RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027398

Ensembl transcript IDs: ENSMUST00000028881.14

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAGAACAGAATGTGCCATaGTTTCTTGTGACCCTGAGC +
Preference number: 2 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPEQNVP*FLVTLS
Trigger: GCTCAGGGTCACAAGAAACCATGGCACATTCTGTTC...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
3UTR-3UTR TCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAAACACAGGCTCTCTTTaGACAGAATGTGCCATGGTT +
Preference number: 2 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPNTGSL*TECAMV
Trigger: AACCATGGCACATTCTGTTCAAAGAGAGCCTGTGTT...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
3UTR TCA 72 bp CTGTCTTGGCCGAGGACTAAGGAGTCCCCTGGAGATTaGGCTGTCTGCTCATTCACGAAAAGGGAGCTCCTT +
Preference number: 3 (lower is better)
Translates to: LSWPRTKESPGD*AVCSFTKRELL
Trigger: AAGGAGCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCCAAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
3UTR CCA 72 bp AGGAAAACACAGGCTCTCTTTGAACAGAATGTGCCATaGTTTCTTGTGACCCTGAGCGACCTGTCTTGGCCG +
Preference number: 3 (lower is better)
Translates to: RKTQALFEQNVP*FLVTLSDLSWP
Trigger: CGGCCAAGACAGGTCGCTCAGGGTCACAAGAAACCATGGCACATTCTGTTCAAAGAGAGCCTGTGTTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
3UTR TCA 72 bp CCCATCAGAGGCAAGGAGGAAAACACAGGCTCTCTTTaGACAGAATGTGCCATGGTTTCTTGTGACCCTGAG +
Preference number: 3 (lower is better)
Translates to: PIRGKEENTGSL*TECAMVSCDPE
Trigger: CTCAGGGTCACAAGAAACCATGGCACATTCTGTTCAAAGAGAGCCTGTGTTTTCCTCCTTGCCTCTGATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
3UTR-3UTR CAA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAAAACACAGGCTCTCTTaGAACAGAATGTGCCATGGT +
Preference number: 3 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPKHRLS*NRMCHG
Trigger: ACCATGGCACATTCTGTTCAAAGAGAGCCTGTGTTT...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTTCCACACTCTCCAGCTaGAGGGTGGGTGTGCCGTCT +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPSTLSS*RVGVPS
Trigger: AGACGGCACACCCACCCTGCAGCTGGAGAGTGTGGA...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAACTGCTTGTGAGGTGCTaGTGTACCAGTTGGGGAACT +
Preference number: 4 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKLLVRC*CTSWGT
Trigger: AGTTCCCCAACTGGTACATCAGCACCTCACAAGCAG...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAAAAGACACAGGTAGCTaGCACAGCTTCTCCACAGCC +
Preference number: 4 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKKDTGS*HSFSTA
Trigger: GGCTGTGGAGAAGCTGTGGCAGCTACCTGTGTCTTT...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
53% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTCTCATGTCCTCATCCTaGAAGGTCCACGGGAAAGAC +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPLMSSS*KVHGKD
Trigger: GTCTTTCCCGTGGACCTTCCAGGATGAGGACATGAG...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCTCTCCAGCTGCAGGGTaGGTGTGCCGTCTTTCATTA +
Preference number: 4 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSSPAAG*VCRLSL
Trigger: TAATGAAAGACGGCACACCCACCCTGCAGCTGGAGA...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTTGCTGCTGCGAGATTTaGAGCTGGATGCTCTCATCA +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPCCCEI*SWMLSS
Trigger: TGATGAGAGCATCCAGCTTCAAATCTCGCAGCAGCA...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTCTTGTGCTCTGCTTGTaGGGTGCTGATGTACCAGTT +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPLVLCL*GADVPV
Trigger: AACTGGTACATCAGCACCTCACAAGCAGAGCACAAG...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTAGATTTGAAGCTGGATaGTCTCATCAGGACAGCCCA +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPRFEAG*SHQDSP
Trigger: TGGGCTGTCCTGATGAGAGCATCCAGCTTCAAATCT...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCCCAGTTGGGGAACTCTaGAGACTCAAACTCCACTTT +
Preference number: 4 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSPVGEL*RLKLHF
Trigger: AAAGTGGAGTTTGAGTCTGCAGAGTTCCCCAACTGG...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAACACGGATTCCATGGTaGAGTCAATTATGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKTRIPW*SQLCPD
Trigger: GTCAGGACATAATTGACTTCACCATGGAATCCGTGT...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTTTCTTCTTTGGGTATTaGTTGGGATCCACACTCTCC +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPFFFGY*LGSTLS
Trigger: GGAGAGTGTGGATCCCAAGCAATACCCAAAGAAGAA...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTTTCCATCTTCTTCTTTaGGTATTGCTTGGGATCCAC +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPFHLLL*VLLGIH
Trigger: GTGGATCCCAAGCAATACCCAAAGAAGAAGATGGAA...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCCAGGTATTTTGTCGTTaGTTGGTTCTCCTTGTACAA +
Preference number: 4 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSQVFCR*LVLLVQ
Trigger: TTGTACAAGGAGAACCAAGCAACGACAAAATACCTG...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCATCACTGTCAAAAGGTaGCATTTCACAGTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSITVKR*HFTVEF
Trigger: GAACTCAACTGTGAAATGCCACCTTTTGACAGTGAT...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTTATTTTGTCGTTGCTTaGTTCTCCTTGTACAAAGCT +
Preference number: 4 (lower is better)
Translates to: PHTLTARFCSRECCLMSPYFVVA*FSLYKA
Trigger: AGCTTTGTACAAGGAGAACCAAGCAACGACAAAATA...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCACACAGCCACAATGAGTaGTACTGCCTGCCTGAAGCT +
Preference number: 4 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPHSHNE*YCLPEA
Trigger: AGCTTCAGGCAGGCAGTATCACTCATTGTGGCTGTG...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAATCATCATCATCCCATaGGTCACAGAGGATGGGCTC +
Preference number: 4 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPIIIIP*VTEDGL
Trigger: GAGCCCATCCTCTGTGACTCATGGGATGATGATGAT...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR TCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAGTGGCATTTCACAGTTaGGTTCAGGAACAGTTGCCA +
Preference number: 4 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPVAFHS*VQEQLP
Trigger: TGGCAACTGTTCCTGAACTCAACTGTGAAATGCCAC...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR GCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAATGAGTGATACTGCCTaGCTGAAGCTCTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPMSDTA*LKLLLM
Trigger: CATCAACAAGAGCTTCAGGCAGGCAGTATCACTCAT...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCATTCTGTCCATTGAGGTaGAGAGCTTTCAGCTCATAT +
Preference number: 4 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPFCPLR*RAFSSY
Trigger: ATATGAGCTGAAAGCTCTCCACCTCAATGGACAGAA...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CCA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCAGAGAATATCACTTGTTaGTTGATATTCTGTCCATTG +
Preference number: 4 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPENITC*LIFCPL
Trigger: CAATGGACAGAATATCAACCAACAAGTGATATTCTC...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTCCCAGGAAGACAGGCTaGTGCTCTGCTTGTGAGGTG +
Preference number: 5 (lower is better)
Translates to: PHTLTARFCSRECCLMSPPRKTG*CSACEV
Trigger: CACCTCACAAGCAGAGCACAAGCCTGTCTTCCTGGG...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGCCCAGGTCAAAGGTTaGGAAGCAGCCCTTCATCTT +
Preference number: 5 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKAQVKG*EAALHL
Trigger: AAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGGC...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGTGCTGCTGCGAGATTaGAAGCTGGATGCTCTCATC +
Preference number: 5 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKVLLRD*KLDALI
Trigger: GATGAGAGCATCCAGCTTCAAATCTCGCAGCAGCAC...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTGTGCTGATGTACCAGTaGGGGAACTCTGCAGACTCA +
Preference number: 5 (lower is better)
Translates to: PHTLTARFCSRECCLMSPVLMYQ*GNSADS
Trigger: TGAGTCTGCAGAGTTCCCCAACTGGTACATCAGCAC...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS TCA 90 bp GATACTGCCTGCCTGAAGCTCTTGTTGATGTGCTGCTGCGAGATTTaGAGCTGGATGCTCTCATCAGGACAGCCCAGGTCAAAGGTTTGG +
Preference number: 5 (lower is better)
Translates to: DTACLKLLLMCCCEI*SWMLSSGQPRSKVW
Trigger: CCAAACCTTTGACCTGGGCTGTCCTGATGAGAGCATCCAGCTTCAAATCTCGCAGCAGCACATCAACAAGAGCTTCAGGCAGGCAGTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCGGTGGCATTTCACAGTaGAGTTCAGGAACAGTTGCC +
Preference number: 5 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSGGISQ*SSGTVA
Trigger: GGCAACTGTTCCTGAACTCAACTGTGAAATGCCACC...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCTTCTTTGGGTATTGCTaGGGATCCACACTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSFFGYC*GSTLSS
Trigger: GCTGGAGAGTGTGGATCCCAAGCAATACCCAAAGAA...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCAAGGCCACAGGTATTTaGTCGTTGCTTGGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSKATGI*SLLGSP
Trigger: AGGAGAACCAAGCAACGACAAAATACCTGTGGCCTT...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCCTTCTTCTTTGGGTATaGCTTGGGATCCACACTCTC +
Preference number: 5 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSLLLWV*LGIHTL
Trigger: GAGAGTGTGGATCCCAAGCAATACCCAAAGAAGAAG...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 90 bp TCTTCTTCAAAGATGAAGGAAAAGAAGGTGCTCATGTCCTCATCCTaGAAGGTCCACGGGAAAGACACAGGTAGCTGCCACAGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: SSSKMKEKKVLMSSS*KVHGKDTGSCHSFS
Trigger: GGAGAAGCTGTGGCAGCTACCTGTGTCTTTCCCGTGGACCTTCCAGGATGAGGACATGAGCACCTTCTTTTCCTTCATCTTTGAAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAATTGATATTCTGTCCATaGAGGTGGAGAGCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKLIFCP*RWRAFS
Trigger: GCTGAAAGCTCTCCACCTCAATGGACAGAATATCAA...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 90 bp TCAGGACAGCCCAGGTCAAAGGTTTGGAAGCAGCCCTTCATCTTTTaGGGTCCGTCAACTTCAAAGAACAGGTCATTCTCATCACTGTCA +
Preference number: 5 (lower is better)
Translates to: SGQPRSKVWKQPFIF*GPSTSKNRSFSSLS
Trigger: TGACAGTGATGAGAATGACCTGTTCTTTGAAGTTGACGGACCCCAAAAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGGCTGTCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCGTATTTTGTCGTTGCTaGGTTCTCCTTGTACAAAGC +
Preference number: 5 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSVFCRC*VLLVQS
Trigger: GCTTTGTACAAGGAGAACCAAGCAACGACAAAATAC...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTACAGGTATTTTGTCGTaGCTTGGTTCTCCTTGTACA +
Preference number: 5 (lower is better)
Translates to: PHTLTARFCSRECCLMSPTGILS*LGSPCT
Trigger: TGTACAAGGAGAACCAAGCAACGACAAAATACCTGT...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp CCCCACACGTTGACAGCTAGGTTCTGTTCTAGAGAGTGCTGCCTAATGTCCCCTGACTCAAACTCCACTTaGCTCTTGACTTCTATCTTG +
Preference number: 5 (lower is better)
Translates to: PHTLTARFCSRECCLMSPDSNST*LLTSIL
Trigger: CAAGATAGAAGTCAAGAGCAAAGTGGAGTTTGAGTC...AGGGGACATTAGGCAGCACTCTCTAGAACAGAACCTAGCTGTCAACGTGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAAACTCCACTTTGCTCTaGACTTCTATCTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKNSTLL*TSILLK
Trigger: CTTCAACAAGATAGAAGTCAAGAGCAAAGTGGAGTT...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS TCA 90 bp GTGTGCCGTCTTTCATTACACAGGACAGGTATAGATTCTTTCCTTTaGGGCCCAAGGCCACAGGTATTTTGTCGTTGCTTGGTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: VCRLSLHRTGIDSFL*GPRPQVFCRCLVLL
Trigger: AAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATACCTGTCCTGTGTAATGAAAGACGGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGGAGCAATATCACTTGTTGGTaGATATTCTGTCCATTGAGG +
Preference number: 5 (lower is better)
Translates to: GLRSPLEIELSAHSRKGSNITCW*IFCPLR
Trigger: CCTCAATGGACAGAATATCAACCAACAAGTGATATT...GCTCCCTTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp GGCCGAGGACTAAGGAGTCCCCTGGAGATTGAGCTGTCTGCTCATTCACGAAAAGGAGAATATCACTTGTaGGTTGATATTCTGTCCATT +
Preference number: 5 (lower is better)
Translates to: GRGLRSPLEIELSAHSRKGEYHL*VDILSI
Trigger: AATGGACAGAATATCAACCAACAAGTGATATTCTCC...TTTTCGTGAATGAGCAGACAGCTCAATCTCCAGGGGACTCCTTAGTCCTCGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 90 bp CTCATGGAGAATATCACTTGTTGGTTGATATTCTGTCCATTGAGGTaGAGAGCTTTCAGCTCATATGGGTCCGACAGCACGAGGCTTTTT +
Preference number: 5 (lower is better)
Translates to: LMENITCWLIFCPLR*RAFSSYGSDSTRLF
Trigger: AAAAAGCCTCGTGCTGTCGGACCCATATGAGCTGAAAGCTCTCCACCTCAATGGACAGAATATCAACCAACAAGTGATATTCTCCATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 90 bp ATTCTTTCCTTTGAGGCCCAAGGCCACAGGTATTTTGTCGTTGCTTaGTTCTCCTTGTACAAAGCTCATGGAGAATATCACTTGTTGGTT +
Preference number: 5 (lower is better)
Translates to: ILSFEAQGHRYFVVA*FSLYKAHGEYHLLV
Trigger: AACCAACAAGTGATATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCATATAGATTCTTTCCTTaGAGGCCCAAGGCCACAGGT +
Preference number: 5 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPYRFFP*RPKATG
Trigger: ACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATA...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS-3UTR CAA 90 bp TTCATACTCATCAAAGCAATGTGCTGGTGCTTCATTCATAAAAAGTCTCATCCACTCTTGACTTCTATCTaGTTGAAGACAAACCGTTTT +
Preference number: 5 (lower is better)
Translates to: FILIKAMCWCFIHKKSHPLLTSI*LKTNRF
Trigger: AAAACGGTTTGTCTTCAACAAGATAGAAGTCAAGAG...TGGATGAGACTTTTTATGAATGAAGCACCAGCACATTGCTTTGATGAGTATGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp CTGGATGCTCTCATCAGGACAGCCCAGGTCAAAGGTTaGGAAGCAGCCCTTCATCTTTTGGGGTCCGTCAAC +
Preference number: 6 (lower is better)
Translates to: LDALIRTAQVKG*EAALHLLGSVN
Trigger: GTTGACGGACCCCAAAAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGGCTGTCCTGATGAGAGCATCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS TCA 72 bp TGCCTGAAGCTCTTGTTGATGTGCTGCTGCGAGATTTaGAGCTGGATGCTCTCATCAGGACAGCCCAGGTCA +
Preference number: 6 (lower is better)
Translates to: CLKLLLMCCCEI*SWMLSSGQPRS
Trigger: TGACCTGGGCTGTCCTGATGAGAGCATCCAGCTTCAAATCTCGCAGCAGCACATCAACAAGAGCTTCAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp GGCTTGTGCTCTGCTTGTGAGGTGCTGATGTACCAGTaGGGGAACTCTGCAGACTCAAACTCCACTTTGCTC +
Preference number: 6 (lower is better)
Translates to: GLCSACEVLMYQ*GNSADSNSTLL
Trigger: GAGCAAAGTGGAGTTTGAGTCTGCAGAGTTCCCCAACTGGTACATCAGCACCTCACAAGCAGAGCACAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 72 bp AAGATGAAGGAAAAGAAGGTGCTCATGTCCTCATCCTaGAAGGTCCACGGGAAAGACACAGGTAGCTGCCAC +
Preference number: 6 (lower is better)
Translates to: KMKEKKVLMSSS*KVHGKDTGSCH
Trigger: GTGGCAGCTACCTGTGTCTTTCCCGTGGACCTTCCAGGATGAGGACATGAGCACCTTCTTTTCCTTCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp GTGGAGAGCTTTCAGCTCATATGGGTCCGACAGCACGAGGCTTTTTaGTTGTTCATCTCGGAGCCTGTAGTGCAGTTGTCTAATGGGAAC +
Preference number: 6 (lower is better)
Translates to: VESFQLIWVRQHEAF*LFISEPVVQLSNGN
Trigger: GTTCCCATTAGACAACTGCACTACAGGCTCCGAGATGAACAACAAAAAAGCCTCGTGCTGTCGGACCCATATGAGCTGAAAGCTCTCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp GCCCAGGTCAAAGGTTTGGAAGCAGCCCTTCATCTTTaGGGGTCCGTCAACTTCAAAGAACAGGTCATTCTC +
Preference number: 6 (lower is better)
Translates to: AQVKGLEAALHL*GSVNFKEQVIL
Trigger: GAGAATGACCTGTTCTTTGAAGTTGACGGACCCCAAAAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp ATCAGGACAGCCCAGGTCAAAGGTTTGGAAGCAGCCCTTCATCTTTaGGGGTCCGTCAACTTCAAAGAACAGGTCATTCTCATCACTGTC +
Preference number: 6 (lower is better)
Translates to: IRTAQVKGLEAALHL*GSVNFKEQVILITV
Trigger: GACAGTGATGAGAATGACCTGTTCTTTGAAGTTGACGGACCCCAAAAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGGCTGTCCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp GATTTGAAGCTGGATGCTCTCATCAGGACAGCCCAGGTCAAAGGTTaGGAAGCAGCCCTTCATCTTTTGGGGTCCGTCAACTTCAAAGAA +
Preference number: 6 (lower is better)
Translates to: DLKLDALIRTAQVKG*EAALHLLGSVNFKE
Trigger: TTCTTTGAAGTTGACGGACCCCAAAAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGGCTGTCCTGATGAGAGCATCCAGCTTCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp TTGTTGAAGACAAACCGTTTTTCCATCTTCTTCTTTGGGTATTGCTaGGGATCCACACTCTCCAGCTGCAGGGTGGGTGTGCCGTCTTTC +
Preference number: 6 (lower is better)
Translates to: LLKTNRFSIFFFGYC*GSTLSSCRVGVPSF
Trigger: GAAAGACGGCACACCCACCCTGCAGCTGGAGAGTGTGGATCCCAAGCAATACCCAAAGAAGAAGATGGAAAAACGGTTTGTCTTCAACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 72 bp CCCAGGTCAAAGGTTTGGAAGCAGCCCTTCATCTTTTaGGGTCCGTCAACTTCAAAGAACAGGTCATTCTCA +
Preference number: 6 (lower is better)
Translates to: PRSKVWKQPFIF*GPSTSKNRSFS
Trigger: TGAGAATGACCTGTTCTTTGAAGTTGACGGACCCCAAAAGATGAAGGGCTGCTTCCAAACCTTTGACCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp GGTGTGCCGTCTTTCATTACACAGGACAGGTATAGATTCTTTCCTTaGAGGCCCAAGGCCACAGGTATTTTGTCGTTGCTTGGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: GVPSFITQDRYRFFP*RPKATGILSLLGSP
Trigger: AGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATACCTGTCCTGTGTAATGAAAGACGGCACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp ACAAAGCTCATGGAGAATATCACTTGTTGGTTGATATTCTGTCCATaGAGGTGGAGAGCTTTCAGCTCATATGGGTCCGACAGCACGAGG +
Preference number: 6 (lower is better)
Translates to: TKLMENITCWLIFCP*RWRAFSSYGSDSTR
Trigger: CCTCGTGCTGTCGGACCCATATGAGCTGAAAGCTCTCCACCTCAATGGACAGAATATCAACCAACAAGTGATATTCTCCATGAGCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 72 bp TTTGAGGCCCAAGGCCACAGGTATTTTGTCGTTGCTTaGTTCTCCTTGTACAAAGCTCATGGAGAATATCAC +
Preference number: 6 (lower is better)
Translates to: FEAQGHRYFVVA*FSLYKAHGEYH
Trigger: GTGATATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp TTTCCTTTGAGGCCCAAGGCCACAGGTATTTTGTCGTaGCTTGGTTCTCCTTGTACAAAGCTCATGGAGAAT +
Preference number: 6 (lower is better)
Translates to: FPLRPKATGILS*LGSPCTKLMEN
Trigger: ATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp AGATTCTTTCCTTTGAGGCCCAAGGCCACAGGTATTTaGTCGTTGCTTGGTTCTCCTTGTACAAAGCTCATG +
Preference number: 6 (lower is better)
Translates to: RFFPLRPKATGI*SLLGSPCTKLM
Trigger: CATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp GACAGGTATAGATTCTTTCCTTTGAGGCCCAAGGCCACAGGTATTTaGTCGTTGCTTGGTTCTCCTTGTACAAAGCTCATGGAGAATATC +
Preference number: 6 (lower is better)
Translates to: DRYRFFPLRPKATGI*SLLGSPCTKLMENI
Trigger: GATATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATACCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS TCA 72 bp CTTTCATTACACAGGACAGGTATAGATTCTTTCCTTTaGGGCCCAAGGCCACAGGTATTTTGTCGTTGCTTG +
Preference number: 6 (lower is better)
Translates to: LSLHRTGIDSFL*GPRPQVFCRCL
Trigger: CAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATACCTGTCCTGTGTAATGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp ATGGAGAATATCACTTGTTGGTTGATATTCTGTCCATaGAGGTGGAGAGCTTTCAGCTCATATGGGTCCGAC +
Preference number: 6 (lower is better)
Translates to: MENITCWLIFCP*RWRAFSSYGSD
Trigger: GTCGGACCCATATGAGCTGAAAGCTCTCCACCTCAATGGACAGAATATCAACCAACAAGTGATATTCTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp TTTGAGGCCCAAGGCCACAGGTATTTTGTCGTTGCTTGGTTCTCCTaGTACAAAGCTCATGGAGAATATCACTTGTTGGTTGATATTCTG +
Preference number: 6 (lower is better)
Translates to: FEAQGHRYFVVAWFS*YKAHGEYHLLVDIL
Trigger: CAGAATATCAACCAACAAGTGATATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp TGGTTCTCCTTGTACAAAGCTCATGGAGAATATCACTaGTTGGTTGATATTCTGTCCATTGAGGTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: WFSLYKAHGEYH*LVDILSIEVES
Trigger: GCTCTCCACCTCAATGGACAGAATATCAACCAACAAGTGATATTCTCCATGAGCTTTGTACAAGGAGAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp CAAGGCCACAGGTATTTTGTCGTTGCTTGGTTCTCCTaGTACAAAGCTCATGGAGAATATCACTTGTTGGTT +
Preference number: 6 (lower is better)
Translates to: QGHRYFVVAWFS*YKAHGEYHLLV
Trigger: AACCAACAAGTGATATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp TCTTTCATTACACAGGACAGGTATAGATTCTTTCCTTaGAGGCCCAAGGCCACAGGTATTTTGTCGTTGCTT +
Preference number: 6 (lower is better)
Translates to: SFITQDRYRFFP*RPKATGILSLL
Trigger: AAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATACCTGTCCTGTGTAATGAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp TTGGGGAACTCTGCAGACTCAAACTCCACTTTGCTCTaGACTTCTATCTTGTTGAAGACAAACCGTTTTTCC +
Preference number: 6 (lower is better)
Translates to: LGNSADSNSTLL*TSILLKTNRFS
Trigger: GGAAAAACGGTTTGTCTTCAACAAGATAGAAGTCAAGAGCAAAGTGGAGTTTGAGTCTGCAGAGTTCCCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp TATAGATTCTTTCCTTTGAGGCCCAAGGCCACAGGTATTTTGTCGTaGCTTGGTTCTCCTTGTACAAAGCTCATGGAGAATATCACTTGT +
Preference number: 6 (lower is better)
Translates to: YRFFPLRPKATGILS*LGSPCTKLMENITC
Trigger: ACAAGTGATATTCTCCATGAGCTTTGTACAAGGAGAACCAAGCAACGACAAAATACCTGTGGCCTTGGGCCTCAAAGGAAAGAATCTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 90 bp ATGTACCAGTTGGGGAACTCTGCAGACTCAAACTCCACTTTGCTCTaGACTTCTATCTTGTTGAAGACAAACCGTTTTTCCATCTTCTTC +
Preference number: 6 (lower is better)
Translates to: MYQLGNSADSNSTLL*TSILLKTNRFSIFF
Trigger: GAAGAAGATGGAAAAACGGTTTGTCTTCAACAAGATAGAAGTCAAGAGCAAAGTGGAGTTTGAGTCTGCAGAGTTCCCCAACTGGTACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CCA 72 bp TTCAAAGAACAGGTCATTCTCATCACTGTCAAAAGGTaGCATTTCACAGTTGAGTTCAGGAACAGTTGCCAT +
Preference number: 6 (lower is better)
Translates to: FKEQVILITVKR*HFTVEFRNSCH
Trigger: ATGGCAACTGTTCCTGAACTCAACTGTGAAATGCCACCTTTTGACAGTGATGAGAATGACCTGTTCTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14
CDS CAA 72 bp GCAGACTCAAACTCCACTTTGCTCTTGACTTCTATCTaGTTGAAGACAAACCGTTTTTCCATCTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: ADSNSTLLLTSI*LKTNRFSIFFF
Trigger: AAAGAAGAAGATGGAAAAACGGTTTGTCTTCAACAAGATAGAAGTCAAGAGCAAAGTGGAGTTTGAGTCTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028881.14