RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027399

Ensembl transcript IDs: ENSMUST00000028882.2

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCACATGCTGTGCAAGTGACTCAGGGTGAGGAAGGTTCCTGTACATaGTACATACAGACTGTCAGCACTTCCCAAGTGAATAGACTCCCG +
Preference number: 1 (lower is better)
Translates to: AHAVQVTQGEEGSCT*YIQTVSTSQVNRLP
Trigger: CGGGAGTCTATTCACTTGGGAAGTGCTGACAGTCTGTATGTACCATGTACAGGAACCTTCCTCACCCTGAGTCACTTGCACAGCATGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR TCA 90 bp TTAGAATTACAGAGACTCAGCACATGCTGTGCAAGTGACTCAGGGTaGGGAAGGTTCCTGTACATGGTACATACAGACTGTCAGCACTTC +
Preference number: 1 (lower is better)
Translates to: LELQRLSTCCASDSG*GRFLYMVHTDCQHF
Trigger: GAAGTGCTGACAGTCTGTATGTACCATGTACAGGAACCTTCCTCACCCTGAGTCACTTGCACAGCATGTGCTGAGTCTCTGTAATTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR TCA 90 bp CTTTCCATCTTTAGATGGTTGGTGTTAGTTACAGGTGAGACTGAATaGTGTAAGAATACCCAGACAGCTTTAAGGACGGGAGGGAGAAAG +
Preference number: 1 (lower is better)
Translates to: LSIFRWLVLVTGETE*CKNTQTALRTGGRK
Trigger: CTTTCTCCCTCCCGTCCTTAAAGCTGTCTGGGTATTCTTACATCATTCAGTCTCACCTGTAACTAACACCAACCATCTAAAGATGGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR GCA 90 bp AAAATAACAGATAGTATCATATGTCGGGGTGGCTCCACTAGGGTTTaGTCTTCTCTTACAAAGAGGGTAAACATTCATTTAGAATTACAG +
Preference number: 1 (lower is better)
Translates to: KITDSIICRGGSTRV*SSLTKRVNIHLELQ
Trigger: CTGTAATTCTAAATGAATGTTTACCCTCTTTGTAAGAGAAGAGCAAACCCTAGTGGAGCCACCCCGACATATGATACTATCTGTTATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR-3UTR TCA 90 bp TTGGAATCCAGGGGAAACACTGATTACATTCTAGAAAAGAAACTTCAGGTATCACACATGCTGTGCAAGTaGCTCAGGGTGAGGAAGGTT +
Preference number: 2 (lower is better)
Translates to: LESRGNTDYILEKKLQVSHMLCK*LRVRKV
Trigger: AACCTTCCTCACCCTGAGTCACTTGCACAGCATGTG...TGATACCTGAAGTTTCTTTTCTAGAATGTAATCAGTGTTTCCCCTGGATTCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR-3UTR GCA 90 bp AGGACGGGAGGGAGAAAGACTGACTCAATTATCATTTTAGATGCACAAAGTAAAGGCTCCACTAGGGTTTaGTCTTCTCTTACAAAGAGG +
Preference number: 2 (lower is better)
Translates to: RTGGRKTDSIIILDAQSKGSTRV*SSLTKR
Trigger: CCTCTTTGTAAGAGAAGAGCAAACCCTAGTGGAGCC...TTTACTTTGTGCATCTAAAATGATAATTGAGTCAGTCTTTCTCCCTCCCGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR TCA 72 bp AAGTTCTTATACCTTTATCCTACTCAACTGGCATTTTaGAGCCGAAGGTGCACAGTGAGATTGGTCTGTGAA +
Preference number: 3 (lower is better)
Translates to: KFLYLYPTQLAF*SRRCTVRLVCE
Trigger: TTCACAGACCAATCTCACTGTGCACCTTCGGCTTCAAAATGCCAGTTGAGTAGGATAAAGGTATAAGAACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR GCA 72 bp GATAGTATCATATGTCGGGGTGGCTCCACTAGGGTTTaGTCTTCTCTTACAAAGAGGGTAAACATTCATTTA +
Preference number: 3 (lower is better)
Translates to: DSIICRGGSTRV*SSLTKRVNIHL
Trigger: TAAATGAATGTTTACCCTCTTTGTAAGAGAAGAGCAAACCCTAGTGGAGCCACCCCGACATATGATACTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR-3UTR CAA 90 bp AATAACATTCAACAGTCTGTCTCCTTCTTGAGGTCTGTTACAGGAGGATTTCATATGTGTAGAGTCTTTTaGATCCTCCTAAGAATGCCA +
Preference number: 3 (lower is better)
Translates to: NNIQQSVSFLRSVTGGFHMCRVF*ILLRMP
Trigger: TGGCATTCTTAGGAGGATCAAAAAGACTCTACACAT...ATGAAATCCTCCTGTAACAGACCTCAAGAAGGAGACAGACTGTTGAATGTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR-3UTR CAA 90 bp AGGACGGGAGGGAGAAAGACTGACTCAATTATCATTTTAGATGCACAAAGTAAAATTGTCCCCTTCCTTTaGAAAATGACAGCATTAAGT +
Preference number: 3 (lower is better)
Translates to: RTGGRKTDSIIILDAQSKIVPFL*KMTALS
Trigger: ACTTAATGCTGTCATTTTCAAAAGGAAGGGGACAAT...TTTACTTTGTGCATCTAAAATGATAATTGAGTCAGTCTTTCTCCCTCCCGTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
3UTR TCA 72 bp AACTTAAAAATAACATTCAACAGTCTGTCTCCTTCTTaGGGTCTGTTACAGGAGGATTTCATCCAAATGATC +
Preference number: 3 (lower is better)
Translates to: NLKITFNSLSPS*GLLQEDFIQMI
Trigger: GATCATTTGGATGAAATCCTCCTGTAACAGACCTCAAGAAGGAGACAGACTGTTGAATGTTATTTTTAAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR TCA 90 bp TCCTGTACATGGTACATACAGACTGTCAGCACTTCCCAAGTGAATAGACTCCCGTTTTCCAGAAGAAAATaGGGTCGGTCTCACTACCTG +
Preference number: 4 (lower is better)
Translates to: SCTWYIQTVSTSQVNRLPFSRRK*GRSHYL
Trigger: CAGGTAGTGAGACCGACCTCATTTTCTTCTGGAAAA...CGGGAGTCTATTCACTTGGGAAGTGCTGACAGTCTGTATGTACCATGTACAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CCA 90 bp GAAGGTTCCTGTACATGGTACATACAGACTGTCAGCACTTCCCAAGTGAATAGATGTAAGGTGCTGATCTaGGTTGGATGGTCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: EGSCTWYIQTVSTSQVNRCKVLI*VGWSLP
Trigger: TGGAAGAGACCATCCAACCCAGATCAGCACCTTACA...TCTATTCACTTGGGAAGTGCTGACAGTCTGTATGTACCATGTACAGGAACCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CCA 90 bp AGGACGGGAGGGAGAAAGACTGACTCAATTATCATTTTAGATGCACAAAGTAAACTGATCTGGGTTGGATaGTCTCTTCCAGATCATGGG +
Preference number: 4 (lower is better)
Translates to: RTGGRKTDSIIILDAQSKLIWVG*SLPDHG
Trigger: CCCATGATCTGGAAGAGACCATCCAACCCAGATCAG...TTTACTTTGTGCATCTAAAATGATAATTGAGTCAGTCTTTCTCCCTCCCGTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CCA 90 bp AGGACGGGAGGGAGAAAGACTGACTCAATTATCATTTTAGATGCACAAAGTAAAGGTGCTGATCTGGGTTaGATGGTCTCTTCCAGATCA +
Preference number: 4 (lower is better)
Translates to: RTGGRKTDSIIILDAQSKGADLG*MVSSRS
Trigger: TGATCTGGAAGAGACCATCCAACCCAGATCAGCACC...TTTACTTTGTGCATCTAAAATGATAATTGAGTCAGTCTTTCTCCCTCCCGTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CCA 90 bp GAAGGTTCCTGTACATGGTACATACAGACTGTCAGCACTTCCCAAGTGAATAGAACCTGTGATGAGTTTTaGTGTTTCTGGCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: EGSCTWYIQTVSTSQVNRTCDEF*CFWQLL
Trigger: AAGGAGTTGCCAGAAACACCAAAACTCATCACAGGT...TCTATTCACTTGGGAAGTGCTGACAGTCTGTATGTACCATGTACAGGAACCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CCA 90 bp TACAAAGAGGGTAAACATTCATTTAGAATTACAGAGACTCAGCACATGCTGTGCGAGAGAGATGGTCAATaGCAGAACTGTAGTCTTCGT +
Preference number: 4 (lower is better)
Translates to: YKEGKHSFRITETQHMLCERDGQ*QNCSLR
Trigger: ACGAAGACTACAGTTCTGCCATTGACCATCTCTCTC...GCACAGCATGTGCTGAGTCTCTGTAATTCTAAATGAATGTTTACCCTCTTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR TCA 90 bp TTGGAATCCAGGGGAAACACTGATTACATTCTAGAAAAGAAACTTCAGGTATCAGCAAGTCTCATGAAGTaGGCCATAGCTTGCATCATA +
Preference number: 4 (lower is better)
Translates to: LESRGNTDYILEKKLQVSASLMK*AIACII
Trigger: TATGATGCAAGCTATGGCTCACTTCATGAGACTTGC...TGATACCTGAAGTTTCTTTTCTAGAATGTAATCAGTGTTTCCCCTGGATTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR TCA 90 bp AAGAGGGTAAACATTCATTTAGAATTACAGAGACTCAGCACATGCTGTGCAAGTTTAACCAAGTGGTGCTaGGATAGTGTTTGTCCACAT +
Preference number: 4 (lower is better)
Translates to: KRVNIHLELQRLSTCCASLTKWC*DSVCPH
Trigger: ATGTGGACAAACACTATCTCAGCACCACTTGGTTAA...ACTTGCACAGCATGTGCTGAGTCTCTGTAATTCTAAATGAATGTTTACCCTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CCA 90 bp TTGGAATCCAGGGGAAACACTGATTACATTCTAGAAAAGAAACTTCAGGTATCAGAGTTTTGGTGTTTCTaGCAACTCCTTCAGCAACAC +
Preference number: 4 (lower is better)
Translates to: LESRGNTDYILEKKLQVSEFWCF*QLLQQH
Trigger: GTGTTGCTGAAGGAGTTGCCAGAAACACCAAAACTC...TGATACCTGAAGTTTCTTTTCTAGAATGTAATCAGTGTTTCCCCTGGATTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR TCA 90 bp TTGGAATCCAGGGGAAACACTGATTACATTCTAGAAAAGAAACTTCAGGTATCATGTTTGTCCACATCCTaGTATATAGTTTGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: LESRGNTDYILEKKLQVSCLSTS*YIVWLR
Trigger: CCTCAACCAAACTATATATCAGGATGTGGACAAACA...TGATACCTGAAGTTTCTTTTCTAGAATGTAATCAGTGTTTCCCCTGGATTCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS GCA 90 bp GCTGATCTGGGTTGGATGGTCTCTTCCAGATCATGGGTTATGGACTaGAGGTCATCTTCAGTGAAGGTCTCACTGAAACTCAGCCGTCTC +
Preference number: 5 (lower is better)
Translates to: ADLGWMVSSRSWVMD*RSSSVKVSLKLSRL
Trigger: GAGACGGCTGAGTTTCAGTGAGACCTTCACTGAAGATGACCTGCAGTCCATAACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CCA 90 bp ATCTCAAATCACTCTGGTAGGTGTAAGGTGCTGATCTGGGTTGGATaGTCTCTTCCAGATCATGGGTTATGGACTGCAGGTCATCTTCAG +
Preference number: 5 (lower is better)
Translates to: ISNHSGRCKVLIWVG*SLPDHGLWTAGHLQ
Trigger: CTGAAGATGACCTGCAGTCCATAACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTGATTTGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CCA 90 bp TCAGTTTGTATCTCAAATCACTCTGGTAGGTGTAAGGTGCTGATCTaGGTTGGATGGTCTCTTCCAGATCATGGGTTATGGACTGCAGGT +
Preference number: 5 (lower is better)
Translates to: SVCISNHSGRCKVLI*VGWSLPDHGLWTAG
Trigger: ACCTGCAGTCCATAACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTGATTTGAGATACAAACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS TCA 90 bp CTTCATCAGTTTGTATCTCAAATCACTCTGGTAGGTGTAAGGTGCTaGTCTGGGTTGGATGGTCTCTTCCAGATCATGGGTTATGGACTG +
Preference number: 5 (lower is better)
Translates to: LHQFVSQITLVGVRC*SGLDGLFQIMGYGL
Trigger: CAGTCCATAACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTGATTTGAGATACAAACTGATGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS TCA 90 bp AGAGGTTCTCAGAGATACAAACTGATCTGTGCAAGTCTCATGAAGTaGGCCATAGCTTGCATCATAGAAGGATTTCTGATTCAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: RGSQRYKLICASLMK*AIACIIEGFLIQRE
Trigger: CTCTCTCTGAATCAGAAATCCTTCTATGATGCAAGCTATGGCTCACTTCATGAGACTTGCACAGATCAGTTTGTATCTCTGAGAACCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS GCA 90 bp ACATCTTTGACGTTTCAGAGGTTCTCAGAGATACAAACTGATCTGTaGAAGTCTCATGAAGTGAGCCATAGCTTGCATCATAGAAGGATT +
Preference number: 5 (lower is better)
Translates to: TSLTFQRFSEIQTDL*KSHEVSHSLHHRRI
Trigger: AATCCTTCTATGATGCAAGCTATGGCTCACTTCATGAGACTTGCACAGATCAGTTTGTATCTCTGAGAACCTCTGAAACGTCAAAGATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS-3UTR CAA 90 bp AATAACATTCAACAGTCTGTCTCCTTCTTGAGGTCTGTTACAGGAGGATTTCATGAAGTGAGCCATAGCTaGCATCATAGAAGGATTTCT +
Preference number: 5 (lower is better)
Translates to: NNIQQSVSFLRSVTGGFHEVSHS*HHRRIS
Trigger: AGAAATCCTTCTATGATGCAAGCTATGGCTCACTTC...ATGAAATCCTCCTGTAACAGACCTCAAGAAGGAGACAGACTGTTGAATGTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS GCA 72 bp TGGAAGTCTGTCATAGAGGGCAGTCCCCGTGCCAGGTaGACCCGACTTTGTTCTTTGGTGGCAATAAACAGC +
Preference number: 6 (lower is better)
Translates to: WKSVIEGSPRAR*TRLCSLVAINS
Trigger: GCTGTTTATTGCCACCAAAGAACAAAGTCGGGTGCACCTGGCACGGGGACTGCCCTCTATGACAGACTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CAA 72 bp CATAGAGGGCAGTCCCCGTGCCAGGTGCACCCGACTTaGTTCTTTGGTGGCAATAAACAGCTCTGGATAAGC +
Preference number: 6 (lower is better)
Translates to: HRGQSPCQVHPT*FFGGNKQLWIS
Trigger: GCTTATCCAGAGCTGTTTATTGCCACCAAAGAACAAAGTCGGGTGCACCTGGCACGGGGACTGCCCTCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CAA 72 bp CTGAAACTCAGCCGTCTCTTCTTCAGAATCTTCCCGTaGCTTGACGTTGCTGATACTGTCACCCGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: LKLSRLFFRIFP*LDVADTVTRLS
Trigger: GGAGAGCCGGGTGACAGTATCAGCAACGTCAAGCAACGGGAAGATTCTGAAGAAGAGACGGCTGAGTTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CAA 90 bp AAGGTCTCACTGAAACTCAGCCGTCTCTTCTTCAGAATCTTCCCGTaGCTTGACGTTGCTGATACTGTCACCCGGCTCTCCTTGAAGGTG +
Preference number: 6 (lower is better)
Translates to: KVSLKLSRLFFRIFP*LDVADTVTRLSLKV
Trigger: CACCTTCAAGGAGAGCCGGGTGACAGTATCAGCAACGTCAAGCAACGGGAAGATTCTGAAGAAGAGACGGCTGAGTTTCAGTGAGACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CCA 72 bp CACTCTGGTAGGTGTAAGGTGCTGATCTGGGTTGGATaGTCTCTTCCAGATCATGGGTTATGGACTGCAGGT +
Preference number: 6 (lower is better)
Translates to: HSGRCKVLIWVG*SLPDHGLWTAG
Trigger: ACCTGCAGTCCATAACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS TCA 72 bp GGCAACTCCTTCAGCAACACGGGCTGGTCTTCTCCTTaGGCGCTCACGAACAGTTGTGAATCTGAGATTTTT +
Preference number: 6 (lower is better)
Translates to: GNSFSNTGWSSP*ALTNSCESEIF
Trigger: AAAAATCTCAGATTCACAACTGTTCGTGAGCGCTCAAGGAGAAGACCAGCCCGTGTTGCTGAAGGAGTTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS GCA 72 bp GGTTGGATGGTCTCTTCCAGATCATGGGTTATGGACTaGAGGTCATCTTCAGTGAAGGTCTCACTGAAACTC +
Preference number: 6 (lower is better)
Translates to: GWMVSSRSWVMD*RSSSVKVSLKL
Trigger: GAGTTTCAGTGAGACCTTCACTGAAGATGACCTGCAGTCCATAACCCATGATCTGGAAGAGACCATCCAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CCA 72 bp ATCTCAAATCACTCTGGTAGGTGTAAGGTGCTGATCTaGGTTGGATGGTCTCTTCCAGATCATGGGTTATGG +
Preference number: 6 (lower is better)
Translates to: ISNHSGRCKVLI*VGWSLPDHGLW
Trigger: CCATAACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTGATTTGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS TCA 72 bp TTTGTATCTCAAATCACTCTGGTAGGTGTAAGGTGCTaGTCTGGGTTGGATGGTCTCTTCCAGATCATGGGT +
Preference number: 6 (lower is better)
Translates to: FVSQITLVGVRC*SGLDGLFQIMG
Trigger: ACCCATGATCTGGAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTGATTTGAGATACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS GCA 72 bp ACGTTTCAGAGGTTCTCAGAGATACAAACTGATCTGTaGAAGTCTCATGAAGTGAGCCATAGCTTGCATCAT +
Preference number: 6 (lower is better)
Translates to: TFQRFSEIQTDL*KSHEVSHSLHH
Trigger: ATGATGCAAGCTATGGCTCACTTCATGAGACTTGCACAGATCAGTTTGTATCTCTGAGAACCTCTGAAACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CAA 90 bp GAGATACAAACTGATCTGTGCAAGTCTCATGAAGTGAGCCATAGCTaGCATCATAGAAGGATTTCTGATTCAGAGAGAGATGGTCAATGG +
Preference number: 6 (lower is better)
Translates to: EIQTDLCKSHEVSHS*HHRRISDSERDGQW
Trigger: CCATTGACCATCTCTCTCTGAATCAGAAATCCTTCTATGATGCAAGCTATGGCTCACTTCATGAGACTTGCACAGATCAGTTTGTATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CAA 72 bp ACTGATCTGTGCAAGTCTCATGAAGTGAGCCATAGCTaGCATCATAGAAGGATTTCTGATTCAGAGAGAGAT +
Preference number: 6 (lower is better)
Translates to: TDLCKSHEVSHS*HHRRISDSERD
Trigger: ATCTCTCTCTGAATCAGAAATCCTTCTATGATGCAAGCTATGGCTCACTTCATGAGACTTGCACAGATCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS TCA 72 bp CAGAGATACAAACTGATCTGTGCAAGTCTCATGAAGTaGGCCATAGCTTGCATCATAGAAGGATTTCTGATT +
Preference number: 6 (lower is better)
Translates to: QRYKLICASLMK*AIACIIEGFLI
Trigger: AATCAGAAATCCTTCTATGATGCAAGCTATGGCTCACTTCATGAGACTTGCACAGATCAGTTTGTATCTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS CAA 72 bp GCTGAGATAGTGTTTGTCCACATCCTGATATATAGTTaGGTTGAGGGAATCATTCATGACAAACTTCTGCCT +
Preference number: 6 (lower is better)
Translates to: AEIVFVHILIYS*VEGIIHDKLLP
Trigger: AGGCAGAAGTTTGTCATGAATGATTCCCTCAACCAAACTATATATCAGGATGTGGACAAACACTATCTCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2
CDS GCA 72 bp ATAGTTTGGTTGAGGGAATCATTCATGACAAACTTCTaGCTGACGAGCTTCATCAGTTTGTATCTCAAATCA +
Preference number: 6 (lower is better)
Translates to: IVWLRESFMTNF*LTSFISLYLKS
Trigger: TGATTTGAGATACAAACTGATGAAGCTCGTCAGGCAGAAGTTTGTCATGAATGATTCCCTCAACCAAACTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028882.2