Pregenerated sensors for IL19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016524Ensembl transcript IDs: ENSMUST00000016668.13, ENSMUST00000112465.2, ENSMUST00000187410.7, ENSMUST00000187916.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTCAGTCAGTACAATATGCACTACAGCACACCACAAGGTGCACAGCATAGGCCTCTTAGCTATTGCAGGTaGGATCAGAGAGCAGAGACC | + |
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Preference number: 2 (lower is better) Translates to: VSQYNMHYSTPQGAQHRPLSYCR*DQRAET Trigger: GGTCTCTGCTCTCTGATCCCACCTGCAATAGCTAAG...AGGCCTATGCTGTGCACCTTGTGGTGTGCTGTAGTGCATATTGTACTGACTGAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| 3UTR-3UTR TCA 90 bp | GTCAGTCAGTACAATATGCACTACAGCACACCACAAGGTGCACAGCATAGGCCTTGTCTATTGCTCCTATaGTATCTGAGATCTCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: VSQYNMHYSTPQGAQHRPCLLLL*YLRSLN Trigger: GTTGAGAGATCTCAGATATCATAGGAGCAATAGACA...AGGCCTATGCTGTGCACCTTGTGGTGTGCTGTAGTGCATATTGTACTGACTGAC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| CDS-3UTR TCA 90 bp | AGGCTCCAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGCATTGGTGGCTTCCTaGCTGCAGTTACATTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RLQAQKRGFLPHQQVTRKALVAS*LQLHCL Trigger: CAGACAATGTAACTGCAGTCAGGAAGCCACCAATGC...TTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTGGAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | GCTCCAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACTTAAGGGCAGCAGATaGGACCTCCAGCTGATTGTA | + |
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Preference number: 4 (lower is better) Translates to: APSPEERIPSTSASYQKRLKGSR*DLQLIV Trigger: TACAATCAGCTGGAGGTCTCATCTGCTGCCCTTAAG...TCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | CCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACCCTCATTCCTTAAGGGCAGCAGATaGGACCTCCAGCTGATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: PEERIPSTSASYQKRPSFLKGSR*DLQLIV Trigger: TACAATCAGCTGGAGGTCTCATCTGCTGCCCTTAAG...GAATGAGGGTCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | TGTTTTTCTGAAAGGCTCCAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGCAGGAGTTTCCAGATaGTTCCTGTCAATCCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CFSERLQAQKRGFLPHQQAGVSR*FLSIQA Trigger: AGCCTGGATTGACAGGAATCATCTGGAAACTCCTGC...TTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTGGAGCCTTTCAGAAAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | GACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAGGCGCAGGAGTTTCCAGATaGTTCCTGTCAATCCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: DLSQELRSIQIPIVFLKGAGVSR*FLSIQA Trigger: AGCCTGGATTGACAGGAATCATCTGGAAACTCCTGC...GCCTTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR GCA 90 bp | CCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACCCTCATTCCGCTCCAGAGATTTCTaGACGCAGAGGAAAGAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: PEERIPSTSASYQKRPSFRSRDF*TQRKEL Trigger: CAACTCTTTCCTCTGCGTGCAGAAATCTCTGGAGCG...GAATGAGGGTCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR GCA 90 bp | GGCTCCAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGATGGATGATCCTAGTTaGATTGGTGGCTTCCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: GSKPRREDSFHISKLPEKMDDPS*IGGFLT Trigger: AGTCAGGAAGCCACCAATGCAACTAGGATCATCCAT...CTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTGGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR CCA 90 bp | CAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACCCTATGTCAGCAGGTTGTTaGTCATGCAGCACACATCTC | + |
|
Preference number: 4 (lower is better) Translates to: QAQKRGFLPHQQVTRKDPMSAGC*SCSTHL Trigger: GAGATGTGTGCTGCATGACCAACAACCTGCTGACAT...AGGGTCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CCA 90 bp | GCTCCAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGAATGTCAGCAGGTTGTTaGTCATGCAGCACACATCTC | + |
|
Preference number: 4 (lower is better) Translates to: APSPEERIPSTSASYQKRMSAGC*SCSTHL Trigger: GAGATGTGTGCTGCATGACCAACAACCTGCTGACAT...TCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTGGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR TCA 90 bp | ATTGCTATAAATACCACAGCAGCCAACTTAGCTATTGCAGGTGGGATCAGAGAGGCATTGGTGGCTTCCTaGCTGCAGTTACATTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: IAINTTAANLAIAGGIREALVAS*LQLHCL Trigger: CAGACAATGTAACTGCAGTCAGGAAGCCACCAATGC...CTCTCTGATCCCACCTGCAATAGCTAAGTTGGCTGCTGTGGTATTTATAGCAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | CAGAGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAACTTAAGGGCAGCAGATaGGACCTCCAGCTGATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: QRPQPGAEIHSNPNCFSELKGSR*DLQLIV Trigger: TACAATCAGCTGGAGGTCTCATCTGCTGCCCTTAAG...TTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | CCACATATTGCTATAAATACCACAGCAGCCAACTTAGCTATTGCAGGTGGGATCGCAGGAGTTTCCAGATaGTTCCTGTCAATCCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: PHIAINTTAANLAIAGGIAGVSR*FLSIQA Trigger: AGCCTGGATTGACAGGAATCATCTGGAAACTCCTGC...GATCCCACCTGCAATAGCTAAGTTGGCTGCTGTGGTATTTATAGCAATATGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | AGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAGGGCAGGAGTTTCCAGATaGTTCCTGTCAATCCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RPQPGAEIHSNPNCFSERAGVSR*FLSIQA Trigger: AGCCTGGATTGACAGGAATCATCTGGAAACTCCTGC...CCTTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | CATATTGCTATAAATACCACAGCAGCCAACTTAGCTATTGCAGGTGGGATCAGAGCATTGGTGGCTTCCTaGCTGCAGTTACATTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: HIAINTTAANLAIAGGIRALVAS*LQLHCL Trigger: CAGACAATGTAACTGCAGTCAGGAAGCCACCAATGC...TCTGATCCCACCTGCAATAGCTAAGTTGGCTGCTGTGGTATTTATAGCAATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR TCA 90 bp | CATTCAAATCCCAATTGTTTTTCTGAAAGGCTCCAAGCCCAGAAGAGAGGATTCCTTAAGGGCAGCAGATaGGACCTCCAGCTGATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: HSNPNCFSERLQAQKRGFLKGSR*DLQLIV Trigger: TACAATCAGCTGGAGGTCTCATCTGCTGCCCTTAAG...GAATCCTCTCTTCTGGGCTTGGAGCCTTTCAGAAAAACAATTGGGATTTGAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR GCA 90 bp | AGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACCCTCATTCTACGCTCCAGAGATTTCTaGACGCAGAGGAAAGAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RREDSFHISKLPEKTLILRSRDF*TQRKEL Trigger: CAACTCTTTCCTCTGCGTGCAGAAATCTCTGGAGCG...TAGAATGAGGGTCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR GCA 90 bp | CCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACCCTCATTCATGGATGATCCTAGTTaGATTGGTGGCTTCCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: PEERIPSTSASYQKRPSFMDDPS*IGGFLT Trigger: AGTCAGGAAGCCACCAATGCAACTAGGATCATCCAT...GAATGAGGGTCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR CCA 90 bp | AGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAGGATGTCAGCAGGTTGTTaGTCATGCAGCACACATCTC | + |
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Preference number: 4 (lower is better) Translates to: RPQPGAEIHSNPNCFSERMSAGC*SCSTHL Trigger: GAGATGTGTGCTGCATGACCAACAACCTGCTGACAT...CCTTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR GCA 90 bp | CCACATATTGCTATAAATACCACAGCAGCCAACTTAGCTATTGCAGGTGGGATCATGGATGATCCTAGTTaGATTGGTGGCTTCCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: PHIAINTTAANLAIAGGIMDDPS*IGGFLT Trigger: AGTCAGGAAGCCACCAATGCAACTAGGATCATCCAT...GATCCCACCTGCAATAGCTAAGTTGGCTGCTGTGGTATTTATAGCAATATGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR GCA 90 bp | AGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGACCCTCATTCTAAAGGTGTCCTTAGTTTaGATGGCTCTCTTGATCTCG | + |
|
Preference number: 4 (lower is better) Translates to: RREDSFHISKLPEKTLILKVSLV*MALLIS Trigger: CGAGATCAAGAGAGCCATGCAAACTAAGGACACCTT...TAGAATGAGGGTCTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR GCA 90 bp | CATTCAAATCCCAATTGTTTTTCTGAAAGGCTCCAAGCCCAGAAGAGAGGATTCAAGGTGTCCTTAGTTTaGATGGCTCTCTTGATCTCG | + |
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Preference number: 4 (lower is better) Translates to: HSNPNCFSERLQAQKRGFKVSLV*MALLIS Trigger: CGAGATCAAGAGAGCCATGCAAACTAAGGACACCTT...GAATCCTCTCTTCTGGGCTTGGAGCCTTTCAGAAAAACAATTGGGATTTGAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR GCA 90 bp | AAGAAGCCGCTTTACAATAAGTTAGAGGGGCTGTCTATTGCTCCTATGATATCTATGGATGATCCTAGTTaGATTGGTGGCTTCCTGACT | + |
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Preference number: 4 (lower is better) Translates to: KKPLYNKLEGLSIAPMISMDDPS*IGGFLT Trigger: AGTCAGGAAGCCACCAATGCAACTAGGATCATCCAT...AGATATCATAGGAGCAATAGACAGCCCCTCTAACTTATTGTAAAGCGGCTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| CDS-3UTR TCA 90 bp | AGAGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAACTGTAGATATGAACTaGGCAGAGAATCAACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: RDLSQELRSIQIPIVFLKTVDMN*AENQRH Trigger: ATGACGTTGATTCTCTGCTCAGTTCATATCTACAGT...TTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR GCA 90 bp | CTGTCTATTGCTCCTATGATATCTGAGATCTCTCAACAGCCACATATTGCTATAAAGGTGTCCTTAGTTTaGATGGCTCTCTTGATCTCG | + |
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Preference number: 4 (lower is better) Translates to: LSIAPMISEISQQPHIAIKVSLV*MALLIS Trigger: CGAGATCAAGAGAGCCATGCAAACTAAGGACACCTT...TATAGCAATATGTGGCTGTTGAGAGATCTCAGATATCATAGGAGCAATAGACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| CDS-3UTR TCA 90 bp | ATTGCTCCTATGATATCTGAGATCTCTCAACAGCCACATATTGCTATAAATACCACTGTAGATATGAACTaGGCAGAGAATCAACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: IAPMISEISQQPHIAINTTVDMN*AENQRH Trigger: ATGACGTTGATTCTCTGCTCAGTTCATATCTACAGT...GGTATTTATAGCAATATGTGGCTGTTGAGAGATCTCAGATATCATAGGAGCAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| CDS TCA 90 bp | GCTCCAGAGATTTCTGCACGCAGAGGAAAGAGTTGGCAATGCTGCTaGTTCTCCTTAAGACCTCAAGGCTTCTCTCCTGATGGTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: APEISARRGKSWQCC*FSLRPQGFSPDGPG Trigger: TCCAGGACCATCAGGAGAGAAGCCTTGAGGTCTTAAGGAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGTGCAGAAATCTCTGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS TCA 90 bp | CATGTCCACAGAAATCAGACATCTCCTAAGACTGTAGATATGAACTaGGCAGAGAATCAACGTCATGCCCAGGAGCCAGGTAGACGCGCA | + |
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Preference number: 5 (lower is better) Translates to: HVHRNQTSPKTVDMN*AENQRHAQEPGRRA Trigger: TGCGCGTCTACCTGGCTCCTGGGCATGACGTTGATTCTCTGCTCAGTTCATATCTACAGTCTTAGGAGATGTCTGATTTCTGTGGACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | GGCTCCAAGCCCAGAAGAGAGGATTCCTTCCACATCAGCAAGTTACCAGAAAAGGTTTGCATGGCTCTCTaGATCTCGTGGAAACTCTTT | + |
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Preference number: 5 (lower is better) Translates to: GSKPRREDSFHISKLPEKVCMAL*ISWKLF Trigger: AAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAAC...CTTTTCTGGTAACTTGCTGATGTGGAAGGAATCCTCTCTTCTGGGCTTGGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | CCACATATTGCTATAAATACCACAGCAGCCAACTTAGCTATTGCAGGTGGGATCACGCAGAGGAAAGAGTaGGCAATGCTGCTGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: PHIAINTTAANLAIAGGITQRKE*AMLLIL Trigger: GAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGT...GATCCCACCTGCAATAGCTAAGTTGGCTGCTGTGGTATTTATAGCAATATGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS GCA 90 bp | TTCTCCAGGGACAGGATGGTGACATTTTTAAAGGTGTCCTTAGTTTaGATGGCTCTCTTGATCTCGTGGAAACTCTTTTCTATGAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: FSRDRMVTFLKVSLV*MALLISWKLFSMRR Trigger: GCGCCTCATAGAAAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAACTAAGGACACCTTTAAAAATGTCACCATCCTGTCCCTGGAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | CAGAGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAATGTCAGCAGGTTGTaGGTCATGCAGCACACATCT | + |
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Preference number: 5 (lower is better) Translates to: QRPQPGAEIHSNPNCFSENVSRL*VMQHTS Trigger: AGATGTGTGCTGCATGACCAACAACCTGCTGACATT...TTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | AGAGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAACGCAGAGGAAAGAGTaGGCAATGCTGCTGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: RDLSQELRSIQIPIVFLKTQRKE*AMLLIL Trigger: GAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGT...TTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR CAA 90 bp | CCGCTTTACAATAAGTTAGAGGGGCTGTCTATTGCTCCTATGATATCTGAGATCACGCAGAGGAAAGAGTaGGCAATGCTGCTGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: PLYNKLEGLSIAPMISEITQRKE*AMLLIL Trigger: GAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGT...GATCTCAGATATCATAGGAGCAATAGACAGCCCCTCTAACTTATTGTAAAGCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | CATATTGCTATAAATACCACAGCAGCCAACTTAGCTATTGCAGGTGGGATCAGAACGCAGAGGAAAGAGTaGGCAATGCTGCTGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: HIAINTTAANLAIAGGIRTQRKE*AMLLIL Trigger: GAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGT...TCTGATCCCACCTGCAATAGCTAAGTTGGCTGCTGTGGTATTTATAGCAATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS-3UTR CAA 90 bp | CAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAGGCTCCAAGTTTGCATGGCTCTCTaGATCTCGTGGAAACTCTTT | + |
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Preference number: 5 (lower is better) Translates to: QPGAEIHSNPNCFSERLQVCMAL*ISWKLF Trigger: AAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAAC...TTGGAGCCTTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | AGAGACCTCAGCCAGGAGCTGAGATCCATTCAAATCCCAATTGTTTTTCTGAAAAATGTCAGCAGGTTGTaGGTCATGCAGCACACATCT | + |
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Preference number: 5 (lower is better) Translates to: RDLSQELRSIQIPIVFLKNVSRL*VMQHTS Trigger: AGATGTGTGCTGCATGACCAACAACCTGCTGACATT...TTTCAGAAAAACAATTGGGATTTGAATGGATCTCAGCTCCTGGCTGAGGTCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS-3UTR CAA 90 bp | AATAAGTTAGAGGGGCTGTCTATTGCTCCTATGATATCTGAGATCTCTCAACAGGTTTGCATGGCTCTCTaGATCTCGTGGAAACTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: NKLEGLSIAPMISEISQQVCMAL*ISWKLF Trigger: AAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAAC...CTGTTGAGAGATCTCAGATATCATAGGAGCAATAGACAGCCCCTCTAACTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016668.13 ENSMUST00000187410.7 |
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| CDS CCA 90 bp | ACATTTTTAAAGGTGTCCTTAGTTTGCATGGCTCTCTTGATCTCGTaGAAACTCTTTTCTATGAGGCGCATGTCCACAGAAATCAGACAT | + |
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Preference number: 5 (lower is better) Translates to: TFLKVSLVCMALLIS*KLFSMRRMSTEIRH Trigger: ATGTCTGATTTCTGTGGACATGCGCCTCATAGAAAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAACTAAGGACACCTTTAAAAATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS CAA 90 bp | ATGGATGATCCTAGTTGCATTGGTGGCTTCCTGACTGCAGTTACATaGTCTGTGCACCTGACATCGCTCCAGAGATTTCTGCACGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: MDDPSCIGGFLTAVT*SVHLTSLQRFLHAE Trigger: CTCTGCGTGCAGAAATCTCTGGAGCGATGTCAGGTGCACAGACAATGTAACTGCAGTCAGGAAGCCACCAATGCAACTAGGATCATCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS CAA 72 bp | CATCGCTCCAGAGATTTCTGCACGCAGAGGAAAGAGTaGGCAATGCTGCTGATTCTCCTTAAGACCTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: HRSRDFCTQRKE*AMLLILLKTSR Trigger: CCTTGAGGTCTTAAGGAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGTGCAGAAATCTCTGGAGCGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS CAA 72 bp | CCTAGTTGCATTGGTGGCTTCCTGACTGCAGTTACATaGTCTGTGCACCTGACATCGCTCCAGAGATTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PSCIGGFLTAVT*SVHLTSLQRFL Trigger: CAGAAATCTCTGGAGCGATGTCAGGTGCACAGACAATGTAACTGCAGTCAGGAAGCCACCAATGCAACTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS TCA 72 bp | ATTTCTGCACGCAGAGGAAAGAGTTGGCAATGCTGCTaGTTCTCCTTAAGACCTCAAGGCTTCTCTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: ISARRGKSWQCC*FSLRPQGFSPD Trigger: ATCAGGAGAGAAGCCTTGAGGTCTTAAGGAGAATCAGCAGCATTGCCAACTCTTTCCTCTGCGTGCAGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS GCA 72 bp | CTCCAGCTGATTGTAGTTGTCATGGATGATCCTAGTTaGATTGGTGGCTTCCTGACTGCAGTTACATTGTCT | + |
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Preference number: 6 (lower is better) Translates to: LQLIVVVMDDPS*IGGFLTAVTLS Trigger: AGACAATGTAACTGCAGTCAGGAAGCCACCAATGCAACTAGGATCATCCATGACAACTACAATCAGCTGGAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 ENSMUST00000187916.7 |
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| CDS CAA 90 bp | AGGATGGTGACATTTTTAAAGGTGTCCTTAGTTTGCATGGCTCTCTaGATCTCGTGGAAACTCTTTTCTATGAGGCGCATGTCCACAGAA | + |
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Preference number: 6 (lower is better) Translates to: RMVTFLKVSLVCMAL*ISWKLFSMRRMSTE Trigger: TTCTGTGGACATGCGCCTCATAGAAAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAACTAAGGACACCTTTAAAAATGTCACCATCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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| CDS CAA 72 bp | ACATTTTTAAAGGTGTCCTTAGTTTGCATGGCTCTCTaGATCTCGTGGAAACTCTTTTCTATGAGGCGCATG | + |
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Preference number: 6 (lower is better) Translates to: TFLKVSLVCMAL*ISWKLFSMRRM Trigger: CATGCGCCTCATAGAAAAGAGTTTCCACGAGATCAAGAGAGCCATGCAAACTAAGGACACCTTTAAAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016668.13 ENSMUST00000112465.2 ENSMUST00000187410.7 |
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