATCCATTTTAACCATAAGAAATTCTCAAAGCGATGATACCATTGTTTCCAGGGTTTaGTGGCTTGAGTTTGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: CLDLRSILTIRNSQSDDTIVSRV*WLEFGL Trigger: AAGGCCAAACTCAAGCCATCAAACCCTGGAAACAAT...GGTATCATCGCTTTGAGAATTTCTTATGGTTAAAATGGATCTGAGATCCAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR GCA 90 bp | GGTGTTCCTGTAAGAGTACTCAAAACATTAAAACTCAGACATACGAAGTTCAGAGGGCATTTAGCTATGTaGTTCTGTTTCTTTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: GVPVRVLKTLKLRHTKFRGHLAM*FCFFPP Trigger: GGGAGGAAAGAAACAGAAGCACATAGCTAAATGCCC...TCTGAACTTCGTATGTCTGAGTTTTAATGTTTTGAGTACTCTTACAGGAACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS-3UTR CCA 90 bp | TTCACAAAGAAAACACTTTCAGCTACAGTATTAACGGCCATAACTGATTTCCTCTTTCTAGGAATTCTTTaGGTGTCCTTTTCTCATACG | + |
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Preference number: 4 (lower is better) Translates to: FTKKTLSATVLTAITDFLFLGIL*VSFSHT Trigger: CGTATGAGAAAAGGACACCCAAAGAATTCCTAGAAA...GAGGAAATCAGTTATGGCCGTTAATACTGTAGCTGAAAGTGTTTTCTTTGTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| 3UTR CAA 72 bp | TTTTCCAAACGATACAAGCTCTTAGCCTGTGCTGCATaGAATTATTTGTACTTCTTGATTAGAAATTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FSKRYKLLACAA*NYLYFLIRNCQ Trigger: CTGACAATTTCTAATCAAGAAGTACAAATAATTCAATGCAGCACAGGCTAAGAGCTTGTATCGTTTGGAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029273.8 |
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| CDS CCA 90 bp | CGAAGTCTAATCAGGAGGCGATCTGGCCCTTGGGGGCTTGATTTATaGGCCACTGTCCCCAAGAAGATGACTACCAGACAGACAAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: RSLIRRRSGPWGLDL*ATVPKKMTTRQTRV Trigger: GACCCTTGTCTGTCTGGTAGTCATCTTCTTGGGGACAGTGGCCCATAAATCAAGCCCCCAAGGGCCAGATCGCCTCCTGATTAGACTTCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS TCA 90 bp | AAGGTGACGAAGTCTAATCAGGAGGCGATCTGGCCCTTGGGGGCTTaGTTTATGGGCCACTGTCCCCAAGAAGATGACTACCAGACAGAC | + |
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Preference number: 5 (lower is better) Translates to: KVTKSNQEAIWPLGA*FMGHCPQEDDYQTD Trigger: GTCTGTCTGGTAGTCATCTTCTTGGGGACAGTGGCCCATAAATCAAGCCCCCAAGGGCCAGATCGCCTCCTGATTAGACTTCGTCACCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS GCA 90 bp | GGTGTCCTTTTCTCATACGAATCACAGGAAGGGCATTTAGCTATGTaGTTCTGTTTCTTTCCTCCCCTCCTGGCAGGCAGCCTCCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: GVLFSYESQEGHLAM*FCFFPPLLAGSLLL Trigger: CAGGAGGAGGCTGCCTGCCAGGAGGGGAGGAAAGAAACAGAAGCACATAGCTAAATGCCCTTCCTGTGATTCGTATGAGAAAAGGACACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS CCA 90 bp | TTCTGTTTCTTTCCTCCCCTCCTGGCAGGCAGCCTCCTCCTGAGCTaGGCCACGAGGTCAATGATGAATGTCTTATTGTTTCCAGGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FCFFPPLLAGSLLLS*ATRSMMNVLLFPGF Trigger: AAACCCTGGAAACAATAAGACATTCATCATTGACCTCGTGGCCCAGCTCAGGAGGAGGCTGCCTGCCAGGAGGGGAGGAAAGAAACAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS CCA 72 bp | ATCAGGAGGCGATCTGGCCCTTGGGGGCTTGATTTATaGGCCACTGTCCCCAAGAAGATGACTACCAGACAG | + |
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Preference number: 6 (lower is better) Translates to: IRRRSGPWGLDL*ATVPKKMTTRQ Trigger: CTGTCTGGTAGTCATCTTCTTGGGGACAGTGGCCCATAAATCAAGCCCCCAAGGGCCAGATCGCCTCCTGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS CCA 72 bp | TTTCCTCCCCTCCTGGCAGGCAGCCTCCTCCTGAGCTaGGCCACGAGGTCAATGATGAATGTCTTATTGTTT | + |
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Preference number: 6 (lower is better) Translates to: FPPLLAGSLLLS*ATRSMMNVLLF Trigger: AAACAATAAGACATTCATCATTGACCTCGTGGCCCAGCTCAGGAGGAGGCTGCCTGCCAGGAGGGGAGGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS TCA 72 bp | AAGTCTAATCAGGAGGCGATCTGGCCCTTGGGGGCTTaGTTTATGGGCCACTGTCCCCAAGAAGATGACTAC | + |
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Preference number: 6 (lower is better) Translates to: KSNQEAIWPLGA*FMGHCPQEDDY Trigger: GTAGTCATCTTCTTGGGGACAGTGGCCCATAAATCAAGCCCCCAAGGGCCAGATCGCCTCCTGATTAGACTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS TCA 72 bp | TTGTTTCCAGGGTTTGATGGCTTGAGTTTGGCCTTCTaGAAACAGGCAAAAGCTGCATGCTCACAGTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: LFPGFDGLSLAF*KQAKAACSQCP Trigger: GGGGCACTGTGAGCATGCAGCTTTTGCCTGTTTTCAGAAGGCCAAACTCAAGCCATCAAACCCTGGAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS GCA 72 bp | TTCTCATACGAATCACAGGAAGGGCATTTAGCTATGTaGTTCTGTTTCTTTCCTCCCCTCCTGGCAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: FSYESQEGHLAM*FCFFPPLLAGS Trigger: GCTGCCTGCCAGGAGGGGAGGAAAGAAACAGAAGCACATAGCTAAATGCCCTTCCTGTGATTCGTATGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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| CDS CAA 72 bp | CTGAGCTGGGCCACGAGGTCAATGATGAATGTCTTATaGTTTCCAGGGTTTGATGGCTTGAGTTTGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LSWATRSMMNVL*FPGFDGLSLAF Trigger: GAAGGCCAAACTCAAGCCATCAAACCCTGGAAACAATAAGACATTCATCATTGACCTCGTGGCCCAGCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029273.8 ENSMUST00000161015.2 |
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